AlfalfaGEDB | Msa0059840

M. sativa cultivar zhongmu-4 / Msa0059840

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059840	XP_039689671.1	80.690	580	64	2	1	532	36	615	0.0	924

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059840	sp\|Q9SUQ3\|Y4374_ARATH	47.021	621	210	16	16	525	24	636	4.09e-168	493

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059840	A0A072VQP2	80.690	580	64	2	1	532	5	584	0.0	923

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001940	Msa0059840	0.810089	1.370468e-50	-8.615850e-47
Msa0008200	Msa0059840	0.800461	1.425442e-48	-8.615850e-47
Msa0010110	Msa0059840	0.956346	3.663708e-114	-8.615850e-47
Msa0017950	Msa0059840	0.814893	1.221759e-51	-8.615850e-47
Msa0026710	Msa0059840	0.801756	7.749989e-49	-8.615850e-47
Msa0033110	Msa0059840	0.800135	1.660725e-48	-8.615850e-47
Msa0054920	Msa0059840	0.812787	3.555716e-51	-8.615850e-47
Msa0059840	Msa0072420	0.840734	7.275361e-58	-8.615850e-47
Msa0059840	Msa0081780	0.811259	7.657682e-51	-8.615850e-47
Msa0059840	Msa0089750	0.822719	2.037733e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059840	MtrunA17_Chr1g0159161	80.690	580	64	2	1	532	5	584	0.0	923
Msa0059840	MtrunA17_Chr3g0126271	56.814	609	174	9	3	525	7	612	0.0	645
Msa0059840	MtrunA17_Chr8g0387791	51.140	614	200	13	1	520	1	608	0.0	574
Msa0059840	MtrunA17_Chr5g0396941	48.714	583	237	8	1	523	11	591	0.0	545
Msa0059840	MtrunA17_Chr5g0432851	43.415	615	243	10	2	516	30	639	3.25e-161	473
Msa0059840	MtrunA17_Chr3g0126281	67.335	349	104	5	184	525	1	346	3.77e-157	451
Msa0059840	MtrunA17_Chr3g0128551	41.734	623	252	14	8	524	18	635	6.26e-153	451
Msa0059840	MtrunA17_Chr3g0108301	47.764	492	216	12	61	516	152	638	2.48e-142	424
Msa0059840	MtrunA17_Chr3g0108301	41.860	129	75	0	2	130	22	150	7.20e-27	115
Msa0059840	MtrunA17_Chr7g0245171	41.541	597	253	10	4	505	12	607	2.38e-141	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0059840	AT4G23740.1	47.021	621	210	16	16	525	24	636	4.16e-169	493
Msa0059840	AT4G23740.2	47.021	621	210	16	16	525	24	636	4.16e-169	493
Msa0059840	AT5G53320.1	47.255	601	227	14	1	526	5	590	1.21e-163	478
Msa0059840	AT1G64210.1	44.174	575	243	11	11	509	14	586	8.46e-152	447
Msa0059840	AT5G58300.3	42.400	625	254	10	1	524	28	647	2.39e-149	443
Msa0059840	AT5G58300.1	42.400	625	254	10	1	524	28	647	2.39e-149	443
Msa0059840	AT5G58300.2	42.400	625	254	10	1	524	28	647	2.39e-149	443
Msa0059840	AT3G08680.1	42.880	625	244	15	2	515	7	629	4.01e-149	442
Msa0059840	AT3G08680.2	42.880	625	244	15	2	515	7	629	4.01e-149	442
Msa0059840	AT5G24100.1	41.597	601	252	10	3	506	15	613	8.73e-144	427

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Find 110 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCGTCTTCTTTG+AGG	0.398845	1_2:-17313484	Msa0059840:CDS
AAACTATAGACGTCGGATGC+TGG	0.496670	1_2:+17312511	None:intergenic
AAAGCTTGTTTATCTGCTAC+TGG	0.443895	1_2:+17314409	None:intergenic
AAAGTTGGTAATAAATTTGG+TGG	0.500640	1_2:-17311930	Msa0059840:three_prime_UTR
AACAAAATCGTCTTCTTTGA+GGG	0.411398	1_2:-17313483	Msa0059840:CDS
AACAAGTCCAATATCCCCAA+GGG	0.641388	1_2:-17312581	Msa0059840:CDS
AACATCTTCCTCAACTCCAA+AGG	0.591177	1_2:-17312643	Msa0059840:CDS
AACATTTGGTACCGTTTATA+AGG	0.265538	1_2:-17313397	Msa0059840:CDS
AACCATATCCTTTGGAGTTG+AGG	0.476173	1_2:+17312635	None:intergenic
AAGAATTAGGCATGAGAATG+TGG	0.565253	1_2:-17313280	Msa0059840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCTGTATGCAAGAAA+TGG	-	chr1_2:17312051-17312070	Msa0059840:three_prime_UTR	30.0%
CTTGCATCAAATAGTATAAC+TGG	-	chr1_2:17312197-17312216	Msa0059840:CDS	30.0%
ACTGAAAAATCTAATGGCAA+TGG	+	chr1_2:17312296-17312315	None:intergenic	30.0%
GTCAAATTTGACACTGATAA+AGG	+	chr1_2:17312474-17312493	None:intergenic	30.0%
TTTCCAAATGTAGATCTTTG+AGG	+	chr1_2:17312566-17312585	None:intergenic	30.0%
ACTTCAAAGATTTCCAAGTT+TGG	-	chr1_2:17312617-17312636	Msa0059840:CDS	30.0%
GCATTATTAGGTATCATCAT+TGG	-	chr1_2:17312730-17312749	Msa0059840:CDS	30.0%
TTATTAGGTATCATCATTGG+TGG	-	chr1_2:17312733-17312752	Msa0059840:CDS	30.0%
AAACAAAATCGTCTTCTTTG+AGG	-	chr1_2:17312900-17312919	Msa0059840:intron	30.0%
AACAAAATCGTCTTCTTTGA+GGG	-	chr1_2:17312901-17312920	Msa0059840:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	17311924	17314482	17311924	ID=Msa0059840;Name=Msa0059840
chr1_2	mRNA	17311924	17314482	17311924	ID=Msa0059840-mRNA-1;Parent=Msa0059840;Name=Msa0059840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|244\|532
chr1_2	exon	17311924	17312790	17311924	ID=Msa0059840-mRNA-1:exon:6712;Parent=Msa0059840-mRNA-1
chr1_2	exon	17313190	17313757	17313190	ID=Msa0059840-mRNA-1:exon:6711;Parent=Msa0059840-mRNA-1
chr1_2	exon	17314075	17314482	17314075	ID=Msa0059840-mRNA-1:exon:6710;Parent=Msa0059840-mRNA-1
chr1_2	CDS	17314075	17314482	17314075	ID=Msa0059840-mRNA-1:cds;Parent=Msa0059840-mRNA-1
chr1_2	CDS	17313190	17313757	17313190	ID=Msa0059840-mRNA-1:cds;Parent=Msa0059840-mRNA-1
chr1_2	CDS	17312168	17312790	17312168	ID=Msa0059840-mRNA-1:cds;Parent=Msa0059840-mRNA-1
chr1_2	three_prime_UTR	17311924	17312167	17311924	ID=Msa0059840-mRNA-1:three_prime_utr;Parent=Msa0059840-mRNA-1

Gene Sequence

>Msa0059840

ATGGCCCTTTTGTTCATTGGAGCAATGTTCTTTGTTTGTGTTGGAGCTGAACCAGTAGCAGATAAACAAGCTTTGCTTGATTTCATGCACAATATGAACCACTCTACACATCTCAACTGGAACAAAAAATCTTCTGTATGCAAGAAATGGAATAGAGTTACCTGCAACACTGATAAATCAAGAGTTATATCTCTTCAGCTACAAAGTCTTGGATTGAATGGTTCAGTTCCACTAAACACTCTTAGTAGACTCTCAGCTCTTGAAAATTTGAGTCTTGCATCAAATAGTATAACTGGTTTTTTCCCATATGATTTCTCTAAGCTAAAAAATTTGACATTTCTTTTTCTCCAATTTAACAAGTTTTCTGGTCCATTGCCATTAGATTTTTCAGTTTGGAAGAATCTAACTGCAACAATGTTACATATGGAAATGTTTATCTTGCAAATGTTCATAAAAAAAGGAAAAAAAACAAAAGGACTTAAAGAAAAAGCATTATTAGGTATCATCATTGGTGGTTGTGTGCTAGGAATTTTAGTTATAGCAGCTTTCTTGATTATGTGCTGCTACGATAAACGCGGTGAAGATGGAGAACTTATCAAGTCTCAGAAGAATAAAGAAGTTTTTTTTGAGAAAAAAGAATCTTCTGAGAGTCTAGAAAGAAACAAAATCGTCTTCTTTGAGGGTTGCAATCTTGTATTTGACTTGGAAGATTTGTTGAGAGCTTCTGCTGAGGTGCTTGGAAAGGGAACATTTGGTACCGTTTATAAGGCTGCTCTGGAGGAAGCAATGACGGTCGCGGTTAAGAGATTGAAGGAGGTTACGGTGGGGAAACGTGAATTCGAACAGCAGATGGAGATGGTTGGAAGAATTAGGCATGAGAATGTGGATGCATTAAGGGCTTATTACTATTCAAAGGAAGAGAAACTTATGGTTTATGATTTTTATGAACAGGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGGGTAGAAAGAATTCCTTTAGATTGGGAATGTAGATTGAGAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATTCATGGAGAACAACTAGTCCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCCAAAGGATATGGTTGTATATCCGACATCGGTCTAGCAACAATGATAACAAGTCCAATATCCCCAAGGGCGGTAGGATACCTTGCACCGGAAGTAACCGAAACTCGAAAAGCAACGCCAGCATCCGACGTCTATAGTTTCGGTGTCTTATTACTTGAACTTTTAACTGGAAAATCTCCCTTACATGGGGGTGAGGAAGTTGTTCATTTGGTTAGGTGGGTGAATTCTGTGGTTAGAGAAGAGTGGACTTCTGAAGTTTTTGATTTGGTTTTATTGAGATCTCCTAATATAGAGGAAGAAATGGTTGAAATGTTACAAATTGGTATGGCTTGTGTTGTGAGGTTACATGAAGAAAGACCTAAAATGGATGAAGTTGTGAGAATGGTTGAGGAAATTCGCAAGGTTAATAGTGGAAATAGAACATCCACTGAATCTAGATCAGAATGTTCAACTCCAACTCCTCATATTGTCGATGTAAATTAA

Protein sequence

>Msa0059840

MALLFIGAMFFVCVGAEPVADKQALLDFMHNMNHSTHLNWNKKSSVCKKWNRVTCNTDKSRVISLQLQSLGLNGSVPLNTLSRLSALENLSLASNSITGFFPYDFSKLKNLTFLFLQFNKFSGPLPLDFSVWKNLTATMLHMEMFILQMFIKKGKKTKGLKEKALLGIIIGGCVLGILVIAAFLIMCCYDKRGEDGELIKSQKNKEVFFEKKESSESLERNKIVFFEGCNLVFDLEDLLRASAEVLGKGTFGTVYKAALEEAMTVAVKRLKEVTVGKREFEQQMEMVGRIRHENVDALRAYYYSKEEKLMVYDFYEQGSVSAMLHGKRGVERIPLDWECRLRIAIGVARGIAHIHGEQLVHGNIKASNIFLNSKGYGCISDIGLATMITSPISPRAVGYLAPEVTETRKATPASDVYSFGVLLLELLTGKSPLHGGEEVVHLVRWVNSVVREEWTSEVFDLVLLRSPNIEEEMVEMLQIGMACVVRLHEERPKMDEVVRMVEEIRKVNSGNRTSTESRSECSTPTPHIVDVN*