AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173950 MtrunA17_Chr1g0194181 100.000 57 0 0 36 92 6 62 3.19e-35 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173950 AT1G02475.1 71.591 88 25 0 3 90 131 218 1.80e-40 133
Msa0173950 AT4G01883.1 61.111 90 35 0 3 92 133 222 1.99e-33 115
Msa0173950 AT1G02470.1 56.818 88 38 0 3 90 132 219 2.76e-33 114
Msa0173950 AT1G02470.2 59.375 64 26 0 3 66 132 195 7.86e-23 87.4
Msa0173950 AT4G01883.2 61.538 65 25 0 3 67 133 197 6.15e-22 85.1
Msa0173950 AT4G01883.3 58.824 51 21 0 3 53 133 183 1.73e-15 68.2

Find 106 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATCACATAAATTATTT+TGG 0.155684 1_4:-59415780 None:intergenic
TTATTTCATATTCCTCTAAT+AGG 0.198318 1_4:+59416706 Msa0173950:five_prime_UTR
AATGTTGTATATTTCTTAAT+TGG 0.238076 1_4:+59416810 Msa0173950:five_prime_UTR
TTAAGTTGCTTATCCAAATA+TGG 0.248820 1_4:+59416681 Msa0173950:five_prime_UTR
ATATGAAATAAGGCCATATT+TGG 0.258178 1_4:-59416694 None:intergenic
GTGCCACAAGGTTGGGATTC+CGG 0.262628 1_4:-59421888 None:intergenic
GATTGAATTTCATAAAGATT+TGG 0.263236 1_4:+59421732 Msa0173950:three_prime_UTR
TGCCACAAGGTTGGGATTCC+GGG 0.269934 1_4:-59421887 None:intergenic
TTAATTCCTCACGGCTCTTA+TGG 0.271438 1_4:+59421807 Msa0173950:three_prime_UTR
CACCTTAACAGTGGAAATAA+AGG 0.283136 1_4:-59417005 None:intergenic
CGAAAAGAAGCAAAAGTATC+AGG 0.296065 1_4:-59417464 None:intergenic
TATTTCATATTCCTCTAATA+GGG 0.313517 1_4:+59416707 Msa0173950:five_prime_UTR
GAAATAAAGGGCATCCATTC+CGG 0.313746 1_4:-59416992 None:intergenic
GGTATGGGCACATGACTTAT+AGG 0.324663 1_4:-59422064 None:intergenic
AGGCATGAAGAAGGACCTTT+TGG 0.331509 1_4:-59420316 None:intergenic
ATTGAATTTCATAAAGATTT+GGG 0.337700 1_4:+59421733 Msa0173950:three_prime_UTR
GCCCTTTATTTCCACTGTTA+AGG 0.341799 1_4:+59417003 Msa0173950:five_prime_UTR
TATTAGAGGAATATGAAATA+AGG 0.360118 1_4:-59416704 None:intergenic
GTCAGAATATTGAGTTCTCT+TGG 0.369456 1_4:+59417409 Msa0173950:five_prime_UTR
TATGAAATTCAATCAGTGTT+TGG 0.377594 1_4:-59421723 None:intergenic
GAAGCTTCTAGAAGTAAAAT+TGG 0.382494 1_4:-59415958 None:intergenic
GAAAATCCATTGGCGATCTC+TGG 0.391451 1_4:+59417555 Msa0173950:CDS
TTCAGCAGTGCCACAAGGTT+GGG 0.392936 1_4:-59421895 None:intergenic
TTAAGTAAACCTTCAAGAAA+TGG 0.393153 1_4:-59421598 None:intergenic
AAAATGGAGCCCTGAAAATC+AGG 0.393353 1_4:-59421671 None:intergenic
TTCCCCTGTCATGGAGTGGC+AGG 0.393458 1_4:+59416076 Msa0173950:five_prime_UTR
CTCTGGATGGTCTTCCCAAC+AGG 0.395898 1_4:+59417572 Msa0173950:CDS
TGCGACAGGTCAGGTTTGTC+TGG 0.396361 1_4:-59417360 None:intergenic
CTAAAACGAATGGAACAAAA+TGG 0.404476 1_4:-59416755 None:intergenic
AAAAGAATATTTCCGAATGC+AGG 0.408530 1_4:+59416903 Msa0173950:five_prime_UTR
AGGTTTACTTAAACGTGGTT+TGG 0.410150 1_4:+59421609 Msa0173950:CDS
AAATAAAGGGCATCCATTCC+GGG 0.416616 1_4:-59416991 None:intergenic
AAATTACAATACAGCTGGTA+TGG 0.422046 1_4:-59422080 None:intergenic
TCCTTGAAGTATAAGGCATT+TGG 0.430828 1_4:+59417387 Msa0173950:five_prime_UTR
TTATCATGCCAGTGTTGGTT+AGG 0.432396 1_4:+59421761 Msa0173950:three_prime_UTR
ACCAAATGCCTTATACTTCA+AGG 0.433774 1_4:-59417388 None:intergenic
TTCCGAATGCAGGGTTAAGA+TGG 0.435808 1_4:+59416913 Msa0173950:five_prime_UTR
TGCCTTTGTCAAACCATCTC+AGG 0.440630 1_4:+59422030 Msa0173950:three_prime_UTR
CTCCATCTTAACCCTGCATT+CGG 0.449371 1_4:-59416915 None:intergenic
GAAATACTCCAACGTCTTGA+AGG 0.449380 1_4:-59421947 None:intergenic
AAGGACCATTGCGACAGGTC+AGG 0.449994 1_4:-59417369 None:intergenic
GCAATGGTCCTTGAAGTATA+AGG 0.452028 1_4:+59417380 Msa0173950:five_prime_UTR
TTGGAAGAGAGTGAAGTTGA+GGG 0.452562 1_4:-59415981 None:intergenic
CAATCCTGCCACTCCATGAC+AGG 0.454346 1_4:-59416080 None:intergenic
GCCCTTGTCAGTTACCTGTT+GGG 0.457466 1_4:-59417586 None:intergenic
GCACTGCAACCATTTCTTGA+AGG 0.468212 1_4:+59421589 Msa0173950:CDS
TCATGCCAGTGTTGGTTAGG+TGG 0.476834 1_4:+59421764 Msa0173950:three_prime_UTR
CAATCATATGCTACAGAGAT+CGG 0.479919 1_4:-59416947 None:intergenic
CACGGCTCTTATGGAAATCA+TGG 0.485343 1_4:+59421816 Msa0173950:three_prime_UTR
ACCTTAACAGTGGAAATAAA+GGG 0.493335 1_4:-59417004 None:intergenic
TTTCAGCAGTGCCACAAGGT+TGG 0.499342 1_4:-59421896 None:intergenic
TGAGATGGTTTGACAAAGGC+AGG 0.502974 1_4:-59422028 None:intergenic
ATTGGAAGAGAGTGAAGTTG+AGG 0.504072 1_4:-59415982 None:intergenic
CTAGCATTGCGATTCAAAGA+TGG 0.510418 1_4:-59415921 None:intergenic
ATGTGATTCACAATTTCATA+CGG 0.520319 1_4:+59415792 Msa0173950:five_prime_UTR
TTCTGATCGTGAAGCCATCC+CGG 0.524092 1_4:+59416973 Msa0173950:five_prime_UTR
TACGGTTATCATGCCAGTGT+TGG 0.537477 1_4:+59421756 Msa0173950:three_prime_UTR
AATCATATGCTACAGAGATC+GGG 0.541146 1_4:-59416946 None:intergenic
GAAAGTAGGAAGCTGTGGTT+GGG 0.541318 1_4:-59416873 None:intergenic
AGAGTACTTACCGATGCCAC+TGG 0.543027 1_4:-59420825 None:intergenic
TGAAAGTAGGAAGCTGTGGT+TGG 0.543922 1_4:-59416874 None:intergenic
CGTCGCGGTCGGAGAGCAGA+AGG 0.545470 1_4:+59415819 Msa0173950:five_prime_UTR
GGAGCTTCTTAGTCCTGAGA+TGG 0.548161 1_4:-59422043 None:intergenic
TTGGCTTGCTCGTAATATGC+AGG 0.548555 1_4:+59417428 Msa0173950:five_prime_UTR
TCGTCTAATTCTAAAACGAA+TGG 0.551000 1_4:-59416765 None:intergenic
TCATATTCCTCTAATAGGGA+TGG 0.554439 1_4:+59416711 Msa0173950:five_prime_UTR
ACAGCTGACAGTCTCATATG+AGG 0.555155 1_4:+59420785 Msa0173950:intron
CGAATGCAGGGTTAAGATGG+AGG 0.555585 1_4:+59416916 Msa0173950:five_prime_UTR
AAAGAATATTTCCGAATGCA+GGG 0.557911 1_4:+59416904 Msa0173950:five_prime_UTR
GCTGTGCGATTCTATCCAAA+AGG 0.563786 1_4:+59420301 Msa0173950:CDS
ATCCATTGGCGATCTCTGGA+TGG 0.567929 1_4:+59417559 Msa0173950:CDS
CTCCAAATCAGAAAATCCAT+TGG 0.568507 1_4:+59417545 Msa0173950:CDS
ATTTGGAGTGGGCTGCAAGA+AGG 0.569657 1_4:-59417530 None:intergenic
ATTTCATAAAGATTTGGGTA+CGG 0.572664 1_4:+59421738 Msa0173950:three_prime_UTR
TGTACAAATTACAATACAGC+TGG 0.574526 1_4:-59422085 None:intergenic
AATTACAATACAGCTGGTAT+GGG 0.574781 1_4:-59422079 None:intergenic
ATCGTGAAGCCATCCCGGAA+TGG 0.574790 1_4:+59416978 Msa0173950:five_prime_UTR
ACTTCTACAAGGCATGAAGA+AGG 0.576876 1_4:-59420325 None:intergenic
TGGAAGAGAGTGAAGTTGAG+GGG 0.576892 1_4:-59415980 None:intergenic
GAGTCTGAAGAAGAAGCGAT+TGG 0.577061 1_4:-59416000 None:intergenic
TGTCTTTCTATACAATAATG+AGG 0.578333 1_4:+59422111 Msa0173950:three_prime_UTR
TCATTGAAAGTAGGAAGCTG+TGG 0.581390 1_4:-59416878 None:intergenic
AAATACTCCAACGTCTTGAA+GGG 0.584303 1_4:-59421946 None:intergenic
ACTTCAAGGACCATTGCGAC+AGG 0.589808 1_4:-59417374 None:intergenic
GACCATCCAGAGATCGCCAA+TGG 0.590298 1_4:-59417561 None:intergenic
TAAAATGCCTTACTTCTACA+AGG 0.595038 1_4:-59420336 None:intergenic
AGCAGAAGATATGTTAAACC+CGG 0.595234 1_4:+59421869 Msa0173950:three_prime_UTR
ACAAACCTGACCTGTCGCAA+TGG 0.598815 1_4:+59417364 Msa0173950:five_prime_UTR
TAAATCCACCTAACCAACAC+TGG 0.598962 1_4:-59421769 None:intergenic
GCCACTGGAGCTAAAAGTTG+AGG 0.601215 1_4:-59420810 None:intergenic
CTTGAAGGTTTACTTAAACG+TGG 0.606486 1_4:+59421604 Msa0173950:CDS
GCTTCTAGAAGTAAAATTGG+CGG 0.606768 1_4:-59415955 None:intergenic
GCTTAGAAGAAGAAGTGTGA+GGG 0.616908 1_4:-59416022 None:intergenic
AAGAAGCAAAAGTATCAGGT+AGG 0.620203 1_4:-59417460 None:intergenic
AATCCTGCCACTCCATGACA+GGG 0.620352 1_4:-59416079 None:intergenic
CGCTTAGAAGAAGAAGTGTG+AGG 0.627236 1_4:-59416023 None:intergenic
GTCCTGAGATGGTTTGACAA+AGG 0.631492 1_4:-59422032 None:intergenic
CATACGGACATCGTCGCGGT+CGG 0.639263 1_4:+59415808 Msa0173950:five_prime_UTR
AACCCGGAATCCCAACCTTG+TGG 0.642268 1_4:+59421885 Msa0173950:three_prime_UTR
TAAGCTACCCTTCAAGACGT+TGG 0.644508 1_4:+59421939 Msa0173950:three_prime_UTR
AAAGGGCATCCATTCCGGGA+TGG 0.645388 1_4:-59416987 None:intergenic
CTTGAATCGATGGAAAGTTG+AGG 0.645424 1_4:-59416048 None:intergenic
ATTTCATACGGACATCGTCG+CGG 0.684145 1_4:+59415804 Msa0173950:five_prime_UTR
GAGCAAGCACACCTTAACAG+TGG 0.691318 1_4:-59417014 None:intergenic
ATCCTGCCACTCCATGACAG+GGG 0.702823 1_4:-59416078 None:intergenic
TGATTTCCATAAGAGCCGTG+AGG 0.764444 1_4:-59421813 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTTTTTATGTAATTT+TGG - chr1_4:59419734-59419753 None:intergenic 10.0%
!! AAAGAAAAAATAAGCAAAAT+CGG - chr1_4:59416285-59416304 None:intergenic 15.0%
!! AATGTTGTATATTTCTTAAT+TGG + chr1_4:59416810-59416829 Msa0173950:five_prime_UTR 15.0%
!! TTGATTAACTATATTAACTT+TGG + chr1_4:59417940-59417959 Msa0173950:intron 15.0%
!! AAATGAAACAAAATAAAGAA+GGG - chr1_4:59418007-59418026 None:intergenic 15.0%
!! ATTGCAAATGTAAATAAAAA+TGG + chr1_4:59418775-59418794 Msa0173950:intron 15.0%
!! ATAAATAACTAATATGAAAG+AGG + chr1_4:59419301-59419320 Msa0173950:intron 15.0%
!! TAAATAACTAATATGAAAGA+GGG + chr1_4:59419302-59419321 Msa0173950:intron 15.0%
!! AATGTTCTAATTAATAATCA+AGG + chr1_4:59419855-59419874 Msa0173950:intron 15.0%
!! TCATCAATGTAAAATAAAAT+AGG - chr1_4:59420382-59420401 None:intergenic 15.0%
!!! AAAACATCACATTTTTATAA+AGG - chr1_4:59420853-59420872 None:intergenic 15.0%
!!! ATATATTGATAGTATTGATA+AGG + chr1_4:59421213-59421232 Msa0173950:intron 15.0%
!!! TATATTGATAGTATTGATAA+GGG + chr1_4:59421214-59421233 Msa0173950:intron 15.0%
!!! TGTATGTTCATTTTAAAAAA+TGG - chr1_4:59421690-59421709 None:intergenic 15.0%
!! ATTGAATTTCATAAAGATTT+GGG + chr1_4:59421733-59421752 Msa0173950:three_prime_UTR 15.0%
!!! GTGAATCACATAAATTATTT+TGG - chr1_4:59415783-59415802 None:intergenic 20.0%
!!! GCTTTTCTATTTTATATGTA+TGG + chr1_4:59416131-59416150 Msa0173950:intron 20.0%
!! CTCAAATTATTATAAACCAT+TGG - chr1_4:59416442-59416461 None:intergenic 20.0%
!! CAATGGTTTATAATAATTTG+AGG + chr1_4:59416440-59416459 Msa0173950:intron 20.0%
!! TATTAGAGGAATATGAAATA+AGG - chr1_4:59416707-59416726 None:intergenic 20.0%
!! TTATTTCATATTCCTCTAAT+AGG + chr1_4:59416706-59416725 Msa0173950:five_prime_UTR 20.0%
!! TATTTCATATTCCTCTAATA+GGG + chr1_4:59416707-59416726 Msa0173950:five_prime_UTR 20.0%
!!! TTCTTTTTTTCATTGAAAGT+AGG - chr1_4:59416890-59416909 None:intergenic 20.0%
!! AATATCATAATCACTATTGT+TGG + chr1_4:59417066-59417085 Msa0173950:intron 20.0%
!! AATTGAAAATCTTTACCTTA+TGG + chr1_4:59417101-59417120 Msa0173950:intron 20.0%
!! TTAATGAAGAAATATGTACA+GGG - chr1_4:59417724-59417743 None:intergenic 20.0%
!! ATTAATGAAGAAATATGTAC+AGG - chr1_4:59417725-59417744 None:intergenic 20.0%
!! AATGAAACAAAATAAAGAAG+GGG - chr1_4:59418006-59418025 None:intergenic 20.0%
!! GAAATGAAACAAAATAAAGA+AGG - chr1_4:59418008-59418027 None:intergenic 20.0%
!! TAAATGAGTAATGAAAAAGA+AGG + chr1_4:59418109-59418128 Msa0173950:intron 20.0%
!! TATTAAGGATGTTTGTAAAA+TGG + chr1_4:59418726-59418745 Msa0173950:intron 20.0%
!! ATTAAGGATGTTTGTAAAAT+GGG + chr1_4:59418727-59418746 Msa0173950:intron 20.0%
!! AATGTAAATAAAAATGGTTC+AGG + chr1_4:59418781-59418800 Msa0173950:intron 20.0%
!! ACAAATTAACAAAATAGCTT+AGG + chr1_4:59418912-59418931 Msa0173950:intron 20.0%
!!! TTAAAACCTTTGATGATTAT+AGG - chr1_4:59418997-59419016 None:intergenic 20.0%
!! ATTTATACTGTTCAATCTAA+CGG - chr1_4:59419070-59419089 None:intergenic 20.0%
!!! TACTCTAAAATCAGTTATAT+TGG + chr1_4:59419126-59419145 Msa0173950:intron 20.0%
!!! ACTCTAAAATCAGTTATATT+GGG + chr1_4:59419127-59419146 Msa0173950:intron 20.0%
!! TTATACTGAATAAACTAGAA+TGG + chr1_4:59419178-59419197 Msa0173950:intron 20.0%
!!! TATGTTTTTGCTTTGATATT+AGG + chr1_4:59419907-59419926 Msa0173950:intron 20.0%
!! TTGATATTAGGTAAAACTTA+TGG + chr1_4:59419919-59419938 Msa0173950:intron 20.0%
!!! AGATTATGTTTTATGACAAA+CGG - chr1_4:59420119-59420138 None:intergenic 20.0%
!! TTAACTTCTAACATGAAATT+AGG + chr1_4:59420652-59420671 Msa0173950:intron 20.0%
!!! ATACCCAATTTTTCATTATT+TGG + chr1_4:59420906-59420925 Msa0173950:intron 20.0%
!!! TACCCAATTTTTCATTATTT+GGG + chr1_4:59420907-59420926 Msa0173950:intron 20.0%
!! CTTTCCTAATTTATTTGTTT+GGG + chr1_4:59420961-59420980 Msa0173950:intron 20.0%
!!! ATATTGATAGTATTGATAAG+GGG + chr1_4:59421215-59421234 Msa0173950:intron 20.0%
!!! TGTAGATAGTCTTATATTTA+AGG + chr1_4:59421276-59421295 Msa0173950:intron 20.0%
!! TTGTAAACGATCTTATATTT+AGG + chr1_4:59421311-59421330 Msa0173950:intron 20.0%
!! TGTAAACGATCTTATATTTA+GGG + chr1_4:59421312-59421331 Msa0173950:intron 20.0%
!!! TTCCAAAAAATATCAAGTTT+TGG + chr1_4:59421406-59421425 Msa0173950:intron 20.0%
!!! AACCAAAACTTGATATTTTT+TGG - chr1_4:59421411-59421430 None:intergenic 20.0%
!! GATTGAATTTCATAAAGATT+TGG + chr1_4:59421732-59421751 Msa0173950:three_prime_UTR 20.0%
!! AGGAATTAACACTTAAAAAT+GGG - chr1_4:59421796-59421815 None:intergenic 20.0%
! ATGTGATTCACAATTTCATA+CGG + chr1_4:59415792-59415811 Msa0173950:five_prime_UTR 25.0%
! TAGAAAAGCGAAAGAAAAAA+AGG - chr1_4:59416120-59416139 None:intergenic 25.0%
! TTCTTTGTAATATATGCACA+AGG + chr1_4:59416315-59416334 Msa0173950:intron 25.0%
! TATTATAAACCATTGGAAAG+AGG - chr1_4:59416435-59416454 None:intergenic 25.0%
!! ACTGTTTTCATAATCTATCT+TGG - chr1_4:59416558-59416577 None:intergenic 25.0%
!! TTAAGTTGCTTATCCAAATA+TGG + chr1_4:59416681-59416700 Msa0173950:five_prime_UTR 25.0%
! ATATGAAATAAGGCCATATT+TGG - chr1_4:59416697-59416716 None:intergenic 25.0%
!!! ATTAGCCTTGTAATTAATCA+GGG - chr1_4:59417049-59417068 None:intergenic 25.0%
!!! TATTAGCCTTGTAATTAATC+AGG - chr1_4:59417050-59417069 None:intergenic 25.0%
!!! TTTGATTTTATGCAAAACGT+TGG + chr1_4:59417318-59417337 Msa0173950:intron 25.0%
! AATCAAATGTTTCCTAATGT+TGG - chr1_4:59417671-59417690 None:intergenic 25.0%
!!! TTTTAATTTAGCAGATCACT+TGG - chr1_4:59417845-59417864 None:intergenic 25.0%
!!! TACACTTGATAATGCTTAAT+TGG + chr1_4:59418046-59418065 Msa0173950:intron 25.0%
! CATTACTCATTTATGAGAAA+TGG - chr1_4:59418102-59418121 None:intergenic 25.0%
!!! TGTTTGATAATGTATGTTCT+AGG + chr1_4:59418268-59418287 Msa0173950:intron 25.0%
!! CCAACATTTTATCCATTTAT+AGG - chr1_4:59418409-59418428 None:intergenic 25.0%
! CCTATAAATGGATAAAATGT+TGG + chr1_4:59418406-59418425 Msa0173950:intron 25.0%
!! TAAAATGTTGGCTATATAAG+TGG + chr1_4:59418418-59418437 Msa0173950:intron 25.0%
!! AAAATGTTGGCTATATAAGT+GGG + chr1_4:59418419-59418438 Msa0173950:intron 25.0%
! TTATTCTTAGGCATAATGTT+GGG - chr1_4:59418554-59418573 None:intergenic 25.0%
! TTTATTCTTAGGCATAATGT+TGG - chr1_4:59418555-59418574 None:intergenic 25.0%
! AGCTCAAAATGTTTATTCTT+AGG - chr1_4:59418566-59418585 None:intergenic 25.0%
! TTAAGGATGTTTGTAAAATG+GGG + chr1_4:59418728-59418747 Msa0173950:intron 25.0%
! AAAAATGGTTCAGGTAAAAT+TGG + chr1_4:59418790-59418809 Msa0173950:intron 25.0%
! GGAATTATAATCAGAAAAGA+GGG - chr1_4:59418957-59418976 None:intergenic 25.0%
! GGTTGTGATAATTGAATTAA+CGG - chr1_4:59419022-59419041 None:intergenic 25.0%
! TCATAAAGATTAAGAGTTAC+AGG + chr1_4:59419204-59419223 Msa0173950:intron 25.0%
!!! ATGTAATTTTGGTTGAGTTT+AGG - chr1_4:59419723-59419742 None:intergenic 25.0%
! TAATAATCAAGGTTGCATTA+TGG + chr1_4:59419866-59419885 Msa0173950:intron 25.0%
! TTACTTTGATGCCATATTTA+GGG + chr1_4:59420437-59420456 Msa0173950:intron 25.0%
! CATATTTAGGGGAAAAAATT+GGG + chr1_4:59420449-59420468 Msa0173950:intron 25.0%
! TAGAATGAGAAACTTACAAT+TGG - chr1_4:59420484-59420503 None:intergenic 25.0%
!!! GTGATGTTTTTTACAACTTT+AGG + chr1_4:59420863-59420882 Msa0173950:intron 25.0%
! AAAAATTGGGTATTCTTTCA+CGG - chr1_4:59420899-59420918 None:intergenic 25.0%
!! ACCCAATTTTTCATTATTTG+GGG + chr1_4:59420908-59420927 Msa0173950:intron 25.0%
! TCCCCAAATAATGAAAAATT+GGG - chr1_4:59420912-59420931 None:intergenic 25.0%
!! AATTTTTCATTATTTGGGGA+CGG + chr1_4:59420912-59420931 Msa0173950:intron 25.0%
! GCTTTCCTAATTTATTTGTT+TGG + chr1_4:59420960-59420979 Msa0173950:intron 25.0%
! AGAACCCAAACAAATAAATT+AGG - chr1_4:59420968-59420987 None:intergenic 25.0%
!!! AGACTAGTTTACAAAAATCA+CGG + chr1_4:59421085-59421104 Msa0173950:intron 25.0%
! TTTGTACACAAATGACAATT+TGG - chr1_4:59421162-59421181 None:intergenic 25.0%
! TTACTAACTACTCAATTTGA+AGG + chr1_4:59421439-59421458 Msa0173950:intron 25.0%
! TTAAGTAAACCTTCAAGAAA+TGG - chr1_4:59421601-59421620 None:intergenic 25.0%
! TATGAAATTCAATCAGTGTT+TGG - chr1_4:59421726-59421745 None:intergenic 25.0%
! ATTTCATAAAGATTTGGGTA+CGG + chr1_4:59421738-59421757 Msa0173950:three_prime_UTR 25.0%
! GAGGAATTAACACTTAAAAA+TGG - chr1_4:59421797-59421816 None:intergenic 25.0%
!!! TTTTAAGTGTTAATTCCTCA+CGG + chr1_4:59421798-59421817 Msa0173950:three_prime_UTR 25.0%
! TGTCTTTCTATACAATAATG+AGG + chr1_4:59422111-59422130 Msa0173950:three_prime_UTR 25.0%
! GAAGCTTCTAGAAGTAAAAT+TGG - chr1_4:59415961-59415980 None:intergenic 30.0%
GAATATCTATGCTAATTGCA+AGG - chr1_4:59416409-59416428 None:intergenic 30.0%
!! GTTTTCACCTTATTTCCATA+AGG + chr1_4:59416529-59416548 Msa0173950:intron 30.0%
AAAAATTCCATCCCTATTAG+AGG - chr1_4:59416721-59416740 None:intergenic 30.0%
CTAAAACGAATGGAACAAAA+TGG - chr1_4:59416758-59416777 None:intergenic 30.0%
!! TCGTCTAATTCTAAAACGAA+TGG - chr1_4:59416768-59416787 None:intergenic 30.0%
AAAAGAATATTTCCGAATGC+AGG + chr1_4:59416903-59416922 Msa0173950:five_prime_UTR 30.0%
AAAGAATATTTCCGAATGCA+GGG + chr1_4:59416904-59416923 Msa0173950:five_prime_UTR 30.0%
ACCTTAACAGTGGAAATAAA+GGG - chr1_4:59417007-59417026 None:intergenic 30.0%
TGTAATTAATCAGGGTTAGA+AGG - chr1_4:59417041-59417060 None:intergenic 30.0%
TCTAACCCTGATTAATTACA+AGG + chr1_4:59417041-59417060 Msa0173950:intron 30.0%
! TAGATTAAACTGTGTTGATG+AGG + chr1_4:59417170-59417189 Msa0173950:intron 30.0%
!! TGCCTTTTCTTTGGAAATTT+CGG + chr1_4:59417641-59417660 Msa0173950:intron 30.0%
TACCGAAATTTCCAAAGAAA+AGG - chr1_4:59417646-59417665 None:intergenic 30.0%
GATAAACTACAGTAATGCTT+GGG - chr1_4:59417774-59417793 None:intergenic 30.0%
AGATAAACTACAGTAATGCT+TGG - chr1_4:59417775-59417794 None:intergenic 30.0%
! GCACATCATCAAGTATTTTT+AGG - chr1_4:59417815-59417834 None:intergenic 30.0%
!! TCTTTTTGTTTACCGAACAA+AGG - chr1_4:59417891-59417910 None:intergenic 30.0%
TTTGTTCGGTAAACAAAAAG+AGG + chr1_4:59417890-59417909 Msa0173950:intron 30.0%
CATTATCAAGTGTAACCTAA+TGG - chr1_4:59418040-59418059 None:intergenic 30.0%
TGAGTAATGAAAAAGAAGGA+AGG + chr1_4:59418113-59418132 Msa0173950:intron 30.0%
GAGTAATGAAAAAGAAGGAA+GGG + chr1_4:59418114-59418133 Msa0173950:intron 30.0%
GTTCCCAGAGTAAAAAAAAA+CGG + chr1_4:59418157-59418176 Msa0173950:intron 30.0%
CAAAATACTGCTATAAGAAC+TGG - chr1_4:59418316-59418335 None:intergenic 30.0%
! TTCTTATAGCAGTATTTTGC+TGG + chr1_4:59418317-59418336 Msa0173950:intron 30.0%
AATACGTAAAAGCTGGATAT+TGG - chr1_4:59418352-59418371 None:intergenic 30.0%
! AATATCCAGCTTTTACGTAT+TGG + chr1_4:59418351-59418370 Msa0173950:intron 30.0%
TATCCATTTATAGGCAATGT+GGG - chr1_4:59418400-59418419 None:intergenic 30.0%
TTATCCATTTATAGGCAATG+TGG - chr1_4:59418401-59418420 None:intergenic 30.0%
! AAATGTTGGCTATATAAGTG+GGG + chr1_4:59418420-59418439 Msa0173950:intron 30.0%
TATTCTTAGGCATAATGTTG+GGG - chr1_4:59418553-59418572 None:intergenic 30.0%
TTTATAAGATTCGTATCCAC+AGG + chr1_4:59418669-59418688 Msa0173950:intron 30.0%
TTATAAGATTCGTATCCACA+GGG + chr1_4:59418670-59418689 Msa0173950:intron 30.0%
CGGGAATGTCATTATTATTA+AGG + chr1_4:59418711-59418730 Msa0173950:intron 30.0%
TAAGGATGTTTGTAAAATGG+GGG + chr1_4:59418729-59418748 Msa0173950:intron 30.0%
GGGAATTATAATCAGAAAAG+AGG - chr1_4:59418958-59418977 None:intergenic 30.0%
TTATAATTCCCTAATCCCTT+AGG + chr1_4:59418967-59418986 Msa0173950:intron 30.0%
ATGATTATAGGTTCACCTAA+GGG - chr1_4:59418985-59419004 None:intergenic 30.0%
ATCTCTTAACCTAATCACAA+AGG + chr1_4:59419255-59419274 Msa0173950:intron 30.0%
AGGGATTCATTACATGAAAT+TGG + chr1_4:59419321-59419340 Msa0173950:intron 30.0%
! CATTACATGAAATTGGTAAC+CGG + chr1_4:59419328-59419347 Msa0173950:intron 30.0%
CTTTAGTCACGTAAAAAATC+GGG - chr1_4:59419587-59419606 None:intergenic 30.0%
GCTTTAGTCACGTAAAAAAT+CGG - chr1_4:59419588-59419607 None:intergenic 30.0%
! AGTTTGAAGCTACAAAAGAA+CGG - chr1_4:59419688-59419707 None:intergenic 30.0%
TAGAACATTTCACTGCTATA+AGG - chr1_4:59419844-59419863 None:intergenic 30.0%
AAAATGCAATGCTTCAATCA+TGG + chr1_4:59419999-59420018 Msa0173950:intron 30.0%
TTTAATGCAAACAGAGAACA+TGG - chr1_4:59420244-59420263 None:intergenic 30.0%
TAATTGTCTGATTTCTCATG+TGG + chr1_4:59420271-59420290 Msa0173950:intron 30.0%
TAAAATGCCTTACTTCTACA+AGG - chr1_4:59420339-59420358 None:intergenic 30.0%
CTTACTTTGATGCCATATTT+AGG + chr1_4:59420436-59420455 Msa0173950:intron 30.0%
TACTTTGATGCCATATTTAG+GGG + chr1_4:59420438-59420457 Msa0173950:intron 30.0%
!!! CCAATTTTTTCCCCTAAATA+TGG - chr1_4:59420451-59420470 None:intergenic 30.0%
CCATATTTAGGGGAAAAAAT+TGG + chr1_4:59420448-59420467 Msa0173950:intron 30.0%
GAGAAACTTACAATTGGTAT+TGG - chr1_4:59420478-59420497 None:intergenic 30.0%
! ATGTTAGAAGTTAAAAGCGT+GGG - chr1_4:59420646-59420665 None:intergenic 30.0%
GTCCCCAAATAATGAAAAAT+TGG - chr1_4:59420913-59420932 None:intergenic 30.0%
CGGATAAAAAGTAAGAAAAG+TGG + chr1_4:59420932-59420951 Msa0173950:intron 30.0%
CTAAATGAACAACTCACTTT+AGG + chr1_4:59420995-59421014 Msa0173950:intron 30.0%
AACGATCTTATATTTAGGGA+TGG + chr1_4:59421316-59421335 Msa0173950:intron 30.0%
ATCTTATATTTAGGGATGGA+GGG + chr1_4:59421320-59421339 Msa0173950:intron 30.0%
TGAAAAGTGAGATTAACGAA+TGG - chr1_4:59421473-59421492 None:intergenic 30.0%
! AAATGATTGTCCTGATTTTC+AGG + chr1_4:59421661-59421680 Msa0173950:exon 30.0%
! AATGATTGTCCTGATTTTCA+GGG + chr1_4:59421662-59421681 Msa0173950:exon 30.0%
AATTACAATACAGCTGGTAT+GGG - chr1_4:59422082-59422101 None:intergenic 30.0%
AAATTACAATACAGCTGGTA+TGG - chr1_4:59422083-59422102 None:intergenic 30.0%
TGTACAAATTACAATACAGC+TGG - chr1_4:59422088-59422107 None:intergenic 30.0%
TGAAAAAGAGCTTATGACGA+CGG - chr1_4:59415895-59415914 None:intergenic 35.0%
! GCTTCTAGAAGTAAAATTGG+CGG - chr1_4:59415958-59415977 None:intergenic 35.0%
AGTTATCATCACAAGTGCTT+TGG - chr1_4:59416477-59416496 None:intergenic 35.0%
TTGGAGACCTTATGGAAATA+AGG - chr1_4:59416539-59416558 None:intergenic 35.0%
AATCTATCTTGGAGACCTTA+TGG - chr1_4:59416547-59416566 None:intergenic 35.0%
TCATATTCCTCTAATAGGGA+TGG + chr1_4:59416711-59416730 Msa0173950:five_prime_UTR 35.0%
!!! CAGTTTTTAGCACTTCTGTT+TGG + chr1_4:59416836-59416855 Msa0173950:five_prime_UTR 35.0%
AATCATATGCTACAGAGATC+GGG - chr1_4:59416949-59416968 None:intergenic 35.0%
CAATCATATGCTACAGAGAT+CGG - chr1_4:59416950-59416969 None:intergenic 35.0%
CACCTTAACAGTGGAAATAA+AGG - chr1_4:59417008-59417027 None:intergenic 35.0%
TCACATGCTATGATTCCATA+AGG - chr1_4:59417119-59417138 None:intergenic 35.0%
ACAGTTTAATCTAGTCTGAC+AGG - chr1_4:59417163-59417182 None:intergenic 35.0%
! TCCTTGAAGTATAAGGCATT+TGG + chr1_4:59417387-59417406 Msa0173950:five_prime_UTR 35.0%
ACCAAATGCCTTATACTTCA+AGG - chr1_4:59417391-59417410 None:intergenic 35.0%
GTCAGAATATTGAGTTCTCT+TGG + chr1_4:59417409-59417428 Msa0173950:five_prime_UTR 35.0%
!! AAGAAGCAAAAGTATCAGGT+AGG - chr1_4:59417463-59417482 None:intergenic 35.0%
!! CGAAAAGAAGCAAAAGTATC+AGG - chr1_4:59417467-59417486 None:intergenic 35.0%
!!! TGGATTTTCTGATTTGGAGT+GGG - chr1_4:59417544-59417563 None:intergenic 35.0%
!!! ATGGATTTTCTGATTTGGAG+TGG - chr1_4:59417545-59417564 None:intergenic 35.0%
CTCCAAATCAGAAAATCCAT+TGG + chr1_4:59417545-59417564 Msa0173950:CDS 35.0%
!! GTGCTTTATTGCCTTTTCTT+TGG + chr1_4:59417632-59417651 Msa0173950:intron 35.0%
AATTTCGGTAGTCCAACATT+AGG + chr1_4:59417656-59417675 Msa0173950:intron 35.0%
TCTTGCCATTAACCTTTGTT+CGG + chr1_4:59417876-59417895 Msa0173950:intron 35.0%
GTTTACCGAACAAAGGTTAA+TGG - chr1_4:59417884-59417903 None:intergenic 35.0%
TGTAACCTAATGGCATGTTT+CGG - chr1_4:59418030-59418049 None:intergenic 35.0%
!!! CAGCCGTTTTTTTTTACTCT+GGG - chr1_4:59418163-59418182 None:intergenic 35.0%
!!! TCAGCCGTTTTTTTTTACTC+TGG - chr1_4:59418164-59418183 None:intergenic 35.0%
GTTTACTAATTCAGTAGCGT+AGG + chr1_4:59418197-59418216 Msa0173950:intron 35.0%
AGGTATTCTGATATATGTGC+TGG + chr1_4:59418232-59418251 Msa0173950:intron 35.0%
! ATAGCAGTATTTTGCTGGTA+AGG + chr1_4:59418322-59418341 Msa0173950:intron 35.0%
AAAAGCCAATACGTAAAAGC+TGG - chr1_4:59418359-59418378 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+AGG - chr1_4:59418449-59418468 None:intergenic 35.0%
CCTATATACCTAATGCCTTA+AGG + chr1_4:59418446-59418465 Msa0173950:intron 35.0%
! TACCTAATGCCTTAAGGTTT+TGG + chr1_4:59418452-59418471 Msa0173950:intron 35.0%
! ACCTAATGCCTTAAGGTTTT+GGG + chr1_4:59418453-59418472 Msa0173950:intron 35.0%
AAGGATGTTTGTAAAATGGG+GGG + chr1_4:59418730-59418749 Msa0173950:intron 35.0%
TGGTTTGAGAAATGATAGAG+AGG + chr1_4:59418810-59418829 Msa0173950:intron 35.0%
CGTTCGTAAACTTAAGAAAC+AGG - chr1_4:59418878-59418897 None:intergenic 35.0%
ATAATCAGAAAAGAGGGCTT+AGG - chr1_4:59418951-59418970 None:intergenic 35.0%
GATGATTATAGGTTCACCTA+AGG - chr1_4:59418986-59419005 None:intergenic 35.0%
GGTGAACCTATAATCATCAA+AGG + chr1_4:59418988-59419007 Msa0173950:intron 35.0%
! TCAATCTAACGGACAATCTA+GGG - chr1_4:59419059-59419078 None:intergenic 35.0%
! TTCAATCTAACGGACAATCT+AGG - chr1_4:59419060-59419079 None:intergenic 35.0%
TAGCTAGATCCTTTGTGATT+AGG - chr1_4:59419267-59419286 None:intergenic 35.0%
!! TAACCGGATTTGAGTTTTGA+TGG + chr1_4:59419344-59419363 Msa0173950:intron 35.0%
AGACCATCAAAACTCAAATC+CGG - chr1_4:59419350-59419369 None:intergenic 35.0%
!! TGGAGAAAGAAACTGACTTT+TGG - chr1_4:59419399-59419418 None:intergenic 35.0%
!! AAAGAACGGATTTTGAGTAC+TGG - chr1_4:59419674-59419693 None:intergenic 35.0%
!!! ACTGCAGATCTCTTGTTTTA+AGG + chr1_4:59419801-59419820 Msa0173950:intron 35.0%
!!! CTGCAGATCTCTTGTTTTAA+GGG + chr1_4:59419802-59419821 Msa0173950:intron 35.0%
!!! TCTTGTTTTAAGGGAGTAGA+AGG + chr1_4:59419811-59419830 Msa0173950:intron 35.0%
AGTGGCTAGAAAACACATTT+CGG + chr1_4:59420059-59420078 Msa0173950:intron 35.0%
CATGTTAGAAGTTAAAAGCG+TGG - chr1_4:59420647-59420666 None:intergenic 35.0%
TGCTTGACTAAAAGCTGAAT+GGG - chr1_4:59420731-59420750 None:intergenic 35.0%
! AGTCTTGTAAAACGAACGAA+GGG - chr1_4:59421070-59421089 None:intergenic 35.0%
!! TAGTCTTGTAAAACGAACGA+AGG - chr1_4:59421071-59421090 None:intergenic 35.0%
GATCTTATATTTAGGGATGG+AGG + chr1_4:59421319-59421338 Msa0173950:intron 35.0%
!! TCACTTTTCACCAGTTACAA+TGG + chr1_4:59421483-59421502 Msa0173950:intron 35.0%
AGATAAGAGTCCATTGTAAC+TGG - chr1_4:59421496-59421515 None:intergenic 35.0%
CTTGAAGGTTTACTTAAACG+TGG + chr1_4:59421604-59421623 Msa0173950:CDS 35.0%
AGGTTTACTTAAACGTGGTT+TGG + chr1_4:59421609-59421628 Msa0173950:CDS 35.0%
! TTTGTAGCTTTTTGCAAACG+TGG - chr1_4:59421644-59421663 None:intergenic 35.0%
AGCAGAAGATATGTTAAACC+CGG + chr1_4:59421869-59421888 Msa0173950:three_prime_UTR 35.0%
AAATACTCCAACGTCTTGAA+GGG - chr1_4:59421949-59421968 None:intergenic 35.0%
CTAGCATTGCGATTCAAAGA+TGG - chr1_4:59415924-59415943 None:intergenic 40.0%
TTGGAAGAGAGTGAAGTTGA+GGG - chr1_4:59415984-59416003 None:intergenic 40.0%
ATTGGAAGAGAGTGAAGTTG+AGG - chr1_4:59415985-59416004 None:intergenic 40.0%
! GCTTAGAAGAAGAAGTGTGA+GGG - chr1_4:59416025-59416044 None:intergenic 40.0%
CTTGAATCGATGGAAAGTTG+AGG - chr1_4:59416051-59416070 None:intergenic 40.0%
ATATTCGTGCCTCTTTCCAA+TGG + chr1_4:59416423-59416442 Msa0173950:intron 40.0%
TCATTGAAAGTAGGAAGCTG+TGG - chr1_4:59416881-59416900 None:intergenic 40.0%
!! AAATAAAGGGCATCCATTCC+GGG - chr1_4:59416994-59417013 None:intergenic 40.0%
!! GAAATAAAGGGCATCCATTC+CGG - chr1_4:59416995-59417014 None:intergenic 40.0%
! GCCCTTTATTTCCACTGTTA+AGG + chr1_4:59417003-59417022 Msa0173950:five_prime_UTR 40.0%
TCTGACAGGAAAAGAGTCAA+AGG - chr1_4:59417149-59417168 None:intergenic 40.0%
GTCTGGCAATATCTGCAAAA+TGG - chr1_4:59417346-59417365 None:intergenic 40.0%
GCAATGGTCCTTGAAGTATA+AGG + chr1_4:59417380-59417399 Msa0173950:five_prime_UTR 40.0%
!! CGCCAATGGATTTTCTGATT+TGG - chr1_4:59417550-59417569 None:intergenic 40.0%
CATTTCCGAAACATGCCATT+AGG + chr1_4:59418022-59418041 Msa0173950:intron 40.0%
AGCGTAGGTCACTTAAAAGA+AGG + chr1_4:59418212-59418231 Msa0173950:intron 40.0%
ACTGCTATAAGAACTGGTCA+AGG - chr1_4:59418310-59418329 None:intergenic 40.0%
AGTCCCACATTGCCTATAAA+TGG + chr1_4:59418394-59418413 Msa0173950:intron 40.0%
! ACCCAAAACCTTAAGGCATT+AGG - chr1_4:59418457-59418476 None:intergenic 40.0%
!!! TAATGCCTTAAGGTTTTGGG+TGG + chr1_4:59418456-59418475 Msa0173950:intron 40.0%
GAGTCTGACATGATATGAGT+AGG + chr1_4:59418597-59418616 Msa0173950:intron 40.0%
GGACTGTTTCAACTTCTACT+CGG + chr1_4:59418691-59418710 Msa0173950:intron 40.0%
GACTGTTTCAACTTCTACTC+GGG + chr1_4:59418692-59418711 Msa0173950:intron 40.0%
GAAATGATAGAGAGGTGACT+AGG + chr1_4:59418818-59418837 Msa0173950:intron 40.0%
AAAAGAGGGCTTAGGATCAA+GGG - chr1_4:59418943-59418962 None:intergenic 40.0%
TAGGTTCACCTAAGGGATTA+GGG - chr1_4:59418978-59418997 None:intergenic 40.0%
ATAGGTTCACCTAAGGGATT+AGG - chr1_4:59418979-59418998 None:intergenic 40.0%
ACAAAGGATCTAGCTACTCA+TGG + chr1_4:59419271-59419290 Msa0173950:intron 40.0%
!!! AAGAAACTGACTTTTGGAGC+TGG - chr1_4:59419393-59419412 None:intergenic 40.0%
TCTCCAAAATTTCGAACCCT+TGG + chr1_4:59419413-59419432 Msa0173950:intron 40.0%
! AAGCCAAGGGTTCGAAATTT+TGG - chr1_4:59419419-59419438 None:intergenic 40.0%
CATAGAAACCTGATGACACT+AGG - chr1_4:59419773-59419792 None:intergenic 40.0%
GGTTGTGTTATCTTTGTGCT+TGG + chr1_4:59419940-59419959 Msa0173950:intron 40.0%
TGTTATCTTTGTGCTTGGAC+TGG + chr1_4:59419945-59419964 Msa0173950:intron 40.0%
GGCTTAAACAAGATACAGCT+AGG - chr1_4:59420035-59420054 None:intergenic 40.0%
! ATCTTGTTTAAGCCATCCAG+TGG + chr1_4:59420041-59420060 Msa0173950:intron 40.0%
!! GAAATGTGTTTTCTAGCCAC+TGG - chr1_4:59420060-59420079 None:intergenic 40.0%
ACTTCTACAAGGCATGAAGA+AGG - chr1_4:59420328-59420347 None:intergenic 40.0%
CTTCATGCCTTGTAGAAGTA+AGG + chr1_4:59420329-59420348 Msa0173950:intron 40.0%
AACTAGCTGCAAGTTCCTAT+TGG + chr1_4:59420514-59420533 Msa0173950:intron 40.0%
ACTAGCTGCAAGTTCCTATT+GGG + chr1_4:59420515-59420534 Msa0173950:intron 40.0%
TTCCTTAGTGTGCATACATG+TGG - chr1_4:59420590-59420609 None:intergenic 40.0%
GCTTGACTAAAAGCTGAATG+GGG - chr1_4:59420730-59420749 None:intergenic 40.0%
GTGCTTGACTAAAAGCTGAA+TGG - chr1_4:59420732-59420751 None:intergenic 40.0%
GAGACTGTCAGCTGTAATAA+TGG - chr1_4:59420780-59420799 None:intergenic 40.0%
!! GAACGAAGGGAGTATTGATT+TGG - chr1_4:59421057-59421076 None:intergenic 40.0%
GGAGAGGAGGAAAATACAAA+GGG - chr1_4:59421553-59421572 None:intergenic 40.0%
TGGAGAGGAGGAAAATACAA+AGG - chr1_4:59421554-59421573 None:intergenic 40.0%
! TTGTATTTTCCTCCTCTCCA+TGG + chr1_4:59421554-59421573 Msa0173950:intron 40.0%
AAAATGGAGCCCTGAAAATC+AGG - chr1_4:59421674-59421693 None:intergenic 40.0%
!! TTATCATGCCAGTGTTGGTT+AGG + chr1_4:59421761-59421780 Msa0173950:three_prime_UTR 40.0%
TAAATCCACCTAACCAACAC+TGG - chr1_4:59421772-59421791 None:intergenic 40.0%
TTAATTCCTCACGGCTCTTA+TGG + chr1_4:59421807-59421826 Msa0173950:three_prime_UTR 40.0%
GAAATACTCCAACGTCTTGA+AGG - chr1_4:59421950-59421969 None:intergenic 40.0%
ATTTCATACGGACATCGTCG+CGG + chr1_4:59415804-59415823 Msa0173950:five_prime_UTR 45.0%
TGGAAGAGAGTGAAGTTGAG+GGG - chr1_4:59415983-59416002 None:intergenic 45.0%
GAGTCTGAAGAAGAAGCGAT+TGG - chr1_4:59416003-59416022 None:intergenic 45.0%
! CGCTTAGAAGAAGAAGTGTG+AGG - chr1_4:59416026-59416045 None:intergenic 45.0%
GGGAAAAACGCTTGAATCGA+TGG - chr1_4:59416061-59416080 None:intergenic 45.0%
ATCACAAGTGCTTTGGTGAG+TGG - chr1_4:59416470-59416489 None:intergenic 45.0%
GAAAGTAGGAAGCTGTGGTT+GGG - chr1_4:59416876-59416895 None:intergenic 45.0%
TGAAAGTAGGAAGCTGTGGT+TGG - chr1_4:59416877-59416896 None:intergenic 45.0%
TTCCGAATGCAGGGTTAAGA+TGG + chr1_4:59416913-59416932 Msa0173950:five_prime_UTR 45.0%
CTCCATCTTAACCCTGCATT+CGG - chr1_4:59416918-59416937 None:intergenic 45.0%
!! TTGGCTTGCTCGTAATATGC+AGG + chr1_4:59417428-59417447 Msa0173950:five_prime_UTR 45.0%
GAAAATCCATTGGCGATCTC+TGG + chr1_4:59417555-59417574 Msa0173950:CDS 45.0%
TTCCCAACAGGTAACTGACA+AGG + chr1_4:59417584-59417603 Msa0173950:intron 45.0%
TCCCAACAGGTAACTGACAA+GGG + chr1_4:59417585-59417604 Msa0173950:intron 45.0%
AACTACAGTAATGCTTGGGC+AGG - chr1_4:59417770-59417789 None:intergenic 45.0%
AGGTTAGCAAGAGAAGAGAG+TGG + chr1_4:59417910-59417929 Msa0173950:intron 45.0%
GGTGAATTCCTTCCTTACAC+TGG + chr1_4:59418135-59418154 Msa0173950:intron 45.0%
! TTACTCTGGGAACCAGTGTA+AGG - chr1_4:59418150-59418169 None:intergenic 45.0%
CATCTCCACCCAAAACCTTA+AGG - chr1_4:59418464-59418483 None:intergenic 45.0%
AGAAGTTGAAACAGTCCCTG+TGG - chr1_4:59418688-59418707 None:intergenic 45.0%
GTGCATTGAGGCAATTGGTT+TGG + chr1_4:59418752-59418771 Msa0173950:intron 45.0%
GAAAAGAGGGCTTAGGATCA+AGG - chr1_4:59418944-59418963 None:intergenic 45.0%
! TCTAACGGACAATCTAGGGA+TGG - chr1_4:59419055-59419074 None:intergenic 45.0%
GCTGGGATCTGCAATTAATG+AGG - chr1_4:59419520-59419539 None:intergenic 45.0%
ATTAATTGCAGATCCCAGCC+TGG + chr1_4:59419521-59419540 Msa0173950:intron 45.0%
!! TAGCATCGGGCTACGATTTT+GGG - chr1_4:59419623-59419642 None:intergenic 45.0%
!! ATAGCATCGGGCTACGATTT+TGG - chr1_4:59419624-59419643 None:intergenic 45.0%
!! TGTGTTTTCTAGCCACTGGA+TGG - chr1_4:59420056-59420075 None:intergenic 45.0%
TCTGATTTCTCATGTGGCAG+AGG + chr1_4:59420277-59420296 Msa0173950:intron 45.0%
GCTGTGCGATTCTATCCAAA+AGG + chr1_4:59420301-59420320 Msa0173950:CDS 45.0%
! AGGCATGAAGAAGGACCTTT+TGG - chr1_4:59420319-59420338 None:intergenic 45.0%
CACCACATGTATGCACACTA+AGG + chr1_4:59420585-59420604 Msa0173950:intron 45.0%
TAAAAGCTGAATGGGGACAG+GGG - chr1_4:59420723-59420742 None:intergenic 45.0%
CTAAAAGCTGAATGGGGACA+GGG - chr1_4:59420724-59420743 None:intergenic 45.0%
ACTAAAAGCTGAATGGGGAC+AGG - chr1_4:59420725-59420744 None:intergenic 45.0%
ACAGCTGACAGTCTCATATG+AGG + chr1_4:59420785-59420804 Msa0173950:intron 45.0%
!!! TCCTCAACTTTTAGCTCCAG+TGG + chr1_4:59420809-59420828 Msa0173950:CDS 45.0%
!!! ACTTTTAGCTCCAGTGGCAT+CGG + chr1_4:59420815-59420834 Msa0173950:CDS 45.0%
CAGATTATACCATGGAGAGG+AGG - chr1_4:59421566-59421585 None:intergenic 45.0%
CTGCAGATTATACCATGGAG+AGG - chr1_4:59421569-59421588 None:intergenic 45.0%
CTCTCCATGGTATAATCTGC+AGG + chr1_4:59421567-59421586 Msa0173950:intron 45.0%
AGTGCCTGCAGATTATACCA+TGG - chr1_4:59421574-59421593 None:intergenic 45.0%
GCACTGCAACCATTTCTTGA+AGG + chr1_4:59421589-59421608 Msa0173950:CDS 45.0%
TACGGTTATCATGCCAGTGT+TGG + chr1_4:59421756-59421775 Msa0173950:three_prime_UTR 45.0%
TGATTTCCATAAGAGCCGTG+AGG - chr1_4:59421816-59421835 None:intergenic 45.0%
CACGGCTCTTATGGAAATCA+TGG + chr1_4:59421816-59421835 Msa0173950:three_prime_UTR 45.0%
! GTATTTTCAGCAGTGCCACA+AGG - chr1_4:59421903-59421922 None:intergenic 45.0%
TAAGCTACCCTTCAAGACGT+TGG + chr1_4:59421939-59421958 Msa0173950:three_prime_UTR 45.0%
TGAGATGGTTTGACAAAGGC+AGG - chr1_4:59422031-59422050 None:intergenic 45.0%
TGCCTTTGTCAAACCATCTC+AGG + chr1_4:59422030-59422049 Msa0173950:three_prime_UTR 45.0%
GTCCTGAGATGGTTTGACAA+AGG - chr1_4:59422035-59422054 None:intergenic 45.0%
GGTATGGGCACATGACTTAT+AGG - chr1_4:59422067-59422086 None:intergenic 45.0%
! CAAGCGTTTTTCCCCTGTCA+TGG + chr1_4:59416067-59416086 Msa0173950:five_prime_UTR 50.0%
! GTTTTTCCCCTGTCATGGAG+TGG + chr1_4:59416072-59416091 Msa0173950:five_prime_UTR 50.0%
AATCCTGCCACTCCATGACA+GGG - chr1_4:59416082-59416101 None:intergenic 50.0%
CGAATGCAGGGTTAAGATGG+AGG + chr1_4:59416916-59416935 Msa0173950:five_prime_UTR 50.0%
TTCTGATCGTGAAGCCATCC+CGG + chr1_4:59416973-59416992 Msa0173950:five_prime_UTR 50.0%
GAGCAAGCACACCTTAACAG+TGG - chr1_4:59417017-59417036 None:intergenic 50.0%
ACAAACCTGACCTGTCGCAA+TGG + chr1_4:59417364-59417383 Msa0173950:five_prime_UTR 50.0%
ACTTCAAGGACCATTGCGAC+AGG - chr1_4:59417377-59417396 None:intergenic 50.0%
!! ATTTGGAGTGGGCTGCAAGA+AGG - chr1_4:59417533-59417552 None:intergenic 50.0%
ATCCATTGGCGATCTCTGGA+TGG + chr1_4:59417559-59417578 Msa0173950:CDS 50.0%
GCCCTTGTCAGTTACCTGTT+GGG - chr1_4:59417589-59417608 None:intergenic 50.0%
TGCCCTTGTCAGTTACCTGT+TGG - chr1_4:59417590-59417609 None:intergenic 50.0%
TCTGGGAACCAGTGTAAGGA+AGG - chr1_4:59418146-59418165 None:intergenic 50.0%
! TCTTGTGGTCCTGGAGCATT+TGG + chr1_4:59418497-59418516 Msa0173950:intron 50.0%
! CTTGTGGTCCTGGAGCATTT+GGG + chr1_4:59418498-59418517 Msa0173950:intron 50.0%
CATAATGTTGGGGAGTCCAG+GGG - chr1_4:59418543-59418562 None:intergenic 50.0%
GCATAATGTTGGGGAGTCCA+GGG - chr1_4:59418544-59418563 None:intergenic 50.0%
! GTAAAATGGGGGGTGCATTG+AGG + chr1_4:59418740-59418759 Msa0173950:intron 50.0%
!! TCTAGGGATGGAGCGTTGTT+AGG - chr1_4:59419043-59419062 None:intergenic 50.0%
TGGAGAACTGGAGAGAAGGT+TGG - chr1_4:59419373-59419392 None:intergenic 50.0%
!!! GACTTTTGGAGCTGGAGAAC+TGG - chr1_4:59419385-59419404 None:intergenic 50.0%
!! TTTTAGAGATGCGCCAGGCT+GGG - chr1_4:59419537-59419556 None:intergenic 50.0%
!! ATTTTAGAGATGCGCCAGGC+TGG - chr1_4:59419538-59419557 None:intergenic 50.0%
!! GCCTGGCGCATCTCTAAAAT+CGG + chr1_4:59419538-59419557 Msa0173950:intron 50.0%
!! TCCGATTTTAGAGATGCGCC+AGG - chr1_4:59419542-59419561 None:intergenic 50.0%
CGTAGCCCGATGCTATAGAT+CGG + chr1_4:59419628-59419647 Msa0173950:intron 50.0%
GTGCTCCGATCTATAGCATC+GGG - chr1_4:59419636-59419655 None:intergenic 50.0%
CGTGCTCCGATCTATAGCAT+CGG - chr1_4:59419637-59419656 None:intergenic 50.0%
AGGCAATTAGGTGGCCCAAT+AGG - chr1_4:59420532-59420551 None:intergenic 50.0%
GATAGGGACAGGCAATTAGG+TGG - chr1_4:59420541-59420560 None:intergenic 50.0%
CCTGATAGGGACAGGCAATT+AGG - chr1_4:59420544-59420563 None:intergenic 50.0%
CCTAATTGCCTGTCCCTATC+AGG + chr1_4:59420541-59420560 Msa0173950:intron 50.0%
! AGTCATGCACTGGCCTGATA+GGG - chr1_4:59420557-59420576 None:intergenic 50.0%
! TAGTCATGCACTGGCCTGAT+AGG - chr1_4:59420558-59420577 None:intergenic 50.0%
TATCAGGCCAGTGCATGACT+AGG + chr1_4:59420557-59420576 Msa0173950:intron 50.0%
GCCACTGGAGCTAAAAGTTG+AGG - chr1_4:59420813-59420832 None:intergenic 50.0%
! AGAGTACTTACCGATGCCAC+TGG - chr1_4:59420828-59420847 None:intergenic 50.0%
!! AGTGGCATCGGTAAGTACTC+TGG + chr1_4:59420827-59420846 Msa0173950:intron 50.0%
!! TCATGCCAGTGTTGGTTAGG+TGG + chr1_4:59421764-59421783 Msa0173950:three_prime_UTR 50.0%
TTCAGCAGTGCCACAAGGTT+GGG - chr1_4:59421898-59421917 None:intergenic 50.0%
TTTCAGCAGTGCCACAAGGT+TGG - chr1_4:59421899-59421918 None:intergenic 50.0%
GGAGCTTCTTAGTCCTGAGA+TGG - chr1_4:59422046-59422065 None:intergenic 50.0%
ATCCTGCCACTCCATGACAG+GGG - chr1_4:59416081-59416100 None:intergenic 55.0%
CAATCCTGCCACTCCATGAC+AGG - chr1_4:59416083-59416102 None:intergenic 55.0%
ATCGTGAAGCCATCCCGGAA+TGG + chr1_4:59416978-59416997 Msa0173950:five_prime_UTR 55.0%
!! AAAGGGCATCCATTCCGGGA+TGG - chr1_4:59416990-59417009 None:intergenic 55.0%
TGCGACAGGTCAGGTTTGTC+TGG - chr1_4:59417363-59417382 None:intergenic 55.0%
AAGGACCATTGCGACAGGTC+AGG - chr1_4:59417372-59417391 None:intergenic 55.0%
GACCATCCAGAGATCGCCAA+TGG - chr1_4:59417564-59417583 None:intergenic 55.0%
CTCTGGATGGTCTTCCCAAC+AGG + chr1_4:59417572-59417591 Msa0173950:CDS 55.0%
TGCAGCATCTCCCTCTCTTG+TGG + chr1_4:59418482-59418501 Msa0173950:intron 55.0%
ATCTCCCTCTCTTGTGGTCC+TGG + chr1_4:59418488-59418507 Msa0173950:intron 55.0%
TGCTCCAGGACCACAAGAGA+GGG - chr1_4:59418495-59418514 None:intergenic 55.0%
ATGCTCCAGGACCACAAGAG+AGG - chr1_4:59418496-59418515 None:intergenic 55.0%
ACAACAGGCCCAAATGCTCC+AGG - chr1_4:59418509-59418528 None:intergenic 55.0%
GGCATAATGTTGGGGAGTCC+AGG - chr1_4:59418545-59418564 None:intergenic 55.0%
GAGCTGGAGAACTGGAGAGA+AGG - chr1_4:59419377-59419396 None:intergenic 55.0%
CCAGCTGCACTCTAAGCCAA+GGG - chr1_4:59419432-59419451 None:intergenic 55.0%
CCTTGGCTTAGAGTGCAGCT+GGG + chr1_4:59419430-59419449 Msa0173950:intron 55.0%
TGTGCCACCTAGTCATGCAC+TGG - chr1_4:59420567-59420586 None:intergenic 55.0%
AACCCGGAATCCCAACCTTG+TGG + chr1_4:59421885-59421904 Msa0173950:three_prime_UTR 55.0%
TGCCACAAGGTTGGGATTCC+GGG - chr1_4:59421890-59421909 None:intergenic 55.0%
GTGCCACAAGGTTGGGATTC+CGG - chr1_4:59421891-59421910 None:intergenic 55.0%
CATACGGACATCGTCGCGGT+CGG + chr1_4:59415808-59415827 Msa0173950:five_prime_UTR 60.0%
TTCCCCTGTCATGGAGTGGC+AGG + chr1_4:59416076-59416095 Msa0173950:five_prime_UTR 60.0%
GGGGTCACGGGAGAAACAAC+AGG - chr1_4:59418524-59418543 None:intergenic 60.0%
!! GTTGTTTCTCCCGTGACCCC+TGG + chr1_4:59418524-59418543 Msa0173950:intron 60.0%
! GGGGGGTGCATTGAGGCAAT+TGG + chr1_4:59418747-59418766 Msa0173950:intron 60.0%
CCCTTGGCTTAGAGTGCAGC+TGG + chr1_4:59419429-59419448 Msa0173950:intron 60.0%
CCCAGCTGCACTCTAAGCCA+AGG - chr1_4:59419433-59419452 None:intergenic 60.0%
! TGCACTGGCCTGATAGGGAC+AGG - chr1_4:59420552-59420571 None:intergenic 60.0%
CAGGCCAGTGCATGACTAGG+TGG + chr1_4:59420560-59420579 Msa0173950:intron 60.0%
GGGGACAGGGGAGGAGAAAA+TGG - chr1_4:59420711-59420730 None:intergenic 60.0%
AAGCTGAATGGGGACAGGGG+AGG - chr1_4:59420720-59420739 None:intergenic 60.0%
TTGGGGAGTCCAGGGGTCAC+GGG - chr1_4:59418536-59418555 None:intergenic 65.0%
GTTGGGGAGTCCAGGGGTCA+CGG - chr1_4:59418537-59418556 None:intergenic 65.0%
CGTCGCGGTCGGAGAGCAGA+AGG + chr1_4:59415819-59415838 Msa0173950:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59415767 59422148 59415767 ID=Msa0173950;Name=Msa0173950
chr1_4 mRNA 59415767 59422148 59415767 ID=Msa0173950-mRNA-1;Parent=Msa0173950;Name=Msa0173950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=827|1|1|1|0.4|0.5|6|482|92
chr1_4 exon 59415767 59416105 59415767 ID=Msa0173950-mRNA-1:exon:18628;Parent=Msa0173950-mRNA-1
chr1_4 exon 59416673 59417024 59416673 ID=Msa0173950-mRNA-1:exon:18629;Parent=Msa0173950-mRNA-1
chr1_4 exon 59417354 59417593 59417354 ID=Msa0173950-mRNA-1:exon:18630;Parent=Msa0173950-mRNA-1
chr1_4 exon 59420297 59420345 59420297 ID=Msa0173950-mRNA-1:exon:18631;Parent=Msa0173950-mRNA-1
chr1_4 exon 59420789 59420836 59420789 ID=Msa0173950-mRNA-1:exon:18632;Parent=Msa0173950-mRNA-1
chr1_4 exon 59421589 59422148 59421589 ID=Msa0173950-mRNA-1:exon:18633;Parent=Msa0173950-mRNA-1
chr1_4 five_prime_UTR 59415767 59416105 59415767 ID=Msa0173950-mRNA-1:five_prime_utr;Parent=Msa0173950-mRNA-1
chr1_4 five_prime_UTR 59416673 59417024 59416673 ID=Msa0173950-mRNA-1:five_prime_utr;Parent=Msa0173950-mRNA-1
chr1_4 five_prime_UTR 59417354 59417489 59417354 ID=Msa0173950-mRNA-1:five_prime_utr;Parent=Msa0173950-mRNA-1
chr1_4 CDS 59417490 59417593 59417490 ID=Msa0173950-mRNA-1:cds;Parent=Msa0173950-mRNA-1
chr1_4 CDS 59420297 59420345 59420297 ID=Msa0173950-mRNA-1:cds;Parent=Msa0173950-mRNA-1
chr1_4 CDS 59420789 59420836 59420789 ID=Msa0173950-mRNA-1:cds;Parent=Msa0173950-mRNA-1
chr1_4 CDS 59421589 59421666 59421589 ID=Msa0173950-mRNA-1:cds;Parent=Msa0173950-mRNA-1
chr1_4 three_prime_UTR 59421667 59422148 59421667 ID=Msa0173950-mRNA-1:three_prime_utr;Parent=Msa0173950-mRNA-1
Gene Sequence

>Msa0173950

ATGCTCTTTACAATTAGTATTTTGTATTCATGTTTTATTGCCTTCTTGCAGCCCACTCCAAATCAGAAAATCCATTGGCGATCTCTGGATGGTCTTCCCAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCTTCATGCCTTGTAGAACTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAACCATTTCTTGAAGGTTTACTTAAACGTGGTTTGGAAAGATTTGCCACGTTTGCAAAAAGCTACAAATGA

Protein sequence

>Msa0173950

MLFTISILYSCFIAFLQPTPNQKIHWRSLDGLPNRGAVRFYPKGPSSCLVELTVSYEVPQLLAPVASALQPFLEGLLKRGLERFATFAKSYK*