AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743630 MtrunA17_Chr5g0445571 97.278 551 12 1 1 551 1 548 0.0 1122
Msa0743630 MtrunA17_Chr3g0101151 60.145 552 186 10 1 548 1 522 0.0 634
Msa0743630 MtrunA17_Chr3g0090551 35.063 559 235 23 1 479 1 511 1.53e-62 218
Msa0743630 MtrunA17_Chr5g0396381 34.447 389 187 13 114 479 181 524 1.21e-46 173
Msa0743630 MtrunA17_Chr4g0020571 51.974 152 66 2 335 479 321 472 7.22e-38 148
Msa0743630 MtrunA17_Chr4g0020571 29.258 229 121 6 1 208 1 209 2.84e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743630 AT2G05160.2 42.531 569 258 16 1 544 1 525 5.20e-132 395
Msa0743630 AT2G05160.1 42.531 569 258 16 1 544 1 525 5.20e-132 395
Msa0743630 AT2G05160.3 46.960 477 211 12 1 466 1 446 7.86e-130 388
Msa0743630 AT3G52980.1 44.096 415 160 11 1 395 1 363 5.40e-103 315
Msa0743630 AT3G51950.1 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0743630 AT3G51950.3 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0743630 AT3G51950.2 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0743630 AT3G51950.4 32.124 579 255 20 1 546 1 474 4.85e-59 205
Msa0743630 AT3G21100.2 33.075 517 262 20 1 479 1 471 6.94e-53 190
Msa0743630 AT3G21100.1 33.075 517 262 20 1 479 1 471 6.94e-53 190
Msa0743630 AT3G21100.4 33.012 518 262 20 1 479 1 472 2.23e-52 188
Msa0743630 AT3G21100.3 33.012 518 262 20 1 479 1 472 2.23e-52 188
Msa0743630 AT5G12440.4 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.11 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.12 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.7 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.1 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.9 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.2 36.943 314 143 13 187 479 231 510 5.29e-42 160
Msa0743630 AT5G12440.3 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0743630 AT5G12440.10 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0743630 AT5G12440.8 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0743630 AT5G12440.5 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0743630 AT5G12440.6 36.943 314 143 13 187 479 262 541 1.21e-41 159
Msa0743630 AT3G63450.6 51.656 151 57 3 329 479 39 173 6.46e-35 133
Msa0743630 AT1G51520.1 54.545 110 50 0 316 425 245 354 3.66e-34 134
Msa0743630 AT3G63450.2 53.103 145 52 3 335 479 153 281 5.68e-34 133
Msa0743630 AT3G63450.2 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0743630 AT3G63450.1 53.103 145 52 3 335 479 153 281 5.68e-34 133
Msa0743630 AT3G63450.1 56.452 62 27 0 1 62 1 62 1.04e-13 73.6
Msa0743630 AT1G51520.2 54.545 110 50 0 316 425 245 354 7.19e-34 135
Msa0743630 AT3G63450.3 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0743630 AT3G63450.3 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0743630 AT3G63450.4 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0743630 AT3G63450.4 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0743630 AT3G63450.5 53.103 145 54 4 335 479 153 283 1.04e-33 132
Msa0743630 AT3G63450.5 56.452 62 27 0 1 62 1 62 1.05e-13 73.6
Msa0743630 AT3G63450.7 53.103 145 54 4 335 479 153 283 1.40e-33 132
Msa0743630 AT3G63450.7 56.452 62 27 0 1 62 1 62 1.18e-13 73.2
Msa0743630 AT1G51530.2 36.496 137 71 4 348 479 185 310 4.78e-12 68.6

Find 140 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCCATTTCACCTCATTT+TGG 0.145853 5_1:-64113425 Msa0743630:CDS
TGAAACTGTGAGAATGATTT+TGG 0.186946 5_1:-64115747 Msa0743630:CDS
CATCGGTGAAGTCGTCTTTA+AGG 0.237792 5_1:-64116950 Msa0743630:CDS
AAAGAGAGAGAAACAGAAAA+AGG 0.247509 5_1:-64118095 Msa0743630:five_prime_UTR
GATGTTTCTGCTGTCAATTT+TGG 0.256613 5_1:-64116613 Msa0743630:CDS
AAAATCATTCTCACAGTTTC+AGG 0.261214 5_1:+64115749 None:intergenic
TTCAAGTTCCATCTTCCTAT+TGG 0.269145 5_1:-64116804 Msa0743630:CDS
TGCAGATCATTTCAATTTCC+AGG 0.277618 5_1:-64113279 Msa0743630:intron
ACATAATACAGTTCTTCTTT+TGG 0.290842 5_1:-64112590 Msa0743630:three_prime_UTR
GAAAATGCTAGAAAGATTAT+TGG 0.297193 5_1:-64117039 Msa0743630:CDS
GTGTGCTTGTGAAACCTTAC+AGG 0.303127 5_1:-64115691 Msa0743630:CDS
TCCAATGGAAAATGATAAAT+AGG 0.307495 5_1:-64112698 Msa0743630:exon
CACCAGTTCCAGTTGCAAAA+AGG 0.309894 5_1:+64112477 None:intergenic
CTATGGTTCCCATAACTTCT+TGG 0.316770 5_1:+64113539 None:intergenic
ACAAACGCAATTGCTGAGTT+TGG 0.320917 5_1:-64116704 Msa0743630:CDS
CGGACAACATGCAGTGGTTC+TGG 0.321883 5_1:-64116080 Msa0743630:CDS
TCAAGTTCCATCTTCCTATT+GGG 0.324176 5_1:-64116803 Msa0743630:CDS
AAGAAAGAGTTTGTTGCCTT+TGG 0.325097 5_1:+64112618 None:intergenic
TAATTCATTCCCGTAAATTC+AGG 0.326064 5_1:+64116754 None:intergenic
ATACTATGATAAATATAAAA+AGG 0.328732 5_1:-64116305 Msa0743630:CDS
CAAAACTGATCTTCAAATAA+TGG 0.329252 5_1:-64116926 Msa0743630:CDS
CCTTGTTGAGGGTTGACATT+AGG 0.334473 5_1:+64116871 None:intergenic
CAATGCAAATCCTGAATTTA+CGG 0.340099 5_1:-64116764 Msa0743630:CDS
TGCCAGCAGAAAAGAATGTT+TGG 0.350390 5_1:-64115791 Msa0743630:CDS
CATTATTTGAAGATCAGTTT+TGG 0.350768 5_1:+64116927 None:intergenic
AAACCCAAAATGAGGTGAAA+TGG 0.352315 5_1:+64113421 None:intergenic
GGAATCAGTGTCAGTATTCT+TGG 0.353353 5_1:+64113220 None:intergenic
ATCTCTAAGTAGACAGTTGA+TGG 0.353788 5_1:-64113516 Msa0743630:CDS
GCTGAGTTTGGAGAATCATT+TGG 0.355136 5_1:-64116692 Msa0743630:CDS
CAGAACAATGCTTGAAGAAC+AGG 0.358987 5_1:+64118046 None:intergenic
AGAAATATGGCTGAAAGGTT+TGG 0.362866 5_1:-64112390 Msa0743630:three_prime_UTR
ACGGAGATAATGCCGGAAAA+TGG 0.364430 5_1:+64116842 None:intergenic
TTGGGTATGTTGAAGATGTT+AGG 0.367518 5_1:-64115820 Msa0743630:CDS
AACCTTTCAGAATGTGGTTA+TGG 0.370195 5_1:-64112290 Msa0743630:three_prime_UTR
ACCTTTGTCTTCTCCCTGTA+AGG 0.370558 5_1:+64115677 None:intergenic
AAAAGTTTACTATAGAAATA+TGG 0.373829 5_1:-64112446 Msa0743630:three_prime_UTR
CTAGAAAGAAAGCTGCTCAT+AGG 0.388511 5_1:+64112247 None:intergenic
TTATTCAACGCATGATTTAG+AGG 0.390101 5_1:+64113248 None:intergenic
TTGACATTAGGTGGCGGAAT+TGG 0.398675 5_1:+64116883 None:intergenic
AAATTCAGGATTTGCATTGC+TGG 0.403668 5_1:+64116768 None:intergenic
TTGGTGGAAAAGCTACAAAA+AGG 0.409932 5_1:-64116594 Msa0743630:CDS
TATGCAGTTCCAAGAAGTTA+TGG 0.410433 5_1:-64113548 Msa0743630:intron
AACAGCAAGACCTCGAGTTC+CGG 0.412720 5_1:+64116657 None:intergenic
AATGCAAATCCTGAATTTAC+GGG 0.416071 5_1:-64116763 Msa0743630:CDS
CTGATTCCTCTGGAGGGAAT+AGG 0.424239 5_1:-64113205 Msa0743630:intron
GCCAGCAGAAAAGAATGTTT+GGG 0.424611 5_1:-64115790 Msa0743630:CDS
AGCCAGCGACATGGTAAGTC+TGG 0.430698 5_1:-64116253 Msa0743630:CDS
TTTGGTTTCTAGAACATCCT+TGG 0.430976 5_1:-64112372 Msa0743630:three_prime_UTR
AGACAATGGCGAACAAGAAA+TGG 0.433416 5_1:-64117001 Msa0743630:CDS
GGAAATGCAAATGGACTGTC+GGG 0.437019 5_1:+64112718 None:intergenic
ATAGTATTCGGCTAATTGAT+AGG 0.438290 5_1:-64116198 Msa0743630:intron
ATCTGTCATTATTTCAGTAA+AGG 0.443297 5_1:-64116535 Msa0743630:CDS
TGCTCCAAAATACATTCAAA+AGG 0.443413 5_1:-64116050 Msa0743630:CDS
AACCCAAAATGAGGTGAAAT+GGG 0.452356 5_1:+64113422 None:intergenic
AATATTCAGCAAATATATAC+AGG 0.458344 5_1:-64112526 Msa0743630:three_prime_UTR
ACTGTCTACTTAGAGATCTA+TGG 0.458496 5_1:+64113522 None:intergenic
ATGCAGTTCCAAGAAGTTAT+GGG 0.460814 5_1:-64113547 Msa0743630:intron
TTGGTTTCTAGAACATCCTT+GGG 0.463267 5_1:-64112371 Msa0743630:three_prime_UTR
GGTAGATTGTGGATCCCAAT+AGG 0.466096 5_1:+64116789 None:intergenic
TCGCGCGACTCAATAGTATT+CGG 0.471471 5_1:-64116210 Msa0743630:CDS
TAGAAAGAAAGCTGCTCATA+GGG 0.476422 5_1:+64112248 None:intergenic
TCAGTGAAAGTGCTGTCAGC+TGG 0.477338 5_1:+64115977 None:intergenic
CAGTCCATTTGCATTTCCAA+TGG 0.489547 5_1:-64112713 Msa0743630:CDS
TTAGTTTCAGAAACAAATAC+AGG 0.489736 5_1:-64112668 Msa0743630:three_prime_UTR
AAATATATACAGGCTGAAGA+AGG 0.495810 5_1:-64112516 Msa0743630:three_prime_UTR
GATTTAGAGGTTCCGCAGCC+TGG 0.497491 5_1:+64113261 None:intergenic
AGGTGGCGGAATTGGCATCA+TGG 0.499716 5_1:+64116891 None:intergenic
TAATACTAGCAATGAGGATC+CGG 0.502530 5_1:-64116428 Msa0743630:CDS
CGAACAAGAAATGGCTAGGT+TGG 0.502766 5_1:-64116992 Msa0743630:CDS
CACAATTTACTCAACTAGCT+TGG 0.503729 5_1:-64112565 Msa0743630:three_prime_UTR
ATTTACGGGAATGAATTACA+TGG 0.507052 5_1:-64116749 Msa0743630:CDS
GACAGTTTCTCTTATATGCA+TGG 0.510255 5_1:-64116460 Msa0743630:CDS
AATGGCTTAAACCTTGTTGA+GGG 0.515579 5_1:+64116860 None:intergenic
ACTATAGAAATATGGCTGAA+AGG 0.519836 5_1:-64112395 Msa0743630:three_prime_UTR
CATTTGGATCATGTGAATAC+CGG 0.523621 5_1:-64116676 Msa0743630:CDS
GCTGTTAATGATTACAACAA+TGG 0.523781 5_1:-64116640 Msa0743630:CDS
TATAGAAATATGGCTGAAGA+AGG 0.525069 5_1:-64112436 Msa0743630:three_prime_UTR
CAGGAGGTACCATGATAGAA+TGG 0.527118 5_1:-64113809 Msa0743630:CDS
CAGAGTGCTCCATTCTATCA+TGG 0.527589 5_1:+64113800 None:intergenic
TGTTGAGGGTTGACATTAGG+TGG 0.528211 5_1:+64116874 None:intergenic
TCATTTCAATTTCCAGGCTG+CGG 0.529484 5_1:-64113273 Msa0743630:CDS
AATACTGACACTGATTCCTC+TGG 0.530154 5_1:-64113215 Msa0743630:CDS
GGAAATCCTCATTATGTTCG+TGG 0.530432 5_1:-64115719 Msa0743630:CDS
TTGGACAACCTTTCAGAATG+TGG 0.530767 5_1:-64112296 Msa0743630:three_prime_UTR
AAATGAGGTGAAATGGGAAA+AGG 0.531747 5_1:+64113428 None:intergenic
GTCAATTGCTTCGCTGCCGA+TGG 0.532551 5_1:-64116329 Msa0743630:CDS
GATTCAAACTTTATAAGTAG+AGG 0.533870 5_1:+64118223 None:intergenic
GCTCCAAAATACATTCAAAA+GGG 0.534969 5_1:-64116049 Msa0743630:CDS
AGTAAAGGTTACTGTAGGCA+TGG 0.535811 5_1:-64116520 Msa0743630:CDS
TGGAAATGCAAATGGACTGT+CGG 0.541995 5_1:+64112717 None:intergenic
ACTTCACCGATGATGTGGTC+AGG 0.542534 5_1:+64116961 None:intergenic
GAGGATCCGGTGATTTCACC+AGG 0.545221 5_1:-64116415 Msa0743630:CDS
TGACAGCACTTTCACTGAAG+AGG 0.547716 5_1:-64115972 Msa0743630:CDS
AAATGGCTTAAACCTTGTTG+AGG 0.548876 5_1:+64116859 None:intergenic
ATTTCAGTAAAGGTTACTGT+AGG 0.554494 5_1:-64116525 Msa0743630:CDS
TGAAATGGGAAAAGGTCGTC+GGG 0.556222 5_1:+64113436 None:intergenic
TGTTAGCAAGATAAGAGCTA+TGG 0.556939 5_1:-64117115 Msa0743630:exon
TCTTGTCCTGACCACATCAT+CGG 0.557055 5_1:-64116967 Msa0743630:CDS
TGTGGATCCCAATAGGAAGA+TGG 0.559950 5_1:+64116796 None:intergenic
ATCCATAACCACATTCTGAA+AGG 0.561674 5_1:+64112288 None:intergenic
AGCCAGACTTACCATGTCGC+TGG 0.562095 5_1:+64116251 None:intergenic
AGAAGACAAAGGTTGTTGAA+AGG 0.562426 5_1:-64115667 Msa0743630:intron
TCGATATTTGCAAAGTGATG+TGG 0.563281 5_1:+64113769 None:intergenic
GGCAGCGAAGCAATTGACAT+TGG 0.563893 5_1:+64116334 None:intergenic
CGAGAGCCACGAACATAATG+AGG 0.570909 5_1:+64115713 None:intergenic
GGAACTCTCAACGCATCCAT+AGG 0.573720 5_1:+64113398 None:intergenic
TGAAAGTTCAGCGGTGAAGA+CGG 0.575317 5_1:+64116823 None:intergenic
TATTTATCATAGTATGCCAT+CGG 0.579740 5_1:+64116313 None:intergenic
TTTGCATTGCTGGTAGATTG+TGG 0.579975 5_1:+64116778 None:intergenic
TCCATAGGAAACCCAAAATG+AGG 0.584131 5_1:+64113413 None:intergenic
GTTAGAACAGTGGAGGCCAA+AGG 0.587413 5_1:-64112634 Msa0743630:three_prime_UTR
ATGGCGAACAAGAAATGGCT+AGG 0.597763 5_1:-64116996 Msa0743630:CDS
AAATAATGACAGATCTTGAG+TGG 0.598237 5_1:+64116544 None:intergenic
GTGAAATGGGAAAAGGTCGT+CGG 0.599339 5_1:+64113435 None:intergenic
AATATATACAGGCTGAAGAA+GGG 0.600066 5_1:-64112515 Msa0743630:three_prime_UTR
TGGTTGATTTACAGGCCTCA+CGG 0.603591 5_1:-64116100 Msa0743630:intron
TCTATCTGAGCTAGTGACCC+TGG 0.610875 5_1:+64116397 None:intergenic
AGACGACTTCACCGATGATG+TGG 0.612232 5_1:+64116956 None:intergenic
AGTGACCCTGGTGAAATCAC+CGG 0.612483 5_1:+64116409 None:intergenic
ACTGACACTGATTCCTCTGG+AGG 0.617261 5_1:-64113212 Msa0743630:CDS
CCTAATGTCAACCCTCAACA+AGG 0.617801 5_1:-64116871 Msa0743630:CDS
CATGTGAATACCGGAACTCG+AGG 0.623739 5_1:-64116667 Msa0743630:CDS
GGTGAAGACGGAGATAATGC+CGG 0.634024 5_1:+64116835 None:intergenic
TGAGGGTTGACATTAGGTGG+CGG 0.637168 5_1:+64116877 None:intergenic
TGTATACCTATTCCCTCCAG+AGG 0.656241 5_1:+64113199 None:intergenic
TAATGATAATACTAGCAATG+AGG 0.661063 5_1:-64116434 Msa0743630:CDS
GCCTCACGGACAACATGCAG+TGG 0.661109 5_1:-64116086 Msa0743630:CDS
GTACAGAGTTAGAACAGTGG+AGG 0.665498 5_1:-64112641 Msa0743630:three_prime_UTR
CTGACACTGATTCCTCTGGA+GGG 0.669158 5_1:-64113211 Msa0743630:CDS
ACCACTGCATGTTGTCCGTG+AGG 0.679392 5_1:+64116085 None:intergenic
TGTGCTTGTGAAACCTTACA+GGG 0.679592 5_1:-64115690 Msa0743630:CDS
ACCTTACAGGGAGAAGACAA+AGG 0.680060 5_1:-64115678 Msa0743630:CDS
GATGGAACTTGAAAGTTCAG+CGG 0.682151 5_1:+64116814 None:intergenic
TTAACTGAGAGCCAGCGACA+TGG 0.684743 5_1:-64116262 Msa0743630:CDS
AAAGGTTACTGTAGGCATGG+AGG 0.699149 5_1:-64116517 Msa0743630:CDS
GAAGTACAGAGTTAGAACAG+TGG 0.699941 5_1:-64112644 Msa0743630:three_prime_UTR
ATATAAGAGAAACTGTCGTG+AGG 0.723379 5_1:+64116466 None:intergenic
GATGCGTTGAGAGTTCCAGA+TGG 0.726483 5_1:-64113392 Msa0743630:intron
GAAATGCAAATGGACTGTCG+GGG 0.728060 5_1:+64112719 None:intergenic
AGGATCCGGTGATTTCACCA+GGG 0.749562 5_1:-64116414 Msa0743630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTTGTTTTATTT+TGG - chr5_1:64112459-64112478 Msa0743630:three_prime_UTR 10.0%
!! ATACTATGATAAATATAAAA+AGG - chr5_1:64114095-64114114 Msa0743630:intron 10.0%
!!! AAGTAAATTATTACATTTTT+TGG - chr5_1:64114468-64114487 Msa0743630:intron 10.0%
!!! TTATTTTTCAAAAAATGTTT+AGG - chr5_1:64115079-64115098 Msa0743630:intron 10.0%
!! TCTTTAATAATTATTAACTT+CGG - chr5_1:64116559-64116578 Msa0743630:CDS 10.0%
!! ATTTCAAGATTAAAATCTAA+AGG + chr5_1:64112675-64112694 None:intergenic 15.0%
!!! GTTTTTTTTTTTGTTTTGAA+CGG - chr5_1:64112720-64112739 Msa0743630:CDS 15.0%
!! TTAGTGAATAAAAAAACAAT+AGG + chr5_1:64113233-64113252 None:intergenic 15.0%
!! ATTATACGTATTAGTAAATT+TGG - chr5_1:64114528-64114547 Msa0743630:intron 15.0%
!!! TCTTTTCTTTTTGATAATAA+AGG - chr5_1:64114769-64114788 Msa0743630:intron 15.0%
!!! ATATTATAGTTCCTTATTTA+TGG - chr5_1:64115341-64115360 Msa0743630:intron 15.0%
!! ATAGTAATTAAGAGAATAAA+TGG + chr5_1:64115804-64115823 None:intergenic 15.0%
!! ATAAATTATACAAGTTTGAA+GGG - chr5_1:64116378-64116397 Msa0743630:CDS 15.0%
!!! AATTGTTTTAGTACTAAAAT+GGG + chr5_1:64117251-64117270 None:intergenic 15.0%
!!! AAATTGTTTTAGTACTAAAA+TGG + chr5_1:64117252-64117271 None:intergenic 15.0%
!! AAAAGTTTACTATAGAAATA+TGG - chr5_1:64117954-64117973 Msa0743630:intron 15.0%
!!! GTTTTTTAACTATAGAAATA+TGG - chr5_1:64117997-64118016 Msa0743630:intron 15.0%
!!! AAATAACTAGCTATATTTTT+TGG - chr5_1:64118085-64118104 Msa0743630:five_prime_UTR 15.0%
!!! GTGTTAAGTGTATTTATTTT+CGG + chr5_1:64112216-64112235 None:intergenic 20.0%
!!! ATTTTGGATTGTTTTGTAAA+AGG - chr5_1:64112475-64112494 Msa0743630:three_prime_UTR 20.0%
!!! TTTTGGATTGTTTTGTAAAA+GGG - chr5_1:64112476-64112495 Msa0743630:three_prime_UTR 20.0%
!!! TTAGTTCTTTAACATTTTGT+TGG - chr5_1:64112540-64112559 Msa0743630:three_prime_UTR 20.0%
!!! TAGTTCTTTAACATTTTGTT+GGG - chr5_1:64112541-64112560 Msa0743630:three_prime_UTR 20.0%
!! TTGAATTGTTATCATGAAAA+TGG - chr5_1:64112600-64112619 Msa0743630:three_prime_UTR 20.0%
!! TGAATTGTTATCATGAAAAT+GGG - chr5_1:64112601-64112620 Msa0743630:three_prime_UTR 20.0%
!!! TATTTTCTATTGTTGGTTTT+TGG - chr5_1:64112854-64112873 Msa0743630:intron 20.0%
!!! AGAAAGTTATTTTCTATTGT+TGG - chr5_1:64112898-64112917 Msa0743630:intron 20.0%
!!! TATTTTCTATTGTTGGTTTT+TGG - chr5_1:64112854-64112873 Msa0743630:intron 20.0%
!!! TTATTTTAACTTGTTTCTGT+TGG - chr5_1:64113162-64113181 Msa0743630:intron 20.0%
!! ATTATCAAAAAGAAAAGACA+AGG + chr5_1:64114767-64114786 None:intergenic 20.0%
!! ATTTATGCTTCTGATTTAAA+TGG - chr5_1:64114874-64114893 Msa0743630:intron 20.0%
!! TTTATGCTTCTGATTTAAAT+GGG - chr5_1:64114875-64114894 Msa0743630:intron 20.0%
!!! TTTTCATTGATTATTGACAA+AGG - chr5_1:64115237-64115256 Msa0743630:intron 20.0%
!!! TTTCATTGATTATTGACAAA+GGG - chr5_1:64115238-64115257 Msa0743630:intron 20.0%
!! AACTTTACAAGCATAAATTA+TGG + chr5_1:64115501-64115520 None:intergenic 20.0%
!! AATTTATGCTTGTAAAGTTA+TGG - chr5_1:64115502-64115521 Msa0743630:intron 20.0%
!!! TATAGTTTTTAAATGTTGTG+AGG - chr5_1:64115821-64115840 Msa0743630:CDS 20.0%
!! AAAAAAAACAGAGAAAACAT+AGG + chr5_1:64116003-64116022 None:intergenic 20.0%
!! CATAAATTATACAAGTTTGA+AGG - chr5_1:64116377-64116396 Msa0743630:CDS 20.0%
!!! ATCATAACTTTGCATATTTT+AGG + chr5_1:64116443-64116462 None:intergenic 20.0%
!!! CACTGACAAATATAATATTT+TGG - chr5_1:64116518-64116537 Msa0743630:CDS 20.0%
!! TTAAAGAAAACATTCATCAT+AGG + chr5_1:64116546-64116565 None:intergenic 20.0%
!! TAAAAAACAAAAAACCTTAC+TGG - chr5_1:64116764-64116783 Msa0743630:CDS 20.0%
!! AATATGATTTATGTCAAGAA+AGG + chr5_1:64117573-64117592 None:intergenic 20.0%
!! AATATTCAGCAAATATATAC+AGG - chr5_1:64117874-64117893 Msa0743630:intron 20.0%
! GATTCAAACTTTATAAGTAG+AGG + chr5_1:64112180-64112199 None:intergenic 25.0%
!! TTTTTCATCTTTCTGTTTCA+TGG - chr5_1:64112380-64112399 Msa0743630:three_prime_UTR 25.0%
!! TTTTCATCTTTCTGTTTCAT+GGG - chr5_1:64112381-64112400 Msa0743630:three_prime_UTR 25.0%
!! TATAAACATCTTTGTTTGCA+TGG - chr5_1:64112635-64112654 Msa0743630:three_prime_UTR 25.0%
! GAAATGTTAATGATGATCTA+AGG - chr5_1:64112826-64112845 Msa0743630:intron 25.0%
!!! GGTTAGTTATTTTCTATTGT+TGG - chr5_1:64112847-64112866 Msa0743630:intron 25.0%
! ATTTAATGCATAGCAGAAAA+GGG + chr5_1:64112988-64113007 None:intergenic 25.0%
! AATTTAATGCATAGCAGAAA+AGG + chr5_1:64112989-64113008 None:intergenic 25.0%
! AGTTATGACAGAGAAAATTT+AGG - chr5_1:64113021-64113040 Msa0743630:intron 25.0%
! CAAAAATAACACAAATTCTG+AGG + chr5_1:64113205-64113224 None:intergenic 25.0%
!!! ATAATCTTTCTAGCATTTTC+AGG + chr5_1:64113361-64113380 None:intergenic 25.0%
! GAAAATGCTAGAAAGATTAT+TGG - chr5_1:64113361-64113380 Msa0743630:intron 25.0%
!! TATCTTCTTTTACAAGACAA+TGG - chr5_1:64113385-64113404 Msa0743630:intron 25.0%
!! CATTATTTGAAGATCAGTTT+TGG + chr5_1:64113476-64113495 None:intergenic 25.0%
! CAAAACTGATCTTCAAATAA+TGG - chr5_1:64113474-64113493 Msa0743630:CDS 25.0%
! ATCTGTCATTATTTCAGTAA+AGG - chr5_1:64113865-64113884 Msa0743630:intron 25.0%
! TAATGATAATACTAGCAATG+AGG - chr5_1:64113966-64113985 Msa0743630:intron 25.0%
! TATTTATCATAGTATGCCAT+CGG + chr5_1:64114090-64114109 None:intergenic 25.0%
!!! CTCTAGTTTGAAATTTGTTA+TGG - chr5_1:64114280-64114299 Msa0743630:intron 25.0%
!!! ATTTGTTATGGTTGATTTAC+AGG - chr5_1:64114292-64114311 Msa0743630:intron 25.0%
! AAACAAGTGTCAATAAGTAT+AGG + chr5_1:64114498-64114517 None:intergenic 25.0%
! ATGTGTACAACTTCAAAAAA+TGG + chr5_1:64115002-64115021 None:intergenic 25.0%
! TCGTCTAAAAAAATGTTTGA+AGG - chr5_1:64115161-64115180 Msa0743630:intron 25.0%
! CGTCTAAAAAAATGTTTGAA+GGG - chr5_1:64115162-64115181 Msa0743630:intron 25.0%
!! TTCATTGATTATTGACAAAG+GGG - chr5_1:64115239-64115258 Msa0743630:intron 25.0%
!! CATTTTTCATAGTCATGTTT+AGG - chr5_1:64115288-64115307 Msa0743630:intron 25.0%
!!! ATGTTTAGGTTTTATGATGT+TGG - chr5_1:64115302-64115321 Msa0743630:intron 25.0%
! TAAAACAGTGACCATAAATA+AGG + chr5_1:64115355-64115374 None:intergenic 25.0%
! ACTCCAAAATATAAGAAAAC+TGG - chr5_1:64115683-64115702 Msa0743630:CDS 25.0%
! CTCCAAAATATAAGAAAACT+GGG - chr5_1:64115684-64115703 Msa0743630:CDS 25.0%
!! TTCCCAGTTTTCTTATATTT+TGG + chr5_1:64115689-64115708 None:intergenic 25.0%
!!! GATATTTTTGACCGAAAATA+TGG - chr5_1:64115722-64115741 Msa0743630:CDS 25.0%
!! AAGTAACCTTTCCATATTTT+CGG + chr5_1:64115736-64115755 None:intergenic 25.0%
! TTAAGAGAATAAATGGAGAA+AGG + chr5_1:64115797-64115816 None:intergenic 25.0%
! TGAGGTGTATAAAAATGATT+TGG - chr5_1:64115839-64115858 Msa0743630:intron 25.0%
! GAGGTGTATAAAAATGATTT+GGG - chr5_1:64115840-64115859 Msa0743630:intron 25.0%
! TATTTCGAGAACTATAGTAA+TGG - chr5_1:64116167-64116186 Msa0743630:intron 25.0%
! AGTGTACATTGTATGTAATA+AGG - chr5_1:64116243-64116262 Msa0743630:CDS 25.0%
! GTGTACATTGTATGTAATAA+GGG - chr5_1:64116244-64116263 Msa0743630:CDS 25.0%
! TGGTTTATTTAACATCACAA+AGG - chr5_1:64116411-64116430 Msa0743630:CDS 25.0%
! TTTATAGAATCTAATCACAG+AGG + chr5_1:64116748-64116767 None:intergenic 25.0%
! TTCAATTAGCATAACAATGA+AGG + chr5_1:64117090-64117109 None:intergenic 25.0%
!! GTACTAAAACAATTTTCCTT+TGG - chr5_1:64117257-64117276 Msa0743630:intron 25.0%
!! TATCAAATTTGCCTTTTGAT+AGG + chr5_1:64117309-64117328 None:intergenic 25.0%
! CAGAACAATAGATTCAAATT+CGG + chr5_1:64117405-64117424 None:intergenic 25.0%
!!! ATATGGTATTGGTTCAAAAT+TGG - chr5_1:64117427-64117446 Msa0743630:intron 25.0%
!!! TATGGTATTGGTTCAAAATT+GGG - chr5_1:64117428-64117447 Msa0743630:intron 25.0%
! TCCAATGGAAAATGATAAAT+AGG - chr5_1:64117702-64117721 Msa0743630:intron 25.0%
!! TCCTATTTATCATTTTCCAT+TGG + chr5_1:64117706-64117725 None:intergenic 25.0%
! TTAGTTTCAGAAACAAATAC+AGG - chr5_1:64117732-64117751 Msa0743630:intron 25.0%
!! ACATAATACAGTTCTTCTTT+TGG - chr5_1:64117810-64117829 Msa0743630:intron 25.0%
!!! TTTGTTGTTGAAGTTTTTAG+TGG - chr5_1:64118058-64118077 Msa0743630:five_prime_UTR 25.0%
!!! TTATTGACTCTAAAAAGTTG+AGG + chr5_1:64118235-64118254 None:intergenic 25.0%
AAAGAGAGAGAAACAGAAAA+AGG - chr5_1:64112305-64112324 Msa0743630:three_prime_UTR 30.0%
AAGAGAGAGAAACAGAAAAA+GGG - chr5_1:64112306-64112325 Msa0743630:three_prime_UTR 30.0%
TTTGCAACATGCATACAAAT+TGG + chr5_1:64112517-64112536 None:intergenic 30.0%
! CTTGAAATGAATGATAGTGT+TGG - chr5_1:64112687-64112706 Msa0743630:exon 30.0%
TTTCTCTGTCATAACTCAAA+AGG + chr5_1:64113017-64113036 None:intergenic 30.0%
ATGTTTCTTTCTGTGTCTTT+AGG - chr5_1:64113095-64113114 Msa0743630:intron 30.0%
CAATGCAAATCCTGAATTTA+CGG - chr5_1:64113636-64113655 Msa0743630:intron 30.0%
AATGCAAATCCTGAATTTAC+GGG - chr5_1:64113637-64113656 Msa0743630:intron 30.0%
TAATTCATTCCCGTAAATTC+AGG + chr5_1:64113649-64113668 None:intergenic 30.0%
ATTTACGGGAATGAATTACA+TGG - chr5_1:64113651-64113670 Msa0743630:intron 30.0%
GCTGTTAATGATTACAACAA+TGG - chr5_1:64113760-64113779 Msa0743630:CDS 30.0%
AAATAATGACAGATCTTGAG+TGG + chr5_1:64113859-64113878 None:intergenic 30.0%
ATTTCAGTAAAGGTTACTGT+AGG - chr5_1:64113875-64113894 Msa0743630:intron 30.0%
! GGTAACTGTAGATATTTTCA+TGG - chr5_1:64113904-64113923 Msa0743630:intron 30.0%
ATAGTATTCGGCTAATTGAT+AGG - chr5_1:64114202-64114221 Msa0743630:intron 30.0%
TGCTCCAAAATACATTCAAA+AGG - chr5_1:64114350-64114369 Msa0743630:intron 30.0%
GCTCCAAAATACATTCAAAA+GGG - chr5_1:64114351-64114370 Msa0743630:intron 30.0%
! TCTCCCTTTTGAATGTATTT+TGG + chr5_1:64114357-64114376 None:intergenic 30.0%
AAAATCATTCTCACAGTTTC+AGG + chr5_1:64114654-64114673 None:intergenic 30.0%
! TGAAACTGTGAGAATGATTT+TGG - chr5_1:64114653-64114672 Msa0743630:intron 30.0%
TATGATGAATGCTTATTCCT+CGG - chr5_1:64114939-64114958 Msa0743630:intron 30.0%
! TTTGAAGTTGTACACATAGT+AGG - chr5_1:64115005-64115024 Msa0743630:intron 30.0%
AGTAGGCACATATCTATATA+TGG - chr5_1:64115022-64115041 Msa0743630:intron 30.0%
!!! ACTAAGTTTTAGCTCTCTTA+CGG + chr5_1:64115110-64115129 None:intergenic 30.0%
TAAATTATGGACAATGGAAC+AGG + chr5_1:64115488-64115507 None:intergenic 30.0%
CAAGCATAAATTATGGACAA+TGG + chr5_1:64115494-64115513 None:intergenic 30.0%
CTTGTAAAGTTATGGTATCT+TGG - chr5_1:64115510-64115529 Msa0743630:intron 30.0%
! CAGTTTTGCATTGAAAAGTA+AGG - chr5_1:64115565-64115584 Msa0743630:intron 30.0%
! TAACTTGGTCGTATTTCTAT+AGG + chr5_1:64115615-64115634 None:intergenic 30.0%
AAATACGACCAAGTTATAGA+AGG - chr5_1:64115619-64115638 Msa0743630:intron 30.0%
! TTTTGACCGAAAATATGGAA+AGG - chr5_1:64115727-64115746 Msa0743630:CDS 30.0%
TATGGAAAGGTTACTTGTAT+AGG - chr5_1:64115740-64115759 Msa0743630:CDS 30.0%
GTTACTTGTATAGGAGAAAT+AGG - chr5_1:64115749-64115768 Msa0743630:CDS 30.0%
GAATAAATGGAGAAAGGAAA+CGG + chr5_1:64115791-64115810 None:intergenic 30.0%
GCAAAAAACAGAACAAACAT+AGG + chr5_1:64115973-64115992 None:intergenic 30.0%
AAATCAATGTAGTCAGGATT+GGG + chr5_1:64116117-64116136 None:intergenic 30.0%
!! AATCCTGACTACATTGATTT+GGG - chr5_1:64116117-64116136 Msa0743630:intron 30.0%
! AACTATAGTAATGGAGCAAA+TGG - chr5_1:64116176-64116195 Msa0743630:intron 30.0%
CAAATGGAGATGATAGAAAA+TGG - chr5_1:64116192-64116211 Msa0743630:intron 30.0%
ATTTATGTTTCCATGAGTAC+TGG - chr5_1:64116317-64116336 Msa0743630:CDS 30.0%
TTATACAAGTTTGAAGGGTA+TGG - chr5_1:64116383-64116402 Msa0743630:CDS 30.0%
TTAACTTCGGTATGTATTTC+AGG - chr5_1:64116572-64116591 Msa0743630:CDS 30.0%
!! CCTAATTGTTTTTCTTCTTC+CGG - chr5_1:64116694-64116713 Msa0743630:CDS 30.0%
AATTGTTCTACATTGTGAAC+CGG + chr5_1:64116716-64116735 None:intergenic 30.0%
! AACAAGCTTTTGAATTGCAA+AGG - chr5_1:64116916-64116935 Msa0743630:CDS 30.0%
CTACATTAAAACATACCATC+TGG + chr5_1:64117026-64117045 None:intergenic 30.0%
TTATTCAACGCATGATTTAG+AGG + chr5_1:64117155-64117174 None:intergenic 30.0%
TTTGTTCACAATTTCACTAG+AGG - chr5_1:64117349-64117368 Msa0743630:intron 30.0%
AATTTCACTAGAGGCTAAAA+TGG - chr5_1:64117358-64117377 Msa0743630:intron 30.0%
GAATCTATTGTTCTGCAATA+TGG - chr5_1:64117410-64117429 Msa0743630:intron 30.0%
ATTGTTCTGCAATATGGTAT+TGG - chr5_1:64117416-64117435 Msa0743630:intron 30.0%
! TTTTCCATTGGAAATGCAAA+TGG + chr5_1:64117694-64117713 None:intergenic 30.0%
AAATATATACAGGCTGAAGA+AGG - chr5_1:64117884-64117903 Msa0743630:intron 30.0%
AATATATACAGGCTGAAGAA+GGG - chr5_1:64117885-64117904 Msa0743630:intron 30.0%
TATAGAAATATGGCTGAAGA+AGG - chr5_1:64117964-64117983 Msa0743630:intron 30.0%
ACTATAGAAATATGGCTGAA+AGG - chr5_1:64117962-64117981 Msa0743630:intron 30.0%
! CTTTGTTTGCATGGTGAAAA+AGG - chr5_1:64112644-64112663 Msa0743630:three_prime_UTR 35.0%
TGAACGGTTGATTATTGTTG+AGG - chr5_1:64112736-64112755 Msa0743630:CDS 35.0%
GAACGGTTGATTATTGTTGA+GGG - chr5_1:64112737-64112756 Msa0743630:CDS 35.0%
TTTCTGTGTCTTTAGGTGAT+TGG - chr5_1:64113102-64113121 Msa0743630:intron 35.0%
TTCTGTGTCTTTAGGTGATT+GGG - chr5_1:64113103-64113122 Msa0743630:intron 35.0%
TGTTAGCAAGATAAGAGCTA+TGG - chr5_1:64113285-64113304 Msa0743630:intron 35.0%
AATGGCTTAAACCTTGTTGA+GGG + chr5_1:64113543-64113562 None:intergenic 35.0%
AAATGGCTTAAACCTTGTTG+AGG + chr5_1:64113544-64113563 None:intergenic 35.0%
!! ACAAGGTTTAAGCCATTTTC+CGG - chr5_1:64113546-64113565 Msa0743630:intron 35.0%
! TTCAAGTTCCATCTTCCTAT+TGG - chr5_1:64113596-64113615 Msa0743630:intron 35.0%
TCAAGTTCCATCTTCCTATT+GGG - chr5_1:64113597-64113616 Msa0743630:intron 35.0%
AAATTCAGGATTTGCATTGC+TGG + chr5_1:64113635-64113654 None:intergenic 35.0%
CATTTGGATCATGTGAATAC+CGG - chr5_1:64113724-64113743 Msa0743630:intron 35.0%
!! GATGTTTCTGCTGTCAATTT+TGG - chr5_1:64113787-64113806 Msa0743630:CDS 35.0%
TTGGTGGAAAAGCTACAAAA+AGG - chr5_1:64113806-64113825 Msa0743630:CDS 35.0%
ATATAAGAGAAACTGTCGTG+AGG + chr5_1:64113937-64113956 None:intergenic 35.0%
GACAGTTTCTCTTATATGCA+TGG - chr5_1:64113940-64113959 Msa0743630:intron 35.0%
TAATACTAGCAATGAGGATC+CGG - chr5_1:64113972-64113991 Msa0743630:intron 35.0%
!!! TTTTTTCTTTGCAGCGCATT+TGG - chr5_1:64114561-64114580 Msa0743630:intron 35.0%
! TTTTTCTTTGCAGCGCATTT+GGG - chr5_1:64114562-64114581 Msa0743630:intron 35.0%
TTGGGTATGTTGAAGATGTT+AGG - chr5_1:64114580-64114599 Msa0743630:intron 35.0%
! TGTGAGAATGATTTTGGACA+AGG - chr5_1:64114659-64114678 Msa0743630:intron 35.0%
! GTGAGAATGATTTTGGACAA+GGG - chr5_1:64114660-64114679 Msa0743630:intron 35.0%
AGAAGACAAAGGTTGTTGAA+AGG - chr5_1:64114733-64114752 Msa0743630:intron 35.0%
TTCAAAAAATGGAGTGCAAG+AGG + chr5_1:64114991-64115010 None:intergenic 35.0%
AGACAGATCCTTCTATAACT+TGG + chr5_1:64115630-64115649 None:intergenic 35.0%
AACTGGGAAGTTAGAATAAG+AGG - chr5_1:64115700-64115719 Msa0743630:CDS 35.0%
ATAGGAGAAATAGGTGAGTT+AGG - chr5_1:64115758-64115777 Msa0743630:CDS 35.0%
AGAGTTGAGAGAAAAAACAG+AGG + chr5_1:64116034-64116053 None:intergenic 35.0%
TGAAAACACGATAGTAGGAT+TGG + chr5_1:64116069-64116088 None:intergenic 35.0%
CAAATCAATGTAGTCAGGAT+TGG + chr5_1:64116118-64116137 None:intergenic 35.0%
! CAATCCTGACTACATTGATT+TGG - chr5_1:64116116-64116135 Msa0743630:intron 35.0%
AGAGGATCTTAACTCGAAAT+AGG - chr5_1:64116215-64116234 Msa0743630:CDS 35.0%
GAGGATCTTAACTCGAAATA+GGG - chr5_1:64116216-64116235 Msa0743630:CDS 35.0%
ATAACTGTATCCAGTACTCA+TGG + chr5_1:64116330-64116349 None:intergenic 35.0%
!! TGAGTACTGGATACAGTTAT+TGG - chr5_1:64116330-64116349 Msa0743630:CDS 35.0%
TCGATATTTGCAAAGTGATG+TGG + chr5_1:64116634-64116653 None:intergenic 35.0%
CCGGAAGAAGAAAAACAATT+AGG + chr5_1:64116697-64116716 None:intergenic 35.0%
TATGCAGTTCCAAGAAGTTA+TGG - chr5_1:64116852-64116871 Msa0743630:CDS 35.0%
ATGCAGTTCCAAGAAGTTAT+GGG - chr5_1:64116853-64116872 Msa0743630:CDS 35.0%
ACTGTCTACTTAGAGATCTA+TGG + chr5_1:64116881-64116900 None:intergenic 35.0%
ATCTCTAAGTAGACAGTTGA+TGG - chr5_1:64116884-64116903 Msa0743630:CDS 35.0%
AAATGAGGTGAAATGGGAAA+AGG + chr5_1:64116975-64116994 None:intergenic 35.0%
! TTTCCCATTTCACCTCATTT+TGG - chr5_1:64116975-64116994 Msa0743630:CDS 35.0%
! TTCCCATTTCACCTCATTTT+GGG - chr5_1:64116976-64116995 Msa0743630:CDS 35.0%
AACCCAAAATGAGGTGAAAT+GGG + chr5_1:64116981-64117000 None:intergenic 35.0%
AAACCCAAAATGAGGTGAAA+TGG + chr5_1:64116982-64117001 None:intergenic 35.0%
TGCAGATCATTTCAATTTCC+AGG - chr5_1:64117121-64117140 Msa0743630:intron 35.0%
! TTGCCTTTTGATAGGAAGAA+CGG + chr5_1:64117301-64117320 None:intergenic 35.0%
TCACTGAAATTAGTTGCAGA+TGG + chr5_1:64117506-64117525 None:intergenic 35.0%
CTGCAACTAATTTCAGTGAA+TGG - chr5_1:64117507-64117526 Msa0743630:intron 35.0%
CAACTAATTTCAGTGAATGG+TGG - chr5_1:64117510-64117529 Msa0743630:intron 35.0%
! GTAATTTTATGCAGCAACGA+AGG - chr5_1:64117649-64117668 Msa0743630:intron 35.0%
!! AAGAAAGAGTTTGTTGCCTT+TGG + chr5_1:64117785-64117804 None:intergenic 35.0%
CACAATTTACTCAACTAGCT+TGG - chr5_1:64117835-64117854 Msa0743630:intron 35.0%
! ACGAATTTCCTTTTTGCAAC+TGG - chr5_1:64117915-64117934 Msa0743630:intron 35.0%
AGAAATATGGCTGAAAGGTT+TGG - chr5_1:64118010-64118029 Msa0743630:intron 35.0%
!! TTTGGTTTCTAGAACATCCT+TGG - chr5_1:64118028-64118047 Msa0743630:five_prime_UTR 35.0%
!! TTGGTTTCTAGAACATCCTT+GGG - chr5_1:64118029-64118048 Msa0743630:five_prime_UTR 35.0%
CAACAACAAAAAAACTCCCA+AGG + chr5_1:64118048-64118067 None:intergenic 35.0%
AACCTTTCAGAATGTGGTTA+TGG - chr5_1:64118110-64118129 Msa0743630:five_prime_UTR 35.0%
ATCCATAACCACATTCTGAA+AGG + chr5_1:64118115-64118134 None:intergenic 35.0%
TAGAAAGAAAGCTGCTCATA+GGG + chr5_1:64118155-64118174 None:intergenic 35.0%
GAGAGAAACAGAAAAAGGGT+TGG - chr5_1:64112310-64112329 Msa0743630:three_prime_UTR 40.0%
CAGAACAATGCTTGAAGAAC+AGG + chr5_1:64112357-64112376 None:intergenic 40.0%
TCTGTGTCTTTAGGTGATTG+GGG - chr5_1:64113104-64113123 Msa0743630:intron 40.0%
AGACAATGGCGAACAAGAAA+TGG - chr5_1:64113399-64113418 Msa0743630:CDS 40.0%
GATGGAACTTGAAAGTTCAG+CGG + chr5_1:64113589-64113608 None:intergenic 40.0%
TTTGCATTGCTGGTAGATTG+TGG + chr5_1:64113625-64113644 None:intergenic 40.0%
ACAAACGCAATTGCTGAGTT+TGG - chr5_1:64113696-64113715 Msa0743630:intron 40.0%
GCTGAGTTTGGAGAATCATT+TGG - chr5_1:64113708-64113727 Msa0743630:intron 40.0%
! GTTTCTGCTGTCAATTTTGG+TGG - chr5_1:64113790-64113809 Msa0743630:CDS 40.0%
AGTAAAGGTTACTGTAGGCA+TGG - chr5_1:64113880-64113899 Msa0743630:intron 40.0%
!!! GAGCTTTTAAAGCAGAGAAG+AGG - chr5_1:64114039-64114058 Msa0743630:intron 40.0%
!! AAAAAGGTACTGCAAGCACA+TGG - chr5_1:64114111-64114130 Msa0743630:intron 40.0%
! AACATTCTTTTCTGCTGGCA+TGG + chr5_1:64114609-64114628 None:intergenic 40.0%
TGCCAGCAGAAAAGAATGTT+TGG - chr5_1:64114609-64114628 Msa0743630:intron 40.0%
GCCAGCAGAAAAGAATGTTT+GGG - chr5_1:64114610-64114629 Msa0743630:intron 40.0%
! ACCCAAACATTCTTTTCTGC+TGG + chr5_1:64114614-64114633 None:intergenic 40.0%
GGAAATCCTCATTATGTTCG+TGG - chr5_1:64114681-64114700 Msa0743630:intron 40.0%
TGTGCTTGTGAAACCTTACA+GGG - chr5_1:64114710-64114729 Msa0743630:intron 40.0%
!! ATTCCTCGGTGTTTATTCTC+TGG - chr5_1:64114953-64114972 Msa0743630:intron 40.0%
TATCTATATATGGCACGCGT+TGG - chr5_1:64115032-64115051 Msa0743630:intron 40.0%
ACAGAGGCAACTTCAAGAAT+GGG + chr5_1:64115191-64115210 None:intergenic 40.0%
AACAGAGGCAACTTCAAGAA+TGG + chr5_1:64115192-64115211 None:intergenic 40.0%
! CTCTGTTTCTCGTGATGAAT+CGG - chr5_1:64115205-64115224 Msa0743630:intron 40.0%
GGTACGAGATACATGTTCTA+TGG + chr5_1:64115461-64115480 None:intergenic 40.0%
AGCAAAAACGAACCTGAGTA+AGG + chr5_1:64115943-64115962 None:intergenic 40.0%
! AACACGATAGTAGGATTGGT+AGG + chr5_1:64116065-64116084 None:intergenic 40.0%
ATTGGGATCCTAAGTAGGAT+CGG + chr5_1:64116100-64116119 None:intergenic 40.0%
GGAGATGATAGAAAATGGAG+AGG - chr5_1:64116197-64116216 Msa0743630:intron 40.0%
ACTTCGGTATGTATTTCAGG+AGG - chr5_1:64116575-64116594 Msa0743630:CDS 40.0%
AATCACAGAGGAAACCAGTA+AGG + chr5_1:64116781-64116800 None:intergenic 40.0%
!! TTACTGGTTTCCTCTGTGAT+TGG - chr5_1:64116780-64116799 Msa0743630:CDS 40.0%
ATTGAGAAAGCCAATCACAG+AGG + chr5_1:64116793-64116812 None:intergenic 40.0%
CTATGGTTCCCATAACTTCT+TGG + chr5_1:64116864-64116883 None:intergenic 40.0%
!!! ACCTCATTTTGGGTTTCCTA+TGG - chr5_1:64116986-64117005 Msa0743630:CDS 40.0%
TCCATAGGAAACCCAAAATG+AGG + chr5_1:64116990-64117009 None:intergenic 40.0%
GGAATCAGTGTCAGTATTCT+TGG + chr5_1:64117183-64117202 None:intergenic 40.0%
!! AATACTGACACTGATTCCTC+TGG - chr5_1:64117185-64117204 Msa0743630:intron 40.0%
! CAATTTTCCTTTGGTGAGCT+AGG - chr5_1:64117266-64117285 Msa0743630:intron 40.0%
! GGCTGTATAGTGCTGTTAAA+TGG - chr5_1:64117379-64117398 Msa0743630:intron 40.0%
CTGAAATTAGTTGCAGATGG+CGG + chr5_1:64117503-64117522 None:intergenic 40.0%
TAGCAATCGTACTGCATGTA+AGG + chr5_1:64117548-64117567 None:intergenic 40.0%
!! TGGAAATGCAAATGGACTGT+CGG + chr5_1:64117686-64117705 None:intergenic 40.0%
CAGTCCATTTGCATTTCCAA+TGG - chr5_1:64117687-64117706 Msa0743630:intron 40.0%
GAAGTACAGAGTTAGAACAG+TGG - chr5_1:64117756-64117775 Msa0743630:intron 40.0%
! TTCCTTTTTGCAACTGGAAC+TGG - chr5_1:64117921-64117940 Msa0743630:intron 40.0%
TTGGACAACCTTTCAGAATG+TGG - chr5_1:64118104-64118123 Msa0743630:five_prime_UTR 40.0%
CTAGAAAGAAAGCTGCTCAT+AGG + chr5_1:64118156-64118175 None:intergenic 40.0%
! ACTCACTCAGTGCGTTTTGT+TGG - chr5_1:64112280-64112299 Msa0743630:three_prime_UTR 45.0%
CTGTGTCTTTAGGTGATTGG+GGG - chr5_1:64113105-64113124 Msa0743630:intron 45.0%
ATGGCGAACAAGAAATGGCT+AGG - chr5_1:64113404-64113423 Msa0743630:CDS 45.0%
CGAACAAGAAATGGCTAGGT+TGG - chr5_1:64113408-64113427 Msa0743630:CDS 45.0%
TCTTGTCCTGACCACATCAT+CGG - chr5_1:64113433-64113452 Msa0743630:CDS 45.0%
CATCGGTGAAGTCGTCTTTA+AGG - chr5_1:64113450-64113469 Msa0743630:CDS 45.0%
!! TTGACATTAGGTGGCGGAAT+TGG + chr5_1:64113520-64113539 None:intergenic 45.0%
TGTTGAGGGTTGACATTAGG+TGG + chr5_1:64113529-64113548 None:intergenic 45.0%
CCTTGTTGAGGGTTGACATT+AGG + chr5_1:64113532-64113551 None:intergenic 45.0%
CCTAATGTCAACCCTCAACA+AGG - chr5_1:64113529-64113548 Msa0743630:CDS 45.0%
ACGGAGATAATGCCGGAAAA+TGG + chr5_1:64113561-64113580 None:intergenic 45.0%
TGAAAGTTCAGCGGTGAAGA+CGG + chr5_1:64113580-64113599 None:intergenic 45.0%
TGTGGATCCCAATAGGAAGA+TGG + chr5_1:64113607-64113626 None:intergenic 45.0%
GGTAGATTGTGGATCCCAAT+AGG + chr5_1:64113614-64113633 None:intergenic 45.0%
AAAGGTTACTGTAGGCATGG+AGG - chr5_1:64113883-64113902 Msa0743630:intron 45.0%
TCGCGCGACTCAATAGTATT+CGG - chr5_1:64114190-64114209 Msa0743630:intron 45.0%
! TGGTTGATTTACAGGCCTCA+CGG - chr5_1:64114300-64114319 Msa0743630:intron 45.0%
TGACAGCACTTTCACTGAAG+AGG - chr5_1:64114428-64114447 Msa0743630:intron 45.0%
GTGTGCTTGTGAAACCTTAC+AGG - chr5_1:64114709-64114728 Msa0743630:intron 45.0%
ACCTTACAGGGAGAAGACAA+AGG - chr5_1:64114722-64114741 Msa0743630:intron 45.0%
ACCTTTGTCTTCTCCCTGTA+AGG + chr5_1:64114726-64114745 None:intergenic 45.0%
GAACCAGAGAATAAACACCG+AGG + chr5_1:64114959-64114978 None:intergenic 45.0%
CGATTCATCACGAGAAACAG+AGG + chr5_1:64115207-64115226 None:intergenic 45.0%
TATGGACAATGGAACAGGTG+CGG + chr5_1:64115483-64115502 None:intergenic 45.0%
AATGGAGAAAGGAAACGGAG+AGG + chr5_1:64115786-64115805 None:intergenic 45.0%
! TGATTTGGGCCATTGTAGTC+AGG - chr5_1:64115854-64115873 Msa0743630:intron 45.0%
GCCATTGTAGTCAGGATTGA+GGG - chr5_1:64115862-64115881 Msa0743630:intron 45.0%
GCTCGTGAAAACACGATAGT+AGG + chr5_1:64116074-64116093 None:intergenic 45.0%
TCAGGATTGGGATCCTAAGT+AGG + chr5_1:64116105-64116124 None:intergenic 45.0%
GAGCCCAAATCAATGTAGTC+AGG + chr5_1:64116123-64116142 None:intergenic 45.0%
! GTTTGAAGGGTATGGCATCT+TGG - chr5_1:64116391-64116410 Msa0743630:CDS 45.0%
!! CAGGAGGTACCATGATAGAA+TGG - chr5_1:64116591-64116610 Msa0743630:CDS 45.0%
! CAGAGTGCTCCATTCTATCA+TGG + chr5_1:64116603-64116622 None:intergenic 45.0%
TGAAATGGGAAAAGGTCGTC+GGG + chr5_1:64116967-64116986 None:intergenic 45.0%
GTGAAATGGGAAAAGGTCGT+CGG + chr5_1:64116968-64116987 None:intergenic 45.0%
TGTATACCTATTCCCTCCAG+AGG + chr5_1:64117204-64117223 None:intergenic 45.0%
CTATAAGCCTAGCTCACCAA+AGG + chr5_1:64117276-64117295 None:intergenic 45.0%
GCACCGTTCTTCCTATCAAA+AGG - chr5_1:64117295-64117314 Msa0743630:intron 45.0%
!! GAAATGCAAATGGACTGTCG+GGG + chr5_1:64117684-64117703 None:intergenic 45.0%
!! GGAAATGCAAATGGACTGTC+GGG + chr5_1:64117685-64117704 None:intergenic 45.0%
GTACAGAGTTAGAACAGTGG+AGG - chr5_1:64117759-64117778 Msa0743630:intron 45.0%
CACCAGTTCCAGTTGCAAAA+AGG + chr5_1:64117926-64117945 None:intergenic 45.0%
! CTTTTTGCAACTGGAACTGG+TGG - chr5_1:64117924-64117943 Msa0743630:intron 45.0%
ACTTCACCGATGATGTGGTC+AGG + chr5_1:64113442-64113461 None:intergenic 50.0%
AGACGACTTCACCGATGATG+TGG + chr5_1:64113447-64113466 None:intergenic 50.0%
TGAGGGTTGACATTAGGTGG+CGG + chr5_1:64113526-64113545 None:intergenic 50.0%
GGTGAAGACGGAGATAATGC+CGG + chr5_1:64113568-64113587 None:intergenic 50.0%
CATGTGAATACCGGAACTCG+AGG - chr5_1:64113733-64113752 Msa0743630:intron 50.0%
AACAGCAAGACCTCGAGTTC+CGG + chr5_1:64113746-64113765 None:intergenic 50.0%
AGGATCCGGTGATTTCACCA+GGG - chr5_1:64113986-64114005 Msa0743630:intron 50.0%
AGTGACCCTGGTGAAATCAC+CGG + chr5_1:64113994-64114013 None:intergenic 50.0%
TCTATCTGAGCTAGTGACCC+TGG + chr5_1:64114006-64114025 None:intergenic 50.0%
GGCAGCGAAGCAATTGACAT+TGG + chr5_1:64114069-64114088 None:intergenic 50.0%
TTAACTGAGAGCCAGCGACA+TGG - chr5_1:64114138-64114157 Msa0743630:intron 50.0%
!! TCAGTGAAAGTGCTGTCAGC+TGG + chr5_1:64114426-64114445 None:intergenic 50.0%
CGAGAGCCACGAACATAATG+AGG + chr5_1:64114690-64114709 None:intergenic 50.0%
ATGGACAATGGAACAGGTGC+GGG + chr5_1:64115482-64115501 None:intergenic 50.0%
GGCCATTGTAGTCAGGATTG+AGG - chr5_1:64115861-64115880 Msa0743630:intron 50.0%
GCCCTCAATCCTGACTACAA+TGG + chr5_1:64115866-64115885 None:intergenic 50.0%
TTGTAGTCAGGATTGAGGGC+TGG - chr5_1:64115866-64115885 Msa0743630:intron 50.0%
!! AGGATTGAGGGCTGGTTTGT+AGG - chr5_1:64115874-64115893 Msa0743630:intron 50.0%
ACCTGAGTAAGGTCGAAGCA+CGG + chr5_1:64115932-64115951 None:intergenic 50.0%
GGAACTCTCAACGCATCCAT+AGG + chr5_1:64117005-64117024 None:intergenic 50.0%
GATGCGTTGAGAGTTCCAGA+TGG - chr5_1:64117008-64117027 Msa0743630:CDS 50.0%
!! ACTGACACTGATTCCTCTGG+AGG - chr5_1:64117188-64117207 Msa0743630:intron 50.0%
!! CTGACACTGATTCCTCTGGA+GGG - chr5_1:64117189-64117208 Msa0743630:intron 50.0%
! CTGATTCCTCTGGAGGGAAT+AGG - chr5_1:64117195-64117214 Msa0743630:intron 50.0%
GTTAGAACAGTGGAGGCCAA+AGG - chr5_1:64117766-64117785 Msa0743630:intron 50.0%
!! AGGTGGCGGAATTGGCATCA+TGG + chr5_1:64113512-64113531 None:intergenic 55.0%
GAGGATCCGGTGATTTCACC+AGG - chr5_1:64113985-64114004 Msa0743630:intron 55.0%
GTCAATTGCTTCGCTGCCGA+TGG - chr5_1:64114071-64114090 Msa0743630:intron 55.0%
AGCCAGCGACATGGTAAGTC+TGG - chr5_1:64114147-64114166 Msa0743630:intron 55.0%
AGCCAGACTTACCATGTCGC+TGG + chr5_1:64114152-64114171 None:intergenic 55.0%
ACCACTGCATGTTGTCCGTG+AGG + chr5_1:64114318-64114337 None:intergenic 55.0%
CGGACAACATGCAGTGGTTC+TGG - chr5_1:64114320-64114339 Msa0743630:intron 55.0%
TCGTACGATCCTACGTCCCA+TGG - chr5_1:64115898-64115917 Msa0743630:intron 55.0%
! AAGCACGGTTGAGGTGCCAT+GGG + chr5_1:64115917-64115936 None:intergenic 55.0%
GTAAGGTCGAAGCACGGTTG+AGG + chr5_1:64115926-64115945 None:intergenic 55.0%
ACCGTGCTTCGACCTTACTC+AGG - chr5_1:64115928-64115947 Msa0743630:intron 55.0%
CGAGCTGACCGATCCTACTT+AGG - chr5_1:64116089-64116108 Msa0743630:CDS 55.0%
GCCTCACGGACAACATGCAG+TGG - chr5_1:64114314-64114333 Msa0743630:intron 60.0%
! GTTGAGGTGCCATGGGACGT+AGG + chr5_1:64115910-64115929 None:intergenic 60.0%
! GAAGCACGGTTGAGGTGCCA+TGG + chr5_1:64115918-64115937 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64112147 64118275 64112147 ID=Msa0743630;Name=Msa0743630
chr5_1 mRNA 64112147 64118275 64112147 ID=Msa0743630-mRNA-1;Parent=Msa0743630;Name=Msa0743630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=275|1|1|1|0.85|0.87|8|552|551
chr5_1 exon 64112147 64112759 64112147 ID=Msa0743630-mRNA-1:exon:18970;Parent=Msa0743630-mRNA-1
chr5_1 exon 64113206 64113296 64113206 ID=Msa0743630-mRNA-1:exon:18969;Parent=Msa0743630-mRNA-1
chr5_1 exon 64113393 64113563 64113393 ID=Msa0743630-mRNA-1:exon:18968;Parent=Msa0743630-mRNA-1
chr5_1 exon 64113752 64113828 64113752 ID=Msa0743630-mRNA-1:exon:18967;Parent=Msa0743630-mRNA-1
chr5_1 exon 64115668 64115847 64115668 ID=Msa0743630-mRNA-1:exon:18966;Parent=Msa0743630-mRNA-1
chr5_1 exon 64115953 64116108 64115953 ID=Msa0743630-mRNA-1:exon:18965;Parent=Msa0743630-mRNA-1
chr5_1 exon 64116199 64117137 64116199 ID=Msa0743630-mRNA-1:exon:18964;Parent=Msa0743630-mRNA-1
chr5_1 exon 64118020 64118275 64118020 ID=Msa0743630-mRNA-1:exon:18963;Parent=Msa0743630-mRNA-1
chr5_1 five_prime_UTR 64118020 64118275 64118020 ID=Msa0743630-mRNA-1:five_prime_utr;Parent=Msa0743630-mRNA-1
chr5_1 five_prime_UTR 64117119 64117137 64117119 ID=Msa0743630-mRNA-1:five_prime_utr;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64116199 64117118 64116199 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64115953 64116108 64115953 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64115668 64115847 64115668 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64113752 64113828 64113752 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64113393 64113563 64113393 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64113206 64113296 64113206 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 CDS 64112699 64112759 64112699 ID=Msa0743630-mRNA-1:cds;Parent=Msa0743630-mRNA-1
chr5_1 three_prime_UTR 64112147 64112698 64112147 ID=Msa0743630-mRNA-1:three_prime_utr;Parent=Msa0743630-mRNA-1
Gene Sequence

>Msa0743630

ATGGATATATCAGAGTACACAAGAATTGTGTTTGATAAAATTCAGAAATTTGAGCCTGAAAATGCTAGAAAGATTATTGGCTATCTTCTTTTACAAGACAATGGCGAACAAGAAATGGCTAGGTTGGCTTCTTGTCCTGACCACATCATCGGTGAAGTCGTCTTTAAGGCCAAAACTGATCTTCAAATAATGGCTGTTAATTCAACCATGATGCCAATTCCGCCACCTAATGTCAACCCTCAACAAGGTTTAAGCCATTTTCCGGCATTATCTCCGTCTTCACCGCTGAACTTTCAAGTTCCATCTTCCTATTGGGATCCACAATCTACCAGCAATGCAAATCCTGAATTTACGGGAATGAATTACATGGATTCTATTGTAGAACTTCAAAAACAAACGCAATTGCTGAGTTTGGAGAATCATTTGGATCATGTGAATACCGGAACTCGAGGTCTTGCTGTTAATGATTACAACAATGGCTTAGATGTTTCTGCTGTCAATTTTGGTGGAAAAGCTACAAAAAGGTTTTCAAATTCAAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGGCATGGAGGTAACTGTAGATATTTTCATGGTCAAGTTCCTCACGACAGTTTCTCTTATATGCATGGAAATAATGATAATACTAGCAATGAGGATCCGGTGATTTCACCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTAAAGCAGAGAAGAGGAAATCCAATGTCAATTGCTTCGCTGCCGATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCACATGGTTATTTAACTGAGAGCCAGCGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGCGCGACTCAATAGTATTCGGCTAATTGATAGGCCTCACGGACAACATGCAGTGGTTCTGGCTGAAGATGCTCCAAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCATCGCGACAGATATATCTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCAGAATACTTCAACGCATTTGGGTATGTTGAAGATGTTAGGATTCCATGCCAGCAGAAAAGAATGTTTGGGTTTGTAACATTTGCTGATCCTGAAACTGTGAGAATGATTTTGGACAAGGGAAATCCTCATTATGTTCGTGGCTCTCGTGTGCTTGTGAAACCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCATGATAGAATGGAGCACTCTGCTTGCTGTCCACATCACTTTGCAAATATCGACTCTGAACTTGACTCAATTCCAAGAAGTTATGGGAACCATAGATCTCTAAGTAGACAGTTGATGGAAGAGCATGAACAAGCTTTTGAATTGCAAAGGAGACGTCTTGCGCAGCTGCAATTTACCCGACGACCTTTTCCCATTTCACCTCATTTTGGGTTTCCTATGGATGCGTTGAGAGTTCCAGATGATCATTTCAATTTCCAGGCTGCGGAACCTCTAAATCATGCGTTGAATAACAACACCAAGAATACTGACACTGATTCCTCTGGAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATTTCCAATGGAAAATGATAAATAG

Protein sequence

>Msa0743630

MDISEYTRIVFDKIQKFEPENARKIIGYLLLQDNGEQEMARLASCPDHIIGEVVFKAKTDLQIMAVNSTMMPIPPPNVNPQQGLSHFPALSPSSPLNFQVPSSYWDPQSTSNANPEFTGMNYMDSIVELQKQTQLLSLENHLDHVNTGTRGLAVNDYNNGLDVSAVNFGGKATKRFSNSNMSEFPLKICHYFSKGYCRHGGNCRYFHGQVPHDSFSYMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKLLARLNSIRLIDRPHGQHAVVLAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYHDRMEHSACCPHHFANIDSELDSIPRSYGNHRSLSRQLMEEHEQAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDDHFNFQAAEPLNHALNNNTKNTDTDSSGGNSNEGLNLPDSPFAFPMENDK*