Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182340 | XP_013470146.1 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.47e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182340 | sp|Q8RYC6|IAA32_ARATH | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.24e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182340 | A0A072VQ82 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 1.66e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0182340 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043210 | Msa0182340 | 0.856119 | 3.989085e-62 | -8.615850e-47 |
| Msa0137150 | Msa0182340 | 0.862369 | 5.321694e-64 | -8.615850e-47 |
| Msa0182340 | Msa1041530 | 0.807069 | 6.052095e-50 | -8.615850e-47 |
| Msa0182340 | Msa1081570 | 0.804310 | 2.297427e-49 | -8.615850e-47 |
| Msa0182340 | Msa1127140 | 0.816865 | 4.436566e-52 | -8.615850e-47 |
| Msa0182340 | Msa1419490 | 0.936748 | 1.057012e-97 | -8.615850e-47 |
| Msa0182340 | Msa1423700 | 0.933261 | 2.456914e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182340 | MtrunA17_Chr1g0209181 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.19e-126 | 352 |
| Msa0182340 | MtrunA17_Chr1g0183251 | 40.385 | 104 | 43 | 2 | 89 | 173 | 146 | 249 | 5.02e-17 | 76.6 |
| Msa0182340 | MtrunA17_Chr5g0428141 | 32.653 | 147 | 77 | 4 | 44 | 173 | 187 | 328 | 3.61e-16 | 75.1 |
| Msa0182340 | MtrunA17_Chr1g0193861 | 42.697 | 89 | 49 | 1 | 90 | 176 | 85 | 173 | 1.53e-15 | 70.9 |
| Msa0182340 | MtrunA17_Chr1g0166011 | 36.879 | 141 | 65 | 5 | 39 | 173 | 53 | 175 | 4.45e-15 | 69.7 |
| Msa0182340 | MtrunA17_Chr4g0069561 | 31.544 | 149 | 83 | 4 | 29 | 176 | 53 | 183 | 1.11e-14 | 68.6 |
| Msa0182340 | MtrunA17_Chr3g0137601 | 27.737 | 137 | 93 | 2 | 39 | 173 | 74 | 206 | 1.48e-14 | 68.9 |
| Msa0182340 | MtrunA17_Chr6g0486121 | 34.459 | 148 | 71 | 5 | 46 | 173 | 94 | 235 | 1.95e-14 | 69.3 |
| Msa0182340 | MtrunA17_Chr7g0270851 | 43.023 | 86 | 47 | 1 | 90 | 173 | 70 | 155 | 2.31e-14 | 67.4 |
| Msa0182340 | MtrunA17_Chr5g0411501 | 29.412 | 136 | 79 | 3 | 54 | 173 | 182 | 316 | 4.49e-14 | 68.9 |
| Msa0182340 | MtrunA17_Chr1g0187961 | 36.290 | 124 | 59 | 4 | 54 | 173 | 64 | 171 | 4.39e-13 | 64.3 |
| Msa0182340 | MtrunA17_Chr8g0340731 | 37.624 | 101 | 46 | 2 | 90 | 173 | 157 | 257 | 7.51e-13 | 65.1 |
| Msa0182340 | MtrunA17_Chr8g0366881 | 31.081 | 148 | 76 | 5 | 46 | 173 | 188 | 329 | 8.69e-13 | 65.5 |
| Msa0182340 | MtrunA17_Chr2g0331411 | 30.612 | 147 | 83 | 4 | 44 | 173 | 163 | 307 | 1.18e-12 | 65.1 |
| Msa0182340 | MtrunA17_Chr4g0064131 | 28.226 | 124 | 80 | 3 | 51 | 173 | 90 | 205 | 3.14e-12 | 62.4 |
| Msa0182340 | MtrunA17_Chr8g0390281 | 27.879 | 165 | 88 | 4 | 37 | 173 | 113 | 274 | 8.63e-12 | 62.4 |
| Msa0182340 | MtrunA17_Chr1g0190711 | 32.374 | 139 | 73 | 4 | 54 | 173 | 98 | 234 | 1.23e-11 | 61.6 |
| Msa0182340 | MtrunA17_Chr2g0330951 | 34.951 | 103 | 48 | 2 | 90 | 173 | 149 | 251 | 3.37e-11 | 60.5 |
| Msa0182340 | MtrunA17_Chr7g0260621 | 33.058 | 121 | 70 | 3 | 54 | 173 | 84 | 194 | 8.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0182340 | AT2G01200.2 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0182340 | AT2G01200.1 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0182340 | AT1G15050.2 | 47.429 | 175 | 64 | 2 | 1 | 175 | 1 | 147 | 3.02e-51 | 162 |
| Msa0182340 | AT1G15050.1 | 47.429 | 175 | 64 | 2 | 1 | 175 | 33 | 179 | 5.54e-51 | 162 |
| Msa0182340 | AT2G33310.3 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0182340 | AT2G33310.1 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0182340 | AT2G33310.2 | 44.681 | 94 | 42 | 1 | 90 | 173 | 131 | 224 | 1.80e-20 | 85.9 |
| Msa0182340 | AT1G04550.2 | 45.556 | 90 | 42 | 1 | 89 | 171 | 125 | 214 | 3.17e-19 | 82.4 |
| Msa0182340 | AT4G28640.3 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.18e-14 | 68.9 |
| Msa0182340 | AT4G28640.1 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.26e-14 | 68.9 |
| Msa0182340 | AT4G28640.2 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 8.15e-14 | 68.6 |
| Msa0182340 | AT3G62100.1 | 43.529 | 85 | 47 | 1 | 90 | 173 | 84 | 168 | 1.15e-13 | 66.2 |
| Msa0182340 | AT1G52830.1 | 37.634 | 93 | 57 | 1 | 83 | 175 | 88 | 179 | 1.40e-13 | 66.2 |
| Msa0182340 | AT2G46990.1 | 41.111 | 90 | 52 | 1 | 90 | 178 | 86 | 175 | 1.93e-13 | 65.5 |
| Msa0182340 | AT3G17600.1 | 33.884 | 121 | 66 | 3 | 56 | 174 | 47 | 155 | 2.33e-13 | 65.1 |
| Msa0182340 | AT3G15540.1 | 39.773 | 88 | 51 | 2 | 89 | 175 | 97 | 183 | 1.50e-12 | 63.5 |
| Msa0182340 | AT3G16500.1 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 3.91e-12 | 63.5 |
| Msa0182340 | AT3G16500.2 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 4.25e-12 | 63.2 |
| Msa0182340 | AT2G22670.5 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0182340 | AT2G22670.2 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0182340 | AT2G22670.3 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0182340 | AT2G22670.1 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0182340 | AT2G22670.4 | 28.302 | 159 | 90 | 6 | 37 | 173 | 161 | 317 | 7.53e-12 | 63.2 |
| Msa0182340 | AT1G51950.1 | 34.343 | 99 | 48 | 2 | 90 | 173 | 151 | 247 | 8.60e-12 | 62.4 |
| Msa0182340 | AT5G25890.1 | 33.708 | 89 | 54 | 1 | 90 | 178 | 82 | 165 | 9.44e-12 | 60.8 |
| Msa0182340 | AT1G04240.1 | 32.258 | 124 | 70 | 3 | 54 | 173 | 65 | 178 | 2.88e-11 | 60.1 |
| Msa0182340 | AT4G29080.1 | 30.000 | 160 | 89 | 6 | 37 | 173 | 127 | 286 | 3.72e-11 | 60.8 |
| Msa0182340 | AT1G04240.2 | 32.258 | 124 | 70 | 3 | 54 | 173 | 165 | 278 | 4.50e-11 | 60.5 |
| Msa0182340 | AT5G65670.1 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.20e-11 | 60.8 |
| Msa0182340 | AT5G65670.2 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.32e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTCTTCCATGTGCTTT+TGG | 0.186139 | 1_4:+70794533 | None:intergenic |
| GTGCTTGAATTCTTCATATT+AGG | 0.248292 | 1_4:-70795258 | None:intergenic |
| TGTCCTACGTGGAAAATCTA+AGG | 0.324644 | 1_4:+70796104 | Msa0182340:three_prime_UTR |
| GGTATAAGATTATTTCAATC+TGG | 0.393434 | 1_4:+70795729 | Msa0182340:CDS |
| AAAATTTGTATTCTTGATCA+TGG | 0.399284 | 1_4:+70795393 | Msa0182340:CDS |
| ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | 1_4:+70794749 | Msa0182340:CDS |
| TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | 1_4:+70795708 | Msa0182340:intron |
| AGTGTATGATGATGACCTTA+TGG | 0.418403 | 1_4:+70795230 | Msa0182340:intron |
| ATTCAATTAGAAGACATGTT+TGG | 0.424570 | 1_4:+70795435 | Msa0182340:CDS |
| AAACTTTGATGAAGAGATAG+AGG | 0.443595 | 1_4:+70795305 | Msa0182340:CDS |
| ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | 1_4:+70795772 | Msa0182340:CDS |
| ATCTTATACCAGATACTGAT+TGG | 0.459323 | 1_4:-70795716 | None:intergenic |
| TCATATTAGGCCAATCCATA+AGG | 0.461452 | 1_4:-70795245 | None:intergenic |
| AAACATGTCTTCTAATTGAA+TGG | 0.463927 | 1_4:-70795433 | None:intergenic |
| CTAGATGAATTTGAGTCCAT+TGG | 0.479109 | 1_4:-70794662 | None:intergenic |
| GATGATGGCATAATTGATCT+TGG | 0.492063 | 1_4:+70794737 | Msa0182340:CDS |
| AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | 1_4:-70795332 | None:intergenic |
| ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | 1_4:+70795355 | Msa0182340:CDS |
| TATGTGAAGGTTAACATGGA+TGG | 0.499449 | 1_4:+70795354 | Msa0182340:CDS |
| TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | 1_4:+70795931 | Msa0182340:CDS |
| AGGATTGCACGCAAGAATGC+AGG | 0.524174 | 1_4:+70795951 | Msa0182340:CDS |
| GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | 1_4:+70795329 | Msa0182340:CDS |
| GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | 1_4:+70795328 | Msa0182340:CDS |
| AACATGGATGGGGTCTCCAT+TGG | 0.556874 | 1_4:+70795366 | Msa0182340:CDS |
| GTCCTACGTGGAAAATCTAA+GGG | 0.557347 | 1_4:+70796105 | Msa0182340:three_prime_UTR |
| TATCAGGACAAACATGATGA+TGG | 0.557533 | 1_4:+70794722 | Msa0182340:CDS |
| AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | 1_4:+70795925 | Msa0182340:CDS |
| AACTTTGATGAAGAGATAGA+GGG | 0.577407 | 1_4:+70795306 | Msa0182340:CDS |
| GGATGAACACATACTTCCAC+AGG | 0.585852 | 1_4:-70795812 | None:intergenic |
| AGGATAGTGAAGACAATTGG+AGG | 0.586064 | 1_4:+70795775 | Msa0182340:CDS |
| GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | 1_4:+70795796 | Msa0182340:CDS |
| TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | 1_4:+70795370 | Msa0182340:CDS |
| GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | 1_4:+70795350 | Msa0182340:CDS |
| TGTGAAGGTTAACATGGATG+GGG | 0.610516 | 1_4:+70795356 | Msa0182340:CDS |
| AGGGCATTATATCATACCAA+TGG | 0.616988 | 1_4:+70794646 | Msa0182340:exon |
| AGAGTACTCATTATTCTACA+AGG | 0.631045 | 1_4:+70795755 | Msa0182340:CDS |
| ATGATGATGACCTTATGGAT+TGG | 0.632385 | 1_4:+70795235 | Msa0182340:CDS |
| TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | 1_4:+70795341 | Msa0182340:CDS |
| GTGGAAATTCCAAAAGCACA+TGG | 0.637670 | 1_4:-70794542 | None:intergenic |
| GAAGACAATTGGAGGACTGT+TGG | 0.640837 | 1_4:+70795783 | Msa0182340:CDS |
| ATTTGTATTCTTGATCATGG+AGG | 0.642489 | 1_4:+70795396 | Msa0182340:CDS |
| ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | 1_4:+70795307 | Msa0182340:CDS |
| TCCTACGTGGAAAATCTAAG+GGG | 0.690768 | 1_4:+70796106 | Msa0182340:three_prime_UTR |
| TAGTAAAGCCATGTCCTACG+TGG | 0.693031 | 1_4:+70796093 | Msa0182340:three_prime_UTR |
| CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | 1_4:+70795308 | Msa0182340:CDS |
| CCTACGTGGAAAATCTAAGG+GGG | 0.731256 | 1_4:+70796107 | Msa0182340:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAACTTTTTAAAATGAT+GGG | - | chr1_4:70794890-70794909 | None:intergenic | 10.0% |
| !!! | TATAAAACTTTTTAAAATGA+TGG | - | chr1_4:70794891-70794910 | None:intergenic | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | chr1_4:70795858-70795877 | Msa0182340:intron | 10.0% |
| !!! | ATAAAACTTTTTAAAATGAT+GGG | - | chr1_4:70794890-70794909 | None:intergenic | 10.0% |
| !!! | TATAAAACTTTTTAAAATGA+TGG | - | chr1_4:70794891-70794910 | None:intergenic | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | chr1_4:70795858-70795877 | Msa0182340:intron | 10.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | chr1_4:70794889-70794908 | None:intergenic | 15.0% |
| !! | GATAAATATTATAGATGAAA+AGG | + | chr1_4:70795160-70795179 | Msa0182340:intron | 15.0% |
| !!! | TTTGTAATGTTTTGTTAATA+GGG | + | chr1_4:70795902-70795921 | Msa0182340:intron | 15.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | chr1_4:70794889-70794908 | None:intergenic | 15.0% |
| !! | GATAAATATTATAGATGAAA+AGG | + | chr1_4:70795160-70795179 | Msa0182340:intron | 15.0% |
| !!! | TTTGTAATGTTTTGTTAATA+GGG | + | chr1_4:70795902-70795921 | Msa0182340:intron | 15.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | chr1_4:70794564-70794583 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | chr1_4:70794826-70794845 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | chr1_4:70794827-70794846 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1_4:70794888-70794907 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1_4:70795108-70795127 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | chr1_4:70795393-70795412 | Msa0182340:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1_4:70795836-70795855 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1_4:70795837-70795856 | None:intergenic | 20.0% |
| !!! | GTTTGTAATGTTTTGTTAAT+AGG | + | chr1_4:70795901-70795920 | Msa0182340:intron | 20.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | chr1_4:70794564-70794583 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | chr1_4:70794826-70794845 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | chr1_4:70794827-70794846 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1_4:70794888-70794907 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1_4:70795108-70795127 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | chr1_4:70795393-70795412 | Msa0182340:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1_4:70795836-70795855 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1_4:70795837-70795856 | None:intergenic | 20.0% |
| !!! | GTTTGTAATGTTTTGTTAAT+AGG | + | chr1_4:70795901-70795920 | Msa0182340:intron | 20.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | chr1_4:70794825-70794844 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | chr1_4:70794855-70794874 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | chr1_4:70795038-70795057 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | chr1_4:70795203-70795222 | Msa0182340:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | chr1_4:70795385-70795404 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | chr1_4:70795436-70795455 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | chr1_4:70795435-70795454 | Msa0182340:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | chr1_4:70795677-70795696 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | chr1_4:70795729-70795748 | Msa0182340:CDS | 25.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | chr1_4:70794825-70794844 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | chr1_4:70794855-70794874 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | chr1_4:70795038-70795057 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | chr1_4:70795203-70795222 | Msa0182340:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | chr1_4:70795385-70795404 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | chr1_4:70795436-70795455 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | chr1_4:70795435-70795454 | Msa0182340:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | chr1_4:70795677-70795696 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | chr1_4:70795729-70795748 | Msa0182340:CDS | 25.0% |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | chr1_4:70794626-70794645 | Msa0182340:five_prime_UTR | 30.0% |
| !!! | GACCACTAAACTTTTTCATA+GGG | + | chr1_4:70794627-70794646 | Msa0182340:five_prime_UTR | 30.0% |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | chr1_4:70794706-70794725 | Msa0182340:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | chr1_4:70795129-70795148 | Msa0182340:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | chr1_4:70795261-70795280 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1_4:70795302-70795321 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | chr1_4:70795305-70795324 | Msa0182340:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | chr1_4:70795306-70795325 | Msa0182340:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | chr1_4:70795396-70795415 | Msa0182340:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | chr1_4:70795503-70795522 | Msa0182340:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | chr1_4:70795619-70795638 | Msa0182340:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | chr1_4:70795690-70795709 | Msa0182340:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | chr1_4:70795719-70795738 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | chr1_4:70795755-70795774 | Msa0182340:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | chr1_4:70795925-70795944 | Msa0182340:CDS | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | chr1_4:70794626-70794645 | Msa0182340:five_prime_UTR | 30.0% |
| !!! | GACCACTAAACTTTTTCATA+GGG | + | chr1_4:70794627-70794646 | Msa0182340:five_prime_UTR | 30.0% |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | chr1_4:70794706-70794725 | Msa0182340:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | chr1_4:70795129-70795148 | Msa0182340:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | chr1_4:70795261-70795280 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1_4:70795302-70795321 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | chr1_4:70795305-70795324 | Msa0182340:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | chr1_4:70795306-70795325 | Msa0182340:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | chr1_4:70795396-70795415 | Msa0182340:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | chr1_4:70795503-70795522 | Msa0182340:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | chr1_4:70795619-70795638 | Msa0182340:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | chr1_4:70795690-70795709 | Msa0182340:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | chr1_4:70795719-70795738 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | chr1_4:70795755-70795774 | Msa0182340:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | chr1_4:70795925-70795944 | Msa0182340:CDS | 30.0% | |
| TGCCCTATGAAAAAGTTTAG+TGG | - | chr1_4:70794632-70794651 | None:intergenic | 35.0% | |
| ! | AGGGCATTATATCATACCAA+TGG | + | chr1_4:70794646-70794665 | Msa0182340:exon | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | - | chr1_4:70794665-70794684 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | chr1_4:70794722-70794741 | Msa0182340:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | chr1_4:70794737-70794756 | Msa0182340:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1_4:70794749-70794768 | Msa0182340:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | chr1_4:70795230-70795249 | Msa0182340:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | chr1_4:70795235-70795254 | Msa0182340:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | chr1_4:70795248-70795267 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | chr1_4:70795307-70795326 | Msa0182340:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | chr1_4:70795354-70795373 | Msa0182340:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | chr1_4:70795355-70795374 | Msa0182340:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | chr1_4:70795471-70795490 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | chr1_4:70795512-70795531 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | chr1_4:70795772-70795791 | Msa0182340:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | chr1_4:70795931-70795950 | Msa0182340:CDS | 35.0% | |
| TGCCCTATGAAAAAGTTTAG+TGG | - | chr1_4:70794632-70794651 | None:intergenic | 35.0% | |
| ! | AGGGCATTATATCATACCAA+TGG | + | chr1_4:70794646-70794665 | Msa0182340:exon | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | - | chr1_4:70794665-70794684 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | chr1_4:70794722-70794741 | Msa0182340:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | chr1_4:70794737-70794756 | Msa0182340:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1_4:70794749-70794768 | Msa0182340:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | chr1_4:70795230-70795249 | Msa0182340:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | chr1_4:70795235-70795254 | Msa0182340:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | chr1_4:70795248-70795267 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | chr1_4:70795307-70795326 | Msa0182340:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | chr1_4:70795354-70795373 | Msa0182340:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | chr1_4:70795355-70795374 | Msa0182340:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | chr1_4:70795471-70795490 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | chr1_4:70795512-70795531 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | chr1_4:70795772-70795791 | Msa0182340:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | chr1_4:70795931-70795950 | Msa0182340:CDS | 35.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | chr1_4:70794545-70794564 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | chr1_4:70795308-70795327 | Msa0182340:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | chr1_4:70795350-70795369 | Msa0182340:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | chr1_4:70795356-70795375 | Msa0182340:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | chr1_4:70795630-70795649 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | chr1_4:70795705-70795724 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | chr1_4:70795706-70795725 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | chr1_4:70795775-70795794 | Msa0182340:CDS | 40.0% | |
| ! | TAGATTTTCCACGTAGGACA+TGG | - | chr1_4:70796104-70796123 | None:intergenic | 40.0% |
| TGTCCTACGTGGAAAATCTA+AGG | + | chr1_4:70796104-70796123 | Msa0182340:three_prime_UTR | 40.0% | |
| GTCCTACGTGGAAAATCTAA+GGG | + | chr1_4:70796105-70796124 | Msa0182340:three_prime_UTR | 40.0% | |
| TCCTACGTGGAAAATCTAAG+GGG | + | chr1_4:70796106-70796125 | Msa0182340:three_prime_UTR | 40.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | chr1_4:70794545-70794564 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | chr1_4:70795308-70795327 | Msa0182340:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | chr1_4:70795350-70795369 | Msa0182340:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | chr1_4:70795356-70795375 | Msa0182340:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | chr1_4:70795630-70795649 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | chr1_4:70795705-70795724 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | chr1_4:70795706-70795725 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | chr1_4:70795775-70795794 | Msa0182340:CDS | 40.0% | |
| ! | TAGATTTTCCACGTAGGACA+TGG | - | chr1_4:70796104-70796123 | None:intergenic | 40.0% |
| TGTCCTACGTGGAAAATCTA+AGG | + | chr1_4:70796104-70796123 | Msa0182340:three_prime_UTR | 40.0% | |
| GTCCTACGTGGAAAATCTAA+GGG | + | chr1_4:70796105-70796124 | Msa0182340:three_prime_UTR | 40.0% | |
| TCCTACGTGGAAAATCTAAG+GGG | + | chr1_4:70796106-70796125 | Msa0182340:three_prime_UTR | 40.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1_4:70795341-70795360 | Msa0182340:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | chr1_4:70795708-70795727 | Msa0182340:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | chr1_4:70795783-70795802 | Msa0182340:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | chr1_4:70795815-70795834 | None:intergenic | 45.0% | |
| TAGTAAAGCCATGTCCTACG+TGG | + | chr1_4:70796093-70796112 | Msa0182340:three_prime_UTR | 45.0% | |
| CCTACGTGGAAAATCTAAGG+GGG | + | chr1_4:70796107-70796126 | Msa0182340:three_prime_UTR | 45.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1_4:70795341-70795360 | Msa0182340:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | chr1_4:70795708-70795727 | Msa0182340:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | chr1_4:70795783-70795802 | Msa0182340:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | chr1_4:70795815-70795834 | None:intergenic | 45.0% | |
| TAGTAAAGCCATGTCCTACG+TGG | + | chr1_4:70796093-70796112 | Msa0182340:three_prime_UTR | 45.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | + | chr1_4:70795329-70795348 | Msa0182340:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | chr1_4:70795335-70795354 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | chr1_4:70795366-70795385 | Msa0182340:CDS | 50.0% | |
| AGGATTGCACGCAAGAATGC+AGG | + | chr1_4:70795951-70795970 | Msa0182340:CDS | 50.0% | |
| ! | CCCCCTTAGATTTTCCACGT+AGG | - | chr1_4:70796110-70796129 | None:intergenic | 50.0% |
| GGTCCAGAGCAATGAGAGAT+GGG | + | chr1_4:70795329-70795348 | Msa0182340:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | chr1_4:70795335-70795354 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | chr1_4:70795366-70795385 | Msa0182340:CDS | 50.0% | |
| AGGATTGCACGCAAGAATGC+AGG | + | chr1_4:70795951-70795970 | Msa0182340:CDS | 50.0% | |
| ! | CCCCCTTAGATTTTCCACGT+AGG | - | chr1_4:70796110-70796129 | None:intergenic | 50.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | + | chr1_4:70795328-70795347 | Msa0182340:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | chr1_4:70795370-70795389 | Msa0182340:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1_4:70795796-70795815 | Msa0182340:CDS | 55.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | + | chr1_4:70795328-70795347 | Msa0182340:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | chr1_4:70795370-70795389 | Msa0182340:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1_4:70795796-70795815 | Msa0182340:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 70794534 | 70796129 | 70794534 | ID=Msa0182340;Name=Msa0182340 |
| chr1_4 | mRNA | 70794534 | 70796129 | 70794534 | ID=Msa0182340-mRNA-1;Parent=Msa0182340;Name=Msa0182340-mRNA-1;_AED=0.15;_eAED=0.15;_QI=131|1|1|1|1|1|4|134|183 |
| chr1_4 | exon | 70794534 | 70794809 | 70794534 | ID=Msa0182340-mRNA-1:exon:23751;Parent=Msa0182340-mRNA-1 |
| chr1_4 | exon | 70795232 | 70795456 | 70795232 | ID=Msa0182340-mRNA-1:exon:23752;Parent=Msa0182340-mRNA-1 |
| chr1_4 | exon | 70795712 | 70795820 | 70795712 | ID=Msa0182340-mRNA-1:exon:23753;Parent=Msa0182340-mRNA-1 |
| chr1_4 | exon | 70795923 | 70796129 | 70795923 | ID=Msa0182340-mRNA-1:exon:23754;Parent=Msa0182340-mRNA-1 |
| chr1_4 | five_prime_UTR | 70794534 | 70794664 | 70794534 | ID=Msa0182340-mRNA-1:five_prime_utr;Parent=Msa0182340-mRNA-1 |
| chr1_4 | CDS | 70794665 | 70794809 | 70794665 | ID=Msa0182340-mRNA-1:cds;Parent=Msa0182340-mRNA-1 |
| chr1_4 | CDS | 70795232 | 70795456 | 70795232 | ID=Msa0182340-mRNA-1:cds;Parent=Msa0182340-mRNA-1 |
| chr1_4 | CDS | 70795712 | 70795820 | 70795712 | ID=Msa0182340-mRNA-1:cds;Parent=Msa0182340-mRNA-1 |
| chr1_4 | CDS | 70795923 | 70795995 | 70795923 | ID=Msa0182340-mRNA-1:cds;Parent=Msa0182340-mRNA-1 |
| chr1_4 | three_prime_UTR | 70795996 | 70796129 | 70795996 | ID=Msa0182340-mRNA-1:three_prime_utr;Parent=Msa0182340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
