Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172830 | XP_003591175.1 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172830 | sp|O80494|P2B15_ARATH | 45.936 | 283 | 137 | 9 | 11 | 282 | 3 | 280 | 3.73e-76 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172830 | G7I8S6 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032710 | Msa0172830 | 0.862932 | 3.569890e-64 | -8.615850e-47 |
| Msa0033840 | Msa0172830 | -0.800323 | 1.520882e-48 | -8.615850e-47 |
| Msa0172830 | Msa0173950 | -0.809153 | 2.177834e-50 | -8.615850e-47 |
| Msa0172830 | Msa0969720 | 0.806077 | 9.801878e-50 | -8.615850e-47 |
| Msa0172830 | Msa1221960 | 0.830810 | 2.380850e-55 | -8.615850e-47 |
| Msa0172830 | Msa1265020 | 0.809450 | 1.881020e-50 | -8.615850e-47 |
| Msa0172830 | Msa1337850 | 0.807534 | 4.823462e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172830 | MtrunA17_Chr1g0192371 | 95.390 | 282 | 12 | 1 | 1 | 282 | 1 | 281 | 0.0 | 560 |
| Msa0172830 | MtrunA17_Chr7g0272091 | 60.490 | 286 | 101 | 4 | 4 | 282 | 3 | 283 | 1.05e-125 | 359 |
| Msa0172830 | MtrunA17_Chr7g0272101 | 45.487 | 277 | 129 | 6 | 8 | 282 | 1 | 257 | 3.30e-76 | 233 |
| Msa0172830 | MtrunA17_Chr1g0189671 | 42.705 | 281 | 143 | 8 | 8 | 282 | 4 | 272 | 3.93e-69 | 215 |
| Msa0172830 | MtrunA17_Chr1g0189781 | 41.489 | 282 | 146 | 7 | 6 | 282 | 6 | 273 | 1.23e-68 | 214 |
| Msa0172830 | MtrunA17_Chr1g0189591 | 41.237 | 291 | 152 | 6 | 11 | 282 | 16 | 306 | 5.65e-66 | 208 |
| Msa0172830 | MtrunA17_Chr1g0189821 | 41.516 | 277 | 146 | 5 | 8 | 282 | 4 | 266 | 5.58e-65 | 204 |
| Msa0172830 | MtrunA17_Chr4g0010881 | 41.516 | 277 | 120 | 6 | 8 | 282 | 1 | 237 | 7.52e-64 | 200 |
| Msa0172830 | MtrunA17_Chr1g0203281 | 39.437 | 284 | 152 | 5 | 6 | 282 | 2 | 272 | 1.87e-63 | 201 |
| Msa0172830 | MtrunA17_Chr1g0189721 | 38.214 | 280 | 154 | 7 | 6 | 282 | 2 | 265 | 6.82e-63 | 199 |
| Msa0172830 | MtrunA17_Chr1g0189611 | 41.007 | 278 | 149 | 5 | 6 | 282 | 2 | 265 | 1.50e-62 | 198 |
| Msa0172830 | MtrunA17_Chr1g0189621 | 40.860 | 279 | 147 | 6 | 6 | 282 | 2 | 264 | 2.95e-61 | 194 |
| Msa0172830 | MtrunA17_Chr1g0190071 | 39.510 | 286 | 152 | 8 | 9 | 282 | 5 | 281 | 3.08e-58 | 187 |
| Msa0172830 | MtrunA17_Chr1g0189751 | 40.357 | 280 | 148 | 7 | 6 | 282 | 2 | 265 | 2.70e-57 | 185 |
| Msa0172830 | MtrunA17_Chr1g0189641 | 36.972 | 284 | 160 | 6 | 6 | 282 | 2 | 273 | 1.21e-55 | 181 |
| Msa0172830 | MtrunA17_Chr1g0203331 | 41.564 | 243 | 133 | 5 | 24 | 263 | 5 | 241 | 4.48e-55 | 178 |
| Msa0172830 | MtrunA17_Chr1g0157451 | 38.095 | 294 | 149 | 12 | 8 | 282 | 4 | 283 | 2.91e-53 | 175 |
| Msa0172830 | MtrunA17_Chr3g0097191 | 36.462 | 277 | 155 | 6 | 8 | 282 | 10 | 267 | 2.30e-50 | 167 |
| Msa0172830 | MtrunA17_Chr1g0189661 | 37.102 | 283 | 162 | 7 | 8 | 282 | 4 | 278 | 1.70e-48 | 163 |
| Msa0172830 | MtrunA17_Chr1g0189711 | 36.934 | 287 | 154 | 10 | 8 | 282 | 4 | 275 | 1.12e-47 | 160 |
| Msa0172830 | MtrunA17_Chr7g0260801 | 37.943 | 282 | 143 | 9 | 9 | 282 | 17 | 274 | 1.09e-46 | 157 |
| Msa0172830 | MtrunA17_Chr1g0189771 | 43.713 | 167 | 93 | 1 | 6 | 171 | 10 | 176 | 5.48e-45 | 150 |
| Msa0172830 | MtrunA17_Chr1g0189701 | 36.519 | 293 | 158 | 10 | 8 | 282 | 35 | 317 | 6.18e-44 | 151 |
| Msa0172830 | MtrunA17_Chr3g0078331 | 33.225 | 307 | 169 | 7 | 6 | 282 | 15 | 315 | 9.93e-42 | 145 |
| Msa0172830 | MtrunA17_Chr3g0095261 | 33.220 | 295 | 156 | 8 | 8 | 282 | 10 | 283 | 6.91e-41 | 142 |
| Msa0172830 | MtrunA17_Chr1g0189571 | 41.176 | 204 | 102 | 6 | 95 | 282 | 4 | 205 | 8.23e-40 | 137 |
| Msa0172830 | MtrunA17_Chr1g0189541 | 40.000 | 190 | 97 | 5 | 93 | 282 | 12 | 184 | 4.06e-33 | 119 |
| Msa0172830 | MtrunA17_Chr2g0317291 | 35.829 | 187 | 106 | 5 | 95 | 279 | 38 | 212 | 5.18e-25 | 99.8 |
| Msa0172830 | MtrunA17_Chr7g0265551 | 26.224 | 286 | 172 | 8 | 11 | 281 | 94 | 355 | 1.02e-24 | 101 |
| Msa0172830 | MtrunA17_Chr1g0189651 | 35.176 | 199 | 105 | 5 | 87 | 282 | 2 | 179 | 2.56e-24 | 96.7 |
| Msa0172830 | MtrunA17_Chr1g0203751 | 35.811 | 148 | 93 | 2 | 6 | 153 | 26 | 171 | 2.70e-23 | 96.7 |
| Msa0172830 | MtrunA17_Chr6g0472801 | 24.746 | 295 | 176 | 10 | 1 | 282 | 15 | 276 | 5.14e-23 | 95.5 |
| Msa0172830 | MtrunA17_Chr8g0350401 | 30.500 | 200 | 117 | 5 | 11 | 192 | 25 | 220 | 2.73e-21 | 90.9 |
| Msa0172830 | MtrunA17_Chr4g0057281 | 25.517 | 290 | 165 | 9 | 8 | 281 | 19 | 273 | 1.03e-20 | 89.4 |
| Msa0172830 | MtrunA17_Chr4g0043591 | 28.151 | 238 | 126 | 9 | 52 | 282 | 91 | 290 | 2.27e-16 | 77.4 |
| Msa0172830 | MtrunA17_Chr5g0397981 | 27.219 | 169 | 113 | 5 | 3 | 168 | 30 | 191 | 4.90e-15 | 73.9 |
| Msa0172830 | MtrunA17_Chr7g0260811 | 41.667 | 96 | 54 | 1 | 77 | 172 | 49 | 142 | 8.19e-15 | 70.9 |
| Msa0172830 | MtrunA17_Chr1g0188311 | 35.252 | 139 | 75 | 6 | 135 | 263 | 22 | 155 | 3.24e-14 | 68.9 |
| Msa0172830 | MtrunA17_Chr2g0300961 | 29.286 | 140 | 83 | 4 | 11 | 150 | 7 | 130 | 8.60e-13 | 64.3 |
| Msa0172830 | MtrunA17_Chr3g0143881 | 32.061 | 131 | 63 | 4 | 153 | 282 | 2 | 107 | 1.41e-11 | 60.1 |
| Msa0172830 | MtrunA17_Chr1g0189531 | 36.782 | 87 | 52 | 2 | 7 | 93 | 66 | 149 | 2.91e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172830 | AT1G09155.1 | 45.936 | 283 | 137 | 9 | 11 | 282 | 3 | 280 | 3.79e-77 | 236 |
| Msa0172830 | AT1G56240.1 | 46.619 | 281 | 136 | 8 | 11 | 281 | 4 | 280 | 2.96e-67 | 211 |
| Msa0172830 | AT2G02240.1 | 40.072 | 277 | 146 | 4 | 6 | 281 | 59 | 316 | 8.13e-67 | 211 |
| Msa0172830 | AT1G56250.1 | 45.390 | 282 | 140 | 8 | 11 | 282 | 4 | 281 | 1.00e-66 | 209 |
| Msa0172830 | AT2G02360.1 | 40.071 | 282 | 138 | 7 | 6 | 281 | 12 | 268 | 1.43e-64 | 204 |
| Msa0172830 | AT2G02230.1 | 36.334 | 311 | 159 | 6 | 5 | 282 | 29 | 333 | 1.05e-62 | 201 |
| Msa0172830 | AT2G02250.1 | 38.849 | 278 | 145 | 7 | 8 | 281 | 47 | 303 | 2.93e-60 | 194 |
| Msa0172830 | AT1G80110.1 | 38.298 | 282 | 139 | 6 | 8 | 281 | 1 | 255 | 8.22e-58 | 186 |
| Msa0172830 | AT2G02340.1 | 37.500 | 280 | 159 | 6 | 6 | 281 | 34 | 301 | 4.96e-57 | 185 |
| Msa0172830 | AT2G02310.1 | 36.299 | 281 | 156 | 4 | 6 | 282 | 43 | 304 | 1.35e-49 | 166 |
| Msa0172830 | AT2G02320.1 | 35.714 | 280 | 155 | 7 | 7 | 281 | 39 | 298 | 1.57e-49 | 166 |
| Msa0172830 | AT2G02350.2 | 35.915 | 284 | 157 | 7 | 3 | 281 | 19 | 282 | 1.65e-49 | 166 |
| Msa0172830 | AT2G02300.1 | 34.602 | 289 | 142 | 11 | 4 | 282 | 30 | 281 | 5.56e-46 | 156 |
| Msa0172830 | AT5G24560.1 | 40.110 | 182 | 96 | 2 | 7 | 188 | 2 | 170 | 2.38e-40 | 139 |
| Msa0172830 | AT3G53000.1 | 26.207 | 290 | 174 | 8 | 7 | 281 | 20 | 284 | 6.59e-27 | 106 |
| Msa0172830 | AT3G61060.1 | 25.606 | 289 | 162 | 8 | 11 | 282 | 28 | 280 | 1.03e-22 | 95.5 |
| Msa0172830 | AT1G63090.1 | 35.366 | 164 | 97 | 3 | 7 | 168 | 25 | 181 | 6.17e-22 | 93.2 |
| Msa0172830 | AT3G61060.2 | 25.606 | 289 | 163 | 8 | 11 | 282 | 28 | 281 | 1.94e-21 | 92.0 |
| Msa0172830 | AT5G52120.1 | 33.333 | 153 | 96 | 3 | 7 | 154 | 20 | 171 | 1.54e-20 | 89.4 |
| Msa0172830 | AT1G12710.1 | 31.098 | 164 | 104 | 4 | 7 | 168 | 27 | 183 | 1.03e-17 | 81.6 |
| Msa0172830 | AT2G02350.1 | 32.075 | 159 | 90 | 4 | 127 | 281 | 21 | 165 | 1.95e-16 | 75.9 |
| Msa0172830 | AT4G19850.3 | 31.250 | 240 | 118 | 10 | 54 | 282 | 15 | 218 | 1.74e-15 | 73.9 |
| Msa0172830 | AT4G19850.1 | 33.508 | 191 | 85 | 8 | 102 | 282 | 18 | 176 | 1.06e-14 | 70.9 |
| Msa0172830 | AT1G65390.1 | 27.869 | 183 | 96 | 6 | 106 | 282 | 258 | 410 | 1.82e-13 | 70.5 |
| Msa0172830 | AT4G19840.1 | 26.496 | 234 | 134 | 8 | 53 | 282 | 46 | 245 | 4.22e-13 | 67.8 |
| Msa0172830 | AT1G12710.2 | 29.333 | 150 | 99 | 3 | 7 | 154 | 27 | 171 | 2.97e-12 | 66.2 |
Find 77 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAATCCAATTGGTATTT+AGG | 0.105843 | 1_4:-58048564 | None:intergenic |
| AAGCAAGTTTACCTTGATTC+AGG | 0.264823 | 1_4:-58049207 | None:intergenic |
| ATAGTCAAACATATTTATTT+TGG | 0.292667 | 1_4:-58051882 | None:intergenic |
| CTTTAAATTGGACAAGTATT+CGG | 0.294296 | 1_4:+58049101 | Msa0172830:CDS |
| CAAATTGATAGAAGATAATA+AGG | 0.294509 | 1_4:+58051704 | Msa0172830:CDS |
| TGTTATGTAGAGCTTTAAAT+TGG | 0.303998 | 1_4:+58049089 | Msa0172830:intron |
| ATATTCGAGTTCCATCTAAA+AGG | 0.307761 | 1_4:+58051727 | Msa0172830:CDS |
| ATGGCCAACAAAGTGCAAAA+TGG | 0.309663 | 1_4:+58051609 | Msa0172830:CDS |
| TTTAAATTGGACAAGTATTC+GGG | 0.325991 | 1_4:+58049102 | Msa0172830:CDS |
| GGAGGTTAAGATTAGTGTTA+TGG | 0.327028 | 1_4:+58051806 | Msa0172830:CDS |
| GTGAGCTGGTTAGAGATTAA+AGG | 0.341543 | 1_4:+58051471 | Msa0172830:CDS |
| TCCAATTGGTATTTAGGAAA+TGG | 0.341753 | 1_4:-58048558 | None:intergenic |
| TTGGAGAGTGAGGGGATTGA+GGG | 0.352874 | 1_4:-58048809 | None:intergenic |
| TAGAGATTAAAGGCAAAATA+AGG | 0.357825 | 1_4:+58051481 | Msa0172830:CDS |
| ATTGGAGAGTGAGGGGATTG+AGG | 0.387212 | 1_4:-58048810 | None:intergenic |
| GCCATTTCCTAAATACCAAT+TGG | 0.396658 | 1_4:+58048557 | Msa0172830:five_prime_UTR |
| TGGGTGGATGGAAATTGAAT+TGG | 0.398175 | 1_4:+58051755 | Msa0172830:CDS |
| AAGATTAGTGTTATGGAGGT+TGG | 0.420611 | 1_4:+58051813 | Msa0172830:CDS |
| GTTTATATGAAGAACAAGAT+TGG | 0.427696 | 1_4:-58048828 | None:intergenic |
| TGGCCAACAAAGTGCAAAAT+GGG | 0.432183 | 1_4:+58051610 | Msa0172830:CDS |
| TACGATTCACAAAATCCAAT+TGG | 0.437643 | 1_4:-58048572 | None:intergenic |
| TGTCTAGGAGCAGAGGTTGT+TGG | 0.444959 | 1_4:-58048870 | None:intergenic |
| AACAACCTCTGCTCCTAGAC+AGG | 0.445484 | 1_4:+58048872 | Msa0172830:CDS |
| GCAAACCACATAGGCACATA+TGG | 0.446880 | 1_4:+58048603 | Msa0172830:exon |
| TTACTATGTGGCCCCTGTCT+AGG | 0.447226 | 1_4:-58048885 | None:intergenic |
| TTGACAATTCTCTTGCAGAT+AGG | 0.453970 | 1_4:-58049140 | None:intergenic |
| TAAACAACGTAAGTCGTGTT+TGG | 0.468253 | 1_4:-58051519 | None:intergenic |
| AAGGGTGGTCTCATCGTTGA+AGG | 0.481480 | 1_4:+58051846 | Msa0172830:CDS |
| TATTCGAGTTCCATCTAAAA+GGG | 0.481762 | 1_4:+58051728 | Msa0172830:CDS |
| GGGTGGATGGAAATTGAATT+GGG | 0.484481 | 1_4:+58051756 | Msa0172830:CDS |
| GTTCCATCTAAAAGGGATGA+TGG | 0.488515 | 1_4:+58051735 | Msa0172830:CDS |
| GGAGGTTGGTTATAGACTGA+AGG | 0.490832 | 1_4:+58051827 | Msa0172830:CDS |
| TGATGCATGTAATTTCTCAA+TGG | 0.493376 | 1_4:+58048699 | Msa0172830:CDS |
| GGAGCAATGATCCATTGTAT+TGG | 0.500556 | 1_4:+58049169 | Msa0172830:CDS |
| GTTTACCTTGATTCAGGAGA+TGG | 0.502245 | 1_4:-58049201 | None:intergenic |
| CAGCTAACTCTGACTCACTT+TGG | 0.504992 | 1_4:+58048743 | Msa0172830:CDS |
| GGTTAAGATTAGTGTTATGG+AGG | 0.508835 | 1_4:+58051809 | Msa0172830:CDS |
| ATGATCCATTGTATTGGAGC+TGG | 0.516411 | 1_4:+58049175 | Msa0172830:CDS |
| TTATGAAAAGCATAGAAAGA+TGG | 0.519786 | 1_4:+58051674 | Msa0172830:CDS |
| AGAACAAGATTGGAGAGTGA+GGG | 0.522398 | 1_4:-58048818 | None:intergenic |
| AAGAACAAGATTGGAGAGTG+AGG | 0.528278 | 1_4:-58048819 | None:intergenic |
| ATTGCAACTGATACCTCAGC+TGG | 0.529997 | 1_4:-58051588 | None:intergenic |
| CAGAATCAAGTCCGTACATA+CGG | 0.539261 | 1_4:-58051563 | None:intergenic |
| CAAGAGAATTGTCAATAACA+TGG | 0.547861 | 1_4:+58049148 | Msa0172830:CDS |
| AAGGTTTCACACCGTATGTA+CGG | 0.553117 | 1_4:+58051552 | Msa0172830:CDS |
| GGAGACCATCTCCTGAATCA+AGG | 0.556931 | 1_4:+58049196 | Msa0172830:CDS |
| GAACAAGATTGGAGAGTGAG+GGG | 0.559662 | 1_4:-58048817 | None:intergenic |
| TTCCATCTAAAAGGGATGAT+GGG | 0.560247 | 1_4:+58051736 | Msa0172830:CDS |
| AGCTGAGGTATCAGTTGCAA+TGG | 0.570422 | 1_4:+58051590 | Msa0172830:CDS |
| CTCCGGCAGAGTATCTATGT+TGG | 0.572603 | 1_4:-58048638 | None:intergenic |
| TAAAAGGGATGATGGGTGGA+TGG | 0.573430 | 1_4:+58051743 | Msa0172830:CDS |
| CAGATTCGCAGAGGTGGCTG+AGG | 0.573616 | 1_4:+58051440 | Msa0172830:intron |
| TGGCCCCTGTCTAGGAGCAG+AGG | 0.574396 | 1_4:-58048877 | None:intergenic |
| AATTGCCATATGTGCCTATG+TGG | 0.587816 | 1_4:-58048608 | None:intergenic |
| CTCCAACATAGATACTCTGC+CGG | 0.588866 | 1_4:+58048636 | Msa0172830:CDS |
| GAGAAATTACATGCATCAAG+TGG | 0.592564 | 1_4:-58048694 | None:intergenic |
| GAGGTTGGTTATAGACTGAA+GGG | 0.594688 | 1_4:+58051828 | Msa0172830:CDS |
| GAAAAGCATAGAAAGATGGA+AGG | 0.602899 | 1_4:+58051678 | Msa0172830:CDS |
| CTGAGGTAAGAACAGTGAGC+TGG | 0.605200 | 1_4:+58051457 | Msa0172830:CDS |
| AGCTGCTGAATGCAAAGTTG+AGG | 0.612428 | 1_4:-58048725 | None:intergenic |
| GGTCTCCAGCTCCAATACAA+TGG | 0.612610 | 1_4:-58049180 | None:intergenic |
| ACTTGATTCTGCGCCAGCTG+AGG | 0.612928 | 1_4:+58051575 | Msa0172830:CDS |
| ACAACCTCTGCTCCTAGACA+GGG | 0.614985 | 1_4:+58048873 | Msa0172830:CDS |
| ATACCGCAGATTCGCAGAGG+TGG | 0.620226 | 1_4:+58051434 | Msa0172830:intron |
| CGTTGTTTATCTCATCACAA+AGG | 0.620339 | 1_4:+58051533 | Msa0172830:CDS |
| CAACAAAGTGCAAAATGGGA+TGG | 0.622257 | 1_4:+58051614 | Msa0172830:CDS |
| CATCTAAAAGGGATGATGGG+TGG | 0.630515 | 1_4:+58051739 | Msa0172830:CDS |
| ATGATGTCTTCATAGTCAGA+TGG | 0.630520 | 1_4:-58048778 | None:intergenic |
| TTTCTGTGGTGAAGTTGACA+TGG | 0.640269 | 1_4:+58051785 | Msa0172830:CDS |
| CAACATAGATACTCTGCCGG+AGG | 0.653807 | 1_4:+58048639 | Msa0172830:CDS |
| AATCTCGAAGCAAACCACAT+AGG | 0.654386 | 1_4:+58048594 | Msa0172830:five_prime_UTR |
| CTGTGGTGAAGTTGACATGG+AGG | 0.689911 | 1_4:+58051788 | Msa0172830:CDS |
| ATGATACCGCAGATTCGCAG+AGG | 0.694943 | 1_4:+58051431 | Msa0172830:intron |
| TTTGTACAATAAATACGAGG+AGG | 0.700943 | 1_4:+58051641 | Msa0172830:CDS |
| CAACCTCTGCTCCTAGACAG+GGG | 0.708819 | 1_4:+58048874 | Msa0172830:CDS |
| GTTGGTTATAGACTGAAGGG+TGG | 0.721602 | 1_4:+58051831 | Msa0172830:CDS |
| ATATTTGTACAATAAATACG+AGG | 0.779887 | 1_4:+58051638 | Msa0172830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAATATTTTTTT+AGG | + | chr1_4:58050364-58050383 | Msa0172830:intron | 0.0% |
| !!! | AATATTTTAATATTTTTTTA+GGG | + | chr1_4:58050365-58050384 | Msa0172830:intron | 0.0% |
| !!! | TAAAAGAATATTTTTACTTT+TGG | + | chr1_4:58049815-58049834 | Msa0172830:intron | 10.0% |
| !!! | AAAATTTTAAACTTTTTAGA+AGG | - | chr1_4:58049970-58049989 | None:intergenic | 10.0% |
| !! | TTTATTTATGTTAAAAATGT+TGG | + | chr1_4:58051232-58051251 | Msa0172830:intron | 10.0% |
| !! | TTGTTGTAATTGAAATTAAT+TGG | - | chr1_4:58048924-58048943 | None:intergenic | 15.0% |
| !! | GAATAATTGAATTAAACATT+TGG | - | chr1_4:58049273-58049292 | None:intergenic | 15.0% |
| !!! | ATTTGTGTTATTTTATTTGA+GGG | - | chr1_4:58049330-58049349 | None:intergenic | 15.0% |
| !!! | AATTTGTGTTATTTTATTTG+AGG | - | chr1_4:58049331-58049350 | None:intergenic | 15.0% |
| !! | AATTAAATATAAACGTGATA+AGG | - | chr1_4:58049543-58049562 | None:intergenic | 15.0% |
| !! | CAAATATAGAAATATAGTAT+TGG | + | chr1_4:58049895-58049914 | Msa0172830:intron | 15.0% |
| !! | AACAAGTTAAGAATTAAAAA+AGG | - | chr1_4:58050026-58050045 | None:intergenic | 15.0% |
| !!! | TTATGAATCCATTTTTTAAT+GGG | - | chr1_4:58050102-58050121 | None:intergenic | 15.0% |
| !!! | ATTATGAATCCATTTTTTAA+TGG | - | chr1_4:58050103-58050122 | None:intergenic | 15.0% |
| !!! | ACACTCTTTTTTTTTTTTTT+TGG | - | chr1_4:58050193-58050212 | None:intergenic | 15.0% |
| !! | TTTAATTATCTTCAACAAAT+AGG | - | chr1_4:58050295-58050314 | None:intergenic | 15.0% |
| !!! | TTAAAAAGACATTTTTAATG+AGG | - | chr1_4:58050664-58050683 | None:intergenic | 15.0% |
| !! | TTGTAATTGAAATTAATTGG+AGG | - | chr1_4:58048921-58048940 | None:intergenic | 20.0% |
| !!! | CATAATTTTTATGTGAATCT+CGG | + | chr1_4:58050117-58050136 | Msa0172830:intron | 20.0% |
| !! | AAGTCTCATCATTTAAAAAT+GGG | - | chr1_4:58050157-58050176 | None:intergenic | 20.0% |
| !! | AAAGTCTCATCATTTAAAAA+TGG | - | chr1_4:58050158-58050177 | None:intergenic | 20.0% |
| !!! | ATCTTTTCTCGAAAAATAAT+AGG | - | chr1_4:58050564-58050583 | None:intergenic | 20.0% |
| !!! | TAATTAAATTTTAGAGTGCT+CGG | + | chr1_4:58050583-58050602 | Msa0172830:intron | 20.0% |
| !! | TAGGATGGTATATTATTAAA+GGG | + | chr1_4:58050851-58050870 | Msa0172830:intron | 20.0% |
| !!! | TCAATACTCTTAACATTTTT+AGG | - | chr1_4:58051306-58051325 | None:intergenic | 20.0% |
| !! | ATATTTGTACAATAAATACG+AGG | + | chr1_4:58051638-58051657 | Msa0172830:CDS | 20.0% |
| !! | CAAATTGATAGAAGATAATA+AGG | + | chr1_4:58051704-58051723 | Msa0172830:CDS | 20.0% |
| ! | ACAAAATCCAATTGGTATTT+AGG | - | chr1_4:58048567-58048586 | None:intergenic | 25.0% |
| ! | GTTTATATGAAGAACAAGAT+TGG | - | chr1_4:58048831-58048850 | None:intergenic | 25.0% |
| ! | TAATTGAAATTAATTGGAGG+TGG | - | chr1_4:58048918-58048937 | None:intergenic | 25.0% |
| !! | ATGTAGTTTTTGCAAAATCA+CGG | + | chr1_4:58049004-58049023 | Msa0172830:intron | 25.0% |
| ! | ATCAATTGTTAGAATCAACA+CGG | - | chr1_4:58049046-58049065 | None:intergenic | 25.0% |
| !!! | TGTTATGTAGAGCTTTAAAT+TGG | + | chr1_4:58049089-58049108 | Msa0172830:intron | 25.0% |
| ! | CTTTAAATTGGACAAGTATT+CGG | + | chr1_4:58049101-58049120 | Msa0172830:CDS | 25.0% |
| ! | TTTAAATTGGACAAGTATTC+GGG | + | chr1_4:58049102-58049121 | Msa0172830:CDS | 25.0% |
| ! | TGAATTAAACATTTGGATTC+AGG | - | chr1_4:58049266-58049285 | None:intergenic | 25.0% |
| ! | AGGTATAGAACAAATCTTAT+CGG | - | chr1_4:58049501-58049520 | None:intergenic | 25.0% |
| ! | TCTTAACATGTGTCTTTAAA+AGG | - | chr1_4:58049871-58049890 | None:intergenic | 25.0% |
| ! | GTTATGGAAAAAGGAATATA+TGG | + | chr1_4:58050269-58050288 | Msa0172830:intron | 25.0% |
| ! | AATGTTAAGATCATCTTCAA+TGG | + | chr1_4:58050510-58050529 | Msa0172830:intron | 25.0% |
| ! | TTGGAATTCTACAATAAACA+TGG | + | chr1_4:58050610-58050629 | Msa0172830:intron | 25.0% |
| !! | ACATTTTTAATGAGGACAAA+TGG | - | chr1_4:58050656-58050675 | None:intergenic | 25.0% |
| ! | AACCTTCTTTCTAAATCTAA+TGG | - | chr1_4:58050796-58050815 | None:intergenic | 25.0% |
| !!! | TTTAGAAAGAAGGTTTTGAA+TGG | + | chr1_4:58050801-58050820 | Msa0172830:intron | 25.0% |
| ! | TAATAATATACCATCCTAGT+GGG | - | chr1_4:58050849-58050868 | None:intergenic | 25.0% |
| ! | TTAATAATATACCATCCTAG+TGG | - | chr1_4:58050850-58050869 | None:intergenic | 25.0% |
| ! | CTAGGATGGTATATTATTAA+AGG | + | chr1_4:58050850-58050869 | Msa0172830:intron | 25.0% |
| ! | AGGATGGTATATTATTAAAG+GGG | + | chr1_4:58050852-58050871 | Msa0172830:intron | 25.0% |
| !!! | AAATGTTAAGAGTATTGAGT+CGG | + | chr1_4:58051308-58051327 | Msa0172830:intron | 25.0% |
| ! | GTAAGTTTATTAAAGACCAT+TGG | - | chr1_4:58051407-58051426 | None:intergenic | 25.0% |
| ! | TAGAGATTAAAGGCAAAATA+AGG | + | chr1_4:58051481-58051500 | Msa0172830:CDS | 25.0% |
| !! | TTATGAAAAGCATAGAAAGA+TGG | + | chr1_4:58051674-58051693 | Msa0172830:CDS | 25.0% |
| TCCAATTGGTATTTAGGAAA+TGG | - | chr1_4:58048561-58048580 | None:intergenic | 30.0% | |
| TACGATTCACAAAATCCAAT+TGG | - | chr1_4:58048575-58048594 | None:intergenic | 30.0% | |
| !!! | ATTTTTGAAACACAATCCTC+CGG | - | chr1_4:58048658-58048677 | None:intergenic | 30.0% |
| TGATGCATGTAATTTCTCAA+TGG | + | chr1_4:58048699-58048718 | Msa0172830:CDS | 30.0% | |
| CAAGAGAATTGTCAATAACA+TGG | + | chr1_4:58049148-58049167 | Msa0172830:CDS | 30.0% | |
| GCATGATAAGCTTAAACAAA+AGG | - | chr1_4:58049244-58049263 | None:intergenic | 30.0% | |
| ! | AATTTGTGTTATTAACGTGC+AGG | - | chr1_4:58049301-58049320 | None:intergenic | 30.0% |
| ACTTTAAGTCACAAGTTAGT+AGG | + | chr1_4:58049713-58049732 | Msa0172830:intron | 30.0% | |
| !! | TTCTTAACTTGTTCTCCTAT+AGG | + | chr1_4:58050033-58050052 | Msa0172830:intron | 30.0% |
| !! | TCTTAACTTGTTCTCCTATA+GGG | + | chr1_4:58050034-58050053 | Msa0172830:intron | 30.0% |
| !!! | CCATTTTTTAATGGGTCATA+AGG | - | chr1_4:58050094-58050113 | None:intergenic | 30.0% |
| CCTTATGACCCATTAAAAAA+TGG | + | chr1_4:58050091-58050110 | Msa0172830:intron | 30.0% | |
| ATAACTAGTCAACTTACGTT+AGG | - | chr1_4:58050254-58050273 | None:intergenic | 30.0% | |
| ! | TAACGTAAGTTGACTAGTTA+TGG | + | chr1_4:58050253-58050272 | Msa0172830:intron | 30.0% |
| ! | AGTTGACTAGTTATGGAAAA+AGG | + | chr1_4:58050260-58050279 | Msa0172830:intron | 30.0% |
| ! | TTTTAATGAGGACAAATGGT+GGG | - | chr1_4:58050652-58050671 | None:intergenic | 30.0% |
| ! | TTTTTAATGAGGACAAATGG+TGG | - | chr1_4:58050653-58050672 | None:intergenic | 30.0% |
| TTAAAACCATTTGTCCTCAA+TGG | + | chr1_4:58050680-58050699 | Msa0172830:intron | 30.0% | |
| TTCTTTCTAAATCTAATGGC+TGG | - | chr1_4:58050792-58050811 | None:intergenic | 30.0% | |
| AGCCATTAGATTTAGAAAGA+AGG | + | chr1_4:58050791-58050810 | Msa0172830:intron | 30.0% | |
| GGATGGTATATTATTAAAGG+GGG | + | chr1_4:58050853-58050872 | Msa0172830:intron | 30.0% | |
| TTTAATGAGAAAGACTTGTG+TGG | - | chr1_4:58051045-58051064 | None:intergenic | 30.0% | |
| ACACAAGTCTTTCTCATTAA+AGG | + | chr1_4:58051044-58051063 | Msa0172830:intron | 30.0% | |
| CACAAGTCTTTCTCATTAAA+GGG | + | chr1_4:58051045-58051064 | Msa0172830:intron | 30.0% | |
| TTTGTACAATAAATACGAGG+AGG | + | chr1_4:58051641-58051660 | Msa0172830:CDS | 30.0% | |
| ! | ATATTCGAGTTCCATCTAAA+AGG | + | chr1_4:58051727-58051746 | Msa0172830:CDS | 30.0% |
| ! | TATTCGAGTTCCATCTAAAA+GGG | + | chr1_4:58051728-58051747 | Msa0172830:CDS | 30.0% |
| GCCATTTCCTAAATACCAAT+TGG | + | chr1_4:58048557-58048576 | Msa0172830:five_prime_UTR | 35.0% | |
| GAGAAATTACATGCATCAAG+TGG | - | chr1_4:58048697-58048716 | None:intergenic | 35.0% | |
| ATGATGTCTTCATAGTCAGA+TGG | - | chr1_4:58048781-58048800 | None:intergenic | 35.0% | |
| CAATGAGTTTGACAGAATCA+TGG | + | chr1_4:58048973-58048992 | Msa0172830:intron | 35.0% | |
| ! | TAGTTTTTGCAAAATCACGG+TGG | + | chr1_4:58049007-58049026 | Msa0172830:intron | 35.0% |
| TTGACAATTCTCTTGCAGAT+AGG | - | chr1_4:58049143-58049162 | None:intergenic | 35.0% | |
| AAGCAAGTTTACCTTGATTC+AGG | - | chr1_4:58049210-58049229 | None:intergenic | 35.0% | |
| GATGATGTAAGCAAGATATG+TGG | - | chr1_4:58049451-58049470 | None:intergenic | 35.0% | |
| !!! | CCACGTTTTAATTAAGGTGT+CGG | - | chr1_4:58049617-58049636 | None:intergenic | 35.0% |
| CGACACCTTAATTAAAACGT+GGG | + | chr1_4:58049615-58049634 | Msa0172830:intron | 35.0% | |
| !!! | ATCCTCCCACGTTTTAATTA+AGG | - | chr1_4:58049623-58049642 | None:intergenic | 35.0% |
| TTAATTAAAACGTGGGAGGA+TGG | + | chr1_4:58049622-58049641 | Msa0172830:intron | 35.0% | |
| TAATTAAAACGTGGGAGGAT+GGG | + | chr1_4:58049623-58049642 | Msa0172830:intron | 35.0% | |
| ! | CAAAATAACTTGTGCCCTAT+AGG | - | chr1_4:58050051-58050070 | None:intergenic | 35.0% |
| !!! | TTGTTTTAGTCCTGAACTTG+TGG | + | chr1_4:58050068-58050087 | Msa0172830:intron | 35.0% |
| !!! | TTAAATTTTAGAGTGCTCGG+TGG | + | chr1_4:58050586-58050605 | Msa0172830:intron | 35.0% |
| TTTAATGAGGACAAATGGTG+GGG | - | chr1_4:58050651-58050670 | None:intergenic | 35.0% | |
| AAATTGTAGTCTCCTACTGT+AGG | - | chr1_4:58050738-58050757 | None:intergenic | 35.0% | |
| AAAGGGGGAAAATACTTGTA+TGG | + | chr1_4:58050868-58050887 | Msa0172830:intron | 35.0% | |
| GAAAATACTTGTATGGACCA+GGG | + | chr1_4:58050875-58050894 | Msa0172830:intron | 35.0% | |
| TTGGTTGTGACCAAGAAATT+GGG | - | chr1_4:58050907-58050926 | None:intergenic | 35.0% | |
| TTTGGTTGTGACCAAGAAAT+TGG | - | chr1_4:58050908-58050927 | None:intergenic | 35.0% | |
| TCTCTTCTCTCTCATTTCTT+TGG | - | chr1_4:58050926-58050945 | None:intergenic | 35.0% | |
| !! | ATGGAAATGGTCGTCATTTT+TGG | - | chr1_4:58051377-58051396 | None:intergenic | 35.0% |
| TAAACAACGTAAGTCGTGTT+TGG | - | chr1_4:58051522-58051541 | None:intergenic | 35.0% | |
| CGTTGTTTATCTCATCACAA+AGG | + | chr1_4:58051533-58051552 | Msa0172830:CDS | 35.0% | |
| ! | GAAAAGCATAGAAAGATGGA+AGG | + | chr1_4:58051678-58051697 | Msa0172830:CDS | 35.0% |
| TTCCATCTAAAAGGGATGAT+GGG | + | chr1_4:58051736-58051755 | Msa0172830:CDS | 35.0% | |
| GGAGGTTAAGATTAGTGTTA+TGG | + | chr1_4:58051806-58051825 | Msa0172830:CDS | 35.0% | |
| GGTTAAGATTAGTGTTATGG+AGG | + | chr1_4:58051809-58051828 | Msa0172830:CDS | 35.0% | |
| AAGATTAGTGTTATGGAGGT+TGG | + | chr1_4:58051813-58051832 | Msa0172830:CDS | 35.0% | |
| AATCTCGAAGCAAACCACAT+AGG | + | chr1_4:58048594-58048613 | Msa0172830:five_prime_UTR | 40.0% | |
| AATTGCCATATGTGCCTATG+TGG | - | chr1_4:58048611-58048630 | None:intergenic | 40.0% | |
| AGAACAAGATTGGAGAGTGA+GGG | - | chr1_4:58048821-58048840 | None:intergenic | 40.0% | |
| AAGAACAAGATTGGAGAGTG+AGG | - | chr1_4:58048822-58048841 | None:intergenic | 40.0% | |
| ! | GGTGGATTCTACTTACTATG+TGG | - | chr1_4:58048900-58048919 | None:intergenic | 40.0% |
| GGAGCAATGATCCATTGTAT+TGG | + | chr1_4:58049169-58049188 | Msa0172830:CDS | 40.0% | |
| ATGATCCATTGTATTGGAGC+TGG | + | chr1_4:58049175-58049194 | Msa0172830:CDS | 40.0% | |
| GTTTACCTTGATTCAGGAGA+TGG | - | chr1_4:58049204-58049223 | None:intergenic | 40.0% | |
| GACATGCATGCAAACAAAGT+AGG | - | chr1_4:58049521-58049540 | None:intergenic | 40.0% | |
| CCGACACCTTAATTAAAACG+TGG | + | chr1_4:58049614-58049633 | Msa0172830:intron | 40.0% | |
| CACCTTAATTAAAACGTGGG+AGG | + | chr1_4:58049618-58049637 | Msa0172830:intron | 40.0% | |
| GGAAAATACTTGTATGGACC+AGG | + | chr1_4:58050874-58050893 | Msa0172830:intron | 40.0% | |
| TGTGACCAAGAAATTGGGTT+TGG | - | chr1_4:58050902-58050921 | None:intergenic | 40.0% | |
| TGTGACCAAACTCAATTGTG+TGG | + | chr1_4:58051012-58051031 | Msa0172830:intron | 40.0% | |
| !!! | AAAGGGTGTTTTTGTCGTGA+AGG | + | chr1_4:58051062-58051081 | Msa0172830:intron | 40.0% |
| ATGCTGGTGGTAACATTGTT+GGG | - | chr1_4:58051119-58051138 | None:intergenic | 40.0% | |
| ATCAATCGAAGAATCTCACG+AGG | - | chr1_4:58051181-58051200 | None:intergenic | 40.0% | |
| !! | TGTTAAGAGTATTGAGTCGG+AGG | + | chr1_4:58051311-58051330 | Msa0172830:intron | 40.0% |
| AATGACGACCATTTCCATTG+CGG | + | chr1_4:58051379-58051398 | Msa0172830:intron | 40.0% | |
| GTGAGCTGGTTAGAGATTAA+AGG | + | chr1_4:58051471-58051490 | Msa0172830:CDS | 40.0% | |
| AAGGTTTCACACCGTATGTA+CGG | + | chr1_4:58051552-58051571 | Msa0172830:CDS | 40.0% | |
| CAGAATCAAGTCCGTACATA+CGG | - | chr1_4:58051566-58051585 | None:intergenic | 40.0% | |
| ATGGCCAACAAAGTGCAAAA+TGG | + | chr1_4:58051609-58051628 | Msa0172830:CDS | 40.0% | |
| TGGCCAACAAAGTGCAAAAT+GGG | + | chr1_4:58051610-58051629 | Msa0172830:CDS | 40.0% | |
| ! | CATCCCATTTTGCACTTTGT+TGG | - | chr1_4:58051616-58051635 | None:intergenic | 40.0% |
| CAACAAAGTGCAAAATGGGA+TGG | + | chr1_4:58051614-58051633 | Msa0172830:CDS | 40.0% | |
| GTTCCATCTAAAAGGGATGA+TGG | + | chr1_4:58051735-58051754 | Msa0172830:CDS | 40.0% | |
| TGGGTGGATGGAAATTGAAT+TGG | + | chr1_4:58051755-58051774 | Msa0172830:CDS | 40.0% | |
| GGGTGGATGGAAATTGAATT+GGG | + | chr1_4:58051756-58051775 | Msa0172830:CDS | 40.0% | |
| ! | GAATTGGGTGAGTTTTTCTG+TGG | + | chr1_4:58051771-58051790 | Msa0172830:CDS | 40.0% |
| TTTCTGTGGTGAAGTTGACA+TGG | + | chr1_4:58051785-58051804 | Msa0172830:CDS | 40.0% | |
| ! | GAGGTTGGTTATAGACTGAA+GGG | + | chr1_4:58051828-58051847 | Msa0172830:CDS | 40.0% |
| GCAAACCACATAGGCACATA+TGG | + | chr1_4:58048603-58048622 | Msa0172830:exon | 45.0% | |
| CTCCAACATAGATACTCTGC+CGG | + | chr1_4:58048636-58048655 | Msa0172830:CDS | 45.0% | |
| AGCTGCTGAATGCAAAGTTG+AGG | - | chr1_4:58048728-58048747 | None:intergenic | 45.0% | |
| CAGCTAACTCTGACTCACTT+TGG | + | chr1_4:58048743-58048762 | Msa0172830:CDS | 45.0% | |
| GAACAAGATTGGAGAGTGAG+GGG | - | chr1_4:58048820-58048839 | None:intergenic | 45.0% | |
| !!! | TTTTAGAGTGCTCGGTGGAT+TGG | + | chr1_4:58050591-58050610 | Msa0172830:intron | 45.0% |
| CTACGGTAGGCAACCTTAAT+GGG | + | chr1_4:58050709-58050728 | Msa0172830:intron | 45.0% | |
| CTACTGTAGGAGACCCATTA+AGG | - | chr1_4:58050725-58050744 | None:intergenic | 45.0% | |
| ! | CTTAATGGGTCTCCTACAGT+AGG | + | chr1_4:58050723-58050742 | Msa0172830:intron | 45.0% |
| ! | AAGAAATTGGGTTTGGTCCC+TGG | - | chr1_4:58050895-58050914 | None:intergenic | 45.0% |
| AGGGACCAAACCCAATTTCT+TGG | + | chr1_4:58050894-58050913 | Msa0172830:intron | 45.0% | |
| CAGGACCACACAATTGAGTT+TGG | - | chr1_4:58051020-58051039 | None:intergenic | 45.0% | |
| CAAACTCAATTGTGTGGTCC+TGG | + | chr1_4:58051018-58051037 | Msa0172830:intron | 45.0% | |
| GTGGTAACATTGTTGGGGAA+GGG | - | chr1_4:58051113-58051132 | None:intergenic | 45.0% | |
| TGCTGGTGGTAACATTGTTG+GGG | - | chr1_4:58051118-58051137 | None:intergenic | 45.0% | |
| GATGCTGGTGGTAACATTGT+TGG | - | chr1_4:58051120-58051139 | None:intergenic | 45.0% | |
| AAGAATCTCACGAGGATGCT+GGG | - | chr1_4:58051173-58051192 | None:intergenic | 45.0% | |
| CATTGGATCCGCAATGGAAA+TGG | - | chr1_4:58051390-58051409 | None:intergenic | 45.0% | |
| CATTTCCATTGCGGATCCAA+TGG | + | chr1_4:58051388-58051407 | Msa0172830:intron | 45.0% | |
| AAAGACCATTGGATCCGCAA+TGG | - | chr1_4:58051396-58051415 | None:intergenic | 45.0% | |
| GCGAATCTGCGGTATCATTA+AGG | - | chr1_4:58051429-58051448 | None:intergenic | 45.0% | |
| ATTGCAACTGATACCTCAGC+TGG | - | chr1_4:58051591-58051610 | None:intergenic | 45.0% | |
| ! | AGCTGAGGTATCAGTTGCAA+TGG | + | chr1_4:58051590-58051609 | Msa0172830:CDS | 45.0% |
| ! | CACCCATCATCCCTTTTAGA+TGG | - | chr1_4:58051741-58051760 | None:intergenic | 45.0% |
| !! | CATCTAAAAGGGATGATGGG+TGG | + | chr1_4:58051739-58051758 | Msa0172830:CDS | 45.0% |
| !! | TAAAAGGGATGATGGGTGGA+TGG | + | chr1_4:58051743-58051762 | Msa0172830:CDS | 45.0% |
| ! | GGAGGTTGGTTATAGACTGA+AGG | + | chr1_4:58051827-58051846 | Msa0172830:CDS | 45.0% |
| GTTGGTTATAGACTGAAGGG+TGG | + | chr1_4:58051831-58051850 | Msa0172830:CDS | 45.0% | |
| ! | CTCCGGCAGAGTATCTATGT+TGG | - | chr1_4:58048641-58048660 | None:intergenic | 50.0% |
| CAACATAGATACTCTGCCGG+AGG | + | chr1_4:58048639-58048658 | Msa0172830:CDS | 50.0% | |
| TTGGAGAGTGAGGGGATTGA+GGG | - | chr1_4:58048812-58048831 | None:intergenic | 50.0% | |
| ATTGGAGAGTGAGGGGATTG+AGG | - | chr1_4:58048813-58048832 | None:intergenic | 50.0% | |
| TGTCTAGGAGCAGAGGTTGT+TGG | - | chr1_4:58048873-58048892 | None:intergenic | 50.0% | |
| AACAACCTCTGCTCCTAGAC+AGG | + | chr1_4:58048872-58048891 | Msa0172830:CDS | 50.0% | |
| ACAACCTCTGCTCCTAGACA+GGG | + | chr1_4:58048873-58048892 | Msa0172830:CDS | 50.0% | |
| TTACTATGTGGCCCCTGTCT+AGG | - | chr1_4:58048888-58048907 | None:intergenic | 50.0% | |
| GGTCTCCAGCTCCAATACAA+TGG | - | chr1_4:58049183-58049202 | None:intergenic | 50.0% | |
| GGAGACCATCTCCTGAATCA+AGG | + | chr1_4:58049196-58049215 | Msa0172830:CDS | 50.0% | |
| TAAAACGTGGGAGGATGGGA+TGG | + | chr1_4:58049627-58049646 | Msa0172830:intron | 50.0% | |
| AAAACGTGGGAGGATGGGAT+GGG | + | chr1_4:58049628-58049647 | Msa0172830:intron | 50.0% | |
| GGTCATAAGGCCACAAGTTC+AGG | - | chr1_4:58050081-58050100 | None:intergenic | 50.0% | |
| CCAACGCCATTGAGGACAAA+TGG | - | chr1_4:58050689-58050708 | None:intergenic | 50.0% | |
| CCATTTGTCCTCAATGGCGT+TGG | + | chr1_4:58050686-58050705 | Msa0172830:intron | 50.0% | |
| GCTACGGTAGGCAACCTTAA+TGG | + | chr1_4:58050708-58050727 | Msa0172830:intron | 50.0% | |
| TGTTTGCAGCATGACCCACT+AGG | + | chr1_4:58050832-58050851 | Msa0172830:intron | 50.0% | |
| GAGAAAGACTTGTGTGGACC+AGG | - | chr1_4:58051039-58051058 | None:intergenic | 50.0% | |
| CATTGTTGGGGAAGGGAACT+GGG | - | chr1_4:58051106-58051125 | None:intergenic | 50.0% | |
| ACATTGTTGGGGAAGGGAAC+TGG | - | chr1_4:58051107-58051126 | None:intergenic | 50.0% | |
| GGTGGTAACATTGTTGGGGA+AGG | - | chr1_4:58051114-58051133 | None:intergenic | 50.0% | |
| GGGAATGTATGCAGCTTGCA+AGG | - | chr1_4:58051153-58051172 | None:intergenic | 50.0% | |
| GAAGAATCTCACGAGGATGC+TGG | - | chr1_4:58051174-58051193 | None:intergenic | 50.0% | |
| ATGATACCGCAGATTCGCAG+AGG | + | chr1_4:58051431-58051450 | Msa0172830:intron | 50.0% | |
| CTGAGGTAAGAACAGTGAGC+TGG | + | chr1_4:58051457-58051476 | Msa0172830:CDS | 50.0% | |
| CTGTGGTGAAGTTGACATGG+AGG | + | chr1_4:58051788-58051807 | Msa0172830:CDS | 50.0% | |
| AAGGGTGGTCTCATCGTTGA+AGG | + | chr1_4:58051846-58051865 | Msa0172830:CDS | 50.0% | |
| CAACCTCTGCTCCTAGACAG+GGG | + | chr1_4:58048874-58048893 | Msa0172830:CDS | 55.0% | |
| !! | GTCCTCAATGGCGTTGGCTA+CGG | + | chr1_4:58050692-58050711 | Msa0172830:intron | 55.0% |
| TACCGTAGCCAACGCCATTG+AGG | - | chr1_4:58050697-58050716 | None:intergenic | 55.0% | |
| !! | TCAATGGCGTTGGCTACGGT+AGG | + | chr1_4:58050696-58050715 | Msa0172830:intron | 55.0% |
| TGCAGCATGACCCACTAGGA+TGG | + | chr1_4:58050836-58050855 | Msa0172830:intron | 55.0% | |
| CAAGGAACACACGAGGATGC+TGG | - | chr1_4:58051135-58051154 | None:intergenic | 55.0% | |
| CAGCTTGCAAGGAACACACG+AGG | - | chr1_4:58051142-58051161 | None:intergenic | 55.0% | |
| ATACCGCAGATTCGCAGAGG+TGG | + | chr1_4:58051434-58051453 | Msa0172830:intron | 55.0% | |
| ACTTGATTCTGCGCCAGCTG+AGG | + | chr1_4:58051575-58051594 | Msa0172830:CDS | 55.0% | |
| GGAACACACGAGGATGCTGG+TGG | - | chr1_4:58051132-58051151 | None:intergenic | 60.0% | |
| CAGCCACCTCTGCGAATCTG+CGG | - | chr1_4:58051440-58051459 | None:intergenic | 60.0% | |
| CAGATTCGCAGAGGTGGCTG+AGG | + | chr1_4:58051440-58051459 | Msa0172830:intron | 60.0% | |
| TGGCCCCTGTCTAGGAGCAG+AGG | - | chr1_4:58048880-58048899 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58048555 | 58051890 | 58048555 | ID=Msa0172830;Name=Msa0172830 |
| chr1_4 | mRNA | 58048555 | 58051890 | 58048555 | ID=Msa0172830-mRNA-1;Parent=Msa0172830;Name=Msa0172830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=67|0.5|0.33|1|1|1|3|0|282 |
| chr1_4 | exon | 58048555 | 58048903 | 58048555 | ID=Msa0172830-mRNA-1:exon:17809;Parent=Msa0172830-mRNA-1 |
| chr1_4 | exon | 58049099 | 58049217 | 58049099 | ID=Msa0172830-mRNA-1:exon:17810;Parent=Msa0172830-mRNA-1 |
| chr1_4 | exon | 58051443 | 58051890 | 58051443 | ID=Msa0172830-mRNA-1:exon:17811;Parent=Msa0172830-mRNA-1 |
| chr1_4 | five_prime_UTR | 58048555 | 58048621 | 58048555 | ID=Msa0172830-mRNA-1:five_prime_utr;Parent=Msa0172830-mRNA-1 |
| chr1_4 | CDS | 58048622 | 58048903 | 58048622 | ID=Msa0172830-mRNA-1:cds;Parent=Msa0172830-mRNA-1 |
| chr1_4 | CDS | 58049099 | 58049217 | 58049099 | ID=Msa0172830-mRNA-1:cds;Parent=Msa0172830-mRNA-1 |
| chr1_4 | CDS | 58051443 | 58051890 | 58051443 | ID=Msa0172830-mRNA-1:cds;Parent=Msa0172830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
