Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137150 | XP_013470146.1 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.47e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137150 | sp|Q8RYC6|IAA32_ARATH | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.24e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137150 | A0A072VQ82 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 1.66e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0137150 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043210 | Msa0137150 | 0.951379 | 2.312067e-109 | -8.615850e-47 |
| Msa0050040 | Msa0137150 | 0.836857 | 7.317494e-57 | -8.615850e-47 |
| Msa0053110 | Msa0137150 | 0.814188 | 1.749676e-51 | -8.615850e-47 |
| Msa0073670 | Msa0137150 | 0.800649 | 1.305514e-48 | -8.615850e-47 |
| Msa0098440 | Msa0137150 | 0.814035 | 1.891265e-51 | -8.615850e-47 |
| Msa0102990 | Msa0137150 | 0.837225 | 5.894285e-57 | -8.615850e-47 |
| Msa0137150 | Msa0182340 | 0.862369 | 5.321694e-64 | -8.615850e-47 |
| Msa0137150 | Msa0194280 | 0.807298 | 5.411658e-50 | -8.615850e-47 |
| Msa0137150 | Msa0219190 | 0.819935 | 8.943063e-53 | -8.615850e-47 |
| Msa0137150 | Msa0235980 | 0.802422 | 5.653404e-49 | -8.615850e-47 |
| Msa0137150 | Msa0298240 | 0.822624 | 2.144237e-53 | -8.615850e-47 |
| Msa0137150 | Msa0314480 | 0.810839 | 9.442372e-51 | -8.615850e-47 |
| Msa0137150 | Msa0344570 | 0.815352 | 9.659934e-52 | -8.615850e-47 |
| Msa0137150 | Msa0359250 | 0.818246 | 2.166801e-52 | -8.615850e-47 |
| Msa0137150 | Msa0361260 | 0.824418 | 8.159689e-54 | -8.615850e-47 |
| Msa0137150 | Msa0370600 | 0.808390 | 3.171652e-50 | -8.615850e-47 |
| Msa0137150 | Msa0392490 | 0.812085 | 5.062616e-51 | -8.615850e-47 |
| Msa0137150 | Msa0408630 | 0.800884 | 1.168946e-48 | -8.615850e-47 |
| Msa0137150 | Msa0408640 | 0.829112 | 6.174701e-55 | -8.615850e-47 |
| Msa0137150 | Msa0418200 | 0.827696 | 1.356878e-54 | -8.615850e-47 |
| Msa0137150 | Msa0436500 | 0.838863 | 2.233687e-57 | -8.615850e-47 |
| Msa0137150 | Msa0453520 | 0.819054 | 1.420306e-52 | -8.615850e-47 |
| Msa0137150 | Msa0464540 | 0.817119 | 3.890214e-52 | -8.615850e-47 |
| Msa0137150 | Msa0487630 | 0.817376 | 3.406004e-52 | -8.615850e-47 |
| Msa0137150 | Msa0537920 | 0.854054 | 1.588978e-61 | -8.615850e-47 |
| Msa0137150 | Msa0538220 | 0.847519 | 1.098967e-59 | -8.615850e-47 |
| Msa0137150 | Msa0641250 | 0.808671 | 2.761663e-50 | -8.615850e-47 |
| Msa0137150 | Msa0680150 | 0.818315 | 2.089832e-52 | -8.615850e-47 |
| Msa0137150 | Msa0688500 | 0.838866 | 2.229894e-57 | -8.615850e-47 |
| Msa0137150 | Msa0692840 | 0.800620 | 1.323200e-48 | -8.615850e-47 |
| Msa0137150 | Msa0747780 | 0.811660 | 6.265564e-51 | -8.615850e-47 |
| Msa0137150 | Msa0757870 | 0.804055 | 2.596173e-49 | -8.615850e-47 |
| Msa0137150 | Msa0761580 | 0.809358 | 1.968920e-50 | -8.615850e-47 |
| Msa0137150 | Msa0867350 | 0.808064 | 3.720380e-50 | -8.615850e-47 |
| Msa0137150 | Msa0872310 | 0.848599 | 5.531176e-60 | -8.615850e-47 |
| Msa0137150 | Msa0885060 | 0.800043 | 1.734048e-48 | -8.615850e-47 |
| Msa0137150 | Msa0898730 | 0.807376 | 5.210557e-50 | -8.615850e-47 |
| Msa0137150 | Msa0905550 | 0.825612 | 4.262059e-54 | -8.615850e-47 |
| Msa0137150 | Msa0936340 | 0.824239 | 8.990985e-54 | -8.615850e-47 |
| Msa0137150 | Msa0937550 | 0.840354 | 9.144514e-58 | -8.615850e-47 |
| Msa0137150 | Msa0979510 | 0.827044 | 1.943934e-54 | -8.615850e-47 |
| Msa0137150 | Msa1013770 | 0.800794 | 1.219204e-48 | -8.615850e-47 |
| Msa0137150 | Msa1032450 | 0.833672 | 4.662332e-56 | -8.615850e-47 |
| Msa0137150 | Msa1037900 | 0.821481 | 3.947312e-53 | -8.615850e-47 |
| Msa0137150 | Msa1037910 | 0.817272 | 3.593058e-52 | -8.615850e-47 |
| Msa0137150 | Msa1041530 | 0.866499 | 2.725854e-65 | -8.615850e-47 |
| Msa0137150 | Msa1042670 | 0.820512 | 6.596249e-53 | -8.615850e-47 |
| Msa0137150 | Msa1061500 | 0.829912 | 3.947756e-55 | -8.615850e-47 |
| Msa0137150 | Msa1081570 | 0.866351 | 3.038965e-65 | -8.615850e-47 |
| Msa0137150 | Msa1123880 | 0.829698 | 4.450300e-55 | -8.615850e-47 |
| Msa0137150 | Msa1127140 | 0.885559 | 7.327994e-72 | -8.615850e-47 |
| Msa0137150 | Msa1129960 | 0.849585 | 2.942679e-60 | -8.615850e-47 |
| Msa0137150 | Msa1129970 | 0.814849 | 1.249105e-51 | -8.615850e-47 |
| Msa0137150 | Msa1134110 | 0.817069 | 3.992955e-52 | -8.615850e-47 |
| Msa0137150 | Msa1166400 | 0.863395 | 2.567722e-64 | -8.615850e-47 |
| Msa0137150 | Msa1169990 | 0.860842 | 1.558142e-63 | -8.615850e-47 |
| Msa0137150 | Msa1176160 | 0.819614 | 1.058804e-52 | -8.615850e-47 |
| Msa0137150 | Msa1201160 | 0.825094 | 5.654463e-54 | -8.615850e-47 |
| Msa0137150 | Msa1227220 | 0.810358 | 1.199140e-50 | -8.615850e-47 |
| Msa0137150 | Msa1251160 | 0.813820 | 2.109321e-51 | -8.615850e-47 |
| Msa0137150 | Msa1272330 | 0.804796 | 1.818516e-49 | -8.615850e-47 |
| Msa0137150 | Msa1307190 | 0.802654 | 5.063374e-49 | -8.615850e-47 |
| Msa0137150 | Msa1355400 | 0.819380 | 1.197109e-52 | -8.615850e-47 |
| Msa0137150 | Msa1414930 | 0.800196 | 1.614546e-48 | -8.615850e-47 |
| Msa0137150 | Msa1419490 | 0.900914 | 4.542997e-78 | -8.615850e-47 |
| Msa0137150 | Msa1420060 | 0.835579 | 1.546028e-56 | -8.615850e-47 |
| Msa0137150 | Msa1421550 | 0.865781 | 4.601787e-65 | -8.615850e-47 |
| Msa0137150 | Msa1423700 | 0.882984 | 6.583004e-71 | -8.615850e-47 |
| Msa0137150 | Msa1461060 | 0.832208 | 1.078020e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137150 | MtrunA17_Chr1g0209181 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.19e-126 | 352 |
| Msa0137150 | MtrunA17_Chr1g0183251 | 40.385 | 104 | 43 | 2 | 89 | 173 | 146 | 249 | 5.02e-17 | 76.6 |
| Msa0137150 | MtrunA17_Chr5g0428141 | 32.653 | 147 | 77 | 4 | 44 | 173 | 187 | 328 | 3.61e-16 | 75.1 |
| Msa0137150 | MtrunA17_Chr1g0193861 | 42.697 | 89 | 49 | 1 | 90 | 176 | 85 | 173 | 1.53e-15 | 70.9 |
| Msa0137150 | MtrunA17_Chr1g0166011 | 36.879 | 141 | 65 | 5 | 39 | 173 | 53 | 175 | 4.45e-15 | 69.7 |
| Msa0137150 | MtrunA17_Chr4g0069561 | 31.544 | 149 | 83 | 4 | 29 | 176 | 53 | 183 | 1.11e-14 | 68.6 |
| Msa0137150 | MtrunA17_Chr3g0137601 | 27.737 | 137 | 93 | 2 | 39 | 173 | 74 | 206 | 1.48e-14 | 68.9 |
| Msa0137150 | MtrunA17_Chr6g0486121 | 34.459 | 148 | 71 | 5 | 46 | 173 | 94 | 235 | 1.95e-14 | 69.3 |
| Msa0137150 | MtrunA17_Chr7g0270851 | 43.023 | 86 | 47 | 1 | 90 | 173 | 70 | 155 | 2.31e-14 | 67.4 |
| Msa0137150 | MtrunA17_Chr5g0411501 | 29.412 | 136 | 79 | 3 | 54 | 173 | 182 | 316 | 4.49e-14 | 68.9 |
| Msa0137150 | MtrunA17_Chr1g0187961 | 36.290 | 124 | 59 | 4 | 54 | 173 | 64 | 171 | 4.39e-13 | 64.3 |
| Msa0137150 | MtrunA17_Chr8g0340731 | 37.624 | 101 | 46 | 2 | 90 | 173 | 157 | 257 | 7.51e-13 | 65.1 |
| Msa0137150 | MtrunA17_Chr8g0366881 | 31.081 | 148 | 76 | 5 | 46 | 173 | 188 | 329 | 8.69e-13 | 65.5 |
| Msa0137150 | MtrunA17_Chr2g0331411 | 30.612 | 147 | 83 | 4 | 44 | 173 | 163 | 307 | 1.18e-12 | 65.1 |
| Msa0137150 | MtrunA17_Chr4g0064131 | 28.226 | 124 | 80 | 3 | 51 | 173 | 90 | 205 | 3.14e-12 | 62.4 |
| Msa0137150 | MtrunA17_Chr8g0390281 | 27.879 | 165 | 88 | 4 | 37 | 173 | 113 | 274 | 8.63e-12 | 62.4 |
| Msa0137150 | MtrunA17_Chr1g0190711 | 32.374 | 139 | 73 | 4 | 54 | 173 | 98 | 234 | 1.23e-11 | 61.6 |
| Msa0137150 | MtrunA17_Chr2g0330951 | 34.951 | 103 | 48 | 2 | 90 | 173 | 149 | 251 | 3.37e-11 | 60.5 |
| Msa0137150 | MtrunA17_Chr7g0260621 | 33.058 | 121 | 70 | 3 | 54 | 173 | 84 | 194 | 8.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0137150 | AT2G01200.2 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0137150 | AT2G01200.1 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0137150 | AT1G15050.2 | 47.429 | 175 | 64 | 2 | 1 | 175 | 1 | 147 | 3.02e-51 | 162 |
| Msa0137150 | AT1G15050.1 | 47.429 | 175 | 64 | 2 | 1 | 175 | 33 | 179 | 5.54e-51 | 162 |
| Msa0137150 | AT2G33310.3 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0137150 | AT2G33310.1 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0137150 | AT2G33310.2 | 44.681 | 94 | 42 | 1 | 90 | 173 | 131 | 224 | 1.80e-20 | 85.9 |
| Msa0137150 | AT1G04550.2 | 45.556 | 90 | 42 | 1 | 89 | 171 | 125 | 214 | 3.17e-19 | 82.4 |
| Msa0137150 | AT4G28640.3 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.18e-14 | 68.9 |
| Msa0137150 | AT4G28640.1 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.26e-14 | 68.9 |
| Msa0137150 | AT4G28640.2 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 8.15e-14 | 68.6 |
| Msa0137150 | AT3G62100.1 | 43.529 | 85 | 47 | 1 | 90 | 173 | 84 | 168 | 1.15e-13 | 66.2 |
| Msa0137150 | AT1G52830.1 | 37.634 | 93 | 57 | 1 | 83 | 175 | 88 | 179 | 1.40e-13 | 66.2 |
| Msa0137150 | AT2G46990.1 | 41.111 | 90 | 52 | 1 | 90 | 178 | 86 | 175 | 1.93e-13 | 65.5 |
| Msa0137150 | AT3G17600.1 | 33.884 | 121 | 66 | 3 | 56 | 174 | 47 | 155 | 2.33e-13 | 65.1 |
| Msa0137150 | AT3G15540.1 | 39.773 | 88 | 51 | 2 | 89 | 175 | 97 | 183 | 1.50e-12 | 63.5 |
| Msa0137150 | AT3G16500.1 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 3.91e-12 | 63.5 |
| Msa0137150 | AT3G16500.2 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 4.25e-12 | 63.2 |
| Msa0137150 | AT2G22670.5 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0137150 | AT2G22670.2 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0137150 | AT2G22670.3 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0137150 | AT2G22670.1 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0137150 | AT2G22670.4 | 28.302 | 159 | 90 | 6 | 37 | 173 | 161 | 317 | 7.53e-12 | 63.2 |
| Msa0137150 | AT1G51950.1 | 34.343 | 99 | 48 | 2 | 90 | 173 | 151 | 247 | 8.60e-12 | 62.4 |
| Msa0137150 | AT5G25890.1 | 33.708 | 89 | 54 | 1 | 90 | 178 | 82 | 165 | 9.44e-12 | 60.8 |
| Msa0137150 | AT1G04240.1 | 32.258 | 124 | 70 | 3 | 54 | 173 | 65 | 178 | 2.88e-11 | 60.1 |
| Msa0137150 | AT4G29080.1 | 30.000 | 160 | 89 | 6 | 37 | 173 | 127 | 286 | 3.72e-11 | 60.8 |
| Msa0137150 | AT1G04240.2 | 32.258 | 124 | 70 | 3 | 54 | 173 | 165 | 278 | 4.50e-11 | 60.5 |
| Msa0137150 | AT5G65670.1 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.20e-11 | 60.8 |
| Msa0137150 | AT5G65670.2 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.32e-11 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTCTTCCATGTGCTTT+TGG | 0.186139 | 1_3:+69468874 | None:intergenic |
| GTGCTTGAATTCTTCATATT+AGG | 0.248292 | 1_3:-69469599 | None:intergenic |
| GGTATAAGATTATTTCAATC+TGG | 0.393434 | 1_3:+69470070 | Msa0137150:CDS |
| AAAATTTGTATTCTTGATCA+TGG | 0.399284 | 1_3:+69469734 | Msa0137150:CDS |
| TTGTAAAGGCAAGTCCTTCA+TGG | 0.402501 | 1_3:+69470449 | Msa0137150:three_prime_UTR |
| ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | 1_3:+69469090 | Msa0137150:CDS |
| TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | 1_3:+69470049 | Msa0137150:intron |
| AGTGTATGATGATGACCTTA+TGG | 0.418403 | 1_3:+69469571 | Msa0137150:intron |
| ATTCAATTAGAAGACATGTT+TGG | 0.424570 | 1_3:+69469776 | Msa0137150:CDS |
| AAACTTTGATGAAGAGATAG+AGG | 0.443595 | 1_3:+69469646 | Msa0137150:CDS |
| ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | 1_3:+69470113 | Msa0137150:CDS |
| ATCTTATACCAGATACTGAT+TGG | 0.459323 | 1_3:-69470057 | None:intergenic |
| TCATATTAGGCCAATCCATA+AGG | 0.461452 | 1_3:-69469586 | None:intergenic |
| AAACATGTCTTCTAATTGAA+TGG | 0.463927 | 1_3:-69469774 | None:intergenic |
| CTAGATGAATTTGAGTCCAT+TGG | 0.479109 | 1_3:-69469003 | None:intergenic |
| GATGATGGCATAATTGATCT+TGG | 0.492063 | 1_3:+69469078 | Msa0137150:CDS |
| AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | 1_3:-69469673 | None:intergenic |
| ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | 1_3:+69469696 | Msa0137150:CDS |
| TATGTGAAGGTTAACATGGA+TGG | 0.499449 | 1_3:+69469695 | Msa0137150:CDS |
| TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | 1_3:+69470272 | Msa0137150:CDS |
| GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | 1_3:+69469670 | Msa0137150:CDS |
| GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | 1_3:+69469669 | Msa0137150:CDS |
| AACATGGATGGGGTCTCCAT+TGG | 0.556874 | 1_3:+69469707 | Msa0137150:CDS |
| TATCAGGACAAACATGATGA+TGG | 0.557533 | 1_3:+69469063 | Msa0137150:CDS |
| AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | 1_3:+69470266 | Msa0137150:CDS |
| AACTTTGATGAAGAGATAGA+GGG | 0.577407 | 1_3:+69469647 | Msa0137150:CDS |
| GGATGAACACATACTTCCAC+AGG | 0.585852 | 1_3:-69470153 | None:intergenic |
| AGGATAGTGAAGACAATTGG+AGG | 0.586064 | 1_3:+69470116 | Msa0137150:CDS |
| GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | 1_3:+69470137 | Msa0137150:CDS |
| TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | 1_3:+69469711 | Msa0137150:CDS |
| GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | 1_3:+69469691 | Msa0137150:CDS |
| AGGATTGCAAGAAAGAATGC+AGG | 0.603908 | 1_3:+69470292 | Msa0137150:CDS |
| TGTGAAGGTTAACATGGATG+GGG | 0.610516 | 1_3:+69469697 | Msa0137150:CDS |
| AGGACATTATATCATACCAA+TGG | 0.612781 | 1_3:+69468987 | Msa0137150:exon |
| AGAGTACTCATTATTCTACA+AGG | 0.631045 | 1_3:+69470096 | Msa0137150:CDS |
| ATGATGATGACCTTATGGAT+TGG | 0.632385 | 1_3:+69469576 | Msa0137150:CDS |
| TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | 1_3:+69469682 | Msa0137150:CDS |
| GTGGAAATTCCAAAAGCACA+TGG | 0.637670 | 1_3:-69468883 | None:intergenic |
| GAAGACAATTGGAGGACTGT+TGG | 0.640837 | 1_3:+69470124 | Msa0137150:CDS |
| ATTTGTATTCTTGATCATGG+AGG | 0.642489 | 1_3:+69469737 | Msa0137150:CDS |
| ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | 1_3:+69469648 | Msa0137150:CDS |
| CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | 1_3:+69469649 | Msa0137150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTATATATACTAGT+TGG | + | chr1_3:69470199-69470218 | Msa0137150:intron | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | chr1_3:69470199-69470218 | Msa0137150:intron | 10.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | chr1_3:69469230-69469249 | None:intergenic | 15.0% |
| !!! | GTAAAACTTTTTAAAATGAT+GGG | - | chr1_3:69469231-69469250 | None:intergenic | 15.0% |
| !!! | TGTAAAACTTTTTAAAATGA+TGG | - | chr1_3:69469232-69469251 | None:intergenic | 15.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | chr1_3:69469230-69469249 | None:intergenic | 15.0% |
| !!! | GTAAAACTTTTTAAAATGAT+GGG | - | chr1_3:69469231-69469250 | None:intergenic | 15.0% |
| !!! | TGTAAAACTTTTTAAAATGA+TGG | - | chr1_3:69469232-69469251 | None:intergenic | 15.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | chr1_3:69468905-69468924 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | chr1_3:69469167-69469186 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | chr1_3:69469168-69469187 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1_3:69469229-69469248 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1_3:69469449-69469468 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | chr1_3:69469734-69469753 | Msa0137150:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1_3:69470177-69470196 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1_3:69470178-69470197 | None:intergenic | 20.0% |
| !!! | TTTGTAATGTTTTGTTAACA+GGG | + | chr1_3:69470243-69470262 | Msa0137150:intron | 20.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | chr1_3:69468905-69468924 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | chr1_3:69469167-69469186 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | chr1_3:69469168-69469187 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | chr1_3:69469229-69469248 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | chr1_3:69469449-69469468 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | chr1_3:69469734-69469753 | Msa0137150:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | chr1_3:69470177-69470196 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | chr1_3:69470178-69470197 | None:intergenic | 20.0% |
| !!! | TTTGTAATGTTTTGTTAACA+GGG | + | chr1_3:69470243-69470262 | Msa0137150:intron | 20.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | chr1_3:69469166-69469185 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | chr1_3:69469196-69469215 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | chr1_3:69469379-69469398 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | chr1_3:69469544-69469563 | Msa0137150:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | chr1_3:69469726-69469745 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | chr1_3:69469777-69469796 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | chr1_3:69469776-69469795 | Msa0137150:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | chr1_3:69470018-69470037 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | chr1_3:69470070-69470089 | Msa0137150:CDS | 25.0% |
| !!! | GTTTGTAATGTTTTGTTAAC+AGG | + | chr1_3:69470242-69470261 | Msa0137150:intron | 25.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | chr1_3:69469166-69469185 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | chr1_3:69469196-69469215 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | chr1_3:69469379-69469398 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | chr1_3:69469544-69469563 | Msa0137150:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | chr1_3:69469726-69469745 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | chr1_3:69469777-69469796 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | chr1_3:69469776-69469795 | Msa0137150:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | chr1_3:69470018-69470037 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | chr1_3:69470070-69470089 | Msa0137150:CDS | 25.0% |
| !!! | GTTTGTAATGTTTTGTTAAC+AGG | + | chr1_3:69470242-69470261 | Msa0137150:intron | 25.0% |
| TGAAAAAGTTTAGTGGTCAA+TGG | - | chr1_3:69468966-69468985 | None:intergenic | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | chr1_3:69468967-69468986 | Msa0137150:five_prime_UTR | 30.0% |
| TGTCCTATGAAAAAGTTTAG+TGG | - | chr1_3:69468973-69468992 | None:intergenic | 30.0% | |
| AGGACATTATATCATACCAA+TGG | + | chr1_3:69468987-69469006 | Msa0137150:exon | 30.0% | |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | chr1_3:69469047-69469066 | Msa0137150:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | chr1_3:69469470-69469489 | Msa0137150:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | chr1_3:69469602-69469621 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1_3:69469643-69469662 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | chr1_3:69469646-69469665 | Msa0137150:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | chr1_3:69469647-69469666 | Msa0137150:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | chr1_3:69469737-69469756 | Msa0137150:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | chr1_3:69469844-69469863 | Msa0137150:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | chr1_3:69469960-69469979 | Msa0137150:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | chr1_3:69470031-69470050 | Msa0137150:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | chr1_3:69470060-69470079 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | chr1_3:69470096-69470115 | Msa0137150:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | chr1_3:69470266-69470285 | Msa0137150:CDS | 30.0% | |
| !!! | ATTGTTTTGATGACTTTCTG+TGG | + | chr1_3:69470357-69470376 | Msa0137150:three_prime_UTR | 30.0% |
| GCATCAAGTATTACATTACA+TGG | - | chr1_3:69470400-69470419 | None:intergenic | 30.0% | |
| TGAAAAAGTTTAGTGGTCAA+TGG | - | chr1_3:69468966-69468985 | None:intergenic | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | chr1_3:69468967-69468986 | Msa0137150:five_prime_UTR | 30.0% |
| TGTCCTATGAAAAAGTTTAG+TGG | - | chr1_3:69468973-69468992 | None:intergenic | 30.0% | |
| AGGACATTATATCATACCAA+TGG | + | chr1_3:69468987-69469006 | Msa0137150:exon | 30.0% | |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | chr1_3:69469047-69469066 | Msa0137150:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | chr1_3:69469470-69469489 | Msa0137150:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | chr1_3:69469602-69469621 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | chr1_3:69469643-69469662 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | chr1_3:69469646-69469665 | Msa0137150:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | chr1_3:69469647-69469666 | Msa0137150:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | chr1_3:69469737-69469756 | Msa0137150:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | chr1_3:69469844-69469863 | Msa0137150:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | chr1_3:69469960-69469979 | Msa0137150:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | chr1_3:69470031-69470050 | Msa0137150:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | chr1_3:69470060-69470079 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | chr1_3:69470096-69470115 | Msa0137150:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | chr1_3:69470266-69470285 | Msa0137150:CDS | 30.0% | |
| !!! | ATTGTTTTGATGACTTTCTG+TGG | + | chr1_3:69470357-69470376 | Msa0137150:three_prime_UTR | 30.0% |
| GCATCAAGTATTACATTACA+TGG | - | chr1_3:69470400-69470419 | None:intergenic | 30.0% | |
| CTAGATGAATTTGAGTCCAT+TGG | - | chr1_3:69469006-69469025 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | chr1_3:69469063-69469082 | Msa0137150:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | chr1_3:69469078-69469097 | Msa0137150:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1_3:69469090-69469109 | Msa0137150:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | chr1_3:69469571-69469590 | Msa0137150:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | chr1_3:69469576-69469595 | Msa0137150:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | chr1_3:69469589-69469608 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | chr1_3:69469648-69469667 | Msa0137150:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | chr1_3:69469695-69469714 | Msa0137150:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | chr1_3:69469696-69469715 | Msa0137150:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | chr1_3:69469812-69469831 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | chr1_3:69469853-69469872 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | chr1_3:69470113-69470132 | Msa0137150:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | chr1_3:69470272-69470291 | Msa0137150:CDS | 35.0% | |
| !! | TGCGCTGTTTTAGATTGTAA+AGG | + | chr1_3:69470435-69470454 | Msa0137150:three_prime_UTR | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | - | chr1_3:69469006-69469025 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | chr1_3:69469063-69469082 | Msa0137150:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | chr1_3:69469078-69469097 | Msa0137150:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | chr1_3:69469090-69469109 | Msa0137150:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | chr1_3:69469571-69469590 | Msa0137150:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | chr1_3:69469576-69469595 | Msa0137150:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | chr1_3:69469589-69469608 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | chr1_3:69469648-69469667 | Msa0137150:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | chr1_3:69469695-69469714 | Msa0137150:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | chr1_3:69469696-69469715 | Msa0137150:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | chr1_3:69469812-69469831 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | chr1_3:69469853-69469872 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | chr1_3:69470113-69470132 | Msa0137150:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | chr1_3:69470272-69470291 | Msa0137150:CDS | 35.0% | |
| !! | TGCGCTGTTTTAGATTGTAA+AGG | + | chr1_3:69470435-69470454 | Msa0137150:three_prime_UTR | 35.0% |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | chr1_3:69468886-69468905 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | chr1_3:69469649-69469668 | Msa0137150:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | chr1_3:69469691-69469710 | Msa0137150:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | chr1_3:69469697-69469716 | Msa0137150:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | chr1_3:69469971-69469990 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | chr1_3:69470046-69470065 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | chr1_3:69470047-69470066 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | chr1_3:69470116-69470135 | Msa0137150:CDS | 40.0% | |
| AGGATTGCAAGAAAGAATGC+AGG | + | chr1_3:69470292-69470311 | Msa0137150:CDS | 40.0% | |
| TTGTAAAGGCAAGTCCTTCA+TGG | + | chr1_3:69470449-69470468 | Msa0137150:three_prime_UTR | 40.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | chr1_3:69468886-69468905 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | chr1_3:69469649-69469668 | Msa0137150:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | chr1_3:69469691-69469710 | Msa0137150:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | chr1_3:69469697-69469716 | Msa0137150:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | chr1_3:69469971-69469990 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | chr1_3:69470046-69470065 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | chr1_3:69470047-69470066 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | chr1_3:69470116-69470135 | Msa0137150:CDS | 40.0% | |
| AGGATTGCAAGAAAGAATGC+AGG | + | chr1_3:69470292-69470311 | Msa0137150:CDS | 40.0% | |
| TTGTAAAGGCAAGTCCTTCA+TGG | + | chr1_3:69470449-69470468 | Msa0137150:three_prime_UTR | 40.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1_3:69469682-69469701 | Msa0137150:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | chr1_3:69470049-69470068 | Msa0137150:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | chr1_3:69470124-69470143 | Msa0137150:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | chr1_3:69470156-69470175 | None:intergenic | 45.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | chr1_3:69469682-69469701 | Msa0137150:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | chr1_3:69470049-69470068 | Msa0137150:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | chr1_3:69470124-69470143 | Msa0137150:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | chr1_3:69470156-69470175 | None:intergenic | 45.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | + | chr1_3:69469670-69469689 | Msa0137150:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | chr1_3:69469676-69469695 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | chr1_3:69469707-69469726 | Msa0137150:CDS | 50.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | + | chr1_3:69469670-69469689 | Msa0137150:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | chr1_3:69469676-69469695 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | chr1_3:69469707-69469726 | Msa0137150:CDS | 50.0% | |
| GGGTCCAGAGCAATGAGAGA+TGG | + | chr1_3:69469669-69469688 | Msa0137150:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | chr1_3:69469711-69469730 | Msa0137150:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1_3:69470137-69470156 | Msa0137150:CDS | 55.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | + | chr1_3:69469669-69469688 | Msa0137150:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | chr1_3:69469711-69469730 | Msa0137150:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | chr1_3:69470137-69470156 | Msa0137150:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 69468875 | 69470480 | 69468875 | ID=Msa0137150;Name=Msa0137150 |
| chr1_3 | mRNA | 69468875 | 69470480 | 69468875 | ID=Msa0137150-mRNA-1;Parent=Msa0137150;Name=Msa0137150-mRNA-1;_AED=0.16;_eAED=0.16;_QI=131|1|1|1|0.75|0.6|5|124|183 |
| chr1_3 | exon | 69468875 | 69469150 | 69468875 | ID=Msa0137150-mRNA-1:exon:23978;Parent=Msa0137150-mRNA-1 |
| chr1_3 | exon | 69469573 | 69469797 | 69469573 | ID=Msa0137150-mRNA-1:exon:23979;Parent=Msa0137150-mRNA-1 |
| chr1_3 | exon | 69470053 | 69470161 | 69470053 | ID=Msa0137150-mRNA-1:exon:23980;Parent=Msa0137150-mRNA-1 |
| chr1_3 | exon | 69470264 | 69470392 | 69470264 | ID=Msa0137150-mRNA-1:exon:23981;Parent=Msa0137150-mRNA-1 |
| chr1_3 | exon | 69470413 | 69470480 | 69470413 | ID=Msa0137150-mRNA-1:exon:23982;Parent=Msa0137150-mRNA-1 |
| chr1_3 | five_prime_UTR | 69468875 | 69469005 | 69468875 | ID=Msa0137150-mRNA-1:five_prime_utr;Parent=Msa0137150-mRNA-1 |
| chr1_3 | CDS | 69469006 | 69469150 | 69469006 | ID=Msa0137150-mRNA-1:cds;Parent=Msa0137150-mRNA-1 |
| chr1_3 | CDS | 69469573 | 69469797 | 69469573 | ID=Msa0137150-mRNA-1:cds;Parent=Msa0137150-mRNA-1 |
| chr1_3 | CDS | 69470053 | 69470161 | 69470053 | ID=Msa0137150-mRNA-1:cds;Parent=Msa0137150-mRNA-1 |
| chr1_3 | CDS | 69470264 | 69470336 | 69470264 | ID=Msa0137150-mRNA-1:cds;Parent=Msa0137150-mRNA-1 |
| chr1_3 | three_prime_UTR | 69470337 | 69470392 | 69470337 | ID=Msa0137150-mRNA-1:three_prime_utr;Parent=Msa0137150-mRNA-1 |
| chr1_3 | three_prime_UTR | 69470413 | 69470480 | 69470413 | ID=Msa0137150-mRNA-1:three_prime_utr;Parent=Msa0137150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
