Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012200 | sp|Q8GUU2|RIE1_ARATH | 65.116 | 344 | 111 | 3 | 11 | 348 | 15 | 355 | 5.46e-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012200 | Msa0028620 | 0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0012200 | Msa0030700 | 0.813749 | 2.186481e-51 | -8.615850e-47 |
| Msa0012200 | Msa0032080 | 0.819600 | 1.066418e-52 | -8.615850e-47 |
| Msa0012200 | Msa0032100 | 0.818468 | 1.929517e-52 | -8.615850e-47 |
| Msa0012200 | Msa0051960 | 0.807485 | 4.939953e-50 | -8.615850e-47 |
| Msa0012200 | Msa0061220 | 0.846317 | 2.343496e-59 | -8.615850e-47 |
| Msa0012200 | Msa0078120 | 0.800667 | 1.294327e-48 | -8.615850e-47 |
| Msa0012200 | Msa0081020 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
| Msa0012200 | Msa0094710 | 0.803372 | 3.596942e-49 | -8.615850e-47 |
| Msa0012200 | Msa0101500 | -0.806517 | 7.915485e-50 | -8.615850e-47 |
| Msa0012200 | Msa0101960 | 0.817526 | 3.150352e-52 | -8.615850e-47 |
| Msa0012200 | Msa0108760 | 0.908895 | 1.036518e-81 | -8.615850e-47 |
| Msa0012200 | Msa0115790 | 0.816361 | 5.753515e-52 | -8.615850e-47 |
| Msa0012200 | Msa0117520 | 0.850681 | 1.451330e-60 | -8.615850e-47 |
| Msa0012200 | Msa0124320 | 0.818428 | 1.970525e-52 | -8.615850e-47 |
| Msa0012200 | Msa0144530 | 0.805175 | 1.515540e-49 | -8.615850e-47 |
| Msa0012200 | Msa0160960 | 0.826202 | 3.087122e-54 | -8.615850e-47 |
| Msa0012200 | Msa0168690 | 0.809061 | 2.278875e-50 | -8.615850e-47 |
| Msa0012200 | Msa0172080 | 0.805823 | 1.108125e-49 | -8.615850e-47 |
| Msa0012200 | Msa0179270 | 0.811789 | 5.874170e-51 | -8.615850e-47 |
| Msa0012200 | Msa0218370 | 0.822394 | 2.425338e-53 | -8.615850e-47 |
| Msa0012200 | Msa0261090 | 0.803937 | 2.746978e-49 | -8.615850e-47 |
| Msa0012200 | Msa0282780 | 0.819320 | 1.235876e-52 | -8.615850e-47 |
| Msa0012200 | Msa0287870 | 0.829999 | 3.759946e-55 | -8.615850e-47 |
| Msa0012200 | Msa0291280 | 0.801462 | 8.903689e-49 | -8.615850e-47 |
| Msa0012200 | Msa0319020 | 0.805721 | 1.164060e-49 | -8.615850e-47 |
| Msa0012200 | Msa0395750 | 0.806181 | 9.318648e-50 | -8.615850e-47 |
| Msa0012200 | Msa0434540 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0012200 | Msa0455760 | 0.814563 | 1.445878e-51 | -8.615850e-47 |
| Msa0012200 | Msa0527540 | 0.817110 | 3.907377e-52 | -8.615850e-47 |
| Msa0012200 | Msa0534150 | 0.801163 | 1.025076e-48 | -8.615850e-47 |
| Msa0012200 | Msa0535630 | 0.823422 | 1.396896e-53 | -8.615850e-47 |
| Msa0012200 | Msa0545050 | 0.856939 | 2.291258e-62 | -8.615850e-47 |
| Msa0012200 | Msa0567520 | 0.823682 | 1.214610e-53 | -8.615850e-47 |
| Msa0012200 | Msa0581400 | 0.811259 | 7.656002e-51 | -8.615850e-47 |
| Msa0012200 | Msa0600590 | 0.841517 | 4.528640e-58 | -8.615850e-47 |
| Msa0012200 | Msa0641130 | 0.862680 | 4.269899e-64 | -8.615850e-47 |
| Msa0012200 | Msa0645530 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa0012200 | Msa0647030 | 0.819439 | 1.161062e-52 | -8.615850e-47 |
| Msa0012200 | Msa0672760 | 0.804982 | 1.663167e-49 | -8.615850e-47 |
| Msa0012200 | Msa0673120 | 0.836920 | 7.049937e-57 | -8.615850e-47 |
| Msa0012200 | Msa0679030 | 0.829479 | 5.031947e-55 | -8.615850e-47 |
| Msa0012200 | Msa0685090 | 0.811080 | 8.371102e-51 | -8.615850e-47 |
| Msa0012200 | Msa0795340 | 0.806512 | 7.934880e-50 | -8.615850e-47 |
| Msa0012200 | Msa0797770 | 0.811149 | 8.086617e-51 | -8.615850e-47 |
| Msa0012200 | Msa0823540 | 0.801808 | 7.561490e-49 | -8.615850e-47 |
| Msa0012200 | Msa0835230 | 0.823139 | 1.626295e-53 | -8.615850e-47 |
| Msa0012200 | Msa0863990 | 0.806542 | 7.821849e-50 | -8.615850e-47 |
| Msa0012200 | Msa0894710 | 0.808999 | 2.349471e-50 | -8.615850e-47 |
| Msa0012200 | Msa0910620 | 0.808618 | 2.835399e-50 | -8.615850e-47 |
| Msa0012200 | Msa0960390 | 0.800575 | 1.351158e-48 | -8.615850e-47 |
| Msa0012200 | Msa0960880 | -0.805906 | 1.064433e-49 | -8.615850e-47 |
| Msa0012200 | Msa0965290 | 0.803497 | 3.389175e-49 | -8.615850e-47 |
| Msa0012200 | Msa0994250 | -0.813185 | 2.909317e-51 | -8.615850e-47 |
| Msa0012200 | Msa0999680 | 0.800968 | 1.123416e-48 | -8.615850e-47 |
| Msa0012200 | Msa1011250 | 0.807284 | 5.448741e-50 | -8.615850e-47 |
| Msa0012200 | Msa1117240 | 0.807039 | 6.141937e-50 | -8.615850e-47 |
| Msa0012200 | Msa1122150 | 0.857000 | 2.198514e-62 | -8.615850e-47 |
| Msa0012200 | Msa1137780 | 0.807919 | 3.995077e-50 | -8.615850e-47 |
| Msa0012200 | Msa1158390 | 0.808093 | 3.667869e-50 | -8.615850e-47 |
| Msa0012200 | Msa1160560 | 0.861600 | 9.157983e-64 | -8.615850e-47 |
| Msa0012200 | Msa1208990 | 0.809969 | 1.454580e-50 | -8.615850e-47 |
| Msa0012200 | Msa1212050 | 0.823924 | 1.065794e-53 | -8.615850e-47 |
| Msa0012200 | Msa1212130 | 0.808973 | 2.380175e-50 | -8.615850e-47 |
| Msa0012200 | Msa1221330 | 0.830013 | 3.729717e-55 | -8.615850e-47 |
| Msa0012200 | Msa1236440 | 0.854234 | 1.409600e-61 | -8.615850e-47 |
| Msa0012200 | Msa1239620 | 0.833658 | 4.698714e-56 | -8.615850e-47 |
| Msa0012200 | Msa1256060 | 0.825249 | 5.196491e-54 | -8.615850e-47 |
| Msa0012200 | Msa1259860 | 0.817548 | 3.114317e-52 | -8.615850e-47 |
| Msa0012200 | Msa1272010 | 0.817441 | 3.292486e-52 | -8.615850e-47 |
| Msa0012200 | Msa1277670 | 0.850024 | 2.218426e-60 | -8.615850e-47 |
| Msa0012200 | Msa1282440 | 0.820577 | 6.374882e-53 | -8.615850e-47 |
| Msa0012200 | Msa1352280 | -0.815350 | 9.671924e-52 | -8.615850e-47 |
| Msa0012200 | Msa1369920 | -0.822050 | 2.914349e-53 | -8.615850e-47 |
| Msa0012200 | Msa1386890 | 0.804356 | 2.247280e-49 | -8.615850e-47 |
| Msa0012200 | Msa1400930 | 0.821045 | 4.974285e-53 | -8.615850e-47 |
| Msa0012200 | Msa1419840 | 0.857623 | 1.438417e-62 | -8.615850e-47 |
| Msa0012200 | Msa1442920 | 0.825386 | 4.821276e-54 | -8.615850e-47 |
| Msa0012200 | Msa1452710 | 0.806445 | 8.196339e-50 | -8.615850e-47 |
| Msa0012200 | Msa1458680 | 0.832506 | 9.092700e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012200 | MtrunA17_Chr1g0161291 | 97.151 | 351 | 9 | 1 | 1 | 351 | 1 | 350 | 0.0 | 709 |
| Msa0012200 | MtrunA17_Chr8g0391751 | 69.971 | 343 | 87 | 5 | 11 | 351 | 8 | 336 | 3.00e-171 | 479 |
| Msa0012200 | MtrunA17_Chr4g0057351 | 48.907 | 366 | 160 | 10 | 12 | 351 | 7 | 371 | 2.45e-113 | 334 |
| Msa0012200 | MtrunA17_Chr5g0397921 | 51.320 | 341 | 143 | 6 | 34 | 351 | 47 | 387 | 8.84e-102 | 305 |
| Msa0012200 | MtrunA17_Chr7g0246571 | 51.118 | 313 | 144 | 5 | 42 | 348 | 51 | 360 | 1.70e-90 | 275 |
| Msa0012200 | MtrunA17_Chr7g0255261 | 46.021 | 289 | 128 | 4 | 65 | 351 | 35 | 297 | 3.93e-79 | 244 |
| Msa0012200 | MtrunA17_Chr1g0148631 | 32.075 | 318 | 177 | 9 | 59 | 344 | 75 | 385 | 9.79e-41 | 147 |
| Msa0012200 | MtrunA17_Chr3g0138451 | 30.897 | 301 | 174 | 9 | 70 | 344 | 69 | 361 | 8.16e-39 | 142 |
| Msa0012200 | MtrunA17_Chr7g0255321 | 39.500 | 200 | 96 | 5 | 164 | 348 | 102 | 291 | 7.36e-36 | 132 |
| Msa0012200 | MtrunA17_Chr7g0255331 | 39.000 | 200 | 103 | 5 | 164 | 351 | 106 | 298 | 2.12e-33 | 125 |
| Msa0012200 | MtrunA17_Chr3g0102761 | 28.889 | 270 | 164 | 6 | 81 | 346 | 88 | 333 | 2.33e-30 | 118 |
| Msa0012200 | MtrunA17_Chr5g0446921 | 26.437 | 261 | 167 | 3 | 84 | 341 | 97 | 335 | 2.35e-22 | 96.3 |
| Msa0012200 | MtrunA17_Chr8g0388231 | 32.000 | 125 | 77 | 3 | 225 | 341 | 255 | 379 | 7.30e-12 | 66.2 |
| Msa0012200 | MtrunA17_Chr8g0388201 | 55.769 | 52 | 22 | 1 | 291 | 341 | 338 | 389 | 1.03e-11 | 65.5 |
| Msa0012200 | MtrunA17_Chr4g0065171 | 52.830 | 53 | 23 | 2 | 297 | 347 | 480 | 532 | 2.11e-11 | 65.1 |
| Msa0012200 | MtrunA17_Chr8g0369691 | 54.545 | 55 | 23 | 2 | 296 | 348 | 440 | 494 | 6.50e-11 | 63.5 |
| Msa0012200 | MtrunA17_Chr6g0461611 | 35.616 | 73 | 47 | 0 | 272 | 344 | 208 | 280 | 8.96e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012200 | AT1G68070.1 | 68.035 | 341 | 95 | 5 | 12 | 350 | 14 | 342 | 2.21e-170 | 478 |
| Msa0012200 | AT2G01735.1 | 65.116 | 344 | 111 | 3 | 11 | 348 | 15 | 355 | 5.55e-160 | 452 |
| Msa0012200 | AT3G61180.1 | 51.156 | 346 | 142 | 6 | 28 | 351 | 39 | 379 | 1.48e-117 | 345 |
| Msa0012200 | AT4G11680.1 | 54.790 | 334 | 140 | 5 | 26 | 351 | 60 | 390 | 1.83e-109 | 325 |
| Msa0012200 | AT4G11680.2 | 50.413 | 363 | 140 | 6 | 26 | 351 | 60 | 419 | 4.80e-103 | 310 |
| Msa0012200 | AT2G01735.2 | 65.000 | 240 | 75 | 3 | 11 | 244 | 15 | 251 | 2.15e-102 | 302 |
| Msa0012200 | AT1G12760.1 | 51.558 | 353 | 137 | 7 | 27 | 348 | 52 | 401 | 5.61e-102 | 306 |
| Msa0012200 | AT1G12760.2 | 52.108 | 332 | 131 | 4 | 42 | 348 | 2 | 330 | 2.20e-101 | 302 |
| Msa0012200 | AT1G63170.1 | 51.603 | 343 | 138 | 5 | 32 | 348 | 33 | 373 | 5.41e-95 | 288 |
| Msa0012200 | AT4G32600.1 | 29.316 | 307 | 187 | 8 | 70 | 351 | 113 | 414 | 3.71e-41 | 150 |
| Msa0012200 | AT4G32600.2 | 29.316 | 307 | 187 | 8 | 70 | 351 | 113 | 414 | 3.71e-41 | 150 |
| Msa0012200 | AT1G80400.1 | 28.099 | 363 | 209 | 10 | 20 | 344 | 51 | 399 | 1.24e-40 | 147 |
| Msa0012200 | AT5G55970.2 | 27.138 | 269 | 161 | 6 | 81 | 344 | 103 | 341 | 1.86e-24 | 102 |
| Msa0012200 | AT5G55970.1 | 27.138 | 269 | 161 | 6 | 81 | 344 | 103 | 341 | 1.86e-24 | 102 |
| Msa0012200 | AT4G26580.1 | 27.037 | 270 | 156 | 7 | 81 | 344 | 99 | 333 | 2.19e-24 | 102 |
| Msa0012200 | AT4G26580.2 | 27.037 | 270 | 156 | 7 | 81 | 344 | 99 | 333 | 2.19e-24 | 102 |
| Msa0012200 | AT1G55530.3 | 28.846 | 104 | 72 | 1 | 241 | 344 | 133 | 234 | 6.50e-12 | 66.2 |
| Msa0012200 | AT1G55530.1 | 30.612 | 98 | 66 | 1 | 247 | 344 | 172 | 267 | 1.35e-11 | 65.5 |
| Msa0012200 | AT1G55530.2 | 30.612 | 98 | 66 | 1 | 247 | 344 | 172 | 267 | 1.35e-11 | 65.5 |
Find 120 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTCGAAATCTGTATTT+TGG | 0.183808 | 1_1:-18347765 | None:intergenic |
| GTTATCCAATTATGGATTAT+TGG | 0.213917 | 1_1:+18348953 | Msa0012200:three_prime_UTR |
| ATTCTTCATGCATAATAAAA+TGG | 0.229080 | 1_1:+18348668 | Msa0012200:CDS |
| TGCCATCTTCTGTGTTGTTT+TGG | 0.232051 | 1_1:+18347548 | Msa0012200:CDS |
| ATTTGAAAGTTATCCAATTA+TGG | 0.244965 | 1_1:+18348945 | Msa0012200:three_prime_UTR |
| GATCTATTTAGAGAAGATTT+AGG | 0.264849 | 1_1:+18348856 | Msa0012200:three_prime_UTR |
| GTATGCACTGGTGGTTTCTA+TGG | 0.288910 | 1_1:-18347832 | None:intergenic |
| CGATGTGAATCAATAAATAC+TGG | 0.291284 | 1_1:+18346608 | Msa0012200:CDS |
| GAACTCCAATAATCCATAAT+TGG | 0.294125 | 1_1:-18348958 | None:intergenic |
| GAACAGGTATAACACCTTAC+TGG | 0.359646 | 1_1:+18348745 | Msa0012200:exon |
| ACTTCCCTCGCTCAGCTTCT+CGG | 0.363663 | 1_1:+18344655 | Msa0012200:CDS |
| GCTATTCTCTATGCTGTTGC+GGG | 0.374371 | 1_1:+18347618 | Msa0012200:CDS |
| TTGAGTATCACCGCCGTAAT+CGG | 0.376851 | 1_1:+18344929 | Msa0012200:CDS |
| ATACTGGGGTTTCATTCCTT+TGG | 0.381940 | 1_1:+18346624 | Msa0012200:CDS |
| AAAATAATTGTTGTTGAATA+CGG | 0.383185 | 1_1:-18344366 | None:intergenic |
| CTGGGGTTTCATTCCTTTGG+TGG | 0.384225 | 1_1:+18346627 | Msa0012200:CDS |
| TCCGCGAATCCCTCCGATTA+CGG | 0.391692 | 1_1:-18344942 | None:intergenic |
| CGAAGAACGTCGTGCCGATT+GGG | 0.394795 | 1_1:+18344738 | Msa0012200:CDS |
| GATGGTTGCAGGGAAGAGTA+TGG | 0.396930 | 1_1:-18348639 | None:intergenic |
| GGTTTCATTCCTTTGGTGGA+TGG | 0.399167 | 1_1:+18346631 | Msa0012200:CDS |
| TTCATTCCTTTGGTGGATGG+TGG | 0.402298 | 1_1:+18346634 | Msa0012200:CDS |
| ACACGTAAGTAACATATCTA+TGG | 0.403527 | 1_1:+18344299 | Msa0012200:five_prime_UTR |
| CGAACATGCCGATCCGCGTT+TGG | 0.419996 | 1_1:+18344857 | Msa0012200:CDS |
| TCTCTATGCTGTTGCGGGAC+AGG | 0.424869 | 1_1:+18347623 | Msa0012200:CDS |
| CATGGCGTTCGTTGTGGTAT+CGG | 0.429763 | 1_1:+18344801 | Msa0012200:CDS |
| GTGAAGAGAGTGAAAGAAAA+CGG | 0.432102 | 1_1:-18344460 | None:intergenic |
| CAAACGCGGATCGGCATGTT+CGG | 0.442712 | 1_1:-18344856 | None:intergenic |
| GGGATTCGCGGAGGAGGCAG+AGG | 0.449417 | 1_1:+18344953 | Msa0012200:CDS |
| TCATTCCTTTGGTGGATGGT+GGG | 0.449593 | 1_1:+18346635 | Msa0012200:CDS |
| GTTCACGCGCCGCCGTTTCG+CGG | 0.451877 | 1_1:-18344714 | None:intergenic |
| AGAATGGAAATGATGGTTGC+AGG | 0.452786 | 1_1:-18348650 | None:intergenic |
| GAATAAGTGATTATTTAAGA+AGG | 0.466555 | 1_1:-18344424 | None:intergenic |
| GAGAAGGATAGTGGTGGAGC+TGG | 0.468638 | 1_1:+18347798 | Msa0012200:CDS |
| AGCTCTACTCCATCTTCATA+TGG | 0.474255 | 1_1:-18348616 | None:intergenic |
| CAGCTTCTCGGACGCGCCAC+CGG | 0.476801 | 1_1:+18344667 | Msa0012200:CDS |
| ATTTATTGATTCACATCGCT+TGG | 0.476837 | 1_1:-18346603 | None:intergenic |
| GCGCCGCCGTTTCGCGGACC+AGG | 0.477189 | 1_1:-18344708 | None:intergenic |
| TATTCTCAAGGGAAACGAAC+AGG | 0.479763 | 1_1:+18348729 | Msa0012200:CDS |
| CATGAAGGCAACGGCGGTGG+CGG | 0.483078 | 1_1:+18344625 | Msa0012200:CDS |
| ATCCGTCCTGGTCCGCGAAA+CGG | 0.483903 | 1_1:+18344702 | Msa0012200:CDS |
| TAAGTGATTATTTAAGAAGG+AGG | 0.485043 | 1_1:-18344421 | None:intergenic |
| TGCTATTCTCTATGCTGTTG+CGG | 0.491315 | 1_1:+18347617 | Msa0012200:CDS |
| ATTATCAAAACTGAGCAAAT+CGG | 0.492185 | 1_1:-18348824 | None:intergenic |
| AACAATGAGGAGAAGGATAG+TGG | 0.493619 | 1_1:+18347789 | Msa0012200:CDS |
| TGCCAAAACAACACAGAAGA+TGG | 0.498684 | 1_1:-18347550 | None:intergenic |
| GACGGATGGTCCTCTTCGTC+CGG | 0.501308 | 1_1:-18344686 | None:intergenic |
| CATCATGAAGGCAACGGCGG+TGG | 0.503117 | 1_1:+18344622 | Msa0012200:CDS |
| AAGATGCTCCACGCTTGTAC+TGG | 0.503612 | 1_1:+18346696 | Msa0012200:CDS |
| TCGAAGAACGTCGTGCCGAT+TGG | 0.504046 | 1_1:+18344737 | Msa0012200:CDS |
| GCTCGACATGTCGTGGAACA+TGG | 0.511175 | 1_1:+18344783 | Msa0012200:CDS |
| ATCGGAGGGATTCGCGGAGG+AGG | 0.513459 | 1_1:+18344947 | Msa0012200:CDS |
| GCCGTAATCGGAGGGATTCG+CGG | 0.515119 | 1_1:+18344941 | Msa0012200:CDS |
| TTGTAAGTACAATATTCTCA+AGG | 0.522566 | 1_1:+18348717 | Msa0012200:CDS |
| ATTTAATTAACATTTCAAAA+CGG | 0.523017 | 1_1:-18348997 | None:intergenic |
| GGAAATCATACCGCATCCTC+AGG | 0.524464 | 1_1:-18347879 | None:intergenic |
| GAGATTAATGCGTTGAAAGG+TGG | 0.524923 | 1_1:-18344399 | None:intergenic |
| GAAGCTGAGCGAGGGAAGTA+CGG | 0.525268 | 1_1:-18344651 | None:intergenic |
| ATAGAGAATAGCAATGATGC+AGG | 0.528520 | 1_1:-18347607 | None:intergenic |
| ACGTGAACTCGTCTCAGTCC+AGG | 0.533200 | 1_1:+18345031 | Msa0012200:CDS |
| CCGATCCGCGTTTGGATCGT+CGG | 0.534490 | 1_1:+18344865 | Msa0012200:CDS |
| TTGTACATGTTGTCTTGGTG+TGG | 0.534657 | 1_1:+18344905 | Msa0012200:CDS |
| TAGTGGTGGAGCTGGATCAA+TGG | 0.540698 | 1_1:+18347806 | Msa0012200:CDS |
| GACATGTCGAGCGCTACGAC+TGG | 0.542175 | 1_1:-18344772 | None:intergenic |
| AGTATCACCGCCGTAATCGG+AGG | 0.542558 | 1_1:+18344932 | Msa0012200:CDS |
| TGCCTCTGTCCATATGAAGA+TGG | 0.543393 | 1_1:+18348607 | Msa0012200:CDS |
| ACGAAGAGGACCATCCGTCC+TGG | 0.543673 | 1_1:+18344690 | Msa0012200:CDS |
| AGTTGCCATGTATGCACTGG+TGG | 0.544429 | 1_1:-18347841 | None:intergenic |
| AGCGTTGAAAACTCCCAGTA+AGG | 0.544987 | 1_1:-18348759 | None:intergenic |
| AGAAACCACCAGTGCATACA+TGG | 0.546021 | 1_1:+18347836 | Msa0012200:CDS |
| GCGTTGAAAGGTGGATGCTA+AGG | 0.550106 | 1_1:-18344390 | None:intergenic |
| AATATCAAACAATGAGGAGA+AGG | 0.552713 | 1_1:+18347782 | Msa0012200:CDS |
| AGAATATTGTACTTACAAAG+AGG | 0.557808 | 1_1:-18348712 | None:intergenic |
| CGCCGTTTCGCGGACCAGGA+CGG | 0.558450 | 1_1:-18344704 | None:intergenic |
| TGTAAGTACAATATTCTCAA+GGG | 0.561290 | 1_1:+18348718 | Msa0012200:CDS |
| ACGGTGTGGTGATAACTGAT+AGG | 0.562805 | 1_1:-18344347 | None:intergenic |
| GAGCGGAGAAGCGGTGTTTG+TGG | 0.565856 | 1_1:-18344598 | None:intergenic |
| TTCAGTTGCCATGTATGCAC+TGG | 0.568260 | 1_1:-18347844 | None:intergenic |
| AACAGGTATAACACCTTACT+GGG | 0.571722 | 1_1:+18348746 | Msa0012200:exon |
| GAGGAGATTAATGCGTTGAA+AGG | 0.576462 | 1_1:-18344402 | None:intergenic |
| CGCTCACATCATGAAGGCAA+CGG | 0.578089 | 1_1:+18344616 | Msa0012200:CDS |
| TGCATGAAGAATGGAAATGA+TGG | 0.580086 | 1_1:-18348657 | None:intergenic |
| CGCGTCCGAGAAGCTGAGCG+AGG | 0.580325 | 1_1:-18344660 | None:intergenic |
| CCGACGATCCAAACGCGGAT+CGG | 0.580794 | 1_1:-18344865 | None:intergenic |
| GGACGCGCCACCGGACGAAG+AGG | 0.583915 | 1_1:+18344676 | Msa0012200:CDS |
| TATGCACTGGTGGTTTCTAT+GGG | 0.584259 | 1_1:-18347831 | None:intergenic |
| TCGTAGCGCTCGACATGTCG+TGG | 0.586584 | 1_1:+18344776 | Msa0012200:CDS |
| TGGCTTCGAGTATCCCCAAT+CGG | 0.586699 | 1_1:-18344752 | None:intergenic |
| GTGGAACATGGCGTTCGTTG+TGG | 0.589906 | 1_1:+18344795 | Msa0012200:CDS |
| CTTCTCCGCTCACATCATGA+AGG | 0.590176 | 1_1:+18344610 | Msa0012200:CDS |
| GAAGAACGTCGTGCCGATTG+GGG | 0.594506 | 1_1:+18344739 | Msa0012200:CDS |
| GGATGGTCCTCTTCGTCCGG+TGG | 0.596489 | 1_1:-18344683 | None:intergenic |
| GATGTGAATCAATAAATACT+GGG | 0.596572 | 1_1:+18346609 | Msa0012200:CDS |
| GAATGGAAATGATGGTTGCA+GGG | 0.597135 | 1_1:-18348649 | None:intergenic |
| GTTTCGCGGACCAGGACGGA+TGG | 0.597219 | 1_1:-18344700 | None:intergenic |
| GTATCACCGCCGTAATCGGA+GGG | 0.597390 | 1_1:+18344933 | Msa0012200:CDS |
| AGCGTGGAGCATCTTGCAGA+AGG | 0.597658 | 1_1:-18346688 | None:intergenic |
| CGTCCTGGTCCGCGAAACGG+CGG | 0.602812 | 1_1:+18344705 | Msa0012200:CDS |
| GCGTCCGAGAAGCTGAGCGA+GGG | 0.602931 | 1_1:-18344659 | None:intergenic |
| TCATGATGTGAGCGGAGAAG+CGG | 0.615465 | 1_1:-18344607 | None:intergenic |
| CATGTTCGGATGCTCGTCAA+CGG | 0.617231 | 1_1:-18344842 | None:intergenic |
| CTTTCAAATGACTCTAGCAA+AGG | 0.618057 | 1_1:-18348931 | None:intergenic |
| GGATTCGCGGAGGAGGCAGA+GGG | 0.630882 | 1_1:+18344954 | Msa0012200:CDS |
| AAAAGCCCACCATCCACCAA+AGG | 0.634811 | 1_1:-18346640 | None:intergenic |
| GATGCTGAATTCAGTTCCGA+CGG | 0.635749 | 1_1:+18344982 | Msa0012200:CDS |
| GTCATCACTATCGTTACCGT+CGG | 0.642079 | 1_1:-18344998 | None:intergenic |
| CTCCATCTTCATATGGACAG+AGG | 0.658470 | 1_1:-18348609 | None:intergenic |
| AAAGCTTACCAGTACAAGCG+TGG | 0.660127 | 1_1:-18346704 | None:intergenic |
| AACGATAGTGATGACAGCGA+TGG | 0.663555 | 1_1:+18345006 | Msa0012200:CDS |
| GCGAATCCCTCCGATTACGG+CGG | 0.668033 | 1_1:-18344939 | None:intergenic |
| CGTTGCCTTCATGATGTGAG+CGG | 0.668534 | 1_1:-18344615 | None:intergenic |
| ATTTCGAATATCAAACAATG+AGG | 0.669915 | 1_1:+18347776 | Msa0012200:CDS |
| TAGAGAATAGCAATGATGCA+GGG | 0.670826 | 1_1:-18347606 | None:intergenic |
| AATGAGGAGAAGGATAGTGG+TGG | 0.671940 | 1_1:+18347792 | Msa0012200:CDS |
| CGTAACCGACGATCCAAACG+CGG | 0.684216 | 1_1:-18344870 | None:intergenic |
| ATGTGAATCAATAAATACTG+GGG | 0.688287 | 1_1:+18346610 | Msa0012200:CDS |
| TCACATCATGAAGGCAACGG+CGG | 0.699092 | 1_1:+18344619 | Msa0012200:CDS |
| TAATACTCAGTATAGTAACG+TGG | 0.736927 | 1_1:-18348902 | None:intergenic |
| GTAATCGGAGGGATTCGCGG+AGG | 0.737387 | 1_1:+18344944 | Msa0012200:CDS |
| GGTATCGGCAGTGATGCTTG+CGG | 0.745838 | 1_1:+18344816 | Msa0012200:CDS |
| AATTGTTGTTGAATACGGTG+TGG | 0.749377 | 1_1:-18344361 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAACATATAACAT+AGG | + | chr1_1:18345401-18345420 | Msa0012200:intron | 10.0% |
| !!! | ATATATATATTTGTTGATTT+TGG | + | chr1_1:18346870-18346889 | Msa0012200:intron | 10.0% |
| !!! | TATAAGAAGTTAAATTTTAA+AGG | + | chr1_1:18348210-18348229 | Msa0012200:intron | 10.0% |
| !!! | AAAATAATTGTTGTTGAATA+CGG | - | chr1_1:18344369-18344388 | None:intergenic | 15.0% |
| !! | AAATGCATAATTCAATTAAA+AGG | - | chr1_1:18347022-18347041 | None:intergenic | 15.0% |
| !!! | ATAAAAATTTTCTTGATCAA+AGG | + | chr1_1:18347184-18347203 | Msa0012200:intron | 15.0% |
| !! | ATTTATTTGAGAGATAAAAT+TGG | - | chr1_1:18347345-18347364 | None:intergenic | 15.0% |
| !!! | AATTTTATCTCTCAAATAAA+TGG | + | chr1_1:18347344-18347363 | Msa0012200:intron | 15.0% |
| !! | AAATAAATAGAACAATTAGA+AGG | - | chr1_1:18347694-18347713 | None:intergenic | 15.0% |
| !!! | AAATTTAACTTCTTATAACA+GGG | - | chr1_1:18348207-18348226 | None:intergenic | 15.0% |
| !!! | AAAATTTAACTTCTTATAAC+AGG | - | chr1_1:18348208-18348227 | None:intergenic | 15.0% |
| !!! | CATTATTTGAAACTTTTTTT+TGG | + | chr1_1:18348290-18348309 | Msa0012200:intron | 15.0% |
| !! | GAATAAGTGATTATTTAAGA+AGG | - | chr1_1:18344427-18344446 | None:intergenic | 20.0% |
| !! | AAAATCAAATAAAATTCACC+TGG | - | chr1_1:18345052-18345071 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTTGCATGCTA+GGG | + | chr1_1:18345105-18345124 | Msa0012200:intron | 20.0% |
| !! | AATGCAGAATTAATATCATA+AGG | - | chr1_1:18345168-18345187 | None:intergenic | 20.0% |
| !! | TTTAGACTTTACAATGAATT+TGG | + | chr1_1:18345359-18345378 | Msa0012200:intron | 20.0% |
| !! | TTAGACTTTACAATGAATTT+GGG | + | chr1_1:18345360-18345379 | Msa0012200:intron | 20.0% |
| !! | TAATATATATTACGTAGCTA+TGG | - | chr1_1:18345890-18345909 | None:intergenic | 20.0% |
| !! | TGTGTAATGTAAATATAAGT+TGG | + | chr1_1:18345912-18345931 | Msa0012200:intron | 20.0% |
| !! | TCAGTTCTTGATATAAAAAA+TGG | - | chr1_1:18345967-18345986 | None:intergenic | 20.0% |
| !! | TATGTAGTGTAAAAAATTCA+TGG | - | chr1_1:18346239-18346258 | None:intergenic | 20.0% |
| !!! | AGATTTGTAGATACTTATTT+TGG | + | chr1_1:18346561-18346580 | Msa0012200:intron | 20.0% |
| !!! | TCTAAAACAAACAATTCAAA+AGG | - | chr1_1:18346926-18346945 | None:intergenic | 20.0% |
| !! | ACTTGAAATACAAGTATATA+AGG | - | chr1_1:18347057-18347076 | None:intergenic | 20.0% |
| !! | TATTTATAGATGACCAAAAT+GGG | + | chr1_1:18347389-18347408 | Msa0012200:intron | 20.0% |
| !! | GGTATGAATAAAAAATAGTT+TGG | + | chr1_1:18347644-18347663 | Msa0012200:intron | 20.0% |
| !!! | ATTTCATTTTGAGTGAATAT+AGG | + | chr1_1:18347710-18347729 | Msa0012200:intron | 20.0% |
| !! | GTGACTAAAATATAAAATCA+GGG | - | chr1_1:18347991-18348010 | None:intergenic | 20.0% |
| !! | AGTGACTAAAATATAAAATC+AGG | - | chr1_1:18347992-18348011 | None:intergenic | 20.0% |
| !!! | CACAAATTTCTAAAATATCA+AGG | - | chr1_1:18348114-18348133 | None:intergenic | 20.0% |
| !!! | AATTTGAGTTAAACAAACAA+CGG | + | chr1_1:18348154-18348173 | Msa0012200:intron | 20.0% |
| !! | TTTCAAATAATGCAATCAAT+TGG | - | chr1_1:18348282-18348301 | None:intergenic | 20.0% |
| !! | ATGCATGTTAAAAGAAAAAA+GGG | + | chr1_1:18348371-18348390 | Msa0012200:intron | 20.0% |
| !! | AGTTTCTTCTAAATATTTCT+TGG | + | chr1_1:18348451-18348470 | Msa0012200:intron | 20.0% |
| !!! | ATTTTATTATGCATGAAGAA+TGG | - | chr1_1:18348669-18348688 | None:intergenic | 20.0% |
| !! | ATTCTTCATGCATAATAAAA+TGG | + | chr1_1:18348668-18348687 | Msa0012200:CDS | 20.0% |
| !! | ATTTGAAAGTTATCCAATTA+TGG | + | chr1_1:18348945-18348964 | Msa0012200:three_prime_UTR | 20.0% |
| ! | TAAGTGATTATTTAAGAAGG+AGG | - | chr1_1:18344424-18344443 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTTTTGCATGCT+AGG | + | chr1_1:18345104-18345123 | Msa0012200:intron | 25.0% |
| ! | CAATCAATCTCATTAAAACT+TGG | - | chr1_1:18345311-18345330 | None:intergenic | 25.0% |
| ! | TAGACTTTACAATGAATTTG+GGG | + | chr1_1:18345361-18345380 | Msa0012200:intron | 25.0% |
| ! | AAAGAAAAGTGAACAAAAGT+GGG | + | chr1_1:18345534-18345553 | Msa0012200:intron | 25.0% |
| !!! | TTTGTTTTTAAGGGCATTTT+TGG | + | chr1_1:18345772-18345791 | Msa0012200:intron | 25.0% |
| !! | TTTTGTGCAATTATTCAATG+TGG | + | chr1_1:18346017-18346036 | Msa0012200:intron | 25.0% |
| ! | TCCTGATATTTAAATAAACC+TGG | + | chr1_1:18346151-18346170 | Msa0012200:intron | 25.0% |
| ! | ACCAGGTTTATTTAAATATC+AGG | - | chr1_1:18346155-18346174 | None:intergenic | 25.0% |
| ! | TGATATTTAAATAAACCTGG+TGG | + | chr1_1:18346154-18346173 | Msa0012200:intron | 25.0% |
| ! | GATGTGAATCAATAAATACT+GGG | + | chr1_1:18346609-18346628 | Msa0012200:CDS | 25.0% |
| ! | ATGTGAATCAATAAATACTG+GGG | + | chr1_1:18346610-18346629 | Msa0012200:CDS | 25.0% |
| !!! | AGAATATTTGCTATTTGTAC+CGG | + | chr1_1:18346813-18346832 | Msa0012200:intron | 25.0% |
| !!! | TATATTTGTTGATTTTGGAG+TGG | + | chr1_1:18346875-18346894 | Msa0012200:intron | 25.0% |
| !!! | AATTGTTTGTTTTAGAGAGA+CGG | + | chr1_1:18346930-18346949 | Msa0012200:intron | 25.0% |
| ! | TATCCTCTCTTATAAACAAA+GGG | - | chr1_1:18346970-18346989 | None:intergenic | 25.0% |
| ! | ACGAATTTGAAAAATCATCT+TGG | - | chr1_1:18347132-18347151 | None:intergenic | 25.0% |
| !!! | TCGTAAATTTCAAAAGTACT+AGG | + | chr1_1:18347148-18347167 | Msa0012200:intron | 25.0% |
| !!! | CGTAAATTTCAAAAGTACTA+GGG | + | chr1_1:18347149-18347168 | Msa0012200:intron | 25.0% |
| ! | GTATTTATAGATGACCAAAA+TGG | + | chr1_1:18347388-18347407 | Msa0012200:intron | 25.0% |
| !!! | GTAGTTACTCAATTTTTTCT+AGG | + | chr1_1:18347411-18347430 | Msa0012200:intron | 25.0% |
| !!! | ACTTGTTTTTGAATCTTTAC+AGG | + | chr1_1:18347490-18347509 | Msa0012200:intron | 25.0% |
| !! | GATATTCGAAATCTGTATTT+TGG | - | chr1_1:18347768-18347787 | None:intergenic | 25.0% |
| ! | ATTTCGAATATCAAACAATG+AGG | + | chr1_1:18347776-18347795 | Msa0012200:CDS | 25.0% |
| ! | ACTGAAATAAATTGTGTTTC+AGG | - | chr1_1:18347903-18347922 | None:intergenic | 25.0% |
| ! | AATGGAAATCAATTGTTCAA+TGG | + | chr1_1:18347954-18347973 | Msa0012200:intron | 25.0% |
| ! | TTATAACAGGGATACAAAAA+GGG | - | chr1_1:18348195-18348214 | None:intergenic | 25.0% |
| !!! | TAAATTTTAAAGGCACAAAG+AGG | + | chr1_1:18348220-18348239 | Msa0012200:intron | 25.0% |
| !! | TTCTTTTAGTACTAAAGGAT+GGG | + | chr1_1:18348328-18348347 | Msa0012200:intron | 25.0% |
| ! | GATGCATGTTAAAAGAAAAA+AGG | + | chr1_1:18348370-18348389 | Msa0012200:intron | 25.0% |
| ! | GTCTATTAAGATTATGTTGA+TGG | + | chr1_1:18348419-18348438 | Msa0012200:intron | 25.0% |
| ! | TTCTAAATATTTCTTGGAAG+AGG | + | chr1_1:18348457-18348476 | Msa0012200:intron | 25.0% |
| !!! | AAAATTGTAAGTTGGTTTCT+GGG | - | chr1_1:18348534-18348553 | None:intergenic | 25.0% |
| !! | AAACTCTGAAAATTGTAAGT+TGG | - | chr1_1:18348542-18348561 | None:intergenic | 25.0% |
| ! | AGAATATTGTACTTACAAAG+AGG | - | chr1_1:18348715-18348734 | None:intergenic | 25.0% |
| ! | TTGTAAGTACAATATTCTCA+AGG | + | chr1_1:18348717-18348736 | Msa0012200:CDS | 25.0% |
| ! | TGTAAGTACAATATTCTCAA+GGG | + | chr1_1:18348718-18348737 | Msa0012200:CDS | 25.0% |
| ! | ATTATCAAAACTGAGCAAAT+CGG | - | chr1_1:18348827-18348846 | None:intergenic | 25.0% |
| ! | GATCTATTTAGAGAAGATTT+AGG | + | chr1_1:18348856-18348875 | Msa0012200:three_prime_UTR | 25.0% |
| !! | GTTATCCAATTATGGATTAT+TGG | + | chr1_1:18348953-18348972 | Msa0012200:three_prime_UTR | 25.0% |
| ACACGTAAGTAACATATCTA+TGG | + | chr1_1:18344299-18344318 | Msa0012200:five_prime_UTR | 30.0% | |
| GAAAGAAAAGTGAACAAAAG+TGG | + | chr1_1:18345533-18345552 | Msa0012200:intron | 30.0% | |
| ! | ATTCTAAGGGTTTCAAATGA+AGG | - | chr1_1:18345737-18345756 | None:intergenic | 30.0% |
| TTAAAAACAAACGTTCCAGA+GGG | - | chr1_1:18345763-18345782 | None:intergenic | 30.0% | |
| !!! | TCTGGAACGTTTGTTTTTAA+GGG | + | chr1_1:18345763-18345782 | Msa0012200:intron | 30.0% |
| !!! | TAAGGGCATTTTTGGATTTT+TGG | + | chr1_1:18345780-18345799 | Msa0012200:intron | 30.0% |
| !!! | AAGGGCATTTTTGGATTTTT+GGG | + | chr1_1:18345781-18345800 | Msa0012200:intron | 30.0% |
| ! | GTAAATATAAGTTGGCATTG+AGG | + | chr1_1:18345920-18345939 | Msa0012200:intron | 30.0% |
| TATTTAAATAAACCTGGTGG+AGG | + | chr1_1:18346157-18346176 | Msa0012200:intron | 30.0% | |
| TGCTAATGAAACTACAAGAT+AGG | - | chr1_1:18346325-18346344 | None:intergenic | 30.0% | |
| GTTTCATTAGCATTTGTGTA+TGG | + | chr1_1:18346333-18346352 | Msa0012200:intron | 30.0% | |
| TTAGCATTTGTGTATGGAAT+CGG | + | chr1_1:18346339-18346358 | Msa0012200:intron | 30.0% | |
| TAGCTGTATGTATAGATATG+TGG | + | chr1_1:18346493-18346512 | Msa0012200:intron | 30.0% | |
| TGTATGTATAGATATGTGGT+TGG | + | chr1_1:18346497-18346516 | Msa0012200:intron | 30.0% | |
| GTATGTATAGATATGTGGTT+GGG | + | chr1_1:18346498-18346517 | Msa0012200:intron | 30.0% | |
| !! | ATTTATTGATTCACATCGCT+TGG | - | chr1_1:18346606-18346625 | None:intergenic | 30.0% |
| CGATGTGAATCAATAAATAC+TGG | + | chr1_1:18346608-18346627 | Msa0012200:CDS | 30.0% | |
| !! | TAAACAAAGGGTATTGAAGA+AGG | - | chr1_1:18346958-18346977 | None:intergenic | 30.0% |
| ! | ATACCCTTTGTTTATAAGAG+AGG | + | chr1_1:18346964-18346983 | Msa0012200:intron | 30.0% |
| GTATCCTCTCTTATAAACAA+AGG | - | chr1_1:18346971-18346990 | None:intergenic | 30.0% | |
| TTCTATTCTATTGTGGTAAG+TGG | - | chr1_1:18347109-18347128 | None:intergenic | 30.0% | |
| !! | ATCTTGGTTCTATTCTATTG+TGG | - | chr1_1:18347116-18347135 | None:intergenic | 30.0% |
| TATAAATGGACGACCAAAAT+TGG | - | chr1_1:18347210-18347229 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTTAAGGACTGGTT+GGG | - | chr1_1:18347290-18347309 | None:intergenic | 30.0% |
| !!! | TCTTGTTCTTTTTTAAGGAC+TGG | - | chr1_1:18347295-18347314 | None:intergenic | 30.0% |
| !!! | CTCGATCTTGTTCTTTTTTA+AGG | - | chr1_1:18347300-18347319 | None:intergenic | 30.0% |
| ! | AATTGAGTAACTACCCATTT+TGG | - | chr1_1:18347405-18347424 | None:intergenic | 30.0% |
| TTTGTTGCTGTACTAATGAA+AGG | + | chr1_1:18347463-18347482 | Msa0012200:intron | 30.0% | |
| !! | CATTTTGAGTGAATATAGGA+AGG | + | chr1_1:18347714-18347733 | Msa0012200:intron | 30.0% |
| AATATCAAACAATGAGGAGA+AGG | + | chr1_1:18347782-18347801 | Msa0012200:CDS | 30.0% | |
| ! | AATTGATCACTTCTGAGAAA+TGG | + | chr1_1:18347936-18347955 | Msa0012200:intron | 30.0% |
| AATTGTTCAATGGAAATCAG+TGG | + | chr1_1:18347964-18347983 | Msa0012200:intron | 30.0% | |
| CTTATAACAGGGATACAAAA+AGG | - | chr1_1:18348196-18348215 | None:intergenic | 30.0% | |
| ACAAAGAGGTTACAACTTTA+TGG | + | chr1_1:18348234-18348253 | Msa0012200:intron | 30.0% | |
| ! | GTCACTTCTTTTAGTACTAA+AGG | + | chr1_1:18348323-18348342 | Msa0012200:intron | 30.0% |
| ! | CTTCTTTTAGTACTAAAGGA+TGG | + | chr1_1:18348327-18348346 | Msa0012200:intron | 30.0% |
| CTAGCAAATAAACTGATAGT+AGG | + | chr1_1:18348395-18348414 | Msa0012200:intron | 30.0% | |
| !!! | TATTTTTTCTAGAAGAGCTC+AGG | - | chr1_1:18348503-18348522 | None:intergenic | 30.0% |
| !! | GAAAATTGTAAGTTGGTTTC+TGG | - | chr1_1:18348535-18348554 | None:intergenic | 30.0% |
| !!! | TATTTGCTGTTTTGCATTTC+AGG | + | chr1_1:18348573-18348592 | Msa0012200:intron | 30.0% |
| !! | GCTCAGTTTTGATAATTGTT+TGG | + | chr1_1:18348831-18348850 | Msa0012200:three_prime_UTR | 30.0% |
| TAATACTCAGTATAGTAACG+TGG | - | chr1_1:18348905-18348924 | None:intergenic | 30.0% | |
| GAACTCCAATAATCCATAAT+TGG | - | chr1_1:18348961-18348980 | None:intergenic | 30.0% | |
| ! | AATTGTTGTTGAATACGGTG+TGG | - | chr1_1:18344364-18344383 | None:intergenic | 35.0% |
| GTGAAGAGAGTGAAAGAAAA+CGG | - | chr1_1:18344463-18344482 | None:intergenic | 35.0% | |
| ! | GTGTTTTGTACATGTTGTCT+TGG | + | chr1_1:18344900-18344919 | Msa0012200:CDS | 35.0% |
| ! | TCACGTTTTTCTTTCACTCT+CGG | - | chr1_1:18345454-18345473 | None:intergenic | 35.0% |
| AAAAACGTGAGAAGAGAAAG+TGG | + | chr1_1:18345464-18345483 | Msa0012200:intron | 35.0% | |
| AAAACGTGAGAAGAGAAAGT+GGG | + | chr1_1:18345465-18345484 | Msa0012200:intron | 35.0% | |
| TAAAAACAAACGTTCCAGAG+GGG | - | chr1_1:18345762-18345781 | None:intergenic | 35.0% | |
| CTTAAAAACAAACGTTCCAG+AGG | - | chr1_1:18345764-18345783 | None:intergenic | 35.0% | |
| !!! | CTCTGGAACGTTTGTTTTTA+AGG | + | chr1_1:18345762-18345781 | Msa0012200:intron | 35.0% |
| !! | AGCTTGTCTTGTTTCTTTGA+GGG | + | chr1_1:18345862-18345881 | Msa0012200:intron | 35.0% |
| ATATAGTGCAAGTGATGCAA+TGG | - | chr1_1:18346102-18346121 | None:intergenic | 35.0% | |
| GTGTAAAAAATTCATGGTGC+AGG | - | chr1_1:18346233-18346252 | None:intergenic | 35.0% | |
| ACATCAGATAATGTGAGGAA+TGG | - | chr1_1:18346378-18346397 | None:intergenic | 35.0% | |
| ATTAACATGCATTAGCAGCA+AGG | - | chr1_1:18346467-18346486 | None:intergenic | 35.0% | |
| ! | ATAGACACATGTGCATTTTC+AGG | - | chr1_1:18346850-18346869 | None:intergenic | 35.0% |
| CCACTAGTTGTTAAATATGC+AGG | - | chr1_1:18346993-18347012 | None:intergenic | 35.0% | |
| CCTGCATATTTAACAACTAG+TGG | + | chr1_1:18346990-18347009 | Msa0012200:intron | 35.0% | |
| ! | TCTTGATCAAAGGCCAATTT+TGG | + | chr1_1:18347194-18347213 | Msa0012200:intron | 35.0% |
| CCAAAAGATGCGGTTATAAA+TGG | - | chr1_1:18347224-18347243 | None:intergenic | 35.0% | |
| ! | CCATTTATAACCGCATCTTT+TGG | + | chr1_1:18347221-18347240 | Msa0012200:intron | 35.0% |
| CATACAGATGCGGTTATAAA+TGG | - | chr1_1:18347251-18347270 | None:intergenic | 35.0% | |
| CATTTATAACCGCATCTGTA+TGG | + | chr1_1:18347249-18347268 | Msa0012200:intron | 35.0% | |
| !!! | GTTCTTTTTTAAGGACTGGT+TGG | - | chr1_1:18347291-18347310 | None:intergenic | 35.0% |
| ACAAGATCGAGTCCATTAAT+TGG | + | chr1_1:18347309-18347328 | Msa0012200:intron | 35.0% | |
| AGTCCATTAATTGGTACCAA+AGG | + | chr1_1:18347318-18347337 | Msa0012200:intron | 35.0% | |
| GAGAGATAAAATTGGTCCTT+TGG | - | chr1_1:18347337-18347356 | None:intergenic | 35.0% | |
| ! | GTTTTTGAATCTTTACAGGC+TGG | + | chr1_1:18347494-18347513 | Msa0012200:intron | 35.0% |
| TAGAGAATAGCAATGATGCA+GGG | - | chr1_1:18347609-18347628 | None:intergenic | 35.0% | |
| ATAGAGAATAGCAATGATGC+AGG | - | chr1_1:18347610-18347629 | None:intergenic | 35.0% | |
| ! | TGAACGAATACTTTTACCTG+AGG | + | chr1_1:18347863-18347882 | Msa0012200:CDS | 35.0% |
| ! | AATACTTTTACCTGAGGATG+CGG | + | chr1_1:18347869-18347888 | Msa0012200:CDS | 35.0% |
| ! | TGTTTTCATGCATGTGAATC+TGG | + | chr1_1:18348033-18348052 | Msa0012200:intron | 35.0% |
| TTGAGTTAAACAAACAACGG+CGG | + | chr1_1:18348157-18348176 | Msa0012200:intron | 35.0% | |
| ! | TTTTAGTACTAAAGGATGGG+AGG | + | chr1_1:18348331-18348350 | Msa0012200:intron | 35.0% |
| AGGAACTTTGTTGAAGATGT+AGG | + | chr1_1:18348477-18348496 | Msa0012200:intron | 35.0% | |
| TGCATGAAGAATGGAAATGA+TGG | - | chr1_1:18348660-18348679 | None:intergenic | 35.0% | |
| AACAGGTATAACACCTTACT+GGG | + | chr1_1:18348746-18348765 | Msa0012200:exon | 35.0% | |
| CTTTCAAATGACTCTAGCAA+AGG | - | chr1_1:18348934-18348953 | None:intergenic | 35.0% | |
| GAGATTAATGCGTTGAAAGG+TGG | - | chr1_1:18344402-18344421 | None:intergenic | 40.0% | |
| GAGGAGATTAATGCGTTGAA+AGG | - | chr1_1:18344405-18344424 | None:intergenic | 40.0% | |
| TTGTACATGTTGTCTTGGTG+TGG | + | chr1_1:18344905-18344924 | Msa0012200:CDS | 40.0% | |
| CGGGCTTTCTTACACAATAA+TGG | - | chr1_1:18345434-18345453 | None:intergenic | 40.0% | |
| ! | CACGTTTTTCTTTCACTCTC+GGG | - | chr1_1:18345453-18345472 | None:intergenic | 40.0% |
| AGAAAGTGGGCAAAAGAGAT+AGG | + | chr1_1:18345478-18345497 | Msa0012200:intron | 40.0% | |
| GATTGGAAGACAATTAGTGC+TGG | + | chr1_1:18345589-18345608 | Msa0012200:intron | 40.0% | |
| GTTCACTAATGTAGGAAGCT+GGG | + | chr1_1:18345647-18345666 | Msa0012200:intron | 40.0% | |
| AATGAAGGATGTTCGCTGTT+TGG | - | chr1_1:18345722-18345741 | None:intergenic | 40.0% | |
| AAAAACAAACGTTCCAGAGG+GGG | - | chr1_1:18345761-18345780 | None:intergenic | 40.0% | |
| ! | ACGTGCTTTGAGTGCTATTA+CGG | + | chr1_1:18345829-18345848 | Msa0012200:intron | 40.0% |
| !! | GAGCTTGTCTTGTTTCTTTG+AGG | + | chr1_1:18345861-18345880 | Msa0012200:intron | 40.0% |
| !! | GCTTGTCTTGTTTCTTTGAG+GGG | + | chr1_1:18345863-18345882 | Msa0012200:intron | 40.0% |
| !! | CTTGTCTTGTTTCTTTGAGG+GGG | + | chr1_1:18345864-18345883 | Msa0012200:intron | 40.0% |
| ACTGCAAAAATGAATCCTGC+TGG | + | chr1_1:18346041-18346060 | Msa0012200:intron | 40.0% | |
| ATTTCACAACTGCTAGGTCT+TGG | - | chr1_1:18346075-18346094 | None:intergenic | 40.0% | |
| GGCAAAATTTCACAACTGCT+AGG | - | chr1_1:18346081-18346100 | None:intergenic | 40.0% | |
| ATACTGGGGTTTCATTCCTT+TGG | + | chr1_1:18346624-18346643 | Msa0012200:CDS | 40.0% | |
| AAATGGACGACCAAAAGATG+CGG | - | chr1_1:18347234-18347253 | None:intergenic | 40.0% | |
| GGTCCTTTGGTACCAATTAA+TGG | - | chr1_1:18347324-18347343 | None:intergenic | 40.0% | |
| !!! | TGCCATCTTCTGTGTTGTTT+TGG | + | chr1_1:18347548-18347567 | Msa0012200:CDS | 40.0% |
| TGCCAAAACAACACAGAAGA+TGG | - | chr1_1:18347553-18347572 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTGGCATGCTTGAT+CGG | + | chr1_1:18347561-18347580 | Msa0012200:CDS | 40.0% |
| TGCTATTCTCTATGCTGTTG+CGG | + | chr1_1:18347617-18347636 | Msa0012200:CDS | 40.0% | |
| AACAATGAGGAGAAGGATAG+TGG | + | chr1_1:18347789-18347808 | Msa0012200:CDS | 40.0% | |
| ! | TATGCACTGGTGGTTTCTAT+GGG | - | chr1_1:18347834-18347853 | None:intergenic | 40.0% |
| CATGTGAATCTGGTCATCAA+AGG | + | chr1_1:18348043-18348062 | Msa0012200:intron | 40.0% | |
| TGAGTTAAACAAACAACGGC+GGG | + | chr1_1:18348158-18348177 | Msa0012200:intron | 40.0% | |
| CAGGGATACAAAAAGGGAAT+AGG | - | chr1_1:18348189-18348208 | None:intergenic | 40.0% | |
| AGCTCTACTCCATCTTCATA+TGG | - | chr1_1:18348619-18348638 | None:intergenic | 40.0% | |
| GAATGGAAATGATGGTTGCA+GGG | - | chr1_1:18348652-18348671 | None:intergenic | 40.0% | |
| AGAATGGAAATGATGGTTGC+AGG | - | chr1_1:18348653-18348672 | None:intergenic | 40.0% | |
| TATTCTCAAGGGAAACGAAC+AGG | + | chr1_1:18348729-18348748 | Msa0012200:CDS | 40.0% | |
| GAACAGGTATAACACCTTAC+TGG | + | chr1_1:18348745-18348764 | Msa0012200:exon | 40.0% | |
| ACGGTGTGGTGATAACTGAT+AGG | - | chr1_1:18344350-18344369 | None:intergenic | 45.0% | |
| TTGAGTATCACCGCCGTAAT+CGG | + | chr1_1:18344929-18344948 | Msa0012200:CDS | 45.0% | |
| GATGCTGAATTCAGTTCCGA+CGG | + | chr1_1:18344982-18345001 | Msa0012200:CDS | 45.0% | |
| GTCATCACTATCGTTACCGT+CGG | - | chr1_1:18345001-18345020 | None:intergenic | 45.0% | |
| AACGATAGTGATGACAGCGA+TGG | + | chr1_1:18345006-18345025 | Msa0012200:CDS | 45.0% | |
| TGGGCAAAAGAGATAGGTAG+AGG | + | chr1_1:18345484-18345503 | Msa0012200:intron | 45.0% | |
| GGGCAAAAGAGATAGGTAGA+GGG | + | chr1_1:18345485-18345504 | Msa0012200:intron | 45.0% | |
| AACAAAAGTGGGCAGAAGAG+TGG | + | chr1_1:18345545-18345564 | Msa0012200:intron | 45.0% | |
| ! | TGTCTTCCAATCGCCACTTT+GGG | - | chr1_1:18345581-18345600 | None:intergenic | 45.0% |
| TTGTCTTCCAATCGCCACTT+TGG | - | chr1_1:18345582-18345601 | None:intergenic | 45.0% | |
| GGTTCACTAATGTAGGAAGC+TGG | + | chr1_1:18345646-18345665 | Msa0012200:intron | 45.0% | |
| AAGCTGGGCTGTGTGAATTA+TGG | + | chr1_1:18345662-18345681 | Msa0012200:intron | 45.0% | |
| TTCCAGAGGGGGAATTCTAA+GGG | - | chr1_1:18345750-18345769 | None:intergenic | 45.0% | |
| ACTCAAAGCACGTGACAAGA+GGG | - | chr1_1:18345822-18345841 | None:intergenic | 45.0% | |
| ! | TTGAGTGCTATTACGGCTAG+TGG | + | chr1_1:18345836-18345855 | Msa0012200:intron | 45.0% |
| GCAGAGCTTCTCAATGATAG+GGG | - | chr1_1:18346191-18346210 | None:intergenic | 45.0% | |
| GGCAGAGCTTCTCAATGATA+GGG | - | chr1_1:18346192-18346211 | None:intergenic | 45.0% | |
| CTATCATTGAGAAGCTCTGC+CGG | + | chr1_1:18346191-18346210 | Msa0012200:intron | 45.0% | |
| TGTTACACGCAGCTACATCA+AGG | + | chr1_1:18346270-18346289 | Msa0012200:intron | 45.0% | |
| GTTACACGCAGCTACATCAA+GGG | + | chr1_1:18346271-18346290 | Msa0012200:intron | 45.0% | |
| TTACACGCAGCTACATCAAG+GGG | + | chr1_1:18346272-18346291 | Msa0012200:intron | 45.0% | |
| AAAACGTCCGATGATAGTCG+TGG | - | chr1_1:18346302-18346321 | None:intergenic | 45.0% | |
| TGCGGACATCAGATAATGTG+AGG | - | chr1_1:18346383-18346402 | None:intergenic | 45.0% | |
| TTATCTGATGTCCGCAGAAC+AGG | + | chr1_1:18346387-18346406 | Msa0012200:intron | 45.0% | |
| ! | CTGTGGCACACTTTGGAAAA+AGG | + | chr1_1:18346411-18346430 | Msa0012200:intron | 45.0% |
| GCAGCAAGGTCATTTAGAAG+AGG | - | chr1_1:18346453-18346472 | None:intergenic | 45.0% | |
| GGTTTCATTCCTTTGGTGGA+TGG | + | chr1_1:18346631-18346650 | Msa0012200:CDS | 45.0% | |
| ! | TTCATTCCTTTGGTGGATGG+TGG | + | chr1_1:18346634-18346653 | Msa0012200:CDS | 45.0% |
| ! | TCATTCCTTTGGTGGATGGT+GGG | + | chr1_1:18346635-18346654 | Msa0012200:CDS | 45.0% |
| AAAGCTTACCAGTACAAGCG+TGG | - | chr1_1:18346707-18346726 | None:intergenic | 45.0% | |
| GCGCTTGAGTCTACATAAGT+AGG | - | chr1_1:18346787-18346806 | None:intergenic | 45.0% | |
| ! | GAGAGCATATGTGACACTGA+GGG | + | chr1_1:18347366-18347385 | Msa0012200:intron | 45.0% |
| !! | CAGGCTGGCTGTTATCTTTT+TGG | + | chr1_1:18347509-18347528 | Msa0012200:intron | 45.0% |
| GCTATTCTCTATGCTGTTGC+GGG | + | chr1_1:18347618-18347637 | Msa0012200:CDS | 45.0% | |
| ! | AATGAGGAGAAGGATAGTGG+TGG | + | chr1_1:18347792-18347811 | Msa0012200:CDS | 45.0% |
| ! | GTATGCACTGGTGGTTTCTA+TGG | - | chr1_1:18347835-18347854 | None:intergenic | 45.0% |
| AGAAACCACCAGTGCATACA+TGG | + | chr1_1:18347836-18347855 | Msa0012200:CDS | 45.0% | |
| TTCAGTTGCCATGTATGCAC+TGG | - | chr1_1:18347847-18347866 | None:intergenic | 45.0% | |
| TGCCTCTGTCCATATGAAGA+TGG | + | chr1_1:18348607-18348626 | Msa0012200:CDS | 45.0% | |
| CTCCATCTTCATATGGACAG+AGG | - | chr1_1:18348612-18348631 | None:intergenic | 45.0% | |
| ! | AGCGTTGAAAACTCCCAGTA+AGG | - | chr1_1:18348762-18348781 | None:intergenic | 45.0% |
| GCGTTGAAAGGTGGATGCTA+AGG | - | chr1_1:18344393-18344412 | None:intergenic | 50.0% | |
| TCATGATGTGAGCGGAGAAG+CGG | - | chr1_1:18344610-18344629 | None:intergenic | 50.0% | |
| CTTCTCCGCTCACATCATGA+AGG | + | chr1_1:18344610-18344629 | Msa0012200:CDS | 50.0% | |
| CGTTGCCTTCATGATGTGAG+CGG | - | chr1_1:18344618-18344637 | None:intergenic | 50.0% | |
| CGCTCACATCATGAAGGCAA+CGG | + | chr1_1:18344616-18344635 | Msa0012200:CDS | 50.0% | |
| TCACATCATGAAGGCAACGG+CGG | + | chr1_1:18344619-18344638 | Msa0012200:CDS | 50.0% | |
| TGGCTTCGAGTATCCCCAAT+CGG | - | chr1_1:18344755-18344774 | None:intergenic | 50.0% | |
| CATGGCGTTCGTTGTGGTAT+CGG | + | chr1_1:18344801-18344820 | Msa0012200:CDS | 50.0% | |
| CATGTTCGGATGCTCGTCAA+CGG | - | chr1_1:18344845-18344864 | None:intergenic | 50.0% | |
| TAGGTAGAGGGAGACTAGAG+AGG | + | chr1_1:18345497-18345516 | Msa0012200:intron | 50.0% | |
| AGGTAGAGGGAGACTAGAGA+GGG | + | chr1_1:18345498-18345517 | Msa0012200:intron | 50.0% | |
| AAAAGTGGGCAGAAGAGTGG+AGG | + | chr1_1:18345548-18345567 | Msa0012200:intron | 50.0% | |
| TGGAGGAAAGAAGCCCAAAG+TGG | + | chr1_1:18345565-18345584 | Msa0012200:intron | 50.0% | |
| AAGAAGCCCAAAGTGGCGAT+TGG | + | chr1_1:18345572-18345591 | Msa0012200:intron | 50.0% | |
| GAAAAGTCGCTCAGCAAGCT+TGG | + | chr1_1:18345614-18345633 | Msa0012200:intron | 50.0% | |
| ! | GGAGGCTGGTTCACTAATGT+AGG | + | chr1_1:18345639-18345658 | Msa0012200:intron | 50.0% |
| CTGCGTGTGACTACTGTGTA+TGG | + | chr1_1:18345688-18345707 | Msa0012200:intron | 50.0% | |
| AACCCTTAGAATTCCCCCTC+TGG | + | chr1_1:18345745-18345764 | Msa0012200:intron | 50.0% | |
| GTTCCAGAGGGGGAATTCTA+AGG | - | chr1_1:18345751-18345770 | None:intergenic | 50.0% | |
| CACTCAAAGCACGTGACAAG+AGG | - | chr1_1:18345823-18345842 | None:intergenic | 50.0% | |
| ! | AGTGCTATTACGGCTAGTGG+TGG | + | chr1_1:18345839-18345858 | Msa0012200:intron | 50.0% |
| !! | GTCTTGGTATCGATTCCAGC+AGG | - | chr1_1:18346059-18346078 | None:intergenic | 50.0% |
| CGGCAGAGCTTCTCAATGAT+AGG | - | chr1_1:18346193-18346212 | None:intergenic | 50.0% | |
| GGGCTATCCACGACTATCAT+CGG | + | chr1_1:18346292-18346311 | Msa0012200:intron | 50.0% | |
| GTGAGGAATGGCACTATCAG+TGG | - | chr1_1:18346366-18346385 | None:intergenic | 50.0% | |
| AACAGGACTGTGGCACACTT+TGG | + | chr1_1:18346404-18346423 | Msa0012200:intron | 50.0% | |
| CTGGGGTTTCATTCCTTTGG+TGG | + | chr1_1:18346627-18346646 | Msa0012200:CDS | 50.0% | |
| AAAAGCCCACCATCCACCAA+AGG | - | chr1_1:18346643-18346662 | None:intergenic | 50.0% | |
| !!! | GTGGATGGTGGGCTTTTACT+GGG | + | chr1_1:18346646-18346665 | Msa0012200:CDS | 50.0% |
| ! | GGCTTTTACTGGGTTGTCTC+TGG | + | chr1_1:18346656-18346675 | Msa0012200:CDS | 50.0% |
| AAGATGCTCCACGCTTGTAC+TGG | + | chr1_1:18346696-18346715 | Msa0012200:CDS | 50.0% | |
| ! | GCTATTTGTACCGGTGCTGA+AGG | + | chr1_1:18346822-18346841 | Msa0012200:intron | 50.0% |
| !! | TTTTCAGGCACCTTCAGCAC+CGG | - | chr1_1:18346835-18346854 | None:intergenic | 50.0% |
| AACCGCATCTGTATGGTCCT+TGG | + | chr1_1:18347256-18347275 | Msa0012200:intron | 50.0% | |
| CTCCAAGGACCATACAGATG+CGG | - | chr1_1:18347261-18347280 | None:intergenic | 50.0% | |
| ! | GGAGAGCATATGTGACACTG+AGG | + | chr1_1:18347365-18347384 | Msa0012200:intron | 50.0% |
| ! | TAGTGGTGGAGCTGGATCAA+TGG | + | chr1_1:18347806-18347825 | Msa0012200:CDS | 50.0% |
| AGTTGCCATGTATGCACTGG+TGG | - | chr1_1:18347844-18347863 | None:intergenic | 50.0% | |
| GGAAATCATACCGCATCCTC+AGG | - | chr1_1:18347882-18347901 | None:intergenic | 50.0% | |
| GATGGTTGCAGGGAAGAGTA+TGG | - | chr1_1:18348642-18348661 | None:intergenic | 50.0% | |
| GAAGCTGAGCGAGGGAAGTA+CGG | - | chr1_1:18344654-18344673 | None:intergenic | 55.0% | |
| ACTTCCCTCGCTCAGCTTCT+CGG | + | chr1_1:18344655-18344674 | Msa0012200:CDS | 55.0% | |
| ! | TCGAAGAACGTCGTGCCGAT+TGG | + | chr1_1:18344737-18344756 | Msa0012200:CDS | 55.0% |
| !! | CGAAGAACGTCGTGCCGATT+GGG | + | chr1_1:18344738-18344757 | Msa0012200:CDS | 55.0% |
| !! | GAAGAACGTCGTGCCGATTG+GGG | + | chr1_1:18344739-18344758 | Msa0012200:CDS | 55.0% |
| GCTCGACATGTCGTGGAACA+TGG | + | chr1_1:18344783-18344802 | Msa0012200:CDS | 55.0% | |
| GTGGAACATGGCGTTCGTTG+TGG | + | chr1_1:18344795-18344814 | Msa0012200:CDS | 55.0% | |
| !! | GGTATCGGCAGTGATGCTTG+CGG | + | chr1_1:18344816-18344835 | Msa0012200:CDS | 55.0% |
| CAAACGCGGATCGGCATGTT+CGG | - | chr1_1:18344859-18344878 | None:intergenic | 55.0% | |
| CGTAACCGACGATCCAAACG+CGG | - | chr1_1:18344873-18344892 | None:intergenic | 55.0% | |
| AGTATCACCGCCGTAATCGG+AGG | + | chr1_1:18344932-18344951 | Msa0012200:CDS | 55.0% | |
| GTATCACCGCCGTAATCGGA+GGG | + | chr1_1:18344933-18344952 | Msa0012200:CDS | 55.0% | |
| TCCGCGAATCCCTCCGATTA+CGG | - | chr1_1:18344945-18344964 | None:intergenic | 55.0% | |
| ACGTGAACTCGTCTCAGTCC+AGG | + | chr1_1:18345031-18345050 | Msa0012200:CDS | 55.0% | |
| AGTCGCTCAGCAAGCTTGGT+CGG | + | chr1_1:18345618-18345637 | Msa0012200:intron | 55.0% | |
| AGGCGTGCAGCTGTAATCAC+CGG | - | chr1_1:18346213-18346232 | None:intergenic | 55.0% | |
| ATGTCCGCAGAACAGGACTG+TGG | + | chr1_1:18346394-18346413 | Msa0012200:intron | 55.0% | |
| TGTGCCACAGTCCTGTTCTG+CGG | - | chr1_1:18346401-18346420 | None:intergenic | 55.0% | |
| !!! | GGTGGATGGTGGGCTTTTAC+TGG | + | chr1_1:18346645-18346664 | Msa0012200:CDS | 55.0% |
| ! | AGCGTGGAGCATCTTGCAGA+AGG | - | chr1_1:18346691-18346710 | None:intergenic | 55.0% |
| ! | CTGGTTGGGTTGTCACTCCA+AGG | - | chr1_1:18347276-18347295 | None:intergenic | 55.0% |
| TCTCTATGCTGTTGCGGGAC+AGG | + | chr1_1:18347623-18347642 | Msa0012200:CDS | 55.0% | |
| ! | GAGAAGGATAGTGGTGGAGC+TGG | + | chr1_1:18347798-18347817 | Msa0012200:CDS | 55.0% |
| GAGCGGAGAAGCGGTGTTTG+TGG | - | chr1_1:18344601-18344620 | None:intergenic | 60.0% | |
| CATCATGAAGGCAACGGCGG+TGG | + | chr1_1:18344622-18344641 | Msa0012200:CDS | 60.0% | |
| GACGGATGGTCCTCTTCGTC+CGG | - | chr1_1:18344689-18344708 | None:intergenic | 60.0% | |
| ACGAAGAGGACCATCCGTCC+TGG | + | chr1_1:18344690-18344709 | Msa0012200:CDS | 60.0% | |
| ATCCGTCCTGGTCCGCGAAA+CGG | + | chr1_1:18344702-18344721 | Msa0012200:CDS | 60.0% | |
| GACATGTCGAGCGCTACGAC+TGG | - | chr1_1:18344775-18344794 | None:intergenic | 60.0% | |
| TCGTAGCGCTCGACATGTCG+TGG | + | chr1_1:18344776-18344795 | Msa0012200:CDS | 60.0% | |
| CGAACATGCCGATCCGCGTT+TGG | + | chr1_1:18344857-18344876 | Msa0012200:CDS | 60.0% | |
| CCGACGATCCAAACGCGGAT+CGG | - | chr1_1:18344868-18344887 | None:intergenic | 60.0% | |
| CCGATCCGCGTTTGGATCGT+CGG | + | chr1_1:18344865-18344884 | Msa0012200:CDS | 60.0% | |
| GCGAATCCCTCCGATTACGG+CGG | - | chr1_1:18344942-18344961 | None:intergenic | 60.0% | |
| GCCGTAATCGGAGGGATTCG+CGG | + | chr1_1:18344941-18344960 | Msa0012200:CDS | 60.0% | |
| GTAATCGGAGGGATTCGCGG+AGG | + | chr1_1:18344944-18344963 | Msa0012200:CDS | 60.0% | |
| CATGAAGGCAACGGCGGTGG+CGG | + | chr1_1:18344625-18344644 | Msa0012200:CDS | 65.0% | |
| GCGTCCGAGAAGCTGAGCGA+GGG | - | chr1_1:18344662-18344681 | None:intergenic | 65.0% | |
| GGATGGTCCTCTTCGTCCGG+TGG | - | chr1_1:18344686-18344705 | None:intergenic | 65.0% | |
| GTTTCGCGGACCAGGACGGA+TGG | - | chr1_1:18344703-18344722 | None:intergenic | 65.0% | |
| ATCGGAGGGATTCGCGGAGG+AGG | + | chr1_1:18344947-18344966 | Msa0012200:CDS | 65.0% | |
| GGATTCGCGGAGGAGGCAGA+GGG | + | chr1_1:18344954-18344973 | Msa0012200:CDS | 65.0% | |
| CGCTCAGCAAGCTTGGTCGG+AGG | + | chr1_1:18345621-18345640 | Msa0012200:intron | 65.0% | |
| CAGCAAGCTTGGTCGGAGGC+TGG | + | chr1_1:18345625-18345644 | Msa0012200:intron | 65.0% | |
| GGGGCAGTCTTTCCTCCACC+AGG | - | chr1_1:18346172-18346191 | None:intergenic | 65.0% | |
| CGCGTCCGAGAAGCTGAGCG+AGG | - | chr1_1:18344663-18344682 | None:intergenic | 70.0% | |
| CAGCTTCTCGGACGCGCCAC+CGG | + | chr1_1:18344667-18344686 | Msa0012200:CDS | 70.0% | |
| CGCCGTTTCGCGGACCAGGA+CGG | - | chr1_1:18344707-18344726 | None:intergenic | 70.0% | |
| CGTCCTGGTCCGCGAAACGG+CGG | + | chr1_1:18344705-18344724 | Msa0012200:CDS | 70.0% | |
| GTTCACGCGCCGCCGTTTCG+CGG | - | chr1_1:18344717-18344736 | None:intergenic | 70.0% | |
| GGGATTCGCGGAGGAGGCAG+AGG | + | chr1_1:18344953-18344972 | Msa0012200:CDS | 70.0% | |
| GGACGCGCCACCGGACGAAG+AGG | + | chr1_1:18344676-18344695 | Msa0012200:CDS | 75.0% | |
| ! | GCGCCGCCGTTTCGCGGACC+AGG | - | chr1_1:18344711-18344730 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18344298 | 18349015 | 18344298 | ID=Msa0012200;Name=Msa0012200 |
| chr1_1 | mRNA | 18344298 | 18349015 | 18344298 | ID=Msa0012200-mRNA-1;Parent=Msa0012200;Name=Msa0012200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=273|1|1|1|1|1|5|259|351 |
| chr1_1 | exon | 18344298 | 18345052 | 18344298 | ID=Msa0012200-mRNA-1:exon:6713;Parent=Msa0012200-mRNA-1 |
| chr1_1 | exon | 18346598 | 18346717 | 18346598 | ID=Msa0012200-mRNA-1:exon:6714;Parent=Msa0012200-mRNA-1 |
| chr1_1 | exon | 18347512 | 18347644 | 18347512 | ID=Msa0012200-mRNA-1:exon:6715;Parent=Msa0012200-mRNA-1 |
| chr1_1 | exon | 18347732 | 18347890 | 18347732 | ID=Msa0012200-mRNA-1:exon:6716;Parent=Msa0012200-mRNA-1 |
| chr1_1 | exon | 18348595 | 18349015 | 18348595 | ID=Msa0012200-mRNA-1:exon:6717;Parent=Msa0012200-mRNA-1 |
| chr1_1 | five_prime_UTR | 18344298 | 18344570 | 18344298 | ID=Msa0012200-mRNA-1:five_prime_utr;Parent=Msa0012200-mRNA-1 |
| chr1_1 | CDS | 18344571 | 18345052 | 18344571 | ID=Msa0012200-mRNA-1:cds;Parent=Msa0012200-mRNA-1 |
| chr1_1 | CDS | 18346598 | 18346717 | 18346598 | ID=Msa0012200-mRNA-1:cds;Parent=Msa0012200-mRNA-1 |
| chr1_1 | CDS | 18347512 | 18347644 | 18347512 | ID=Msa0012200-mRNA-1:cds;Parent=Msa0012200-mRNA-1 |
| chr1_1 | CDS | 18347732 | 18347890 | 18347732 | ID=Msa0012200-mRNA-1:cds;Parent=Msa0012200-mRNA-1 |
| chr1_1 | CDS | 18348595 | 18348756 | 18348595 | ID=Msa0012200-mRNA-1:cds;Parent=Msa0012200-mRNA-1 |
| chr1_1 | three_prime_UTR | 18348757 | 18349015 | 18348757 | ID=Msa0012200-mRNA-1:three_prime_utr;Parent=Msa0012200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
