Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032710 | sp|O80494|P2B15_ARATH | 45.583 | 283 | 138 | 9 | 11 | 282 | 3 | 280 | 9.59e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0032710 | -0.805948 | 1.043128e-49 | -8.615850e-47 |
| Msa0017300 | Msa0032710 | -0.809865 | 1.531522e-50 | -8.615850e-47 |
| Msa0032710 | Msa0033840 | -0.806527 | 7.878454e-50 | -8.615850e-47 |
| Msa0032710 | Msa0065670 | -0.811228 | 7.775499e-51 | -8.615850e-47 |
| Msa0032710 | Msa0081610 | -0.818785 | 1.635520e-52 | -8.615850e-47 |
| Msa0032710 | Msa0111110 | -0.808088 | 3.676798e-50 | -8.615850e-47 |
| Msa0032710 | Msa0138990 | -0.812373 | 4.380982e-51 | -8.615850e-47 |
| Msa0032710 | Msa0172830 | 0.862932 | 3.569890e-64 | -8.615850e-47 |
| Msa0032710 | Msa0173950 | -0.821501 | 3.904396e-53 | -8.615850e-47 |
| Msa0032710 | Msa0198990 | 0.802410 | 5.685829e-49 | -8.615850e-47 |
| Msa0032710 | Msa0241750 | 0.825116 | 5.585983e-54 | -8.615850e-47 |
| Msa0032710 | Msa0269170 | -0.802518 | 5.401561e-49 | -8.615850e-47 |
| Msa0032710 | Msa0293720 | 0.800036 | 1.740033e-48 | -8.615850e-47 |
| Msa0032710 | Msa0376430 | 0.823614 | 1.259628e-53 | -8.615850e-47 |
| Msa0032710 | Msa0389080 | -0.811670 | 6.234330e-51 | -8.615850e-47 |
| Msa0032710 | Msa0401860 | -0.804142 | 2.489824e-49 | -8.615850e-47 |
| Msa0032710 | Msa0405470 | -0.801031 | 1.090490e-48 | -8.615850e-47 |
| Msa0032710 | Msa0405550 | -0.800774 | 1.230879e-48 | -8.615850e-47 |
| Msa0032710 | Msa0483970 | -0.804333 | 2.271743e-49 | -8.615850e-47 |
| Msa0032710 | Msa0516250 | 0.809501 | 1.834207e-50 | -8.615850e-47 |
| Msa0032710 | Msa0590620 | -0.807364 | 5.239729e-50 | -8.615850e-47 |
| Msa0032710 | Msa0592330 | 0.822051 | 2.913218e-53 | -8.615850e-47 |
| Msa0032710 | Msa0632420 | 0.801419 | 9.085245e-49 | -8.615850e-47 |
| Msa0032710 | Msa0657710 | 0.821656 | 3.594633e-53 | -8.615850e-47 |
| Msa0032710 | Msa0657720 | 0.800790 | 1.221839e-48 | -8.615850e-47 |
| Msa0032710 | Msa0682160 | 0.809872 | 1.526279e-50 | -8.615850e-47 |
| Msa0032710 | Msa0693340 | -0.804051 | 2.600138e-49 | -8.615850e-47 |
| Msa0032710 | Msa0702790 | 0.807964 | 3.908774e-50 | -8.615850e-47 |
| Msa0032710 | Msa0702800 | 0.825248 | 5.199086e-54 | -8.615850e-47 |
| Msa0032710 | Msa0828950 | 0.808272 | 3.360808e-50 | -8.615850e-47 |
| Msa0032710 | Msa0828960 | 0.823421 | 1.397937e-53 | -8.615850e-47 |
| Msa0032710 | Msa0908470 | -0.801924 | 7.157590e-49 | -8.615850e-47 |
| Msa0032710 | Msa0940910 | 0.824676 | 7.092870e-54 | -8.615850e-47 |
| Msa0032710 | Msa0983610 | -0.801558 | 8.508442e-49 | -8.615850e-47 |
| Msa0032710 | Msa1086490 | -0.804821 | 1.796854e-49 | -8.615850e-47 |
| Msa0032710 | Msa1086760 | -0.804115 | 2.521961e-49 | -8.615850e-47 |
| Msa0032710 | Msa1087070 | -0.800709 | 1.269059e-48 | -8.615850e-47 |
| Msa0032710 | Msa1221630 | 0.827020 | 1.970120e-54 | -8.615850e-47 |
| Msa0032710 | Msa1221960 | 0.817231 | 3.670533e-52 | -8.615850e-47 |
| Msa0032710 | Msa1265020 | 0.825873 | 3.696124e-54 | -8.615850e-47 |
| Msa0032710 | Msa1273620 | -0.809309 | 2.016740e-50 | -8.615850e-47 |
| Msa0032710 | Msa1311600 | -0.809297 | 2.028612e-50 | -8.615850e-47 |
| Msa0032710 | Msa1323070 | 0.812036 | 5.188657e-51 | -8.615850e-47 |
| Msa0032710 | Msa1337850 | 0.824192 | 9.222828e-54 | -8.615850e-47 |
| Msa0032710 | Msa1348170 | -0.800909 | 1.155118e-48 | -8.615850e-47 |
| Msa0032710 | Msa1354520 | -0.801247 | 9.852819e-49 | -8.615850e-47 |
| Msa0032710 | Msa1354960 | -0.801026 | 1.093110e-48 | -8.615850e-47 |
| Msa0032710 | Msa1368260 | -0.802183 | 6.332339e-49 | -8.615850e-47 |
| Msa0032710 | Msa1385390 | -0.801956 | 7.050485e-49 | -8.615850e-47 |
| Msa0032710 | Msa1391140 | -0.803938 | 2.745260e-49 | -8.615850e-47 |
| Msa0032710 | Msa1439250 | 0.814200 | 1.738606e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032710 | MtrunA17_Chr1g0192371 | 94.681 | 282 | 14 | 1 | 1 | 282 | 1 | 281 | 0.0 | 555 |
| Msa0032710 | MtrunA17_Chr7g0272091 | 60.839 | 286 | 100 | 4 | 4 | 282 | 3 | 283 | 4.78e-126 | 360 |
| Msa0032710 | MtrunA17_Chr7g0272101 | 45.487 | 277 | 129 | 6 | 8 | 282 | 1 | 257 | 1.09e-76 | 234 |
| Msa0032710 | MtrunA17_Chr1g0189671 | 42.705 | 281 | 143 | 8 | 8 | 282 | 4 | 272 | 1.00e-69 | 216 |
| Msa0032710 | MtrunA17_Chr1g0189781 | 41.489 | 282 | 146 | 7 | 6 | 282 | 6 | 273 | 1.16e-68 | 214 |
| Msa0032710 | MtrunA17_Chr1g0189821 | 41.877 | 277 | 145 | 5 | 8 | 282 | 4 | 266 | 8.75e-66 | 206 |
| Msa0032710 | MtrunA17_Chr1g0189591 | 41.297 | 293 | 149 | 8 | 11 | 282 | 16 | 306 | 1.65e-64 | 204 |
| Msa0032710 | MtrunA17_Chr4g0010881 | 41.516 | 277 | 120 | 6 | 8 | 282 | 1 | 237 | 4.61e-64 | 201 |
| Msa0032710 | MtrunA17_Chr1g0203281 | 39.437 | 284 | 152 | 5 | 6 | 282 | 2 | 272 | 6.85e-64 | 202 |
| Msa0032710 | MtrunA17_Chr1g0189611 | 40.794 | 277 | 151 | 4 | 6 | 282 | 2 | 265 | 4.52e-63 | 199 |
| Msa0032710 | MtrunA17_Chr1g0189721 | 37.857 | 280 | 155 | 7 | 6 | 282 | 2 | 265 | 8.13e-62 | 196 |
| Msa0032710 | MtrunA17_Chr1g0189621 | 40.860 | 279 | 147 | 6 | 6 | 282 | 2 | 264 | 8.98e-62 | 196 |
| Msa0032710 | MtrunA17_Chr1g0190071 | 39.510 | 286 | 152 | 8 | 9 | 282 | 5 | 281 | 1.30e-58 | 188 |
| Msa0032710 | MtrunA17_Chr1g0189751 | 40.714 | 280 | 147 | 7 | 6 | 282 | 2 | 265 | 3.33e-58 | 188 |
| Msa0032710 | MtrunA17_Chr1g0189641 | 37.895 | 285 | 156 | 7 | 6 | 282 | 2 | 273 | 1.11e-55 | 181 |
| Msa0032710 | MtrunA17_Chr1g0203331 | 41.564 | 243 | 133 | 5 | 24 | 263 | 5 | 241 | 4.07e-55 | 178 |
| Msa0032710 | MtrunA17_Chr1g0157451 | 38.567 | 293 | 149 | 11 | 8 | 282 | 4 | 283 | 3.95e-54 | 177 |
| Msa0032710 | MtrunA17_Chr1g0189661 | 37.102 | 283 | 162 | 7 | 8 | 282 | 4 | 278 | 4.28e-49 | 164 |
| Msa0032710 | MtrunA17_Chr3g0097191 | 36.101 | 277 | 156 | 6 | 8 | 282 | 10 | 267 | 1.67e-48 | 162 |
| Msa0032710 | MtrunA17_Chr1g0189711 | 37.282 | 287 | 153 | 11 | 8 | 282 | 4 | 275 | 7.25e-47 | 158 |
| Msa0032710 | MtrunA17_Chr7g0260801 | 37.943 | 282 | 143 | 9 | 9 | 282 | 17 | 274 | 8.60e-47 | 158 |
| Msa0032710 | MtrunA17_Chr1g0189771 | 43.713 | 167 | 93 | 1 | 6 | 171 | 10 | 176 | 4.66e-45 | 150 |
| Msa0032710 | MtrunA17_Chr1g0189701 | 36.519 | 293 | 158 | 10 | 8 | 282 | 35 | 317 | 5.62e-44 | 152 |
| Msa0032710 | MtrunA17_Chr3g0078331 | 33.225 | 307 | 169 | 7 | 6 | 282 | 15 | 315 | 4.98e-42 | 146 |
| Msa0032710 | MtrunA17_Chr1g0189571 | 41.667 | 204 | 101 | 6 | 95 | 282 | 4 | 205 | 3.17e-40 | 139 |
| Msa0032710 | MtrunA17_Chr3g0095261 | 32.881 | 295 | 157 | 8 | 8 | 282 | 10 | 283 | 6.44e-39 | 137 |
| Msa0032710 | MtrunA17_Chr1g0189541 | 40.000 | 190 | 97 | 5 | 93 | 282 | 12 | 184 | 1.91e-33 | 120 |
| Msa0032710 | MtrunA17_Chr7g0265551 | 25.263 | 285 | 176 | 6 | 11 | 281 | 94 | 355 | 2.40e-24 | 100 |
| Msa0032710 | MtrunA17_Chr1g0189651 | 35.176 | 199 | 105 | 5 | 87 | 282 | 2 | 179 | 5.86e-24 | 95.5 |
| Msa0032710 | MtrunA17_Chr6g0472801 | 25.085 | 295 | 175 | 10 | 1 | 282 | 15 | 276 | 6.59e-24 | 98.2 |
| Msa0032710 | MtrunA17_Chr2g0317291 | 35.638 | 188 | 105 | 6 | 95 | 279 | 38 | 212 | 8.59e-24 | 96.3 |
| Msa0032710 | MtrunA17_Chr1g0203751 | 35.135 | 148 | 94 | 2 | 6 | 153 | 26 | 171 | 4.52e-22 | 93.2 |
| Msa0032710 | MtrunA17_Chr8g0350401 | 31.000 | 200 | 116 | 5 | 11 | 192 | 25 | 220 | 6.81e-22 | 92.8 |
| Msa0032710 | MtrunA17_Chr4g0057281 | 25.172 | 290 | 166 | 9 | 8 | 281 | 19 | 273 | 1.41e-19 | 86.3 |
| Msa0032710 | MtrunA17_Chr4g0043591 | 27.731 | 238 | 127 | 8 | 52 | 282 | 91 | 290 | 1.00e-16 | 78.6 |
| Msa0032710 | MtrunA17_Chr7g0260811 | 41.667 | 96 | 54 | 1 | 77 | 172 | 49 | 142 | 2.22e-15 | 72.4 |
| Msa0032710 | MtrunA17_Chr5g0397981 | 27.219 | 169 | 113 | 5 | 3 | 168 | 30 | 191 | 4.03e-15 | 73.9 |
| Msa0032710 | MtrunA17_Chr1g0188311 | 35.252 | 139 | 75 | 6 | 135 | 263 | 22 | 155 | 2.16e-14 | 69.3 |
| Msa0032710 | MtrunA17_Chr2g0300961 | 29.286 | 140 | 83 | 4 | 11 | 150 | 7 | 130 | 7.54e-13 | 64.3 |
| Msa0032710 | MtrunA17_Chr3g0143881 | 32.061 | 131 | 63 | 4 | 153 | 282 | 2 | 107 | 1.59e-11 | 60.1 |
| Msa0032710 | MtrunA17_Chr1g0189531 | 36.782 | 87 | 52 | 2 | 7 | 93 | 66 | 149 | 2.69e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032710 | AT1G09155.1 | 45.583 | 283 | 138 | 9 | 11 | 282 | 3 | 280 | 9.75e-76 | 233 |
| Msa0032710 | AT2G02240.1 | 40.433 | 277 | 145 | 4 | 6 | 281 | 59 | 316 | 1.17e-67 | 213 |
| Msa0032710 | AT1G56240.1 | 46.619 | 281 | 136 | 8 | 11 | 281 | 4 | 280 | 5.04e-67 | 210 |
| Msa0032710 | AT1G56250.1 | 45.390 | 282 | 140 | 8 | 11 | 282 | 4 | 281 | 1.92e-66 | 209 |
| Msa0032710 | AT2G02360.1 | 39.716 | 282 | 139 | 7 | 6 | 281 | 12 | 268 | 1.55e-63 | 201 |
| Msa0032710 | AT2G02230.1 | 36.334 | 311 | 159 | 6 | 5 | 282 | 29 | 333 | 4.53e-63 | 202 |
| Msa0032710 | AT2G02250.1 | 38.768 | 276 | 148 | 6 | 8 | 281 | 47 | 303 | 4.03e-61 | 196 |
| Msa0032710 | AT1G80110.1 | 38.652 | 282 | 138 | 6 | 8 | 281 | 1 | 255 | 9.88e-59 | 188 |
| Msa0032710 | AT2G02340.1 | 36.879 | 282 | 158 | 7 | 6 | 281 | 34 | 301 | 5.89e-55 | 180 |
| Msa0032710 | AT2G02320.1 | 35.714 | 280 | 155 | 7 | 7 | 281 | 39 | 298 | 5.60e-50 | 167 |
| Msa0032710 | AT2G02310.1 | 36.299 | 281 | 156 | 4 | 6 | 282 | 43 | 304 | 6.79e-50 | 167 |
| Msa0032710 | AT2G02350.2 | 36.014 | 286 | 154 | 7 | 3 | 281 | 19 | 282 | 2.86e-48 | 162 |
| Msa0032710 | AT2G02300.1 | 34.948 | 289 | 141 | 11 | 4 | 282 | 30 | 281 | 8.28e-47 | 158 |
| Msa0032710 | AT5G24560.1 | 40.659 | 182 | 95 | 2 | 7 | 188 | 2 | 170 | 5.29e-41 | 140 |
| Msa0032710 | AT3G53000.1 | 25.862 | 290 | 175 | 8 | 7 | 281 | 20 | 284 | 7.34e-26 | 103 |
| Msa0032710 | AT3G61060.1 | 25.260 | 289 | 163 | 8 | 11 | 282 | 28 | 280 | 1.75e-21 | 92.0 |
| Msa0032710 | AT5G52120.1 | 33.987 | 153 | 95 | 3 | 7 | 154 | 20 | 171 | 3.06e-21 | 91.3 |
| Msa0032710 | AT1G63090.1 | 34.756 | 164 | 98 | 3 | 7 | 168 | 25 | 181 | 9.23e-21 | 90.1 |
| Msa0032710 | AT3G61060.2 | 25.260 | 289 | 164 | 8 | 11 | 282 | 28 | 281 | 3.00e-20 | 88.6 |
| Msa0032710 | AT1G12710.1 | 30.488 | 164 | 105 | 4 | 7 | 168 | 27 | 183 | 1.75e-16 | 78.2 |
| Msa0032710 | AT4G19850.3 | 32.500 | 240 | 115 | 11 | 54 | 282 | 15 | 218 | 5.67e-16 | 75.5 |
| Msa0032710 | AT2G02350.1 | 32.298 | 161 | 87 | 5 | 127 | 281 | 21 | 165 | 3.02e-15 | 72.4 |
| Msa0032710 | AT4G19850.1 | 35.079 | 191 | 82 | 9 | 102 | 282 | 18 | 176 | 3.24e-15 | 72.4 |
| Msa0032710 | AT4G19840.1 | 26.923 | 234 | 133 | 8 | 53 | 282 | 46 | 245 | 6.76e-14 | 70.1 |
| Msa0032710 | AT1G65390.1 | 27.322 | 183 | 97 | 6 | 106 | 282 | 258 | 410 | 2.20e-12 | 67.0 |
| Msa0032710 | AT1G12710.2 | 28.667 | 150 | 100 | 3 | 7 | 154 | 27 | 171 | 4.22e-11 | 63.2 |
Find 82 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAATCCAATTGGTATTT+AGG | 0.105843 | 1_1:-59878856 | None:intergenic |
| AAGCAAGTTTACCTTGATTC+AGG | 0.264823 | 1_1:-59879499 | None:intergenic |
| TTAGGAAATGGCTCATCTTA+TGG | 0.282622 | 1_1:-59878838 | None:intergenic |
| ATAGTCAAACATATTTATTT+TGG | 0.292667 | 1_1:-59882025 | None:intergenic |
| CTTTAAATTGGACAAGTATT+CGG | 0.294296 | 1_1:+59879393 | Msa0032710:CDS |
| CAAATTGATAGAAGATAATA+AGG | 0.294509 | 1_1:+59881847 | Msa0032710:CDS |
| TGTTATGTAGAGCTTTAAAT+TGG | 0.303998 | 1_1:+59879381 | Msa0032710:intron |
| ATATTCGAGTTCCATCTAAA+AGG | 0.307761 | 1_1:+59881870 | Msa0032710:CDS |
| ATGGCCAACAAAGTGCAAAA+TGG | 0.309663 | 1_1:+59881752 | Msa0032710:CDS |
| TTTAAATTGGACAAGTATTC+GGG | 0.325991 | 1_1:+59879394 | Msa0032710:CDS |
| GGAGGTTAAGATTAGTGTTA+TGG | 0.327028 | 1_1:+59881949 | Msa0032710:CDS |
| GTGAGCTGGTTAGAGATTAA+AGG | 0.341543 | 1_1:+59881614 | Msa0032710:CDS |
| TCCAATTGGTATTTAGGAAA+TGG | 0.341753 | 1_1:-59878850 | None:intergenic |
| TTGGAGAGTGAGGGGATTGA+GGG | 0.352874 | 1_1:-59879101 | None:intergenic |
| TAGAGATTAAAGGCAAAATA+AGG | 0.357825 | 1_1:+59881624 | Msa0032710:CDS |
| ATTGGAGAGTGAGGGGATTG+AGG | 0.387212 | 1_1:-59879102 | None:intergenic |
| GCCATTTCCTAAATACCAAT+TGG | 0.396658 | 1_1:+59878849 | Msa0032710:five_prime_UTR |
| TGGGTGGATGGAAATTGAAT+TGG | 0.398175 | 1_1:+59881898 | Msa0032710:CDS |
| AAGATTAGTGTTATGGAGGT+TGG | 0.420611 | 1_1:+59881956 | Msa0032710:CDS |
| GTTTATATGAAGAACAAGAT+TGG | 0.427696 | 1_1:-59879120 | None:intergenic |
| TGGCCAACAAAGTGCAAAAT+GGG | 0.432183 | 1_1:+59881753 | Msa0032710:CDS |
| TACGATTCACAAAATCCAAT+TGG | 0.437643 | 1_1:-59878864 | None:intergenic |
| TGTCTAGGAGCAGAGGTTGT+TGG | 0.444959 | 1_1:-59879162 | None:intergenic |
| AACAACCTCTGCTCCTAGAC+AGG | 0.445484 | 1_1:+59879164 | Msa0032710:CDS |
| GCAAACCACATAGGCACATA+TGG | 0.446880 | 1_1:+59878895 | Msa0032710:exon |
| TTACTATGTGGCCCCTGTCT+AGG | 0.447226 | 1_1:-59879177 | None:intergenic |
| TTGACAATTCTCTTGCAGAT+AGG | 0.453970 | 1_1:-59879432 | None:intergenic |
| TAAACAACGTAAGTCGTGTT+TGG | 0.468253 | 1_1:-59881662 | None:intergenic |
| GGAGTAATGATCCATTGTAT+TGG | 0.470028 | 1_1:+59879461 | Msa0032710:CDS |
| AAGGGTGGTCTCATCGTTGA+AGG | 0.481480 | 1_1:+59881989 | Msa0032710:CDS |
| TATTCGAGTTCCATCTAAAA+GGG | 0.481762 | 1_1:+59881871 | Msa0032710:CDS |
| GGGTGGATGGAAATTGAATT+GGG | 0.484481 | 1_1:+59881899 | Msa0032710:CDS |
| GTTCCATCTAAAAGGGATGA+TGG | 0.488515 | 1_1:+59881878 | Msa0032710:CDS |
| GGAGGTTGGTTATAGACTGA+AGG | 0.490832 | 1_1:+59881970 | Msa0032710:CDS |
| TGATGCATGTAATTTCTCAA+TGG | 0.493376 | 1_1:+59878991 | Msa0032710:CDS |
| AGAAGTAAAACCAAAGGTAA+AGG | 0.499433 | 1_1:+59882051 | Msa0032710:three_prime_UTR |
| CAGCTAACTCTGACTCACTT+TGG | 0.504992 | 1_1:+59879035 | Msa0032710:CDS |
| ATGATCCATTGTATTGGAGC+TGG | 0.508075 | 1_1:+59879467 | Msa0032710:CDS |
| GGTTAAGATTAGTGTTATGG+AGG | 0.508835 | 1_1:+59881952 | Msa0032710:CDS |
| AGAACAAGATTGGAGAGTGA+GGG | 0.522398 | 1_1:-59879110 | None:intergenic |
| AAGAACAAGATTGGAGAGTG+AGG | 0.528278 | 1_1:-59879111 | None:intergenic |
| TTATGAAAAGCATAGAAAGA+TGG | 0.529657 | 1_1:+59881817 | Msa0032710:CDS |
| ATTGCAACTGATACCTCAGC+TGG | 0.529997 | 1_1:-59881731 | None:intergenic |
| CAGAATCAAGTCCGTACATA+CGG | 0.539261 | 1_1:-59881706 | None:intergenic |
| CAAGAGAATTGTCAATAACA+TGG | 0.547861 | 1_1:+59879440 | Msa0032710:CDS |
| AAGGTTTCACACCGTATGTA+CGG | 0.553117 | 1_1:+59881695 | Msa0032710:CDS |
| GGAGATCATCTCCTGAATCA+AGG | 0.554634 | 1_1:+59879488 | Msa0032710:CDS |
| GAACAAGATTGGAGAGTGAG+GGG | 0.559662 | 1_1:-59879109 | None:intergenic |
| TTCCATCTAAAAGGGATGAT+GGG | 0.560247 | 1_1:+59881879 | Msa0032710:CDS |
| AGCTGAGGTATCAGTTGCAA+TGG | 0.570422 | 1_1:+59881733 | Msa0032710:CDS |
| CTCCGGCAGAGTATCTATGT+TGG | 0.572603 | 1_1:-59878930 | None:intergenic |
| TAAAAGGGATGATGGGTGGA+TGG | 0.573430 | 1_1:+59881886 | Msa0032710:CDS |
| CAGATTCGCAGAGGTGGCTG+AGG | 0.573616 | 1_1:+59881583 | Msa0032710:intron |
| TGGCCCCTGTCTAGGAGCAG+AGG | 0.574396 | 1_1:-59879169 | None:intergenic |
| ATATAGGCAAATTCGATGGT+AGG | 0.587544 | 1_1:-59878797 | None:intergenic |
| AATTGCCATATGTGCCTATG+TGG | 0.587816 | 1_1:-59878900 | None:intergenic |
| CTCCAACATAGATACTCTGC+CGG | 0.588866 | 1_1:+59878928 | Msa0032710:CDS |
| GAGAAATTACATGCATCAAG+TGG | 0.592564 | 1_1:-59878986 | None:intergenic |
| GAGGTTGGTTATAGACTGAA+GGG | 0.594688 | 1_1:+59881971 | Msa0032710:CDS |
| GATCTCCAGCTCCAATACAA+TGG | 0.602031 | 1_1:-59879472 | None:intergenic |
| GAAAAGCATAGAAAGATGGA+AGG | 0.602899 | 1_1:+59881821 | Msa0032710:CDS |
| CTTGATATAGGCAAATTCGA+TGG | 0.604481 | 1_1:-59878801 | None:intergenic |
| CTGAGGTAAGAACAGTGAGC+TGG | 0.605200 | 1_1:+59881600 | Msa0032710:CDS |
| ACTTGATTCTGCGCCAGCTG+AGG | 0.612928 | 1_1:+59881718 | Msa0032710:CDS |
| ACAACCTCTGCTCCTAGACA+GGG | 0.614985 | 1_1:+59879165 | Msa0032710:CDS |
| ATACCGCAGATTCGCAGAGG+TGG | 0.620226 | 1_1:+59881577 | Msa0032710:intron |
| CGTTGTTTATCTCATCACAA+AGG | 0.620339 | 1_1:+59881676 | Msa0032710:CDS |
| CAACAAAGTGCAAAATGGGA+TGG | 0.622257 | 1_1:+59881757 | Msa0032710:CDS |
| AGCTGCTGAATGCAAAGTGG+AGG | 0.626588 | 1_1:-59879017 | None:intergenic |
| CATCTAAAAGGGATGATGGG+TGG | 0.630515 | 1_1:+59881882 | Msa0032710:CDS |
| ATGATGTCTTCATAGTCAGA+TGG | 0.630520 | 1_1:-59879070 | None:intergenic |
| TTTCTGTGGTGAAGTTGACA+TGG | 0.640269 | 1_1:+59881928 | Msa0032710:CDS |
| TATAGTAGAAGTAAAACCAA+AGG | 0.647785 | 1_1:+59882045 | Msa0032710:three_prime_UTR |
| GTTAGCTGCTGAATGCAAAG+TGG | 0.651230 | 1_1:-59879020 | None:intergenic |
| CAACATAGATACTCTGCCGG+AGG | 0.653807 | 1_1:+59878931 | Msa0032710:CDS |
| AATCTCGAAGCAAACCACAT+AGG | 0.654386 | 1_1:+59878886 | Msa0032710:five_prime_UTR |
| CTGTGGTGAAGTTGACATGG+AGG | 0.689911 | 1_1:+59881931 | Msa0032710:CDS |
| ATGATACCGCAGATTCGCAG+AGG | 0.694943 | 1_1:+59881574 | Msa0032710:intron |
| TTTGTACAATAAATACGAGG+AGG | 0.700943 | 1_1:+59881784 | Msa0032710:CDS |
| CAACCTCTGCTCCTAGACAG+GGG | 0.708819 | 1_1:+59879166 | Msa0032710:CDS |
| GTTGGTTATAGACTGAAGGG+TGG | 0.721602 | 1_1:+59881974 | Msa0032710:CDS |
| ATATTTGTACAATAAATACG+AGG | 0.779887 | 1_1:+59881781 | Msa0032710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAATATTTTTTT+AGG | + | chr1_1:59880702-59880721 | Msa0032710:intron | 0.0% |
| !!! | AATATTTTAATATTTTTTTA+GGG | + | chr1_1:59880703-59880722 | Msa0032710:intron | 0.0% |
| !!! | TAAAAGAATATTTTTACTTT+TGG | + | chr1_1:59880109-59880128 | Msa0032710:intron | 10.0% |
| !!! | AAAATTTTAAACTTTTTAGA+AGG | - | chr1_1:59880264-59880283 | None:intergenic | 10.0% |
| !! | TTTATTTATGTTAAAAATGT+TGG | + | chr1_1:59881375-59881394 | Msa0032710:intron | 10.0% |
| !! | TTGTTGTAATTGAAATTAAT+TGG | - | chr1_1:59879216-59879235 | None:intergenic | 15.0% |
| !! | GAATAATTGAATTAAACATT+TGG | - | chr1_1:59879565-59879584 | None:intergenic | 15.0% |
| !!! | ATTTGTGTTATTTTATTTGA+GGG | - | chr1_1:59879622-59879641 | None:intergenic | 15.0% |
| !!! | AATTTGTGTTATTTTATTTG+AGG | - | chr1_1:59879623-59879642 | None:intergenic | 15.0% |
| !! | AATTAAATATAAACGTGATA+AGG | - | chr1_1:59879835-59879854 | None:intergenic | 15.0% |
| !! | CAAATATAGAAATATAGTAT+TGG | + | chr1_1:59880189-59880208 | Msa0032710:intron | 15.0% |
| !!! | TTATGAATCCATTTTTTAAT+GGG | - | chr1_1:59880396-59880415 | None:intergenic | 15.0% |
| !!! | ATTATGAATCCATTTTTTAA+TGG | - | chr1_1:59880397-59880416 | None:intergenic | 15.0% |
| !!! | AACACTCTTTTTTTTTTTTT+TGG | - | chr1_1:59880487-59880506 | None:intergenic | 15.0% |
| !! | TTTAATTATCTTCAACAAAT+AGG | - | chr1_1:59880633-59880652 | None:intergenic | 15.0% |
| !!! | TTAAAAAGACATTTTTAATG+AGG | - | chr1_1:59881002-59881021 | None:intergenic | 15.0% |
| !!! | ATAGTCAAACATATTTATTT+TGG | - | chr1_1:59882028-59882047 | None:intergenic | 15.0% |
| !! | TTGTAATTGAAATTAATTGG+AGG | - | chr1_1:59879213-59879232 | None:intergenic | 20.0% |
| !! | TCTTAACATATGTCTTTAAA+AGG | - | chr1_1:59880165-59880184 | None:intergenic | 20.0% |
| !! | AACAAGTTAAGAATTCAAAA+AGG | - | chr1_1:59880320-59880339 | None:intergenic | 20.0% |
| !!! | CATAATTTTTATGTGAATCT+CGG | + | chr1_1:59880411-59880430 | Msa0032710:intron | 20.0% |
| !! | AAGTCTCATCATTTAAAAAT+GGG | - | chr1_1:59880451-59880470 | None:intergenic | 20.0% |
| !! | AAAGTCTCATCATTTAAAAA+TGG | - | chr1_1:59880452-59880471 | None:intergenic | 20.0% |
| !! | AATATTAAGATCATCTTCAA+TGG | + | chr1_1:59880848-59880867 | Msa0032710:intron | 20.0% |
| !!! | ATCTTTTCTCGAAAAATAAT+AGG | - | chr1_1:59880902-59880921 | None:intergenic | 20.0% |
| !!! | TAATTAAATTTTAGAGTGCT+CGG | + | chr1_1:59880921-59880940 | Msa0032710:intron | 20.0% |
| !! | TAGGATGGTATATTATTAAA+GGG | + | chr1_1:59881188-59881207 | Msa0032710:intron | 20.0% |
| !!! | TCAATACTCTTAACATTTTT+AGG | - | chr1_1:59881449-59881468 | None:intergenic | 20.0% |
| !! | ATATTTGTACAATAAATACG+AGG | + | chr1_1:59881781-59881800 | Msa0032710:CDS | 20.0% |
| !! | CAAATTGATAGAAGATAATA+AGG | + | chr1_1:59881847-59881866 | Msa0032710:CDS | 20.0% |
| ! | ACAAAATCCAATTGGTATTT+AGG | - | chr1_1:59878859-59878878 | None:intergenic | 25.0% |
| ! | GTTTATATGAAGAACAAGAT+TGG | - | chr1_1:59879123-59879142 | None:intergenic | 25.0% |
| ! | TAATTGAAATTAATTGGAGG+TGG | - | chr1_1:59879210-59879229 | None:intergenic | 25.0% |
| !! | ATGTAGTTTTTGCAAAATCA+CGG | + | chr1_1:59879296-59879315 | Msa0032710:intron | 25.0% |
| ! | ATCAATTGTTAGAATCAACA+CGG | - | chr1_1:59879338-59879357 | None:intergenic | 25.0% |
| !!! | TGTTATGTAGAGCTTTAAAT+TGG | + | chr1_1:59879381-59879400 | Msa0032710:intron | 25.0% |
| ! | CTTTAAATTGGACAAGTATT+CGG | + | chr1_1:59879393-59879412 | Msa0032710:CDS | 25.0% |
| ! | TTTAAATTGGACAAGTATTC+GGG | + | chr1_1:59879394-59879413 | Msa0032710:CDS | 25.0% |
| ! | TGAATTAAACATTTGGATTC+AGG | - | chr1_1:59879558-59879577 | None:intergenic | 25.0% |
| ! | AGGTATAGAACAAATCTTAT+CGG | - | chr1_1:59879793-59879812 | None:intergenic | 25.0% |
| ! | GTTATGGAAAAAGGAATATA+TGG | + | chr1_1:59880607-59880626 | Msa0032710:intron | 25.0% |
| ! | TTGGAATTCTACAATAAACA+TGG | + | chr1_1:59880948-59880967 | Msa0032710:intron | 25.0% |
| !! | ACATTTTTAATGAGGACAAA+TGG | - | chr1_1:59880994-59881013 | None:intergenic | 25.0% |
| ! | AACCTTCTTTCTAAATCTAA+TGG | - | chr1_1:59881133-59881152 | None:intergenic | 25.0% |
| !!! | TTTAGAAAGAAGGTTTTGAA+TGG | + | chr1_1:59881138-59881157 | Msa0032710:intron | 25.0% |
| ! | TAATAATATACCATCCTAGT+GGG | - | chr1_1:59881186-59881205 | None:intergenic | 25.0% |
| ! | TTAATAATATACCATCCTAG+TGG | - | chr1_1:59881187-59881206 | None:intergenic | 25.0% |
| ! | CTAGGATGGTATATTATTAA+AGG | + | chr1_1:59881187-59881206 | Msa0032710:intron | 25.0% |
| !!! | AAATGTTAAGAGTATTGAGT+CGG | + | chr1_1:59881451-59881470 | Msa0032710:intron | 25.0% |
| ! | GTAAGTTTATTAAAGACCAT+TGG | - | chr1_1:59881550-59881569 | None:intergenic | 25.0% |
| ! | TAGAGATTAAAGGCAAAATA+AGG | + | chr1_1:59881624-59881643 | Msa0032710:CDS | 25.0% |
| !! | TTATGAAAAGCATAGAAAGA+TGG | + | chr1_1:59881817-59881836 | Msa0032710:CDS | 25.0% |
| ! | TATAGTAGAAGTAAAACCAA+AGG | + | chr1_1:59882045-59882064 | Msa0032710:three_prime_UTR | 25.0% |
| ! | AAAAAAATTGCCTTTACCTT+TGG | - | chr1_1:59882064-59882083 | None:intergenic | 25.0% |
| ! | ATGTGTGTTTTGCTTGATAT+AGG | - | chr1_1:59878816-59878835 | None:intergenic | 30.0% |
| TCCAATTGGTATTTAGGAAA+TGG | - | chr1_1:59878853-59878872 | None:intergenic | 30.0% | |
| TACGATTCACAAAATCCAAT+TGG | - | chr1_1:59878867-59878886 | None:intergenic | 30.0% | |
| !!! | ATTTTTGAAACACAATCCTC+CGG | - | chr1_1:59878950-59878969 | None:intergenic | 30.0% |
| TGATGCATGTAATTTCTCAA+TGG | + | chr1_1:59878991-59879010 | Msa0032710:CDS | 30.0% | |
| CAAGAGAATTGTCAATAACA+TGG | + | chr1_1:59879440-59879459 | Msa0032710:CDS | 30.0% | |
| GCATGATAAGCTTAAACAAA+AGG | - | chr1_1:59879536-59879555 | None:intergenic | 30.0% | |
| ! | AATTTGTGTTATTAACGTGC+AGG | - | chr1_1:59879593-59879612 | None:intergenic | 30.0% |
| !!! | CCACGTTTTAATTAAGATGT+CGG | - | chr1_1:59879909-59879928 | None:intergenic | 30.0% |
| CGACATCTTAATTAAAACGT+GGG | + | chr1_1:59879907-59879926 | Msa0032710:intron | 30.0% | |
| !! | CTTTAAAGTCACAAGTTAGT+AGG | + | chr1_1:59880007-59880026 | Msa0032710:intron | 30.0% |
| !! | TTCTTAACTTGTTCTCCTAT+AGG | + | chr1_1:59880327-59880346 | Msa0032710:intron | 30.0% |
| !! | TCTTAACTTGTTCTCCTATA+GGG | + | chr1_1:59880328-59880347 | Msa0032710:intron | 30.0% |
| !!! | CCATTTTTTAATGGGTCATA+AGG | - | chr1_1:59880388-59880407 | None:intergenic | 30.0% |
| CCTTATGACCCATTAAAAAA+TGG | + | chr1_1:59880385-59880404 | Msa0032710:intron | 30.0% | |
| ATAACTAGTCAACTTACGTT+AGG | - | chr1_1:59880547-59880566 | None:intergenic | 30.0% | |
| ! | TAACGTAAGTTGACTAGTTA+TGG | + | chr1_1:59880546-59880565 | Msa0032710:intron | 30.0% |
| ! | AGTTGACTAGTTATGGAAAA+AGG | + | chr1_1:59880553-59880572 | Msa0032710:intron | 30.0% |
| ATAACTAGTCAACTTACGTT+AGG | - | chr1_1:59880547-59880566 | None:intergenic | 30.0% | |
| ! | TAACGTAAGTTGACTAGTTA+TGG | + | chr1_1:59880546-59880565 | Msa0032710:intron | 30.0% |
| ! | AGTTGACTAGTTATGGAAAA+AGG | + | chr1_1:59880553-59880572 | Msa0032710:intron | 30.0% |
| ! | TTTTAATGAGGACAAATGGT+GGG | - | chr1_1:59880990-59881009 | None:intergenic | 30.0% |
| ! | TTTTTAATGAGGACAAATGG+TGG | - | chr1_1:59880991-59881010 | None:intergenic | 30.0% |
| TTTAAACCATTTGTCCTCAA+TGG | + | chr1_1:59881017-59881036 | Msa0032710:intron | 30.0% | |
| TTCTTTCTAAATCTAATGGC+TGG | - | chr1_1:59881129-59881148 | None:intergenic | 30.0% | |
| AGCCATTAGATTTAGAAAGA+AGG | + | chr1_1:59881128-59881147 | Msa0032710:intron | 30.0% | |
| TTTGTACAATAAATACGAGG+AGG | + | chr1_1:59881784-59881803 | Msa0032710:CDS | 30.0% | |
| ! | ATATTCGAGTTCCATCTAAA+AGG | + | chr1_1:59881870-59881889 | Msa0032710:CDS | 30.0% |
| ! | TATTCGAGTTCCATCTAAAA+GGG | + | chr1_1:59881871-59881890 | Msa0032710:CDS | 30.0% |
| AGAAGTAAAACCAAAGGTAA+AGG | + | chr1_1:59882051-59882070 | Msa0032710:three_prime_UTR | 30.0% | |
| !!! | ATGGTAGGTGTCATTTTTGA+AGG | - | chr1_1:59878785-59878804 | None:intergenic | 35.0% |
| ATATAGGCAAATTCGATGGT+AGG | - | chr1_1:59878800-59878819 | None:intergenic | 35.0% | |
| CTTGATATAGGCAAATTCGA+TGG | - | chr1_1:59878804-59878823 | None:intergenic | 35.0% | |
| TTAGGAAATGGCTCATCTTA+TGG | - | chr1_1:59878841-59878860 | None:intergenic | 35.0% | |
| GCCATTTCCTAAATACCAAT+TGG | + | chr1_1:59878849-59878868 | Msa0032710:five_prime_UTR | 35.0% | |
| GAGAAATTACATGCATCAAG+TGG | - | chr1_1:59878989-59879008 | None:intergenic | 35.0% | |
| ATGATGTCTTCATAGTCAGA+TGG | - | chr1_1:59879073-59879092 | None:intergenic | 35.0% | |
| CAATGAGTTTGACAGAATCA+TGG | + | chr1_1:59879265-59879284 | Msa0032710:intron | 35.0% | |
| ! | TAGTTTTTGCAAAATCACGG+TGG | + | chr1_1:59879299-59879318 | Msa0032710:intron | 35.0% |
| TTGACAATTCTCTTGCAGAT+AGG | - | chr1_1:59879435-59879454 | None:intergenic | 35.0% | |
| GGAGTAATGATCCATTGTAT+TGG | + | chr1_1:59879461-59879480 | Msa0032710:CDS | 35.0% | |
| AAGCAAGTTTACCTTGATTC+AGG | - | chr1_1:59879502-59879521 | None:intergenic | 35.0% | |
| GATGATGTAAGCAAGATATG+TGG | - | chr1_1:59879743-59879762 | None:intergenic | 35.0% | |
| CCGACATCTTAATTAAAACG+TGG | + | chr1_1:59879906-59879925 | Msa0032710:intron | 35.0% | |
| CATCTTAATTAAAACGTGGG+AGG | + | chr1_1:59879910-59879929 | Msa0032710:intron | 35.0% | |
| TTAATTAAAACGTGGGAGGA+TGG | + | chr1_1:59879914-59879933 | Msa0032710:intron | 35.0% | |
| TAATTAAAACGTGGGAGGAT+GGG | + | chr1_1:59879915-59879934 | Msa0032710:intron | 35.0% | |
| !!! | TCGTTTTAGTCTTGAACTTG+TGG | + | chr1_1:59880362-59880381 | Msa0032710:intron | 35.0% |
| !!! | TTAAATTTTAGAGTGCTCGG+TGG | + | chr1_1:59880924-59880943 | Msa0032710:intron | 35.0% |
| TTTAATGAGGACAAATGGTG+GGG | - | chr1_1:59880989-59881008 | None:intergenic | 35.0% | |
| AAATTGTAGTCTCCTACTGT+AGG | - | chr1_1:59881075-59881094 | None:intergenic | 35.0% | |
| !!! | AAAGGGTGTTTTTGTCATGA+AGG | + | chr1_1:59881205-59881224 | Msa0032710:intron | 35.0% |
| !! | ATGGAAATGGTCGTCATTTT+TGG | - | chr1_1:59881520-59881539 | None:intergenic | 35.0% |
| TAAACAACGTAAGTCGTGTT+TGG | - | chr1_1:59881665-59881684 | None:intergenic | 35.0% | |
| CGTTGTTTATCTCATCACAA+AGG | + | chr1_1:59881676-59881695 | Msa0032710:CDS | 35.0% | |
| ! | GAAAAGCATAGAAAGATGGA+AGG | + | chr1_1:59881821-59881840 | Msa0032710:CDS | 35.0% |
| TTCCATCTAAAAGGGATGAT+GGG | + | chr1_1:59881879-59881898 | Msa0032710:CDS | 35.0% | |
| GGAGGTTAAGATTAGTGTTA+TGG | + | chr1_1:59881949-59881968 | Msa0032710:CDS | 35.0% | |
| GGTTAAGATTAGTGTTATGG+AGG | + | chr1_1:59881952-59881971 | Msa0032710:CDS | 35.0% | |
| AAGATTAGTGTTATGGAGGT+TGG | + | chr1_1:59881956-59881975 | Msa0032710:CDS | 35.0% | |
| AATCTCGAAGCAAACCACAT+AGG | + | chr1_1:59878886-59878905 | Msa0032710:five_prime_UTR | 40.0% | |
| AATTGCCATATGTGCCTATG+TGG | - | chr1_1:59878903-59878922 | None:intergenic | 40.0% | |
| AGAACAAGATTGGAGAGTGA+GGG | - | chr1_1:59879113-59879132 | None:intergenic | 40.0% | |
| AAGAACAAGATTGGAGAGTG+AGG | - | chr1_1:59879114-59879133 | None:intergenic | 40.0% | |
| ! | GGTGGATTCTACTTACTATG+TGG | - | chr1_1:59879192-59879211 | None:intergenic | 40.0% |
| ATGATCCATTGTATTGGAGC+TGG | + | chr1_1:59879467-59879486 | Msa0032710:CDS | 40.0% | |
| GACATGCATGCAAACAAAGT+AGG | - | chr1_1:59879813-59879832 | None:intergenic | 40.0% | |
| ! | CGAAATAACTTGTGCCCTAT+AGG | - | chr1_1:59880345-59880364 | None:intergenic | 40.0% |
| CTATGGTAGGCAACCTTAAT+GGG | + | chr1_1:59881046-59881065 | Msa0032710:intron | 40.0% | |
| ATGCTGGTGGTAACATTGTT+GGG | - | chr1_1:59881262-59881281 | None:intergenic | 40.0% | |
| ATCAATCGAAGAATCTCACG+AGG | - | chr1_1:59881324-59881343 | None:intergenic | 40.0% | |
| !! | TGTTAAGAGTATTGAGTCGG+AGG | + | chr1_1:59881454-59881473 | Msa0032710:intron | 40.0% |
| AATGACGACCATTTCCATTG+CGG | + | chr1_1:59881522-59881541 | Msa0032710:intron | 40.0% | |
| GTGAGCTGGTTAGAGATTAA+AGG | + | chr1_1:59881614-59881633 | Msa0032710:CDS | 40.0% | |
| AAGGTTTCACACCGTATGTA+CGG | + | chr1_1:59881695-59881714 | Msa0032710:CDS | 40.0% | |
| CAGAATCAAGTCCGTACATA+CGG | - | chr1_1:59881709-59881728 | None:intergenic | 40.0% | |
| ATGGCCAACAAAGTGCAAAA+TGG | + | chr1_1:59881752-59881771 | Msa0032710:CDS | 40.0% | |
| TGGCCAACAAAGTGCAAAAT+GGG | + | chr1_1:59881753-59881772 | Msa0032710:CDS | 40.0% | |
| ! | CATCCCATTTTGCACTTTGT+TGG | - | chr1_1:59881759-59881778 | None:intergenic | 40.0% |
| CAACAAAGTGCAAAATGGGA+TGG | + | chr1_1:59881757-59881776 | Msa0032710:CDS | 40.0% | |
| GTTCCATCTAAAAGGGATGA+TGG | + | chr1_1:59881878-59881897 | Msa0032710:CDS | 40.0% | |
| TGGGTGGATGGAAATTGAAT+TGG | + | chr1_1:59881898-59881917 | Msa0032710:CDS | 40.0% | |
| GGGTGGATGGAAATTGAATT+GGG | + | chr1_1:59881899-59881918 | Msa0032710:CDS | 40.0% | |
| ! | GAATTGGGTGAGTTTTTCTG+TGG | + | chr1_1:59881914-59881933 | Msa0032710:CDS | 40.0% |
| TTTCTGTGGTGAAGTTGACA+TGG | + | chr1_1:59881928-59881947 | Msa0032710:CDS | 40.0% | |
| ! | GAGGTTGGTTATAGACTGAA+GGG | + | chr1_1:59881971-59881990 | Msa0032710:CDS | 40.0% |
| GCAAACCACATAGGCACATA+TGG | + | chr1_1:59878895-59878914 | Msa0032710:exon | 45.0% | |
| CTCCAACATAGATACTCTGC+CGG | + | chr1_1:59878928-59878947 | Msa0032710:CDS | 45.0% | |
| GTTAGCTGCTGAATGCAAAG+TGG | - | chr1_1:59879023-59879042 | None:intergenic | 45.0% | |
| CAGCTAACTCTGACTCACTT+TGG | + | chr1_1:59879035-59879054 | Msa0032710:CDS | 45.0% | |
| GAACAAGATTGGAGAGTGAG+GGG | - | chr1_1:59879112-59879131 | None:intergenic | 45.0% | |
| GATCTCCAGCTCCAATACAA+TGG | - | chr1_1:59879475-59879494 | None:intergenic | 45.0% | |
| GGAGATCATCTCCTGAATCA+AGG | + | chr1_1:59879488-59879507 | Msa0032710:CDS | 45.0% | |
| !!! | TTTTAGAGTGCTCGGTGGAT+TGG | + | chr1_1:59880929-59880948 | Msa0032710:intron | 45.0% |
| GCTATGGTAGGCAACCTTAA+TGG | + | chr1_1:59881045-59881064 | Msa0032710:intron | 45.0% | |
| CTACTGTAGGAGACCCATTA+AGG | - | chr1_1:59881062-59881081 | None:intergenic | 45.0% | |
| ! | CTTAATGGGTCTCCTACAGT+AGG | + | chr1_1:59881060-59881079 | Msa0032710:intron | 45.0% |
| GTGGTAACATTGTTGGGGAA+GGG | - | chr1_1:59881256-59881275 | None:intergenic | 45.0% | |
| TGCTGGTGGTAACATTGTTG+GGG | - | chr1_1:59881261-59881280 | None:intergenic | 45.0% | |
| GATGCTGGTGGTAACATTGT+TGG | - | chr1_1:59881263-59881282 | None:intergenic | 45.0% | |
| AAGAATCTCACGAGGATGCT+GGG | - | chr1_1:59881316-59881335 | None:intergenic | 45.0% | |
| CATTGGATCCGCAATGGAAA+TGG | - | chr1_1:59881533-59881552 | None:intergenic | 45.0% | |
| CATTTCCATTGCGGATCCAA+TGG | + | chr1_1:59881531-59881550 | Msa0032710:intron | 45.0% | |
| AAAGACCATTGGATCCGCAA+TGG | - | chr1_1:59881539-59881558 | None:intergenic | 45.0% | |
| GCGAATCTGCGGTATCATTA+AGG | - | chr1_1:59881572-59881591 | None:intergenic | 45.0% | |
| ATTGCAACTGATACCTCAGC+TGG | - | chr1_1:59881734-59881753 | None:intergenic | 45.0% | |
| ! | AGCTGAGGTATCAGTTGCAA+TGG | + | chr1_1:59881733-59881752 | Msa0032710:CDS | 45.0% |
| ! | CACCCATCATCCCTTTTAGA+TGG | - | chr1_1:59881884-59881903 | None:intergenic | 45.0% |
| !! | CATCTAAAAGGGATGATGGG+TGG | + | chr1_1:59881882-59881901 | Msa0032710:CDS | 45.0% |
| !! | TAAAAGGGATGATGGGTGGA+TGG | + | chr1_1:59881886-59881905 | Msa0032710:CDS | 45.0% |
| ! | GGAGGTTGGTTATAGACTGA+AGG | + | chr1_1:59881970-59881989 | Msa0032710:CDS | 45.0% |
| GTTGGTTATAGACTGAAGGG+TGG | + | chr1_1:59881974-59881993 | Msa0032710:CDS | 45.0% | |
| ! | CTCCGGCAGAGTATCTATGT+TGG | - | chr1_1:59878933-59878952 | None:intergenic | 50.0% |
| CAACATAGATACTCTGCCGG+AGG | + | chr1_1:59878931-59878950 | Msa0032710:CDS | 50.0% | |
| AGCTGCTGAATGCAAAGTGG+AGG | - | chr1_1:59879020-59879039 | None:intergenic | 50.0% | |
| TTGGAGAGTGAGGGGATTGA+GGG | - | chr1_1:59879104-59879123 | None:intergenic | 50.0% | |
| ATTGGAGAGTGAGGGGATTG+AGG | - | chr1_1:59879105-59879124 | None:intergenic | 50.0% | |
| TGTCTAGGAGCAGAGGTTGT+TGG | - | chr1_1:59879165-59879184 | None:intergenic | 50.0% | |
| AACAACCTCTGCTCCTAGAC+AGG | + | chr1_1:59879164-59879183 | Msa0032710:CDS | 50.0% | |
| ACAACCTCTGCTCCTAGACA+GGG | + | chr1_1:59879165-59879184 | Msa0032710:CDS | 50.0% | |
| TTACTATGTGGCCCCTGTCT+AGG | - | chr1_1:59879180-59879199 | None:intergenic | 50.0% | |
| TAAAACGTGGGAGGATGGGA+TGG | + | chr1_1:59879919-59879938 | Msa0032710:intron | 50.0% | |
| AAAACGTGGGAGGATGGGAT+GGG | + | chr1_1:59879920-59879939 | Msa0032710:intron | 50.0% | |
| CCAACGCCATTGAGGACAAA+TGG | - | chr1_1:59881026-59881045 | None:intergenic | 50.0% | |
| CCATTTGTCCTCAATGGCGT+TGG | + | chr1_1:59881023-59881042 | Msa0032710:intron | 50.0% | |
| TACCATAGCCAACGCCATTG+AGG | - | chr1_1:59881034-59881053 | None:intergenic | 50.0% | |
| !! | TCAATGGCGTTGGCTATGGT+AGG | + | chr1_1:59881033-59881052 | Msa0032710:intron | 50.0% |
| TGTTTGCAGCATGACCCACT+AGG | + | chr1_1:59881169-59881188 | Msa0032710:intron | 50.0% | |
| CATTGTTGGGGAAGGGAACT+GGG | - | chr1_1:59881249-59881268 | None:intergenic | 50.0% | |
| ACATTGTTGGGGAAGGGAAC+TGG | - | chr1_1:59881250-59881269 | None:intergenic | 50.0% | |
| GGTGGTAACATTGTTGGGGA+AGG | - | chr1_1:59881257-59881276 | None:intergenic | 50.0% | |
| GGGAATGTATGCAGCTTGCA+AGG | - | chr1_1:59881296-59881315 | None:intergenic | 50.0% | |
| GAAGAATCTCACGAGGATGC+TGG | - | chr1_1:59881317-59881336 | None:intergenic | 50.0% | |
| ATGATACCGCAGATTCGCAG+AGG | + | chr1_1:59881574-59881593 | Msa0032710:intron | 50.0% | |
| CTGAGGTAAGAACAGTGAGC+TGG | + | chr1_1:59881600-59881619 | Msa0032710:CDS | 50.0% | |
| CTGTGGTGAAGTTGACATGG+AGG | + | chr1_1:59881931-59881950 | Msa0032710:CDS | 50.0% | |
| AAGGGTGGTCTCATCGTTGA+AGG | + | chr1_1:59881989-59882008 | Msa0032710:CDS | 50.0% | |
| CAACCTCTGCTCCTAGACAG+GGG | + | chr1_1:59879166-59879185 | Msa0032710:CDS | 55.0% | |
| !! | GTCCTCAATGGCGTTGGCTA+TGG | + | chr1_1:59881029-59881048 | Msa0032710:intron | 55.0% |
| TGCAGCATGACCCACTAGGA+TGG | + | chr1_1:59881173-59881192 | Msa0032710:intron | 55.0% | |
| CAAGGAACACACGAGGATGC+TGG | - | chr1_1:59881278-59881297 | None:intergenic | 55.0% | |
| CAGCTTGCAAGGAACACACG+AGG | - | chr1_1:59881285-59881304 | None:intergenic | 55.0% | |
| ATACCGCAGATTCGCAGAGG+TGG | + | chr1_1:59881577-59881596 | Msa0032710:intron | 55.0% | |
| ACTTGATTCTGCGCCAGCTG+AGG | + | chr1_1:59881718-59881737 | Msa0032710:CDS | 55.0% | |
| GGAACACACGAGGATGCTGG+TGG | - | chr1_1:59881275-59881294 | None:intergenic | 60.0% | |
| CAGCCACCTCTGCGAATCTG+CGG | - | chr1_1:59881583-59881602 | None:intergenic | 60.0% | |
| CAGATTCGCAGAGGTGGCTG+AGG | + | chr1_1:59881583-59881602 | Msa0032710:intron | 60.0% | |
| TGGCCCCTGTCTAGGAGCAG+AGG | - | chr1_1:59879172-59879191 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59878751 | 59882148 | 59878751 | ID=Msa0032710;Name=Msa0032710 |
| chr1_1 | mRNA | 59878751 | 59882148 | 59878751 | ID=Msa0032710-mRNA-1;Parent=Msa0032710;Name=Msa0032710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=163|1|1|1|1|1|3|115|282 |
| chr1_1 | exon | 59878751 | 59879195 | 59878751 | ID=Msa0032710-mRNA-1:exon:18565;Parent=Msa0032710-mRNA-1 |
| chr1_1 | exon | 59879391 | 59879509 | 59879391 | ID=Msa0032710-mRNA-1:exon:18566;Parent=Msa0032710-mRNA-1 |
| chr1_1 | exon | 59881586 | 59882148 | 59881586 | ID=Msa0032710-mRNA-1:exon:18567;Parent=Msa0032710-mRNA-1 |
| chr1_1 | five_prime_UTR | 59878751 | 59878913 | 59878751 | ID=Msa0032710-mRNA-1:five_prime_utr;Parent=Msa0032710-mRNA-1 |
| chr1_1 | CDS | 59878914 | 59879195 | 59878914 | ID=Msa0032710-mRNA-1:cds;Parent=Msa0032710-mRNA-1 |
| chr1_1 | CDS | 59879391 | 59879509 | 59879391 | ID=Msa0032710-mRNA-1:cds;Parent=Msa0032710-mRNA-1 |
| chr1_1 | CDS | 59881586 | 59882033 | 59881586 | ID=Msa0032710-mRNA-1:cds;Parent=Msa0032710-mRNA-1 |
| chr1_1 | three_prime_UTR | 59882034 | 59882148 | 59882034 | ID=Msa0032710-mRNA-1:three_prime_utr;Parent=Msa0032710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
