AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0969720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969720 MtrunA17_Chr6g0449231 94.798 346 17 1 3 348 16 360 0.0 677
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0969720 AT3G01640.2 71.387 346 98 1 4 349 33 377 0.0 528
Msa0969720 AT3G01640.1 71.387 346 98 1 4 349 17 361 0.0 526
Msa0969720 AT5G14470.1 69.253 348 105 2 3 349 16 362 2.10e-180 504

Find 112 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTCAATGTTTCAAAAT+TGG 0.111579 6_4:-1144707 Msa0969720:three_prime_UTR
TGATAATGGTACTATAATTT+TGG 0.120067 6_4:+1144634 None:intergenic
GAAAATTCCAACTCAATTAA+TGG 0.200200 6_4:+1144850 None:intergenic
CGGTATGAGGTGAGTTATTT+TGG 0.205195 6_4:-1148974 Msa0969720:five_prime_UTR
GATCGGGTGGCGCAAGTTTA+TGG 0.220839 6_4:-1146988 Msa0969720:CDS
ATCTTCAATGTTTCAAAATT+GGG 0.226774 6_4:-1144706 Msa0969720:three_prime_UTR
ATCATAGGAGAGAGTGAAAT+TGG 0.247472 6_4:+1148242 None:intergenic
GCAGCGAATCCTAGTGATTC+TGG 0.253457 6_4:-1146766 Msa0969720:CDS
GTGTTTCAGAGTGGACTTTC+GGG 0.255531 6_4:-1147147 Msa0969720:intron
GACTAGTACATTACATCTTC+AGG 0.269562 6_4:+1144916 None:intergenic
CTTAACGGTTGCAAAGAAAT+TGG 0.270327 6_4:+1148682 None:intergenic
ATAAATGCTGAAGGTTATTA+TGG 0.304600 6_4:-1148345 Msa0969720:CDS
TATGCAAGAGTTGGATTGTT+AGG 0.308744 6_4:-1148752 Msa0969720:CDS
AAAATTCCAACTCAATTAAT+GGG 0.326678 6_4:+1144851 None:intergenic
TGGGATGGATGTGCTTCTTC+TGG 0.327466 6_4:+1144870 None:intergenic
ACCTTCGCAGGTCAAAATTT+CGG 0.328226 6_4:+1146192 None:intergenic
TCCGTTTCATTTAAACGATA+AGG 0.331050 6_4:+1144949 None:intergenic
TGGAGGAGTTCGATTGCTTA+TGG 0.341365 6_4:-1148325 Msa0969720:CDS
TGGAAATCAAATTGGGTACT+TGG 0.346692 6_4:+1144654 None:intergenic
TTCTTGATTTCTACAAAGTT+AGG 0.363177 6_4:-1147089 Msa0969720:CDS
GTTCATGAGAGATGCAAGTT+TGG 0.363925 6_4:+1146214 None:intergenic
TGTGTTTCAGAGTGGACTTT+CGG 0.376289 6_4:-1147148 Msa0969720:intron
CTTTCTCTGCTGCAAGGATA+AGG 0.382614 6_4:+1147037 None:intergenic
ACGAGGGATGTTAGTATCAT+AGG 0.390246 6_4:+1148227 None:intergenic
AAAGAACTGGGAATAGTTGC+AGG 0.395186 6_4:-1147018 Msa0969720:CDS
TCCTTATCGTTTAAATGAAA+CGG 0.408438 6_4:-1144950 Msa0969720:CDS
AATCCAAGCGATGTTTATTA+CGG 0.415951 6_4:-1148728 Msa0969720:CDS
ATCCATCCCATTAATTGAGT+TGG 0.439867 6_4:-1144857 Msa0969720:three_prime_UTR
ATATTGTACAGGTCAATGTT+TGG 0.439879 6_4:-1145159 Msa0969720:intron
CATGTCAGCAGGGGTGGGAT+TGG 0.452472 6_4:+1149009 None:intergenic
GTTATGTTATGCAGGTTGAT+AGG 0.454420 6_4:-1148368 Msa0969720:intron
CTTCTCTTCTCATCATCAAC+TGG 0.454470 6_4:-1148603 Msa0969720:intron
GTACGGCAGAGGTGGCTTGA+TGG 0.458445 6_4:-1146320 Msa0969720:CDS
GAAATCAAGAAAGCAGTTCA+AGG 0.463436 6_4:+1147101 None:intergenic
GAGAAAGAGAAAGAGAAAAG+AGG 0.470273 6_4:-1148839 Msa0969720:five_prime_UTR
ACTAGTACATTACATCTTCA+GGG 0.471589 6_4:+1144917 None:intergenic
CCTTGCAGCAGAGAAAGAAC+TGG 0.472846 6_4:-1147031 Msa0969720:CDS
CAGCGAATCCTAGTGATTCT+GGG 0.475772 6_4:-1146765 Msa0969720:CDS
ATTGGAAGGAACGAGCTTAA+CGG 0.479671 6_4:+1148667 None:intergenic
TGATACTAACATCCCTCGTC+AGG 0.483235 6_4:-1148223 Msa0969720:intron
AATGGTAGAGGTTGCTAGGA+AGG 0.485870 6_4:-1145106 Msa0969720:CDS
TCATTTAAACGATAAGGAAA+AGG 0.488851 6_4:+1144955 None:intergenic
TTGCCGTAATAAACATCGCT+TGG 0.491017 6_4:+1148725 None:intergenic
GGAAATCAAATTGGGTACTT+GGG 0.491916 6_4:+1144655 None:intergenic
GGAGCCGCATCAAAATTTAC+AGG 0.492323 6_4:-1145081 Msa0969720:CDS
CACAAAGCATATGCAAGAGT+TGG 0.502332 6_4:-1148761 Msa0969720:CDS
TCTTCAATGTTTCAAAATTG+GGG 0.502571 6_4:-1144705 Msa0969720:three_prime_UTR
TCGTGACATGTCAGCAGGGG+TGG 0.503738 6_4:+1149003 None:intergenic
AGTGGACTTTCGGGTTCTAG+TGG 0.508326 6_4:-1147138 Msa0969720:CDS
CAAAGTTAGGCATCTAATCA+AGG 0.511075 6_4:-1147076 Msa0969720:CDS
TTCCAACTCAATTAATGGGA+TGG 0.514507 6_4:+1144855 None:intergenic
AGTTGCAGGTCTTCAAGATC+GGG 0.515184 6_4:-1147004 Msa0969720:CDS
GTGGACGGCTAAATTGATAA+TGG 0.520649 6_4:+1144620 None:intergenic
ATCTAATCAAGGTGGAGGTT+AGG 0.525850 6_4:-1147065 Msa0969720:CDS
GTAGAGGTTGCTAGGAAGGT+TGG 0.526618 6_4:-1145102 Msa0969720:CDS
ACTCATCGTGACATGTCAGC+AGG 0.535342 6_4:+1148998 None:intergenic
TAGTTGCAGGTCTTCAAGAT+CGG 0.535657 6_4:-1147005 Msa0969720:CDS
AAGGAAAACATGGATAAACT+AGG 0.536324 6_4:-1146847 Msa0969720:CDS
GCATCAAAATTTACAGGTAG+CGG 0.536936 6_4:-1145075 Msa0969720:CDS
TAGGATTCGCTGCATAGATA+AGG 0.537333 6_4:+1146776 None:intergenic
TTATATTTGTATCGTGCACA+TGG 0.544887 6_4:-1144735 Msa0969720:three_prime_UTR
TTTGCTTGAGAAGTCCCCTC+AGG 0.550365 6_4:+1145030 None:intergenic
CCAGTTCTTTCTCTGCTGCA+AGG 0.550986 6_4:+1147031 None:intergenic
AGGTTGAATGATGAGTTCAT+TGG 0.552268 6_4:+1148649 None:intergenic
TTTGTTTCCGTGTGAGAATG+AGG 0.554641 6_4:+1149115 None:intergenic
GCATGGAATTTATACACCAA+TGG 0.555262 6_4:-1146824 Msa0969720:CDS
GCTGCATAGATAAGGTATAG+AGG 0.555467 6_4:+1146784 None:intergenic
GAGGATGAATGTCATAAAGC+AGG 0.556500 6_4:-1145000 Msa0969720:CDS
TTCTCAAGCAAAGCTTCTTG+AGG 0.557200 6_4:-1145019 Msa0969720:CDS
AACATGGATAAACTAGGGCA+TGG 0.559912 6_4:-1146841 Msa0969720:CDS
CGATAAGGAAAAGGTTCAAG+AGG 0.561564 6_4:+1144964 None:intergenic
TTATGGTGGACTAGTTTACA+TGG 0.565357 6_4:-1146971 Msa0969720:intron
CGTGACATGTCAGCAGGGGT+GGG 0.566214 6_4:+1149004 None:intergenic
CTAACCTTCCCAGAATCACT+AGG 0.566815 6_4:+1146757 None:intergenic
AAAACAGCAATTACCTTCGC+AGG 0.567464 6_4:+1146180 None:intergenic
CTCATCGTGACATGTCAGCA+GGG 0.570769 6_4:+1148999 None:intergenic
GGGAGTAGACTCAAATCCAT+TGG 0.573580 6_4:+1146808 None:intergenic
GTGGACTTTCGGGTTCTAGT+GGG 0.575814 6_4:-1147137 Msa0969720:CDS
TGCAGGTTCATAGTAAAGTA+CGG 0.579586 6_4:-1146337 Msa0969720:intron
GTTGTTGCATATTGTCCTGA+GGG 0.579897 6_4:-1145045 Msa0969720:CDS
TCTGCTGCAAGGATAAGGTT+AGG 0.582026 6_4:+1147042 None:intergenic
CTGACATGTCACGATGAGTA+CGG 0.582698 6_4:-1148994 Msa0969720:five_prime_UTR
AGGAAAACATGGATAAACTA+GGG 0.585507 6_4:-1146846 Msa0969720:CDS
ATGTATTGCGAGAGAAGGAA+AGG 0.589757 6_4:-1146261 Msa0969720:CDS
AAGTTGACAAGATCATGAGT+AGG 0.590139 6_4:+1148623 None:intergenic
GTCACGATGAGTACGGTATG+AGG 0.591048 6_4:-1148987 Msa0969720:five_prime_UTR
ACAAGATCATGAGTAGGATG+AGG 0.597219 6_4:+1148629 None:intergenic
ATAGTAAAGTACGGCAGAGG+TGG 0.599440 6_4:-1146328 Msa0969720:CDS
CATAGATAAGGTATAGAGGT+GGG 0.601717 6_4:+1146788 None:intergenic
TGTTGTTGCATATTGTCCTG+AGG 0.601777 6_4:-1145046 Msa0969720:CDS
TAGGCATCTAATCAAGGTGG+AGG 0.602151 6_4:-1147070 Msa0969720:CDS
AATGCTGAAGGTTATTATGG+AGG 0.608746 6_4:-1148342 Msa0969720:CDS
CTTGCAGCAGAGAAAGAACT+GGG 0.609467 6_4:-1147030 Msa0969720:CDS
TTCATAGTAAAGTACGGCAG+AGG 0.610781 6_4:-1146331 Msa0969720:CDS
TGTGAAATCAATGCTTGAAG+TGG 0.615009 6_4:-1146285 Msa0969720:CDS
GTGGCATGTATTGCGAGAGA+AGG 0.618829 6_4:-1146266 Msa0969720:CDS
GAACTTCAACAAGGAAAACA+TGG 0.620661 6_4:-1146857 Msa0969720:CDS
TCAAAATTTACAGGTAGCGG+AGG 0.626651 6_4:-1145072 Msa0969720:CDS
TGCAGGTCTTCAAGATCGGG+TGG 0.627175 6_4:-1147001 Msa0969720:CDS
CGGGTGGCGCAAGTTTATGG+TGG 0.637422 6_4:-1146985 Msa0969720:CDS
GTTGATAGGATAAATGCTGA+AGG 0.640418 6_4:-1148354 Msa0969720:CDS
GCATAGATAAGGTATAGAGG+TGG 0.644266 6_4:+1146787 None:intergenic
GAATCCTAGTGATTCTGGGA+AGG 0.644944 6_4:-1146761 Msa0969720:intron
TGAATGATGAGTTCATTGGA+AGG 0.645465 6_4:+1148653 None:intergenic
AGATGGTTATATACCTGACG+AGG 0.645733 6_4:+1148210 None:intergenic
ATGTTTGGAGATGATGCACT+TGG 0.681123 6_4:-1145144 Msa0969720:CDS
TCATCGTGACATGTCAGCAG+GGG 0.684271 6_4:+1149000 None:intergenic
AGTTAGGCATCTAATCAAGG+TGG 0.684662 6_4:-1147073 Msa0969720:CDS
TTGTTGCATATTGTCCTGAG+GGG 0.685114 6_4:-1145044 Msa0969720:CDS
GTCGCCACCTCATTCTCACA+CGG 0.685145 6_4:-1149122 Msa0969720:five_prime_UTR
GTTTCCGTGTGAGAATGAGG+TGG 0.699837 6_4:+1149118 None:intergenic
GATGGTTATATACCTGACGA+GGG 0.721558 6_4:+1148211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATAAAAATAAAAGAAAA+CGG - chr6_4:1144840-1144859 Msa0969720:three_prime_UTR 10.0%
!!! ATAATTTGAAAATTTTGAAA+GGG - chr6_4:1148118-1148137 Msa0969720:intron 10.0%
!! CTAATAAAAATAAAAGAAAA+CGG - chr6_4:1144840-1144859 Msa0969720:three_prime_UTR 10.0%
!!! ATAATTTGAAAATTTTGAAA+GGG - chr6_4:1148118-1148137 Msa0969720:intron 10.0%
!!! ATAAAATTCAAAGATTGTTT+TGG + chr6_4:1145689-1145708 None:intergenic 15.0%
!! CATAATAATAGATAGATAAA+TGG + chr6_4:1145962-1145981 None:intergenic 15.0%
!! TATCAGTTATAAAAATCAAA+TGG + chr6_4:1147662-1147681 None:intergenic 15.0%
!!! TTCAAAATTTTCAAATTATC+CGG + chr6_4:1148117-1148136 None:intergenic 15.0%
!!! GATAATTTGAAAATTTTGAA+AGG - chr6_4:1148117-1148136 Msa0969720:intron 15.0%
!!! TTTGTATTAAACTTTGTTAT+TGG - chr6_4:1148592-1148611 Msa0969720:intron 15.0%
!! AATTTAAAAATGAAAACACA+TGG - chr6_4:1148989-1149008 Msa0969720:five_prime_UTR 15.0%
!! ATTTAAAAATGAAAACACAT+GGG - chr6_4:1148990-1149009 Msa0969720:five_prime_UTR 15.0%
!!! ATAATTTTGGAAATCAAATT+GGG + chr6_4:1149141-1149160 None:intergenic 15.0%
!!! TATAATTTTGGAAATCAAAT+TGG + chr6_4:1149142-1149161 None:intergenic 15.0%
!!! ATAAAATTCAAAGATTGTTT+TGG + chr6_4:1145689-1145708 None:intergenic 15.0%
!! CATAATAATAGATAGATAAA+TGG + chr6_4:1145962-1145981 None:intergenic 15.0%
!! TATCAGTTATAAAAATCAAA+TGG + chr6_4:1147662-1147681 None:intergenic 15.0%
!!! TTCAAAATTTTCAAATTATC+CGG + chr6_4:1148117-1148136 None:intergenic 15.0%
!!! GATAATTTGAAAATTTTGAA+AGG - chr6_4:1148117-1148136 Msa0969720:intron 15.0%
!!! TTTGTATTAAACTTTGTTAT+TGG - chr6_4:1148592-1148611 Msa0969720:intron 15.0%
!! AATTTAAAAATGAAAACACA+TGG - chr6_4:1148989-1149008 Msa0969720:five_prime_UTR 15.0%
!! ATTTAAAAATGAAAACACAT+GGG - chr6_4:1148990-1149009 Msa0969720:five_prime_UTR 15.0%
!!! ATAATTTTGGAAATCAAATT+GGG + chr6_4:1149141-1149160 None:intergenic 15.0%
!!! TATAATTTTGGAAATCAAAT+TGG + chr6_4:1149142-1149161 None:intergenic 15.0%
!! AAGAAAAAAAACAAGTGATT+GGG + chr6_4:1144709-1144728 None:intergenic 20.0%
!! AACAACATAAAAACTCTTAA+AGG + chr6_4:1145642-1145661 None:intergenic 20.0%
!! TTATAAAGTAGTAAGTCATA+TGG - chr6_4:1145826-1145845 Msa0969720:intron 20.0%
!!! TAAACAATCTAGTTTAGTTT+GGG + chr6_4:1146091-1146110 None:intergenic 20.0%
!!! TTAAACAATCTAGTTTAGTT+TGG + chr6_4:1146092-1146111 None:intergenic 20.0%
!!! TTATTTTAGAGAAAAGAATC+GGG + chr6_4:1147212-1147231 None:intergenic 20.0%
!!! CTTATTTTAGAGAAAAGAAT+CGG + chr6_4:1147213-1147232 None:intergenic 20.0%
!!! ATTCTTTTCTCTAAAATAAG+AGG - chr6_4:1147213-1147232 Msa0969720:intron 20.0%
!!! TTAATTTTAATTGATGATGC+AGG - chr6_4:1147431-1147450 Msa0969720:intron 20.0%
!! TATGTATATCTATATTGTAC+AGG - chr6_4:1148615-1148634 Msa0969720:CDS 20.0%
!! AAAATTCCAACTCAATTAAT+GGG + chr6_4:1148937-1148956 None:intergenic 20.0%
!!! GAGATTCATATGTTTTTTTA+TGG - chr6_4:1148963-1148982 Msa0969720:five_prime_UTR 20.0%
!! AATCTTCAATGTTTCAAAAT+TGG - chr6_4:1149078-1149097 Msa0969720:five_prime_UTR 20.0%
!! ATCTTCAATGTTTCAAAATT+GGG - chr6_4:1149079-1149098 Msa0969720:five_prime_UTR 20.0%
!!! TGATAATGGTACTATAATTT+TGG + chr6_4:1149154-1149173 None:intergenic 20.0%
!! AAGAAAAAAAACAAGTGATT+GGG + chr6_4:1144709-1144728 None:intergenic 20.0%
!! AACAACATAAAAACTCTTAA+AGG + chr6_4:1145642-1145661 None:intergenic 20.0%
!! TTATAAAGTAGTAAGTCATA+TGG - chr6_4:1145826-1145845 Msa0969720:intron 20.0%
!!! TAAACAATCTAGTTTAGTTT+GGG + chr6_4:1146091-1146110 None:intergenic 20.0%
!!! TTAAACAATCTAGTTTAGTT+TGG + chr6_4:1146092-1146111 None:intergenic 20.0%
!!! TTATTTTAGAGAAAAGAATC+GGG + chr6_4:1147212-1147231 None:intergenic 20.0%
!!! CTTATTTTAGAGAAAAGAAT+CGG + chr6_4:1147213-1147232 None:intergenic 20.0%
!!! ATTCTTTTCTCTAAAATAAG+AGG - chr6_4:1147213-1147232 Msa0969720:intron 20.0%
!!! TTAATTTTAATTGATGATGC+AGG - chr6_4:1147431-1147450 Msa0969720:intron 20.0%
!! TATGTATATCTATATTGTAC+AGG - chr6_4:1148615-1148634 Msa0969720:CDS 20.0%
!! AAAATTCCAACTCAATTAAT+GGG + chr6_4:1148937-1148956 None:intergenic 20.0%
!!! GAGATTCATATGTTTTTTTA+TGG - chr6_4:1148963-1148982 Msa0969720:five_prime_UTR 20.0%
!! AATCTTCAATGTTTCAAAAT+TGG - chr6_4:1149078-1149097 Msa0969720:five_prime_UTR 20.0%
!! ATCTTCAATGTTTCAAAATT+GGG - chr6_4:1149079-1149098 Msa0969720:five_prime_UTR 20.0%
!!! TGATAATGGTACTATAATTT+TGG + chr6_4:1149154-1149173 None:intergenic 20.0%
! GAAGAAAAAAAACAAGTGAT+TGG + chr6_4:1144710-1144729 None:intergenic 25.0%
!!! CTTGTTTTTTTTCTTCTTCA+AGG - chr6_4:1144714-1144733 Msa0969720:three_prime_UTR 25.0%
! ATGTAATCAATCACATGTAT+AGG + chr6_4:1145329-1145348 None:intergenic 25.0%
! CATTTAATTCAAATGATCAG+TGG - chr6_4:1145350-1145369 Msa0969720:intron 25.0%
! ATAAATGCTGAAGGTTATTA+TGG - chr6_4:1145440-1145459 Msa0969720:intron 25.0%
!! AACCATCTTGCTATAATTTA+TGG - chr6_4:1145590-1145609 Msa0969720:intron 25.0%
! ATCCATAAATTATAGCAAGA+TGG + chr6_4:1145595-1145614 None:intergenic 25.0%
! TTACATTCAACACAAGAAAA+AGG + chr6_4:1145938-1145957 None:intergenic 25.0%
!!! CAGTGTTTTAAAAATCAAAC+TGG - chr6_4:1146035-1146054 Msa0969720:intron 25.0%
!! TTTTTAATGTCTCTACAACA+TGG + chr6_4:1146314-1146333 None:intergenic 25.0%
! AAAAATCCTGACTCTAATTT+GGG + chr6_4:1146351-1146370 None:intergenic 25.0%
! AAAAAATCCTGACTCTAATT+TGG + chr6_4:1146352-1146371 None:intergenic 25.0%
!!! ATTAGAGTCAGGATTTTTTT+TGG - chr6_4:1146353-1146372 Msa0969720:intron 25.0%
! AAATAATGAATGAGTGAATC+CGG + chr6_4:1146536-1146555 None:intergenic 25.0%
! CAACAGATAGAAATATGAAA+AGG + chr6_4:1146579-1146598 None:intergenic 25.0%
! TTCTTGATTTCTACAAAGTT+AGG - chr6_4:1146696-1146715 Msa0969720:intron 25.0%
! TGTAATAGCACTATTGTAAA+AGG + chr6_4:1147110-1147129 None:intergenic 25.0%
!! AACACCATAAAGTGATATTT+TGG - chr6_4:1147343-1147362 Msa0969720:intron 25.0%
!! ACACCATAAAGTGATATTTT+GGG - chr6_4:1147344-1147363 Msa0969720:intron 25.0%
! TCTGTATCATTACATATAGT+TGG - chr6_4:1147629-1147648 Msa0969720:intron 25.0%
!! TGATGTTTAAGTTTCAAAGT+TGG + chr6_4:1147698-1147717 None:intergenic 25.0%
! ACATCAACTTACTTATTGAT+AGG - chr6_4:1147712-1147731 Msa0969720:intron 25.0%
! TGATCAATAAATTAGTACAC+TGG + chr6_4:1147843-1147862 None:intergenic 25.0%
! GTACTAATTTATTGATCAGT+AGG - chr6_4:1147845-1147864 Msa0969720:intron 25.0%
! CAAAGCATAATCATATATGA+TGG + chr6_4:1148220-1148239 None:intergenic 25.0%
!!! AGATGATAGCTCTTTTATTT+GGG + chr6_4:1148367-1148386 None:intergenic 25.0%
! TTCCCATTCATTTAATTAGT+TGG + chr6_4:1148557-1148576 None:intergenic 25.0%
! TCATTTAAACGATAAGGAAA+AGG + chr6_4:1148833-1148852 None:intergenic 25.0%
! TCCTTATCGTTTAAATGAAA+CGG - chr6_4:1148835-1148854 Msa0969720:five_prime_UTR 25.0%
! GAAAATTCCAACTCAATTAA+TGG + chr6_4:1148938-1148957 None:intergenic 25.0%
! TCTTCAATGTTTCAAAATTG+GGG - chr6_4:1149080-1149099 Msa0969720:five_prime_UTR 25.0%
! GAAGAAAAAAAACAAGTGAT+TGG + chr6_4:1144710-1144729 None:intergenic 25.0%
!!! CTTGTTTTTTTTCTTCTTCA+AGG - chr6_4:1144714-1144733 Msa0969720:three_prime_UTR 25.0%
! ATGTAATCAATCACATGTAT+AGG + chr6_4:1145329-1145348 None:intergenic 25.0%
! CATTTAATTCAAATGATCAG+TGG - chr6_4:1145350-1145369 Msa0969720:intron 25.0%
! ATAAATGCTGAAGGTTATTA+TGG - chr6_4:1145440-1145459 Msa0969720:intron 25.0%
!! AACCATCTTGCTATAATTTA+TGG - chr6_4:1145590-1145609 Msa0969720:intron 25.0%
! ATCCATAAATTATAGCAAGA+TGG + chr6_4:1145595-1145614 None:intergenic 25.0%
! TTACATTCAACACAAGAAAA+AGG + chr6_4:1145938-1145957 None:intergenic 25.0%
!!! CAGTGTTTTAAAAATCAAAC+TGG - chr6_4:1146035-1146054 Msa0969720:intron 25.0%
!! TTTTTAATGTCTCTACAACA+TGG + chr6_4:1146314-1146333 None:intergenic 25.0%
! AAAAATCCTGACTCTAATTT+GGG + chr6_4:1146351-1146370 None:intergenic 25.0%
! AAAAAATCCTGACTCTAATT+TGG + chr6_4:1146352-1146371 None:intergenic 25.0%
!!! ATTAGAGTCAGGATTTTTTT+TGG - chr6_4:1146353-1146372 Msa0969720:intron 25.0%
! AAATAATGAATGAGTGAATC+CGG + chr6_4:1146536-1146555 None:intergenic 25.0%
! CAACAGATAGAAATATGAAA+AGG + chr6_4:1146579-1146598 None:intergenic 25.0%
! TTCTTGATTTCTACAAAGTT+AGG - chr6_4:1146696-1146715 Msa0969720:intron 25.0%
! TGTAATAGCACTATTGTAAA+AGG + chr6_4:1147110-1147129 None:intergenic 25.0%
!! AACACCATAAAGTGATATTT+TGG - chr6_4:1147343-1147362 Msa0969720:intron 25.0%
!! ACACCATAAAGTGATATTTT+GGG - chr6_4:1147344-1147363 Msa0969720:intron 25.0%
! TCTGTATCATTACATATAGT+TGG - chr6_4:1147629-1147648 Msa0969720:intron 25.0%
!! TGATGTTTAAGTTTCAAAGT+TGG + chr6_4:1147698-1147717 None:intergenic 25.0%
! ACATCAACTTACTTATTGAT+AGG - chr6_4:1147712-1147731 Msa0969720:intron 25.0%
! TGATCAATAAATTAGTACAC+TGG + chr6_4:1147843-1147862 None:intergenic 25.0%
! GTACTAATTTATTGATCAGT+AGG - chr6_4:1147845-1147864 Msa0969720:intron 25.0%
! CAAAGCATAATCATATATGA+TGG + chr6_4:1148220-1148239 None:intergenic 25.0%
!!! AGATGATAGCTCTTTTATTT+GGG + chr6_4:1148367-1148386 None:intergenic 25.0%
! TTCCCATTCATTTAATTAGT+TGG + chr6_4:1148557-1148576 None:intergenic 25.0%
! TCATTTAAACGATAAGGAAA+AGG + chr6_4:1148833-1148852 None:intergenic 25.0%
! TCCTTATCGTTTAAATGAAA+CGG - chr6_4:1148835-1148854 Msa0969720:five_prime_UTR 25.0%
! GAAAATTCCAACTCAATTAA+TGG + chr6_4:1148938-1148957 None:intergenic 25.0%
! TCTTCAATGTTTCAAAATTG+GGG - chr6_4:1149080-1149099 Msa0969720:five_prime_UTR 25.0%
AATCCAAGCGATGTTTATTA+CGG - chr6_4:1145057-1145076 Msa0969720:CDS 30.0%
TTAATTCAAATGATCAGTGG+TGG - chr6_4:1145353-1145372 Msa0969720:intron 30.0%
ATCCTTGTTAATGTACTTGA+GGG - chr6_4:1145982-1146001 Msa0969720:intron 30.0%
! TTCTTTTGGCAATTTGATTG+TGG - chr6_4:1146142-1146161 Msa0969720:intron 30.0%
! CAGTTCGGTTTTTATAACAT+TGG - chr6_4:1146223-1146242 Msa0969720:CDS 30.0%
CATTAAAAACCTTTATGTCG+CGG - chr6_4:1146325-1146344 Msa0969720:CDS 30.0%
!!! TTTTTGGAACCTTTATGTCA+CGG - chr6_4:1146369-1146388 Msa0969720:intron 30.0%
GACCTTAAAAAGATGTAACA+TGG + chr6_4:1146395-1146414 None:intergenic 30.0%
AAACAAAAGAAAGACCGTAA+GGG + chr6_4:1146479-1146498 None:intergenic 30.0%
TAAACAAAAGAAAGACCGTA+AGG + chr6_4:1146480-1146499 None:intergenic 30.0%
! TTGAATTTTGTGTTTCAGAG+TGG - chr6_4:1146629-1146648 Msa0969720:intron 30.0%
AGTTGCATCACATGATTAAT+TGG + chr6_4:1146893-1146912 None:intergenic 30.0%
! GCTTTTATAGAACTTCAACA+AGG - chr6_4:1146919-1146938 Msa0969720:intron 30.0%
AAGGAAAACATGGATAAACT+AGG - chr6_4:1146938-1146957 Msa0969720:intron 30.0%
AGGAAAACATGGATAAACTA+GGG - chr6_4:1146939-1146958 Msa0969720:intron 30.0%
! GCACTATTGTAAAAGGTATA+AGG + chr6_4:1147103-1147122 None:intergenic 30.0%
TAGCCCAAAATATCACTTTA+TGG + chr6_4:1147350-1147369 None:intergenic 30.0%
TATCACTTCTAATAAGAGCA+CGG - chr6_4:1147368-1147387 Msa0969720:intron 30.0%
TCATTACATATAGTTGGACT+TGG - chr6_4:1147635-1147654 Msa0969720:intron 30.0%
TTAGGCTTAAGTCTATATGT+TGG + chr6_4:1147787-1147806 None:intergenic 30.0%
! TTAGTAGACTTGCTTAGATT+AGG + chr6_4:1147805-1147824 None:intergenic 30.0%
TGTGTATTCATGAATCATGT+TGG + chr6_4:1147954-1147973 None:intergenic 30.0%
TTAGAACATCGTATTCAACA+AGG - chr6_4:1148011-1148030 Msa0969720:intron 30.0%
TAGAACATCGTATTCAACAA+GGG - chr6_4:1148012-1148031 Msa0969720:intron 30.0%
CTGGCATCTAATATAAAACA+AGG - chr6_4:1148036-1148055 Msa0969720:intron 30.0%
!! AAAATTTTGAAAGGGACATG+AGG - chr6_4:1148126-1148145 Msa0969720:intron 30.0%
TATGCTTTGCAAAATCCTTA+AGG - chr6_4:1148231-1148250 Msa0969720:CDS 30.0%
ATTATGAAATGTGGTCCTTA+AGG + chr6_4:1148249-1148268 None:intergenic 30.0%
CTTGAGATGATTATGAAATG+TGG + chr6_4:1148258-1148277 None:intergenic 30.0%
TTCATAATCATCTCAAGCTA+AGG - chr6_4:1148261-1148280 Msa0969720:CDS 30.0%
AACTAATCTGGTAATTCTCA+AGG - chr6_4:1148289-1148308 Msa0969720:CDS 30.0%
! GAGATGATAGCTCTTTTATT+TGG + chr6_4:1148368-1148387 None:intergenic 30.0%
! GTAGGTTATGAGAGTATATT+AGG + chr6_4:1148392-1148411 None:intergenic 30.0%
!! ACCTACTTTAATTTTTCCCT+AGG - chr6_4:1148406-1148425 Msa0969720:intron 30.0%
ACCTAGGGAAAAATTAAAGT+AGG + chr6_4:1148410-1148429 None:intergenic 30.0%
GAAAAATACTGTGTAACCTA+GGG + chr6_4:1148425-1148444 None:intergenic 30.0%
AGAAAAATACTGTGTAACCT+AGG + chr6_4:1148426-1148445 None:intergenic 30.0%
ACGCCAACTAATTAAATGAA+TGG - chr6_4:1148551-1148570 Msa0969720:intron 30.0%
CGCCAACTAATTAAATGAAT+GGG - chr6_4:1148552-1148571 Msa0969720:intron 30.0%
ATATTGTACAGGTCAATGTT+TGG - chr6_4:1148626-1148645 Msa0969720:CDS 30.0%
! TGGTGATGTGAACATAAAAA+TGG - chr6_4:1148661-1148680 Msa0969720:CDS 30.0%
TGTGAACATAAAAATGGTAG+AGG - chr6_4:1148667-1148686 Msa0969720:CDS 30.0%
TCCGTTTCATTTAAACGATA+AGG + chr6_4:1148839-1148858 None:intergenic 30.0%
ACTAGTACATTACATCTTCA+GGG + chr6_4:1148871-1148890 None:intergenic 30.0%
TTATATTTGTATCGTGCACA+TGG - chr6_4:1149050-1149069 Msa0969720:five_prime_UTR 30.0%
AATCCAAGCGATGTTTATTA+CGG - chr6_4:1145057-1145076 Msa0969720:CDS 30.0%
TTAATTCAAATGATCAGTGG+TGG - chr6_4:1145353-1145372 Msa0969720:intron 30.0%
ATCCTTGTTAATGTACTTGA+GGG - chr6_4:1145982-1146001 Msa0969720:intron 30.0%
! TTCTTTTGGCAATTTGATTG+TGG - chr6_4:1146142-1146161 Msa0969720:intron 30.0%
! CAGTTCGGTTTTTATAACAT+TGG - chr6_4:1146223-1146242 Msa0969720:CDS 30.0%
CATTAAAAACCTTTATGTCG+CGG - chr6_4:1146325-1146344 Msa0969720:CDS 30.0%
!!! TTTTTGGAACCTTTATGTCA+CGG - chr6_4:1146369-1146388 Msa0969720:intron 30.0%
GACCTTAAAAAGATGTAACA+TGG + chr6_4:1146395-1146414 None:intergenic 30.0%
AAACAAAAGAAAGACCGTAA+GGG + chr6_4:1146479-1146498 None:intergenic 30.0%
TAAACAAAAGAAAGACCGTA+AGG + chr6_4:1146480-1146499 None:intergenic 30.0%
! TTGAATTTTGTGTTTCAGAG+TGG - chr6_4:1146629-1146648 Msa0969720:intron 30.0%
AGTTGCATCACATGATTAAT+TGG + chr6_4:1146893-1146912 None:intergenic 30.0%
! GCTTTTATAGAACTTCAACA+AGG - chr6_4:1146919-1146938 Msa0969720:intron 30.0%
AAGGAAAACATGGATAAACT+AGG - chr6_4:1146938-1146957 Msa0969720:intron 30.0%
AGGAAAACATGGATAAACTA+GGG - chr6_4:1146939-1146958 Msa0969720:intron 30.0%
! GCACTATTGTAAAAGGTATA+AGG + chr6_4:1147103-1147122 None:intergenic 30.0%
TAGCCCAAAATATCACTTTA+TGG + chr6_4:1147350-1147369 None:intergenic 30.0%
TATCACTTCTAATAAGAGCA+CGG - chr6_4:1147368-1147387 Msa0969720:intron 30.0%
TCATTACATATAGTTGGACT+TGG - chr6_4:1147635-1147654 Msa0969720:intron 30.0%
TTAGGCTTAAGTCTATATGT+TGG + chr6_4:1147787-1147806 None:intergenic 30.0%
! TTAGTAGACTTGCTTAGATT+AGG + chr6_4:1147805-1147824 None:intergenic 30.0%
TGTGTATTCATGAATCATGT+TGG + chr6_4:1147954-1147973 None:intergenic 30.0%
TTAGAACATCGTATTCAACA+AGG - chr6_4:1148011-1148030 Msa0969720:intron 30.0%
TAGAACATCGTATTCAACAA+GGG - chr6_4:1148012-1148031 Msa0969720:intron 30.0%
CTGGCATCTAATATAAAACA+AGG - chr6_4:1148036-1148055 Msa0969720:intron 30.0%
!! AAAATTTTGAAAGGGACATG+AGG - chr6_4:1148126-1148145 Msa0969720:intron 30.0%
TATGCTTTGCAAAATCCTTA+AGG - chr6_4:1148231-1148250 Msa0969720:CDS 30.0%
ATTATGAAATGTGGTCCTTA+AGG + chr6_4:1148249-1148268 None:intergenic 30.0%
CTTGAGATGATTATGAAATG+TGG + chr6_4:1148258-1148277 None:intergenic 30.0%
TTCATAATCATCTCAAGCTA+AGG - chr6_4:1148261-1148280 Msa0969720:CDS 30.0%
AACTAATCTGGTAATTCTCA+AGG - chr6_4:1148289-1148308 Msa0969720:CDS 30.0%
! GAGATGATAGCTCTTTTATT+TGG + chr6_4:1148368-1148387 None:intergenic 30.0%
! GTAGGTTATGAGAGTATATT+AGG + chr6_4:1148392-1148411 None:intergenic 30.0%
!! ACCTACTTTAATTTTTCCCT+AGG - chr6_4:1148406-1148425 Msa0969720:intron 30.0%
ACCTAGGGAAAAATTAAAGT+AGG + chr6_4:1148410-1148429 None:intergenic 30.0%
GAAAAATACTGTGTAACCTA+GGG + chr6_4:1148425-1148444 None:intergenic 30.0%
AGAAAAATACTGTGTAACCT+AGG + chr6_4:1148426-1148445 None:intergenic 30.0%
ACGCCAACTAATTAAATGAA+TGG - chr6_4:1148551-1148570 Msa0969720:intron 30.0%
CGCCAACTAATTAAATGAAT+GGG - chr6_4:1148552-1148571 Msa0969720:intron 30.0%
ATATTGTACAGGTCAATGTT+TGG - chr6_4:1148626-1148645 Msa0969720:CDS 30.0%
! TGGTGATGTGAACATAAAAA+TGG - chr6_4:1148661-1148680 Msa0969720:CDS 30.0%
TGTGAACATAAAAATGGTAG+AGG - chr6_4:1148667-1148686 Msa0969720:CDS 30.0%
TCCGTTTCATTTAAACGATA+AGG + chr6_4:1148839-1148858 None:intergenic 30.0%
ACTAGTACATTACATCTTCA+GGG + chr6_4:1148871-1148890 None:intergenic 30.0%
TTATATTTGTATCGTGCACA+TGG - chr6_4:1149050-1149069 Msa0969720:five_prime_UTR 30.0%
! CTCACACGGAAACAAATTTT+AGG - chr6_4:1144677-1144696 Msa0969720:three_prime_UTR 35.0%
GAGAAAGAGAAAGAGAAAAG+AGG - chr6_4:1144946-1144965 Msa0969720:CDS 35.0%
TATGCAAGAGTTGGATTGTT+AGG - chr6_4:1145033-1145052 Msa0969720:CDS 35.0%
CTTAACGGTTGCAAAGAAAT+TGG + chr6_4:1145106-1145125 None:intergenic 35.0%
TGAATGATGAGTTCATTGGA+AGG + chr6_4:1145135-1145154 None:intergenic 35.0%
AGGTTGAATGATGAGTTCAT+TGG + chr6_4:1145139-1145158 None:intergenic 35.0%
AAGTTGACAAGATCATGAGT+AGG + chr6_4:1145165-1145184 None:intergenic 35.0%
TTATGATCACGATCGAAAGA+AGG - chr6_4:1145251-1145270 Msa0969720:intron 35.0%
CATGTTGTGTTATGTTATGC+AGG - chr6_4:1145409-1145428 Msa0969720:intron 35.0%
!! GTTATGTTATGCAGGTTGAT+AGG - chr6_4:1145417-1145436 Msa0969720:intron 35.0%
! GTTGATAGGATAAATGCTGA+AGG - chr6_4:1145431-1145450 Msa0969720:intron 35.0%
AATGCTGAAGGTTATTATGG+AGG - chr6_4:1145443-1145462 Msa0969720:intron 35.0%
ATCATAGGAGAGAGTGAAAT+TGG + chr6_4:1145546-1145565 None:intergenic 35.0%
GATCCTTGTTAATGTACTTG+AGG - chr6_4:1145981-1146000 Msa0969720:intron 35.0%
TACCCTCAAGTACATTAACA+AGG + chr6_4:1145987-1146006 None:intergenic 35.0%
TCAAACTGGTGAGACATATA+GGG + chr6_4:1146199-1146218 None:intergenic 35.0%
ATCAAACTGGTGAGACATAT+AGG + chr6_4:1146200-1146219 None:intergenic 35.0%
CACCAGTTTGATTATCAGTT+CGG - chr6_4:1146208-1146227 Msa0969720:CDS 35.0%
AACCGAACTGATAATCAAAC+TGG + chr6_4:1146213-1146232 None:intergenic 35.0%
GTTGTGATCCTTGATATTGT+GGG - chr6_4:1146245-1146264 Msa0969720:CDS 35.0%
TACGATTTCCCACAATATCA+AGG + chr6_4:1146256-1146275 None:intergenic 35.0%
! GGCCATGTTACATCTTTTTA+AGG - chr6_4:1146390-1146409 Msa0969720:intron 35.0%
TTATTTAGCAAGTGCCCTTA+CGG - chr6_4:1146462-1146481 Msa0969720:intron 35.0%
!!! TTCTATCTGTTGTTTTGCTG+AGG - chr6_4:1146587-1146606 Msa0969720:intron 35.0%
! GTTTTGCTGAGGAAATAGTA+TGG - chr6_4:1146598-1146617 Msa0969720:intron 35.0%
GAAATCAAGAAAGCAGTTCA+AGG + chr6_4:1146687-1146706 None:intergenic 35.0%
CAAAGTTAGGCATCTAATCA+AGG - chr6_4:1146709-1146728 Msa0969720:intron 35.0%
!! TTATGGTGGACTAGTTTACA+TGG - chr6_4:1146814-1146833 Msa0969720:CDS 35.0%
GAACTTCAACAAGGAAAACA+TGG - chr6_4:1146928-1146947 Msa0969720:intron 35.0%
GCATGGAATTTATACACCAA+TGG - chr6_4:1146961-1146980 Msa0969720:intron 35.0%
CATAGATAAGGTATAGAGGT+GGG + chr6_4:1147000-1147019 None:intergenic 35.0%
AGAAACAGAACATGCAAGTT+AGG + chr6_4:1147138-1147157 None:intergenic 35.0%
! ATCACTTCTAATAAGAGCAC+GGG - chr6_4:1147369-1147388 Msa0969720:intron 35.0%
TGCAGGTTCATAGTAAAGTA+CGG - chr6_4:1147448-1147467 Msa0969720:intron 35.0%
TGTGAAATCAATGCTTGAAG+TGG - chr6_4:1147500-1147519 Msa0969720:intron 35.0%
!! GTAGTTTAGAGCTTTTAGTG+GGG + chr6_4:1147762-1147781 None:intergenic 35.0%
!! CGTAGTTTAGAGCTTTTAGT+GGG + chr6_4:1147763-1147782 None:intergenic 35.0%
!! TCGTAGTTTAGAGCTTTTAG+TGG + chr6_4:1147764-1147783 None:intergenic 35.0%
! ATGTTGGAACTTTTACCACT+GGG + chr6_4:1147938-1147957 None:intergenic 35.0%
!! TAAACTTTTAAGAGCCGACT+GGG + chr6_4:1147994-1148013 None:intergenic 35.0%
! GAGAATTACCAGATTAGTTG+TGG + chr6_4:1148288-1148307 None:intergenic 35.0%
! CACCTTTTGTCCAAACAAAT+AGG - chr6_4:1148318-1148337 Msa0969720:CDS 35.0%
TGCCTATTTGTTTGGACAAA+AGG + chr6_4:1148323-1148342 None:intergenic 35.0%
TGTCCAAACAAATAGGCAAA+TGG - chr6_4:1148325-1148344 Msa0969720:CDS 35.0%
!! TCTTTTATTTGGGTGTTAGG+TGG + chr6_4:1148357-1148376 None:intergenic 35.0%
!! AGCTCTTTTATTTGGGTGTT+AGG + chr6_4:1148360-1148379 None:intergenic 35.0%
TAAAAATGGTAGAGGTTGCT+AGG - chr6_4:1148675-1148694 Msa0969720:CDS 35.0%
!! GCTACCTGTAAATTTTGATG+CGG + chr6_4:1148711-1148730 None:intergenic 35.0%
GCATCAAAATTTACAGGTAG+CGG - chr6_4:1148710-1148729 Msa0969720:CDS 35.0%
GACTAGTACATTACATCTTC+AGG + chr6_4:1148872-1148891 None:intergenic 35.0%
ATCCATCCCATTAATTGAGT+TGG - chr6_4:1148928-1148947 Msa0969720:five_prime_UTR 35.0%
TTCCAACTCAATTAATGGGA+TGG + chr6_4:1148933-1148952 None:intergenic 35.0%
GGAAATCAAATTGGGTACTT+GGG + chr6_4:1149133-1149152 None:intergenic 35.0%
TGGAAATCAAATTGGGTACT+TGG + chr6_4:1149134-1149153 None:intergenic 35.0%
! CTCACACGGAAACAAATTTT+AGG - chr6_4:1144677-1144696 Msa0969720:three_prime_UTR 35.0%
GAGAAAGAGAAAGAGAAAAG+AGG - chr6_4:1144946-1144965 Msa0969720:CDS 35.0%
TATGCAAGAGTTGGATTGTT+AGG - chr6_4:1145033-1145052 Msa0969720:CDS 35.0%
CTTAACGGTTGCAAAGAAAT+TGG + chr6_4:1145106-1145125 None:intergenic 35.0%
TGAATGATGAGTTCATTGGA+AGG + chr6_4:1145135-1145154 None:intergenic 35.0%
AGGTTGAATGATGAGTTCAT+TGG + chr6_4:1145139-1145158 None:intergenic 35.0%
AAGTTGACAAGATCATGAGT+AGG + chr6_4:1145165-1145184 None:intergenic 35.0%
TTATGATCACGATCGAAAGA+AGG - chr6_4:1145251-1145270 Msa0969720:intron 35.0%
CATGTTGTGTTATGTTATGC+AGG - chr6_4:1145409-1145428 Msa0969720:intron 35.0%
!! GTTATGTTATGCAGGTTGAT+AGG - chr6_4:1145417-1145436 Msa0969720:intron 35.0%
! GTTGATAGGATAAATGCTGA+AGG - chr6_4:1145431-1145450 Msa0969720:intron 35.0%
AATGCTGAAGGTTATTATGG+AGG - chr6_4:1145443-1145462 Msa0969720:intron 35.0%
ATCATAGGAGAGAGTGAAAT+TGG + chr6_4:1145546-1145565 None:intergenic 35.0%
GATCCTTGTTAATGTACTTG+AGG - chr6_4:1145981-1146000 Msa0969720:intron 35.0%
TACCCTCAAGTACATTAACA+AGG + chr6_4:1145987-1146006 None:intergenic 35.0%
TCAAACTGGTGAGACATATA+GGG + chr6_4:1146199-1146218 None:intergenic 35.0%
ATCAAACTGGTGAGACATAT+AGG + chr6_4:1146200-1146219 None:intergenic 35.0%
CACCAGTTTGATTATCAGTT+CGG - chr6_4:1146208-1146227 Msa0969720:CDS 35.0%
AACCGAACTGATAATCAAAC+TGG + chr6_4:1146213-1146232 None:intergenic 35.0%
GTTGTGATCCTTGATATTGT+GGG - chr6_4:1146245-1146264 Msa0969720:CDS 35.0%
TACGATTTCCCACAATATCA+AGG + chr6_4:1146256-1146275 None:intergenic 35.0%
! GGCCATGTTACATCTTTTTA+AGG - chr6_4:1146390-1146409 Msa0969720:intron 35.0%
TTATTTAGCAAGTGCCCTTA+CGG - chr6_4:1146462-1146481 Msa0969720:intron 35.0%
!!! TTCTATCTGTTGTTTTGCTG+AGG - chr6_4:1146587-1146606 Msa0969720:intron 35.0%
! GTTTTGCTGAGGAAATAGTA+TGG - chr6_4:1146598-1146617 Msa0969720:intron 35.0%
GAAATCAAGAAAGCAGTTCA+AGG + chr6_4:1146687-1146706 None:intergenic 35.0%
CAAAGTTAGGCATCTAATCA+AGG - chr6_4:1146709-1146728 Msa0969720:intron 35.0%
!! TTATGGTGGACTAGTTTACA+TGG - chr6_4:1146814-1146833 Msa0969720:CDS 35.0%
GAACTTCAACAAGGAAAACA+TGG - chr6_4:1146928-1146947 Msa0969720:intron 35.0%
GCATGGAATTTATACACCAA+TGG - chr6_4:1146961-1146980 Msa0969720:intron 35.0%
CATAGATAAGGTATAGAGGT+GGG + chr6_4:1147000-1147019 None:intergenic 35.0%
AGAAACAGAACATGCAAGTT+AGG + chr6_4:1147138-1147157 None:intergenic 35.0%
! ATCACTTCTAATAAGAGCAC+GGG - chr6_4:1147369-1147388 Msa0969720:intron 35.0%
TGCAGGTTCATAGTAAAGTA+CGG - chr6_4:1147448-1147467 Msa0969720:intron 35.0%
TGTGAAATCAATGCTTGAAG+TGG - chr6_4:1147500-1147519 Msa0969720:intron 35.0%
!! GTAGTTTAGAGCTTTTAGTG+GGG + chr6_4:1147762-1147781 None:intergenic 35.0%
!! CGTAGTTTAGAGCTTTTAGT+GGG + chr6_4:1147763-1147782 None:intergenic 35.0%
!! TCGTAGTTTAGAGCTTTTAG+TGG + chr6_4:1147764-1147783 None:intergenic 35.0%
! ATGTTGGAACTTTTACCACT+GGG + chr6_4:1147938-1147957 None:intergenic 35.0%
!! TAAACTTTTAAGAGCCGACT+GGG + chr6_4:1147994-1148013 None:intergenic 35.0%
! GAGAATTACCAGATTAGTTG+TGG + chr6_4:1148288-1148307 None:intergenic 35.0%
! CACCTTTTGTCCAAACAAAT+AGG - chr6_4:1148318-1148337 Msa0969720:CDS 35.0%
TGCCTATTTGTTTGGACAAA+AGG + chr6_4:1148323-1148342 None:intergenic 35.0%
TGTCCAAACAAATAGGCAAA+TGG - chr6_4:1148325-1148344 Msa0969720:CDS 35.0%
!! TCTTTTATTTGGGTGTTAGG+TGG + chr6_4:1148357-1148376 None:intergenic 35.0%
!! AGCTCTTTTATTTGGGTGTT+AGG + chr6_4:1148360-1148379 None:intergenic 35.0%
TAAAAATGGTAGAGGTTGCT+AGG - chr6_4:1148675-1148694 Msa0969720:CDS 35.0%
!! GCTACCTGTAAATTTTGATG+CGG + chr6_4:1148711-1148730 None:intergenic 35.0%
GCATCAAAATTTACAGGTAG+CGG - chr6_4:1148710-1148729 Msa0969720:CDS 35.0%
GACTAGTACATTACATCTTC+AGG + chr6_4:1148872-1148891 None:intergenic 35.0%
ATCCATCCCATTAATTGAGT+TGG - chr6_4:1148928-1148947 Msa0969720:five_prime_UTR 35.0%
TTCCAACTCAATTAATGGGA+TGG + chr6_4:1148933-1148952 None:intergenic 35.0%
GGAAATCAAATTGGGTACTT+GGG + chr6_4:1149133-1149152 None:intergenic 35.0%
TGGAAATCAAATTGGGTACT+TGG + chr6_4:1149134-1149153 None:intergenic 35.0%
TTTGTTTCCGTGTGAGAATG+AGG + chr6_4:1144673-1144692 None:intergenic 40.0%
! CGGTATGAGGTGAGTTATTT+TGG - chr6_4:1144811-1144830 Msa0969720:three_prime_UTR 40.0%
!!! TGAGGTGAGTTATTTTGGTC+TGG - chr6_4:1144816-1144835 Msa0969720:three_prime_UTR 40.0%
CACAAAGCATATGCAAGAGT+TGG - chr6_4:1145024-1145043 Msa0969720:CDS 40.0%
TTGCCGTAATAAACATCGCT+TGG + chr6_4:1145063-1145082 None:intergenic 40.0%
ATTGGAAGGAACGAGCTTAA+CGG + chr6_4:1145121-1145140 None:intergenic 40.0%
ACAAGATCATGAGTAGGATG+AGG + chr6_4:1145159-1145178 None:intergenic 40.0%
CTTCTCTTCTCATCATCAAC+TGG - chr6_4:1145182-1145201 Msa0969720:intron 40.0%
! GATCGAAAGAAGGTGTATCT+GGG - chr6_4:1145261-1145280 Msa0969720:intron 40.0%
! ATCGAAAGAAGGTGTATCTG+GGG - chr6_4:1145262-1145281 Msa0969720:intron 40.0%
ACGAGGGATGTTAGTATCAT+AGG + chr6_4:1145561-1145580 None:intergenic 40.0%
GATGGTTATATACCTGACGA+GGG + chr6_4:1145577-1145596 None:intergenic 40.0%
AGATGGTTATATACCTGACG+AGG + chr6_4:1145578-1145597 None:intergenic 40.0%
!! GAGGGTATGATTTTAAGTCC+TGG - chr6_4:1146000-1146019 Msa0969720:intron 40.0%
ATCAAACTGGACAGTTCAAC+CGG - chr6_4:1146048-1146067 Msa0969720:intron 40.0%
!! GGCTTTAAAACACTGATGAC+CGG + chr6_4:1146070-1146089 None:intergenic 40.0%
AACCTTGAATCGTCCTGATT+CGG - chr6_4:1146119-1146138 Msa0969720:intron 40.0%
ATTGCCAAAAGAACCGAATC+AGG + chr6_4:1146135-1146154 None:intergenic 40.0%
! TGTGGTTTCGTCCTTGTTTA+AGG - chr6_4:1146160-1146179 Msa0969720:intron 40.0%
! GTGGTTTCGTCCTTGTTTAA+GGG - chr6_4:1146161-1146180 Msa0969720:intron 40.0%
TGGTTCAACTCCCTTAAACA+AGG + chr6_4:1146174-1146193 None:intergenic 40.0%
GGTTGTGATCCTTGATATTG+TGG - chr6_4:1146244-1146263 Msa0969720:CDS 40.0%
! TGTGTTTCAGAGTGGACTTT+CGG - chr6_4:1146637-1146656 Msa0969720:intron 40.0%
AGTTAGGCATCTAATCAAGG+TGG - chr6_4:1146712-1146731 Msa0969720:intron 40.0%
ATCTAATCAAGGTGGAGGTT+AGG - chr6_4:1146720-1146739 Msa0969720:intron 40.0%
AAAGAACTGGGAATAGTTGC+AGG - chr6_4:1146767-1146786 Msa0969720:CDS 40.0%
TAGTTGCAGGTCTTCAAGAT+CGG - chr6_4:1146780-1146799 Msa0969720:CDS 40.0%
AACATGGATAAACTAGGGCA+TGG - chr6_4:1146944-1146963 Msa0969720:intron 40.0%
GCATAGATAAGGTATAGAGG+TGG + chr6_4:1147001-1147020 None:intergenic 40.0%
GCTGCATAGATAAGGTATAG+AGG + chr6_4:1147004-1147023 None:intergenic 40.0%
TAGGATTCGCTGCATAGATA+AGG + chr6_4:1147012-1147031 None:intergenic 40.0%
ACGGGAAAGTTCGCTTAATT+TGG - chr6_4:1147387-1147406 Msa0969720:intron 40.0%
TTCATAGTAAAGTACGGCAG+AGG - chr6_4:1147454-1147473 Msa0969720:intron 40.0%
ATGTATTGCGAGAGAAGGAA+AGG - chr6_4:1147524-1147543 Msa0969720:intron 40.0%
GTTCATGAGAGATGCAAGTT+TGG + chr6_4:1147574-1147593 None:intergenic 40.0%
ACCTTCGCAGGTCAAAATTT+CGG + chr6_4:1147596-1147615 None:intergenic 40.0%
AAAACAGCAATTACCTTCGC+AGG + chr6_4:1147608-1147627 None:intergenic 40.0%
! TGTTGGAACTTTTACCACTG+GGG + chr6_4:1147937-1147956 None:intergenic 40.0%
! CATGTTGGAACTTTTACCAC+TGG + chr6_4:1147939-1147958 None:intergenic 40.0%
!! AAACTTTTAAGAGCCGACTG+GGG + chr6_4:1147993-1148012 None:intergenic 40.0%
!! CTAAACTTTTAAGAGCCGAC+TGG + chr6_4:1147995-1148014 None:intergenic 40.0%
GTAGTCACATAGAATCTCAG+AGG - chr6_4:1148148-1148167 Msa0969720:intron 40.0%
GGACCATTTGCCTATTTGTT+TGG + chr6_4:1148331-1148350 None:intergenic 40.0%
ATGTTTGGAGATGATGCACT+TGG - chr6_4:1148641-1148660 Msa0969720:CDS 40.0%
! TCAAAATTTACAGGTAGCGG+AGG - chr6_4:1148713-1148732 Msa0969720:CDS 40.0%
TGTTGTTGCATATTGTCCTG+AGG - chr6_4:1148739-1148758 Msa0969720:CDS 40.0%
GTTGTTGCATATTGTCCTGA+GGG - chr6_4:1148740-1148759 Msa0969720:CDS 40.0%
TTGTTGCATATTGTCCTGAG+GGG - chr6_4:1148741-1148760 Msa0969720:CDS 40.0%
TTCTCAAGCAAAGCTTCTTG+AGG - chr6_4:1148766-1148785 Msa0969720:CDS 40.0%
GAGGATGAATGTCATAAAGC+AGG - chr6_4:1148785-1148804 Msa0969720:exon 40.0%
CGATAAGGAAAAGGTTCAAG+AGG + chr6_4:1148824-1148843 None:intergenic 40.0%
TTTGTTTCCGTGTGAGAATG+AGG + chr6_4:1144673-1144692 None:intergenic 40.0%
! CGGTATGAGGTGAGTTATTT+TGG - chr6_4:1144811-1144830 Msa0969720:three_prime_UTR 40.0%
!!! TGAGGTGAGTTATTTTGGTC+TGG - chr6_4:1144816-1144835 Msa0969720:three_prime_UTR 40.0%
CACAAAGCATATGCAAGAGT+TGG - chr6_4:1145024-1145043 Msa0969720:CDS 40.0%
TTGCCGTAATAAACATCGCT+TGG + chr6_4:1145063-1145082 None:intergenic 40.0%
ATTGGAAGGAACGAGCTTAA+CGG + chr6_4:1145121-1145140 None:intergenic 40.0%
ACAAGATCATGAGTAGGATG+AGG + chr6_4:1145159-1145178 None:intergenic 40.0%
CTTCTCTTCTCATCATCAAC+TGG - chr6_4:1145182-1145201 Msa0969720:intron 40.0%
! GATCGAAAGAAGGTGTATCT+GGG - chr6_4:1145261-1145280 Msa0969720:intron 40.0%
! ATCGAAAGAAGGTGTATCTG+GGG - chr6_4:1145262-1145281 Msa0969720:intron 40.0%
ACGAGGGATGTTAGTATCAT+AGG + chr6_4:1145561-1145580 None:intergenic 40.0%
GATGGTTATATACCTGACGA+GGG + chr6_4:1145577-1145596 None:intergenic 40.0%
AGATGGTTATATACCTGACG+AGG + chr6_4:1145578-1145597 None:intergenic 40.0%
!! GAGGGTATGATTTTAAGTCC+TGG - chr6_4:1146000-1146019 Msa0969720:intron 40.0%
ATCAAACTGGACAGTTCAAC+CGG - chr6_4:1146048-1146067 Msa0969720:intron 40.0%
!! GGCTTTAAAACACTGATGAC+CGG + chr6_4:1146070-1146089 None:intergenic 40.0%
AACCTTGAATCGTCCTGATT+CGG - chr6_4:1146119-1146138 Msa0969720:intron 40.0%
ATTGCCAAAAGAACCGAATC+AGG + chr6_4:1146135-1146154 None:intergenic 40.0%
! TGTGGTTTCGTCCTTGTTTA+AGG - chr6_4:1146160-1146179 Msa0969720:intron 40.0%
! GTGGTTTCGTCCTTGTTTAA+GGG - chr6_4:1146161-1146180 Msa0969720:intron 40.0%
TGGTTCAACTCCCTTAAACA+AGG + chr6_4:1146174-1146193 None:intergenic 40.0%
GGTTGTGATCCTTGATATTG+TGG - chr6_4:1146244-1146263 Msa0969720:CDS 40.0%
! TGTGTTTCAGAGTGGACTTT+CGG - chr6_4:1146637-1146656 Msa0969720:intron 40.0%
AGTTAGGCATCTAATCAAGG+TGG - chr6_4:1146712-1146731 Msa0969720:intron 40.0%
ATCTAATCAAGGTGGAGGTT+AGG - chr6_4:1146720-1146739 Msa0969720:intron 40.0%
AAAGAACTGGGAATAGTTGC+AGG - chr6_4:1146767-1146786 Msa0969720:CDS 40.0%
TAGTTGCAGGTCTTCAAGAT+CGG - chr6_4:1146780-1146799 Msa0969720:CDS 40.0%
AACATGGATAAACTAGGGCA+TGG - chr6_4:1146944-1146963 Msa0969720:intron 40.0%
GCATAGATAAGGTATAGAGG+TGG + chr6_4:1147001-1147020 None:intergenic 40.0%
GCTGCATAGATAAGGTATAG+AGG + chr6_4:1147004-1147023 None:intergenic 40.0%
TAGGATTCGCTGCATAGATA+AGG + chr6_4:1147012-1147031 None:intergenic 40.0%
ACGGGAAAGTTCGCTTAATT+TGG - chr6_4:1147387-1147406 Msa0969720:intron 40.0%
TTCATAGTAAAGTACGGCAG+AGG - chr6_4:1147454-1147473 Msa0969720:intron 40.0%
ATGTATTGCGAGAGAAGGAA+AGG - chr6_4:1147524-1147543 Msa0969720:intron 40.0%
GTTCATGAGAGATGCAAGTT+TGG + chr6_4:1147574-1147593 None:intergenic 40.0%
ACCTTCGCAGGTCAAAATTT+CGG + chr6_4:1147596-1147615 None:intergenic 40.0%
AAAACAGCAATTACCTTCGC+AGG + chr6_4:1147608-1147627 None:intergenic 40.0%
! TGTTGGAACTTTTACCACTG+GGG + chr6_4:1147937-1147956 None:intergenic 40.0%
! CATGTTGGAACTTTTACCAC+TGG + chr6_4:1147939-1147958 None:intergenic 40.0%
!! AAACTTTTAAGAGCCGACTG+GGG + chr6_4:1147993-1148012 None:intergenic 40.0%
!! CTAAACTTTTAAGAGCCGAC+TGG + chr6_4:1147995-1148014 None:intergenic 40.0%
GTAGTCACATAGAATCTCAG+AGG - chr6_4:1148148-1148167 Msa0969720:intron 40.0%
GGACCATTTGCCTATTTGTT+TGG + chr6_4:1148331-1148350 None:intergenic 40.0%
ATGTTTGGAGATGATGCACT+TGG - chr6_4:1148641-1148660 Msa0969720:CDS 40.0%
! TCAAAATTTACAGGTAGCGG+AGG - chr6_4:1148713-1148732 Msa0969720:CDS 40.0%
TGTTGTTGCATATTGTCCTG+AGG - chr6_4:1148739-1148758 Msa0969720:CDS 40.0%
GTTGTTGCATATTGTCCTGA+GGG - chr6_4:1148740-1148759 Msa0969720:CDS 40.0%
TTGTTGCATATTGTCCTGAG+GGG - chr6_4:1148741-1148760 Msa0969720:CDS 40.0%
TTCTCAAGCAAAGCTTCTTG+AGG - chr6_4:1148766-1148785 Msa0969720:CDS 40.0%
GAGGATGAATGTCATAAAGC+AGG - chr6_4:1148785-1148804 Msa0969720:exon 40.0%
CGATAAGGAAAAGGTTCAAG+AGG + chr6_4:1148824-1148843 None:intergenic 40.0%
CTGACATGTCACGATGAGTA+CGG - chr6_4:1144791-1144810 Msa0969720:three_prime_UTR 45.0%
! CGATCGAAAGAAGGTGTATC+TGG - chr6_4:1145260-1145279 Msa0969720:intron 45.0%
AACACCTACACATGTGTCGT+CGG + chr6_4:1145291-1145310 None:intergenic 45.0%
TCTCTCTGTGCACAATCCAA+TGG - chr6_4:1145377-1145396 Msa0969720:intron 45.0%
TGTGCACAATCCAATGGCAT+TGG - chr6_4:1145383-1145402 Msa0969720:intron 45.0%
GTGCACAATCCAATGGCATT+GGG - chr6_4:1145384-1145403 Msa0969720:intron 45.0%
CAACATGAACCCAATGCCAT+TGG + chr6_4:1145396-1145415 None:intergenic 45.0%
TGGAGGAGTTCGATTGCTTA+TGG - chr6_4:1145460-1145479 Msa0969720:intron 45.0%
TGATACTAACATCCCTCGTC+AGG - chr6_4:1145562-1145581 Msa0969720:intron 45.0%
AACCGAATCAGGACGATTCA+AGG + chr6_4:1146124-1146143 None:intergenic 45.0%
!!! TCGTCCTGATTCGGTTCTTT+TGG - chr6_4:1146128-1146147 Msa0969720:intron 45.0%
CTGGTGAGACATATAGGGTA+TGG + chr6_4:1146194-1146213 None:intergenic 45.0%
TAATTTGGGCCGCGACATAA+AGG + chr6_4:1146337-1146356 None:intergenic 45.0%
GTAACATGGCCGTGACATAA+AGG + chr6_4:1146381-1146400 None:intergenic 45.0%
! GTGTTTCAGAGTGGACTTTC+GGG - chr6_4:1146638-1146657 Msa0969720:intron 45.0%
TAGGCATCTAATCAAGGTGG+AGG - chr6_4:1146715-1146734 Msa0969720:intron 45.0%
TCTGCTGCAAGGATAAGGTT+AGG + chr6_4:1146746-1146765 None:intergenic 45.0%
CTTTCTCTGCTGCAAGGATA+AGG + chr6_4:1146751-1146770 None:intergenic 45.0%
CTTGCAGCAGAGAAAGAACT+GGG - chr6_4:1146755-1146774 Msa0969720:intron 45.0%
AGTTGCAGGTCTTCAAGATC+GGG - chr6_4:1146781-1146800 Msa0969720:CDS 45.0%
GGGAGTAGACTCAAATCCAT+TGG + chr6_4:1146980-1146999 None:intergenic 45.0%
CAGCGAATCCTAGTGATTCT+GGG - chr6_4:1147020-1147039 Msa0969720:CDS 45.0%
! GAATCCTAGTGATTCTGGGA+AGG - chr6_4:1147024-1147043 Msa0969720:CDS 45.0%
CTAACCTTCCCAGAATCACT+AGG + chr6_4:1147031-1147050 None:intergenic 45.0%
GGAAGGTTAGTGTCATCGAA+TGG - chr6_4:1147041-1147060 Msa0969720:CDS 45.0%
TTGCTGTAGCATGTGCTATG+AGG - chr6_4:1147239-1147258 Msa0969720:intron 45.0%
TGTGCTATGAGGCTAAGAAG+AGG - chr6_4:1147250-1147269 Msa0969720:intron 45.0%
ATAGTAAAGTACGGCAGAGG+TGG - chr6_4:1147457-1147476 Msa0969720:intron 45.0%
!! ACCGAAATTTTGACCTGCGA+AGG - chr6_4:1147592-1147611 Msa0969720:intron 45.0%
TTGATAGGTAGTCCTTCCCT+TGG - chr6_4:1147727-1147746 Msa0969720:intron 45.0%
! TAGTCCTTCCCTTGGTTCTT+TGG - chr6_4:1147735-1147754 Msa0969720:intron 45.0%
CATCGTATTCAACAAGGGTC+TGG - chr6_4:1148017-1148036 Msa0969720:intron 45.0%
GCTAAGGACCACAACTAATC+TGG - chr6_4:1148277-1148296 Msa0969720:CDS 45.0%
TATTTGGGTGTTAGGTGGAG+AGG + chr6_4:1148352-1148371 None:intergenic 45.0%
AATGGTAGAGGTTGCTAGGA+AGG - chr6_4:1148679-1148698 Msa0969720:CDS 45.0%
GGAGCCGCATCAAAATTTAC+AGG - chr6_4:1148704-1148723 Msa0969720:CDS 45.0%
CTGACATGTCACGATGAGTA+CGG - chr6_4:1144791-1144810 Msa0969720:three_prime_UTR 45.0%
! CGATCGAAAGAAGGTGTATC+TGG - chr6_4:1145260-1145279 Msa0969720:intron 45.0%
AACACCTACACATGTGTCGT+CGG + chr6_4:1145291-1145310 None:intergenic 45.0%
TCTCTCTGTGCACAATCCAA+TGG - chr6_4:1145377-1145396 Msa0969720:intron 45.0%
TGTGCACAATCCAATGGCAT+TGG - chr6_4:1145383-1145402 Msa0969720:intron 45.0%
GTGCACAATCCAATGGCATT+GGG - chr6_4:1145384-1145403 Msa0969720:intron 45.0%
CAACATGAACCCAATGCCAT+TGG + chr6_4:1145396-1145415 None:intergenic 45.0%
TGGAGGAGTTCGATTGCTTA+TGG - chr6_4:1145460-1145479 Msa0969720:intron 45.0%
TGATACTAACATCCCTCGTC+AGG - chr6_4:1145562-1145581 Msa0969720:intron 45.0%
AACCGAATCAGGACGATTCA+AGG + chr6_4:1146124-1146143 None:intergenic 45.0%
!!! TCGTCCTGATTCGGTTCTTT+TGG - chr6_4:1146128-1146147 Msa0969720:intron 45.0%
CTGGTGAGACATATAGGGTA+TGG + chr6_4:1146194-1146213 None:intergenic 45.0%
TAATTTGGGCCGCGACATAA+AGG + chr6_4:1146337-1146356 None:intergenic 45.0%
GTAACATGGCCGTGACATAA+AGG + chr6_4:1146381-1146400 None:intergenic 45.0%
! GTGTTTCAGAGTGGACTTTC+GGG - chr6_4:1146638-1146657 Msa0969720:intron 45.0%
TAGGCATCTAATCAAGGTGG+AGG - chr6_4:1146715-1146734 Msa0969720:intron 45.0%
TCTGCTGCAAGGATAAGGTT+AGG + chr6_4:1146746-1146765 None:intergenic 45.0%
CTTTCTCTGCTGCAAGGATA+AGG + chr6_4:1146751-1146770 None:intergenic 45.0%
CTTGCAGCAGAGAAAGAACT+GGG - chr6_4:1146755-1146774 Msa0969720:intron 45.0%
AGTTGCAGGTCTTCAAGATC+GGG - chr6_4:1146781-1146800 Msa0969720:CDS 45.0%
GGGAGTAGACTCAAATCCAT+TGG + chr6_4:1146980-1146999 None:intergenic 45.0%
CAGCGAATCCTAGTGATTCT+GGG - chr6_4:1147020-1147039 Msa0969720:CDS 45.0%
! GAATCCTAGTGATTCTGGGA+AGG - chr6_4:1147024-1147043 Msa0969720:CDS 45.0%
CTAACCTTCCCAGAATCACT+AGG + chr6_4:1147031-1147050 None:intergenic 45.0%
GGAAGGTTAGTGTCATCGAA+TGG - chr6_4:1147041-1147060 Msa0969720:CDS 45.0%
TTGCTGTAGCATGTGCTATG+AGG - chr6_4:1147239-1147258 Msa0969720:intron 45.0%
TGTGCTATGAGGCTAAGAAG+AGG - chr6_4:1147250-1147269 Msa0969720:intron 45.0%
ATAGTAAAGTACGGCAGAGG+TGG - chr6_4:1147457-1147476 Msa0969720:intron 45.0%
!! ACCGAAATTTTGACCTGCGA+AGG - chr6_4:1147592-1147611 Msa0969720:intron 45.0%
TTGATAGGTAGTCCTTCCCT+TGG - chr6_4:1147727-1147746 Msa0969720:intron 45.0%
! TAGTCCTTCCCTTGGTTCTT+TGG - chr6_4:1147735-1147754 Msa0969720:intron 45.0%
CATCGTATTCAACAAGGGTC+TGG - chr6_4:1148017-1148036 Msa0969720:intron 45.0%
GCTAAGGACCACAACTAATC+TGG - chr6_4:1148277-1148296 Msa0969720:CDS 45.0%
TATTTGGGTGTTAGGTGGAG+AGG + chr6_4:1148352-1148371 None:intergenic 45.0%
AATGGTAGAGGTTGCTAGGA+AGG - chr6_4:1148679-1148698 Msa0969720:CDS 45.0%
GGAGCCGCATCAAAATTTAC+AGG - chr6_4:1148704-1148723 Msa0969720:CDS 45.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - chr6_4:1148475-1148494 Msa0969720:intron 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - chr6_4:1148475-1148494 Msa0969720:intron 5.0%
GTTTCCGTGTGAGAATGAGG+TGG + chr6_4:1144670-1144689 None:intergenic 50.0%
TCATCGTGACATGTCAGCAG+GGG + chr6_4:1144788-1144807 None:intergenic 50.0%
CTCATCGTGACATGTCAGCA+GGG + chr6_4:1144789-1144808 None:intergenic 50.0%
ACTCATCGTGACATGTCAGC+AGG + chr6_4:1144790-1144809 None:intergenic 50.0%
GTCACGATGAGTACGGTATG+AGG - chr6_4:1144798-1144817 Msa0969720:three_prime_UTR 50.0%
GTATCCGACGACACATGTGT+AGG - chr6_4:1145284-1145303 Msa0969720:intron 50.0%
ACACTGATCACGACACAACC+AGG + chr6_4:1146021-1146040 None:intergenic 50.0%
GATGTGAGTGACGTCAATCG+CGG - chr6_4:1146288-1146307 Msa0969720:CDS 50.0%
TAACCAGTACAGTGCCCTGA+AGG - chr6_4:1146501-1146520 Msa0969720:intron 50.0%
!! AGTGGACTTTCGGGTTCTAG+TGG - chr6_4:1146647-1146666 Msa0969720:intron 50.0%
!! GTGGACTTTCGGGTTCTAGT+GGG - chr6_4:1146648-1146667 Msa0969720:intron 50.0%
CCAGTTCTTTCTCTGCTGCA+AGG + chr6_4:1146757-1146776 None:intergenic 50.0%
CCTTGCAGCAGAGAAAGAAC+TGG - chr6_4:1146754-1146773 Msa0969720:intron 50.0%
GCAGCGAATCCTAGTGATTC+TGG - chr6_4:1147019-1147038 Msa0969720:CDS 50.0%
GTGGCATGTATTGCGAGAGA+AGG - chr6_4:1147519-1147538 Msa0969720:intron 50.0%
AGTGGGGACCAAAGAACCAA+GGG + chr6_4:1147746-1147765 None:intergenic 50.0%
TAGTGGGGACCAAAGAACCA+AGG + chr6_4:1147747-1147766 None:intergenic 50.0%
GGAGTTGAGCTCAGTATCGT+CGG - chr6_4:1147866-1147885 Msa0969720:intron 50.0%
AGCACAAGTTCTTCCCCAGT+CGG - chr6_4:1147977-1147996 Msa0969720:intron 50.0%
TCTGCGTGGCATCTTTCTTG+TGG + chr6_4:1148068-1148087 None:intergenic 50.0%
! CATGCTGGCTGTCTAACTTC+CGG - chr6_4:1148095-1148114 Msa0969720:intron 50.0%
GTAGAGGTTGCTAGGAAGGT+TGG - chr6_4:1148683-1148702 Msa0969720:CDS 50.0%
TTTGCTTGAGAAGTCCCCTC+AGG + chr6_4:1148758-1148777 None:intergenic 50.0%
TGGGATGGATGTGCTTCTTC+TGG + chr6_4:1148918-1148937 None:intergenic 50.0%
GTTTCCGTGTGAGAATGAGG+TGG + chr6_4:1144670-1144689 None:intergenic 50.0%
TCATCGTGACATGTCAGCAG+GGG + chr6_4:1144788-1144807 None:intergenic 50.0%
CTCATCGTGACATGTCAGCA+GGG + chr6_4:1144789-1144808 None:intergenic 50.0%
ACTCATCGTGACATGTCAGC+AGG + chr6_4:1144790-1144809 None:intergenic 50.0%
GTCACGATGAGTACGGTATG+AGG - chr6_4:1144798-1144817 Msa0969720:three_prime_UTR 50.0%
GTATCCGACGACACATGTGT+AGG - chr6_4:1145284-1145303 Msa0969720:intron 50.0%
ACACTGATCACGACACAACC+AGG + chr6_4:1146021-1146040 None:intergenic 50.0%
GATGTGAGTGACGTCAATCG+CGG - chr6_4:1146288-1146307 Msa0969720:CDS 50.0%
TAACCAGTACAGTGCCCTGA+AGG - chr6_4:1146501-1146520 Msa0969720:intron 50.0%
!! AGTGGACTTTCGGGTTCTAG+TGG - chr6_4:1146647-1146666 Msa0969720:intron 50.0%
!! GTGGACTTTCGGGTTCTAGT+GGG - chr6_4:1146648-1146667 Msa0969720:intron 50.0%
CCAGTTCTTTCTCTGCTGCA+AGG + chr6_4:1146757-1146776 None:intergenic 50.0%
CCTTGCAGCAGAGAAAGAAC+TGG - chr6_4:1146754-1146773 Msa0969720:intron 50.0%
GCAGCGAATCCTAGTGATTC+TGG - chr6_4:1147019-1147038 Msa0969720:CDS 50.0%
GTGGCATGTATTGCGAGAGA+AGG - chr6_4:1147519-1147538 Msa0969720:intron 50.0%
AGTGGGGACCAAAGAACCAA+GGG + chr6_4:1147746-1147765 None:intergenic 50.0%
TAGTGGGGACCAAAGAACCA+AGG + chr6_4:1147747-1147766 None:intergenic 50.0%
GGAGTTGAGCTCAGTATCGT+CGG - chr6_4:1147866-1147885 Msa0969720:intron 50.0%
AGCACAAGTTCTTCCCCAGT+CGG - chr6_4:1147977-1147996 Msa0969720:intron 50.0%
TCTGCGTGGCATCTTTCTTG+TGG + chr6_4:1148068-1148087 None:intergenic 50.0%
! CATGCTGGCTGTCTAACTTC+CGG - chr6_4:1148095-1148114 Msa0969720:intron 50.0%
GTAGAGGTTGCTAGGAAGGT+TGG - chr6_4:1148683-1148702 Msa0969720:CDS 50.0%
TTTGCTTGAGAAGTCCCCTC+AGG + chr6_4:1148758-1148777 None:intergenic 50.0%
TGGGATGGATGTGCTTCTTC+TGG + chr6_4:1148918-1148937 None:intergenic 50.0%
GTCGCCACCTCATTCTCACA+CGG - chr6_4:1144663-1144682 Msa0969720:three_prime_UTR 55.0%
TCGCGGCCCAAATTAGAGTC+AGG - chr6_4:1146342-1146361 Msa0969720:intron 55.0%
TCCGGCTAAGAACGCCTTCA+GGG + chr6_4:1146518-1146537 None:intergenic 55.0%
ATCCGGCTAAGAACGCCTTC+AGG + chr6_4:1146519-1146538 None:intergenic 55.0%
TGCAGGTCTTCAAGATCGGG+TGG - chr6_4:1146784-1146803 Msa0969720:CDS 55.0%
GATCGGGTGGCGCAAGTTTA+TGG - chr6_4:1146797-1146816 Msa0969720:CDS 55.0%
GGGACCAAAGAACCAAGGGA+AGG + chr6_4:1147742-1147761 None:intergenic 55.0%
CCACTGGGGTTTAGCACAAG+TGG + chr6_4:1147923-1147942 None:intergenic 55.0%
CCACTTGTGCTAAACCCCAG+TGG - chr6_4:1147920-1147939 Msa0969720:intron 55.0%
CGGAAGTTAGACAGCCAGCA+TGG + chr6_4:1148097-1148116 None:intergenic 55.0%
GTCGCCACCTCATTCTCACA+CGG - chr6_4:1144663-1144682 Msa0969720:three_prime_UTR 55.0%
TCGCGGCCCAAATTAGAGTC+AGG - chr6_4:1146342-1146361 Msa0969720:intron 55.0%
TCCGGCTAAGAACGCCTTCA+GGG + chr6_4:1146518-1146537 None:intergenic 55.0%
ATCCGGCTAAGAACGCCTTC+AGG + chr6_4:1146519-1146538 None:intergenic 55.0%
TGCAGGTCTTCAAGATCGGG+TGG - chr6_4:1146784-1146803 Msa0969720:CDS 55.0%
GATCGGGTGGCGCAAGTTTA+TGG - chr6_4:1146797-1146816 Msa0969720:CDS 55.0%
GGGACCAAAGAACCAAGGGA+AGG + chr6_4:1147742-1147761 None:intergenic 55.0%
CCACTGGGGTTTAGCACAAG+TGG + chr6_4:1147923-1147942 None:intergenic 55.0%
CCACTTGTGCTAAACCCCAG+TGG - chr6_4:1147920-1147939 Msa0969720:intron 55.0%
CGGAAGTTAGACAGCCAGCA+TGG + chr6_4:1148097-1148116 None:intergenic 55.0%
CATGTCAGCAGGGGTGGGAT+TGG + chr6_4:1144779-1144798 None:intergenic 60.0%
CGTGACATGTCAGCAGGGGT+GGG + chr6_4:1144784-1144803 None:intergenic 60.0%
TCGTGACATGTCAGCAGGGG+TGG + chr6_4:1144785-1144804 None:intergenic 60.0%
TGCAGCAGCAGCAGCAGCAA+TGG - chr6_4:1144990-1145009 Msa0969720:CDS 60.0%
!! ACGCCTTCAGGGCACTGTAC+TGG + chr6_4:1146507-1146526 None:intergenic 60.0%
!! GCCCTGAAGGCGTTCTTAGC+CGG - chr6_4:1146514-1146533 Msa0969720:intron 60.0%
CGGGTGGCGCAAGTTTATGG+TGG - chr6_4:1146800-1146819 Msa0969720:CDS 60.0%
GTACGGCAGAGGTGGCTTGA+TGG - chr6_4:1147465-1147484 Msa0969720:intron 60.0%
CAGCATGGAGCTTGTCTGCG+TGG + chr6_4:1148082-1148101 None:intergenic 60.0%
CACGCAGACAAGCTCCATGC+TGG - chr6_4:1148080-1148099 Msa0969720:intron 60.0%
CATGTCAGCAGGGGTGGGAT+TGG + chr6_4:1144779-1144798 None:intergenic 60.0%
CGTGACATGTCAGCAGGGGT+GGG + chr6_4:1144784-1144803 None:intergenic 60.0%
TCGTGACATGTCAGCAGGGG+TGG + chr6_4:1144785-1144804 None:intergenic 60.0%
TGCAGCAGCAGCAGCAGCAA+TGG - chr6_4:1144990-1145009 Msa0969720:CDS 60.0%
!! ACGCCTTCAGGGCACTGTAC+TGG + chr6_4:1146507-1146526 None:intergenic 60.0%
!! GCCCTGAAGGCGTTCTTAGC+CGG - chr6_4:1146514-1146533 Msa0969720:intron 60.0%
CGGGTGGCGCAAGTTTATGG+TGG - chr6_4:1146800-1146819 Msa0969720:CDS 60.0%
GTACGGCAGAGGTGGCTTGA+TGG - chr6_4:1147465-1147484 Msa0969720:intron 60.0%
CAGCATGGAGCTTGTCTGCG+TGG + chr6_4:1148082-1148101 None:intergenic 60.0%
CACGCAGACAAGCTCCATGC+TGG - chr6_4:1148080-1148099 Msa0969720:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1144627 1149180 1144627 ID=Msa0969720;Name=Msa0969720
chr6_4 mRNA 1144627 1149180 1144627 ID=Msa0969720-mRNA-1;Parent=Msa0969720;Name=Msa0969720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=382|1|1|1|1|1|6|291|355
chr6_4 exon 1144627 1145170 1144627 ID=Msa0969720-mRNA-1:exon:608;Parent=Msa0969720-mRNA-1
chr6_4 exon 1146194 1146354 1146194 ID=Msa0969720-mRNA-1:exon:607;Parent=Msa0969720-mRNA-1
chr6_4 exon 1146762 1146878 1146762 ID=Msa0969720-mRNA-1:exon:606;Parent=Msa0969720-mRNA-1
chr6_4 exon 1146972 1147160 1146972 ID=Msa0969720-mRNA-1:exon:605;Parent=Msa0969720-mRNA-1
chr6_4 exon 1148224 1148376 1148224 ID=Msa0969720-mRNA-1:exon:604;Parent=Msa0969720-mRNA-1
chr6_4 exon 1148604 1149180 1148604 ID=Msa0969720-mRNA-1:exon:603;Parent=Msa0969720-mRNA-1
chr6_4 five_prime_UTR 1148799 1149180 1148799 ID=Msa0969720-mRNA-1:five_prime_utr;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1148604 1148798 1148604 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1148224 1148376 1148224 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1146972 1147160 1146972 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1146762 1146878 1146762 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1146194 1146354 1146194 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 CDS 1144918 1145170 1144918 ID=Msa0969720-mRNA-1:cds;Parent=Msa0969720-mRNA-1
chr6_4 three_prime_UTR 1144627 1144917 1144627 ID=Msa0969720-mRNA-1:three_prime_utr;Parent=Msa0969720-mRNA-1
Gene Sequence

>Msa0969720

ATGGAAGTGATTGAACACAAAGCATATGCAAGAGTTGGATTGTTAGGAAATCCAAGCGATGTTTATTACGGCAAAACAATCGCTTTCAGTATTTCCAATTTCTTTGCAACCGTTAAGCTCGTTCCTTCCAATGAACTCATCATTCAACCTCATCCTACTCATGATCTTGTCAACTTCTCTTCTCATCATCAACTGGTTGATAGGATAAATGCTGAAGGTTATTATGGAGGAGTTCGATTGCTTATGGCTATTTATAAAGTTTTTTATTATTATTGTAAAGATAATAATATTCATCTTCTTCATCATTCCAATTTCACTCTCTCCTATGATACTAACATCCCTCGTCAGAGTGGACTTTCGGGTTCTAGTGGGATTGTGTGTGCTGCCTTGAACTGCTTTCTTGATTTCTACAAAGTTAGGCATCTAATCAAGGTGGAGGTTAGGCCTAACCTTATCCTTGCAGCAGAGAAAGAACTGGGAATAGTTGCAGGTCTTCAAGATCGGGTGGCGCAAGTTTATGGTGGACTAGTTTACATGAACTTCAACAAGGAAAACATGGATAAACTAGGGCATGGAATTTATACACCAATGGATTTGAGTCTACTCCCACCTCTATACCTTATCTATGCAGCGAATCCTAGTGATTCTGGGAAGGTTCATAGTAAAGTACGGCAGAGGTGGCTTGATGGTGACGAGTTCATTGTGAAATCAATGCTTGAAGTGGCATGTATTGCGAGAGAAGGAAAGGCAGCATTAGAAGAAAAGAACTATTCCAAACTTGCATCTCTCATGAACCGAAATTTTGACCTGCGAAGGTCAATGTTTGGAGATGATGCACTTGGTGATGTGAACATAAAAATGGTAGAGGTTGCTAGGAAGGTTGGAGCCGCATCAAAATTTACAGGTAGCGGAGGAGCTGTTGTTGCATATTGTCCTGAGGGGACTTCTCAAGCAAAGCTTCTTGAGGATGAATGTCATAAAGCAGGATTTGTTTTGATACCTCTTGAACCTTTTCCTTATCGTTTAAATGAAACGGACTTTGAAAACCCTGAAGATGTAATGTACTAG

Protein sequence

>Msa0969720

MEVIEHKAYARVGLLGNPSDVYYGKTIAFSISNFFATVKLVPSNELIIQPHPTHDLVNFSSHHQLVDRINAEGYYGGVRLLMAIYKVFYYYCKDNNIHLLHHSNFTLSYDTNIPRQSGLSGSSGIVCAALNCFLDFYKVRHLIKVEVRPNLILAAEKELGIVAGLQDRVAQVYGGLVYMNFNKENMDKLGHGIYTPMDLSLLPPLYLIYAANPSDSGKVHSKVRQRWLDGDEFIVKSMLEVACIAREGKAALEEKNYSKLASLMNRNFDLRRSMFGDDALGDVNIKMVEVARKVGAASKFTGSGGAVVAYCPEGTSQAKLLEDECHKAGFVLIPLEPFPYRLNETDFENPEDVMY*