AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081570 MtrunA17_Chr7g0268681 95.812 191 7 1 1 190 1 191 4.79e-132 368
Msa1081570 MtrunA17_Chr4g0066721 42.938 177 90 2 1 166 1 177 1.13e-44 147
Msa1081570 MtrunA17_Chr2g0286341 44.242 165 85 2 31 189 26 189 6.96e-39 131
Msa1081570 MtrunA17_Chr4g0066711 34.783 161 95 4 26 181 26 181 1.48e-22 89.7
Msa1081570 MtrunA17_Chr8g0381001 30.994 171 108 4 2 166 4 170 8.99e-21 85.1
Msa1081570 MtrunA17_Chr4g0042551 29.560 159 107 3 21 177 52 207 2.69e-17 76.6
Msa1081570 MtrunA17_Chr2g0303151 29.452 146 97 2 45 184 44 189 8.89e-16 72.0
Msa1081570 MtrunA17_Chr5g0417761 28.571 154 105 3 26 177 26 176 5.19e-15 69.7
Msa1081570 MtrunA17_Chr4g0021111 27.950 161 106 3 21 181 1 151 1.33e-14 68.2
Msa1081570 MtrunA17_Chr7g0217691 27.500 160 111 3 20 177 20 176 9.65e-14 66.2
Msa1081570 MtrunA17_Chr7g0251531 29.078 141 94 3 31 169 33 169 1.83e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081570 AT4G15630.1 39.267 191 109 2 1 185 1 190 2.43e-42 140
Msa1081570 AT4G15620.1 37.895 190 111 2 1 184 1 189 3.85e-39 132
Msa1081570 AT4G15610.1 30.994 171 114 3 1 167 1 171 4.36e-23 91.7
Msa1081570 AT3G06390.1 34.074 135 85 2 29 159 38 172 1.31e-17 77.4
Msa1081570 AT5G44550.1 33.125 160 99 3 32 184 22 180 6.65e-17 75.5
Msa1081570 AT4G15610.2 31.532 111 70 2 63 167 5 115 2.67e-16 72.4
Msa1081570 AT4G20390.1 36.090 133 79 3 32 158 22 154 1.06e-15 72.0
Msa1081570 AT5G15290.1 27.211 147 100 3 21 164 21 163 4.00e-15 70.5
Msa1081570 AT1G14160.1 27.607 163 115 3 26 187 49 209 2.75e-12 63.2
Msa1081570 AT4G16442.1 27.273 176 115 4 17 185 2 171 2.19e-11 60.5

Find 50 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATGTGTTATTTATTCT+AGG 0.225804 7_2:+81349152 Msa1081570:three_prime_UTR
TTCAAAGAGTACTTACTATA+TGG 0.228595 7_2:+81347320 Msa1081570:exon
GCTACTATCATTGTGGGTTT+TGG 0.265618 7_2:+81347465 Msa1081570:CDS
GATGTGTTGCTTAGGGTTCT+TGG 0.291243 7_2:+81347423 Msa1081570:CDS
GAGAGTGAGCCACAAGTAAA+AGG 0.319910 7_2:-81349078 None:intergenic
ACCATCTTGTAAAATAAAAT+AGG 0.325883 7_2:-81349349 None:intergenic
GCTTTGGTCCTATCTATCAT+TGG 0.335452 7_2:+81349043 Msa1081570:CDS
TTCATATGCTGCAATTTCTA+TGG 0.345306 7_2:+81348817 Msa1081570:CDS
CACTGCACCAGCAGCTCCAT+TGG 0.363063 7_2:-81348933 None:intergenic
CATCCACACTTGTCTTTGAC+TGG 0.380763 7_2:-81347347 None:intergenic
AATGCTAGACCTAGTTATAA+TGG 0.390891 7_2:+81348895 Msa1081570:CDS
GTGTTTATGATGTGTTGCTT+AGG 0.399152 7_2:+81347415 Msa1081570:CDS
CTCACTGCTACTATCATTGT+GGG 0.403424 7_2:+81347459 Msa1081570:CDS
TGAGAGTAAGGTGGGGAGGT+TGG 0.405105 7_2:-81347189 None:intergenic
GCTGGTGCAGTGGGAGTGTT+AGG 0.413062 7_2:+81348944 Msa1081570:CDS
TGAGTGAATGAGAGTAAGGT+GGG 0.419864 7_2:-81347197 None:intergenic
TCAAAGAGTACTTACTATAT+GGG 0.423525 7_2:+81347321 Msa1081570:exon
TTCTCAGCCAATGGAGCTGC+TGG 0.424568 7_2:+81348926 Msa1081570:CDS
TCACAGCGATGTGAAGGTTA+TGG 0.427097 7_2:+81347374 Msa1081570:CDS
AACAGTCATGTGACGACAAT+AGG 0.431776 7_2:-81349020 None:intergenic
TGTTTATGATGTGTTGCTTA+GGG 0.433057 7_2:+81347416 Msa1081570:CDS
CAGTGGAACCAATGATAGAT+AGG 0.464992 7_2:-81349051 None:intergenic
TCTATGAGTGAATGAGAGTA+AGG 0.470048 7_2:-81347201 None:intergenic
TCGTCACATGACTGTTGCTT+TGG 0.473880 7_2:+81349027 Msa1081570:CDS
TTCTTGGTGACAAATGCTAT+AGG 0.474689 7_2:+81348791 Msa1081570:CDS
AAATAGTAGTAAGATTAGAA+TGG 0.477912 7_2:-81347228 None:intergenic
TCTCACTGCTACTATCATTG+TGG 0.489600 7_2:+81347458 Msa1081570:CDS
AAGGAAACTCGCACGTGCAA+TGG 0.499701 7_2:+81348972 Msa1081570:CDS
GGAGGTTGGAAATGCATTCA+AGG 0.503857 7_2:-81347175 None:intergenic
ATAGCAAACTCACTTAATAG+AGG 0.531769 7_2:-81349265 None:intergenic
CAGTCAAAGACAAGTGTGGA+TGG 0.535899 7_2:+81347348 Msa1081570:CDS
TGTGTAAGGAACGTTAAAGT+AGG 0.536097 7_2:-81347262 None:intergenic
GCATTACTCTTCTCAGCCAA+TGG 0.539824 7_2:+81348917 Msa1081570:CDS
TCATTATTATAGATCAAACT+AGG 0.542262 7_2:+81349111 Msa1081570:CDS
ATGAGTGAATGAGAGTAAGG+TGG 0.542284 7_2:-81347198 None:intergenic
AATGGAGCTGCTGGTGCAGT+GGG 0.549722 7_2:+81348935 Msa1081570:CDS
ATTCAAAGCTACTGCTAAGT+GGG 0.553173 7_2:+81347524 Msa1081570:CDS
AACACATTAAATATACATGT+AGG 0.554156 7_2:+81347139 None:intergenic
GTGAGTTTGCTATGTTCTAG+TGG 0.561351 7_2:+81349275 Msa1081570:three_prime_UTR
CAATGGAGCTGCTGGTGCAG+TGG 0.564486 7_2:+81348934 Msa1081570:CDS
AATTCAAAGCTACTGCTAAG+TGG 0.570996 7_2:+81347523 Msa1081570:CDS
ACACATTAAATATACATGTA+GGG 0.571629 7_2:+81347140 None:intergenic
GTGGGAGTGTTAGGACAGAA+AGG 0.578933 7_2:+81348953 Msa1081570:CDS
TCAACAATTGCAAGAACCAG+TGG 0.593273 7_2:+81348845 Msa1081570:CDS
TGGAGTTCACAGCGATGTGA+AGG 0.594175 7_2:+81347368 Msa1081570:CDS
AGAGTAATGCCATTATAACT+AGG 0.597714 7_2:-81348904 None:intergenic
TGAATGAGAGTAAGGTGGGG+AGG 0.633538 7_2:-81347193 None:intergenic
AAACCAGTCAAAGACAAGTG+TGG 0.653780 7_2:+81347344 Msa1081570:CDS
GAGTGAATGAGAGTAAGGTG+GGG 0.682004 7_2:-81347196 None:intergenic
CACAAGTAAAAGGAAGACAG+TGG 0.729118 7_2:-81349068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAATTGTAAAAGA+AGG - chr7_2:81347799-81347818 None:intergenic 10.0%
!!! GTATTTATTTTTGAAAATTT+AGG - chr7_2:81347960-81347979 None:intergenic 10.0%
!!! TCTTATATATTGATTAATAA+TGG - chr7_2:81348122-81348141 None:intergenic 10.0%
!!! AAAAATTAATGGTTTTATTT+TGG - chr7_2:81348338-81348357 None:intergenic 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_2:81348349-81348368 None:intergenic 10.0%
!!! TTTTAAAAAATTGTAAAAGA+AGG - chr7_2:81347799-81347818 None:intergenic 10.0%
!!! GTATTTATTTTTGAAAATTT+AGG - chr7_2:81347960-81347979 None:intergenic 10.0%
!!! TCTTATATATTGATTAATAA+TGG - chr7_2:81348122-81348141 None:intergenic 10.0%
!!! AAAAATTAATGGTTTTATTT+TGG - chr7_2:81348338-81348357 None:intergenic 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_2:81348349-81348368 None:intergenic 10.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_2:81347288-81347307 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_2:81347621-81347640 Msa1081570:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_2:81347622-81347641 Msa1081570:intron 15.0%
!! ATACTCTATAAAATATAACT+GGG + chr7_2:81348601-81348620 Msa1081570:intron 15.0%
!!! TGCTGTTTTTTTATATATAT+AGG - chr7_2:81349313-81349332 None:intergenic 15.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_2:81347288-81347307 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_2:81347621-81347640 Msa1081570:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_2:81347622-81347641 Msa1081570:intron 15.0%
!! ATACTCTATAAAATATAACT+GGG + chr7_2:81348601-81348620 Msa1081570:intron 15.0%
!!! TGCTGTTTTTTTATATATAT+AGG - chr7_2:81349313-81349332 None:intergenic 15.0%
!! AAATAGTAGTAAGATTAGAA+TGG - chr7_2:81347231-81347250 None:intergenic 20.0%
!! TCAAAAACTAAATTATCTAG+TGG - chr7_2:81347614-81347633 None:intergenic 20.0%
!!! GTATCTTTTGTTTTCTTAAT+TGG - chr7_2:81347698-81347717 None:intergenic 20.0%
!! ATTAACAAGTGCTATATATA+AGG + chr7_2:81347737-81347756 Msa1081570:intron 20.0%
!! TTAACAAGTGCTATATATAA+GGG + chr7_2:81347738-81347757 Msa1081570:intron 20.0%
!! TAAAAAATTGTAAAAGAAGG+TGG - chr7_2:81347796-81347815 None:intergenic 20.0%
!!! CATGAATTACCTTTTTTTAA+AGG - chr7_2:81348261-81348280 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_2:81348379-81348398 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_2:81348454-81348473 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_2:81348459-81348478 Msa1081570:intron 20.0%
!! CATTTATATTACAAGTATGA+AGG - chr7_2:81348493-81348512 None:intergenic 20.0%
!!! TTTTTAAGAGGTGTAATATT+TGG + chr7_2:81348550-81348569 Msa1081570:intron 20.0%
!!! ATTTTATAGAGTATCGAATT+CGG - chr7_2:81348595-81348614 None:intergenic 20.0%
!! GATACTCTATAAAATATAAC+TGG + chr7_2:81348600-81348619 Msa1081570:intron 20.0%
!! TCATTATTATAGATCAAACT+AGG + chr7_2:81349111-81349130 Msa1081570:CDS 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_2:81349152-81349171 Msa1081570:three_prime_UTR 20.0%
!!! TCCTATTTTATTTTACAAGA+TGG + chr7_2:81349348-81349367 Msa1081570:three_prime_UTR 20.0%
!! ACCATCTTGTAAAATAAAAT+AGG - chr7_2:81349352-81349371 None:intergenic 20.0%
!!! ATTTTATTTTACAAGATGGT+AGG + chr7_2:81349352-81349371 Msa1081570:three_prime_UTR 20.0%
!! AAATAGTAGTAAGATTAGAA+TGG - chr7_2:81347231-81347250 None:intergenic 20.0%
!! TCAAAAACTAAATTATCTAG+TGG - chr7_2:81347614-81347633 None:intergenic 20.0%
!!! GTATCTTTTGTTTTCTTAAT+TGG - chr7_2:81347698-81347717 None:intergenic 20.0%
!! ATTAACAAGTGCTATATATA+AGG + chr7_2:81347737-81347756 Msa1081570:intron 20.0%
!! TTAACAAGTGCTATATATAA+GGG + chr7_2:81347738-81347757 Msa1081570:intron 20.0%
!! TAAAAAATTGTAAAAGAAGG+TGG - chr7_2:81347796-81347815 None:intergenic 20.0%
!!! CATGAATTACCTTTTTTTAA+AGG - chr7_2:81348261-81348280 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_2:81348379-81348398 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_2:81348454-81348473 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_2:81348459-81348478 Msa1081570:intron 20.0%
!! CATTTATATTACAAGTATGA+AGG - chr7_2:81348493-81348512 None:intergenic 20.0%
!!! TTTTTAAGAGGTGTAATATT+TGG + chr7_2:81348550-81348569 Msa1081570:intron 20.0%
!!! ATTTTATAGAGTATCGAATT+CGG - chr7_2:81348595-81348614 None:intergenic 20.0%
!! GATACTCTATAAAATATAAC+TGG + chr7_2:81348600-81348619 Msa1081570:intron 20.0%
!! TCATTATTATAGATCAAACT+AGG + chr7_2:81349111-81349130 Msa1081570:CDS 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_2:81349152-81349171 Msa1081570:three_prime_UTR 20.0%
!!! TCCTATTTTATTTTACAAGA+TGG + chr7_2:81349348-81349367 Msa1081570:three_prime_UTR 20.0%
!! ACCATCTTGTAAAATAAAAT+AGG - chr7_2:81349352-81349371 None:intergenic 20.0%
!!! ATTTTATTTTACAAGATGGT+AGG + chr7_2:81349352-81349371 Msa1081570:three_prime_UTR 20.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_2:81347320-81347339 Msa1081570:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_2:81347321-81347340 Msa1081570:exon 25.0%
! CAATGAGATAAAAGATAATG+TGG - chr7_2:81347919-81347938 None:intergenic 25.0%
! AGATTCAATAAACACTATGT+GGG - chr7_2:81348011-81348030 None:intergenic 25.0%
! AAGATTCAATAAACACTATG+TGG - chr7_2:81348012-81348031 None:intergenic 25.0%
!! GTGATATCTCCTTTAAAAAA+AGG + chr7_2:81348249-81348268 Msa1081570:intron 25.0%
! AATTAACAAATCAAATCAGC+TGG + chr7_2:81348413-81348432 Msa1081570:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_2:81348439-81348458 None:intergenic 25.0%
!!! AAGTAGTGACATTTTTTAAG+AGG + chr7_2:81348538-81348557 Msa1081570:intron 25.0%
!!! ACTTTGAGATTATACTACTT+AGG - chr7_2:81348745-81348764 None:intergenic 25.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_2:81347320-81347339 Msa1081570:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_2:81347321-81347340 Msa1081570:exon 25.0%
! CAATGAGATAAAAGATAATG+TGG - chr7_2:81347919-81347938 None:intergenic 25.0%
! AGATTCAATAAACACTATGT+GGG - chr7_2:81348011-81348030 None:intergenic 25.0%
! AAGATTCAATAAACACTATG+TGG - chr7_2:81348012-81348031 None:intergenic 25.0%
!! GTGATATCTCCTTTAAAAAA+AGG + chr7_2:81348249-81348268 Msa1081570:intron 25.0%
! AATTAACAAATCAAATCAGC+TGG + chr7_2:81348413-81348432 Msa1081570:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_2:81348439-81348458 None:intergenic 25.0%
!!! AAGTAGTGACATTTTTTAAG+AGG + chr7_2:81348538-81348557 Msa1081570:intron 25.0%
!!! ACTTTGAGATTATACTACTT+AGG - chr7_2:81348745-81348764 None:intergenic 25.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_2:81347279-81347298 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_2:81347416-81347435 Msa1081570:CDS 30.0%
!! TTTGTTTTCTTAATTGGTGC+TGG - chr7_2:81347692-81347711 None:intergenic 30.0%
! TATTTGGGATAAAGAGAAGA+TGG - chr7_2:81347892-81347911 None:intergenic 30.0%
AGATAATGTGGCGAATATTT+GGG - chr7_2:81347907-81347926 None:intergenic 30.0%
AAGATAATGTGGCGAATATT+TGG - chr7_2:81347908-81347927 None:intergenic 30.0%
ATATACTTAAGCTTGTGAGT+AGG + chr7_2:81348161-81348180 Msa1081570:intron 30.0%
TATACTTAAGCTTGTGAGTA+GGG + chr7_2:81348162-81348181 Msa1081570:intron 30.0%
ACAATTTCACAAAGATGCAA+TGG + chr7_2:81348289-81348308 Msa1081570:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_2:81348440-81348459 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_2:81348775-81348794 Msa1081570:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_2:81348817-81348836 Msa1081570:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_2:81348895-81348914 Msa1081570:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_2:81348907-81348926 None:intergenic 30.0%
ATAGCAAACTCACTTAATAG+AGG - chr7_2:81349268-81349287 None:intergenic 30.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_2:81347279-81347298 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_2:81347416-81347435 Msa1081570:CDS 30.0%
!! TTTGTTTTCTTAATTGGTGC+TGG - chr7_2:81347692-81347711 None:intergenic 30.0%
! TATTTGGGATAAAGAGAAGA+TGG - chr7_2:81347892-81347911 None:intergenic 30.0%
AGATAATGTGGCGAATATTT+GGG - chr7_2:81347907-81347926 None:intergenic 30.0%
AAGATAATGTGGCGAATATT+TGG - chr7_2:81347908-81347927 None:intergenic 30.0%
ATATACTTAAGCTTGTGAGT+AGG + chr7_2:81348161-81348180 Msa1081570:intron 30.0%
TATACTTAAGCTTGTGAGTA+GGG + chr7_2:81348162-81348181 Msa1081570:intron 30.0%
ACAATTTCACAAAGATGCAA+TGG + chr7_2:81348289-81348308 Msa1081570:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_2:81348440-81348459 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_2:81348775-81348794 Msa1081570:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_2:81348817-81348836 Msa1081570:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_2:81348895-81348914 Msa1081570:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_2:81348907-81348926 None:intergenic 30.0%
ATAGCAAACTCACTTAATAG+AGG - chr7_2:81349268-81349287 None:intergenic 30.0%
TCTATGAGTGAATGAGAGTA+AGG - chr7_2:81347204-81347223 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_2:81347265-81347284 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_2:81347415-81347434 Msa1081570:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_2:81347523-81347542 Msa1081570:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_2:81347524-81347543 Msa1081570:CDS 35.0%
! AGAAAGAGCATATAGTAGAG+AGG - chr7_2:81347589-81347608 None:intergenic 35.0%
!!! TTTTCTTAATTGGTGCTGGT+AGG - chr7_2:81347688-81347707 None:intergenic 35.0%
!!! GCGTGATTTCTCTTTGTTTT+TGG + chr7_2:81348715-81348734 Msa1081570:intron 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_2:81348765-81348784 Msa1081570:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_2:81348791-81348810 Msa1081570:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_2:81348864-81348883 None:intergenic 35.0%
TCTATGAGTGAATGAGAGTA+AGG - chr7_2:81347204-81347223 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_2:81347265-81347284 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_2:81347415-81347434 Msa1081570:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_2:81347523-81347542 Msa1081570:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_2:81347524-81347543 Msa1081570:CDS 35.0%
! AGAAAGAGCATATAGTAGAG+AGG - chr7_2:81347589-81347608 None:intergenic 35.0%
!!! TTTTCTTAATTGGTGCTGGT+AGG - chr7_2:81347688-81347707 None:intergenic 35.0%
!!! GCGTGATTTCTCTTTGTTTT+TGG + chr7_2:81348715-81348734 Msa1081570:intron 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_2:81348765-81348784 Msa1081570:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_2:81348791-81348810 Msa1081570:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_2:81348864-81348883 None:intergenic 35.0%
TGAGTGAATGAGAGTAAGGT+GGG - chr7_2:81347200-81347219 None:intergenic 40.0%
ATGAGTGAATGAGAGTAAGG+TGG - chr7_2:81347201-81347220 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_2:81347344-81347363 Msa1081570:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_2:81347458-81347477 Msa1081570:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_2:81347459-81347478 Msa1081570:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_2:81347465-81347484 Msa1081570:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_2:81347470-81347489 Msa1081570:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_2:81348174-81348193 Msa1081570:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_2:81348845-81348864 Msa1081570:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_2:81349023-81349042 None:intergenic 40.0%
GCTTTGGTCCTATCTATCAT+TGG + chr7_2:81349043-81349062 Msa1081570:CDS 40.0%
CAGTGGAACCAATGATAGAT+AGG - chr7_2:81349054-81349073 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_2:81349071-81349090 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_2:81349069-81349088 Msa1081570:CDS 40.0%
!! GTGAGTTTGCTATGTTCTAG+TGG + chr7_2:81349275-81349294 Msa1081570:three_prime_UTR 40.0%
TGAGTGAATGAGAGTAAGGT+GGG - chr7_2:81347200-81347219 None:intergenic 40.0%
ATGAGTGAATGAGAGTAAGG+TGG - chr7_2:81347201-81347220 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_2:81347344-81347363 Msa1081570:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_2:81347458-81347477 Msa1081570:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_2:81347459-81347478 Msa1081570:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_2:81347465-81347484 Msa1081570:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_2:81347470-81347489 Msa1081570:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_2:81348174-81348193 Msa1081570:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_2:81348845-81348864 Msa1081570:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_2:81349023-81349042 None:intergenic 40.0%
GCTTTGGTCCTATCTATCAT+TGG + chr7_2:81349043-81349062 Msa1081570:CDS 40.0%
CAGTGGAACCAATGATAGAT+AGG - chr7_2:81349054-81349073 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_2:81349071-81349090 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_2:81349069-81349088 Msa1081570:CDS 40.0%
!! GTGAGTTTGCTATGTTCTAG+TGG + chr7_2:81349275-81349294 Msa1081570:three_prime_UTR 40.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_2:81347178-81347197 None:intergenic 45.0%
GAGTGAATGAGAGTAAGGTG+GGG - chr7_2:81347199-81347218 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_2:81347350-81347369 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_2:81347348-81347367 Msa1081570:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_2:81347374-81347393 Msa1081570:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_2:81347423-81347442 Msa1081570:CDS 45.0%
AACTGGGATGTGTGTAGTGT+TGG + chr7_2:81348617-81348636 Msa1081570:intron 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_2:81348917-81348936 Msa1081570:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_2:81349027-81349046 Msa1081570:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_2:81349081-81349100 None:intergenic 45.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_2:81347178-81347197 None:intergenic 45.0%
GAGTGAATGAGAGTAAGGTG+GGG - chr7_2:81347199-81347218 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_2:81347350-81347369 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_2:81347348-81347367 Msa1081570:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_2:81347374-81347393 Msa1081570:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_2:81347423-81347442 Msa1081570:CDS 45.0%
AACTGGGATGTGTGTAGTGT+TGG + chr7_2:81348617-81348636 Msa1081570:intron 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_2:81348917-81348936 Msa1081570:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_2:81349027-81349046 Msa1081570:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_2:81349081-81349100 None:intergenic 45.0%
!! TATAATATGTTAATTAATAA+CGG + chr7_2:81348050-81348069 Msa1081570:intron 5.0%
!!! TTGTTTTTTTTATTAAATAT+AGG + chr7_2:81349221-81349240 Msa1081570:three_prime_UTR 5.0%
!! TATAATATGTTAATTAATAA+CGG + chr7_2:81348050-81348069 Msa1081570:intron 5.0%
!!! TTGTTTTTTTTATTAAATAT+AGG + chr7_2:81349221-81349240 Msa1081570:three_prime_UTR 5.0%
TGAATGAGAGTAAGGTGGGG+AGG - chr7_2:81347196-81347215 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_2:81347368-81347387 Msa1081570:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_2:81347479-81347498 Msa1081570:CDS 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_2:81348953-81348972 Msa1081570:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_2:81348972-81348991 Msa1081570:CDS 50.0%
TGAATGAGAGTAAGGTGGGG+AGG - chr7_2:81347196-81347215 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_2:81347368-81347387 Msa1081570:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_2:81347479-81347498 Msa1081570:CDS 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_2:81348953-81348972 Msa1081570:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_2:81348972-81348991 Msa1081570:CDS 50.0%
TGAGAGTAAGGTGGGGAGGT+TGG - chr7_2:81347192-81347211 None:intergenic 55.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_2:81348926-81348945 Msa1081570:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_2:81348935-81348954 Msa1081570:CDS 55.0%
TGAGAGTAAGGTGGGGAGGT+TGG - chr7_2:81347192-81347211 None:intergenic 55.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_2:81348926-81348945 Msa1081570:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_2:81348935-81348954 Msa1081570:CDS 55.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_2:81348936-81348955 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_2:81348934-81348953 Msa1081570:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_2:81348944-81348963 Msa1081570:CDS 60.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_2:81348936-81348955 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_2:81348934-81348953 Msa1081570:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_2:81348944-81348963 Msa1081570:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81347150 81349381 81347150 ID=Msa1081570;Name=Msa1081570
chr7_2 mRNA 81347150 81349381 81347150 ID=Msa1081570-mRNA-1;Parent=Msa1081570;Name=Msa1081570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|1|1|2|249|190
chr7_2 exon 81347150 81347565 81347150 ID=Msa1081570-mRNA-1:exon:20811;Parent=Msa1081570-mRNA-1
chr7_2 exon 81348787 81349381 81348787 ID=Msa1081570-mRNA-1:exon:20812;Parent=Msa1081570-mRNA-1
chr7_2 five_prime_UTR 81347150 81347338 81347150 ID=Msa1081570-mRNA-1:five_prime_utr;Parent=Msa1081570-mRNA-1
chr7_2 CDS 81347339 81347565 81347339 ID=Msa1081570-mRNA-1:cds;Parent=Msa1081570-mRNA-1
chr7_2 CDS 81348787 81349132 81348787 ID=Msa1081570-mRNA-1:cds;Parent=Msa1081570-mRNA-1
chr7_2 three_prime_UTR 81349133 81349381 81349133 ID=Msa1081570-mRNA-1:three_prime_utr;Parent=Msa1081570-mRNA-1
Gene Sequence

>Msa1081570

ATGGGAAACCAGTCAAAGACAAGTGTGGATGGAGTTCACAGCGATGTGAAGGTTATGGAGATGAGAACTAGAAGTAGTGTTTATGATGTGTTGCTTAGGGTTCTTGGTTTCTTGCTTACTCTCACTGCTACTATCATTGTGGGTTTTGGCAAGGAGACTAAGGTCATTTCATATGCTTCATTGCAATTCAAAGCTACTGCTAAGTGGGAATATATGTCTGCTATTGTGTTTTTCTTGGTGACAAATGCTATAGGATGTTCATATGCTGCAATTTCTATGGTGATTTCAACAATTGCAAGAACCAGTGGAAATAAAACAGCACTATTGATGATAACAATGCTAGACCTAGTTATAATGGCATTACTCTTCTCAGCCAATGGAGCTGCTGGTGCAGTGGGAGTGTTAGGACAGAAAGGAAACTCGCACGTGCAATGGATGAAAGTGTGCAATGTATTTGATGCCTATTGTCGTCACATGACTGTTGCTTTGGTCCTATCTATCATTGGTTCCACTGTCTTCCTTTTACTTGTGGCTCACTCTCTTTTCAAACTTCATTATTATAGATCAAACTAG

Protein sequence

>Msa1081570

MGNQSKTSVDGVHSDVKVMEMRTRSSVYDVLLRVLGFLLTLTATIIVGFGKETKVISYASLQFKATAKWEYMSAIVFFLVTNAIGCSYAAISMVISTIARTSGNKTALLMITMLDLVIMALLFSANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRHMTVALVLSIIGSTVFLLLVAHSLFKLHYYRSN*