Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419490 | sp|Q8RYC6|IAA32_ARATH | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.24e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419490 | A0A072VQ82 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 1.66e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1419490 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa1419490 | 0.815130 | 1.082182e-51 | -8.615850e-47 |
| Msa0043210 | Msa1419490 | 0.898776 | 3.808312e-77 | -8.615850e-47 |
| Msa1419490 | Msa1420060 | 0.802427 | 5.638334e-49 | -8.615850e-47 |
| Msa1419490 | Msa1421550 | 0.845745 | 3.352334e-59 | -8.615850e-47 |
| Msa1419490 | Msa1423700 | 0.985296 | 3.982404e-163 | -8.615850e-47 |
| Msa1419490 | Msa1461060 | 0.845149 | 4.862412e-59 | -8.615850e-47 |
| Msa0137150 | Msa1419490 | 0.900914 | 4.542997e-78 | -8.615850e-47 |
| Msa0182340 | Msa1419490 | 0.936748 | 1.057012e-97 | -8.615850e-47 |
| Msa0392490 | Msa1419490 | 0.806636 | 7.473144e-50 | -8.615850e-47 |
| Msa0408640 | Msa1419490 | 0.807506 | 4.888865e-50 | -8.615850e-47 |
| Msa0451400 | Msa1419490 | 0.806509 | 7.945907e-50 | -8.615850e-47 |
| Msa0464540 | Msa1419490 | 0.800963 | 1.126187e-48 | -8.615850e-47 |
| Msa0999300 | Msa1419490 | 0.805300 | 1.426747e-49 | -8.615850e-47 |
| Msa1037900 | Msa1419490 | 0.820659 | 6.102226e-53 | -8.615850e-47 |
| Msa1041530 | Msa1419490 | 0.828721 | 7.682144e-55 | -8.615850e-47 |
| Msa1042670 | Msa1419490 | 0.802015 | 6.855296e-49 | -8.615850e-47 |
| Msa1081570 | Msa1419490 | 0.832419 | 9.555935e-56 | -8.615850e-47 |
| Msa0344570 | Msa1419490 | 0.807011 | 6.223959e-50 | -8.615850e-47 |
| Msa0359250 | Msa1419490 | 0.833971 | 3.925412e-56 | -8.615850e-47 |
| Msa1127140 | Msa1419490 | 0.837119 | 6.273919e-57 | -8.615850e-47 |
| Msa1129960 | Msa1419490 | 0.842966 | 1.872359e-58 | -8.615850e-47 |
| Msa1129970 | Msa1419490 | 0.802390 | 5.738246e-49 | -8.615850e-47 |
| Msa1166400 | Msa1419490 | 0.817232 | 3.669708e-52 | -8.615850e-47 |
| Msa1169990 | Msa1419490 | 0.820270 | 7.496404e-53 | -8.615850e-47 |
| Msa1201160 | Msa1419490 | 0.812625 | 3.859502e-51 | -8.615850e-47 |
| Msa0487630 | Msa1419490 | 0.801689 | 7.996728e-49 | -8.615850e-47 |
| Msa0537920 | Msa1419490 | 0.823161 | 1.607406e-53 | -8.615850e-47 |
| Msa0538220 | Msa1419490 | 0.809501 | 1.833711e-50 | -8.615850e-47 |
| Msa0867350 | Msa1419490 | 0.806795 | 6.914349e-50 | -8.615850e-47 |
| Msa0898730 | Msa1419490 | 0.816448 | 5.501012e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419490 | MtrunA17_Chr1g0209181 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.19e-126 | 352 |
| Msa1419490 | MtrunA17_Chr1g0183251 | 40.385 | 104 | 43 | 2 | 89 | 173 | 146 | 249 | 5.02e-17 | 76.6 |
| Msa1419490 | MtrunA17_Chr5g0428141 | 32.653 | 147 | 77 | 4 | 44 | 173 | 187 | 328 | 3.61e-16 | 75.1 |
| Msa1419490 | MtrunA17_Chr1g0193861 | 42.697 | 89 | 49 | 1 | 90 | 176 | 85 | 173 | 1.53e-15 | 70.9 |
| Msa1419490 | MtrunA17_Chr1g0166011 | 36.879 | 141 | 65 | 5 | 39 | 173 | 53 | 175 | 4.45e-15 | 69.7 |
| Msa1419490 | MtrunA17_Chr4g0069561 | 31.544 | 149 | 83 | 4 | 29 | 176 | 53 | 183 | 1.11e-14 | 68.6 |
| Msa1419490 | MtrunA17_Chr3g0137601 | 27.737 | 137 | 93 | 2 | 39 | 173 | 74 | 206 | 1.48e-14 | 68.9 |
| Msa1419490 | MtrunA17_Chr6g0486121 | 34.459 | 148 | 71 | 5 | 46 | 173 | 94 | 235 | 1.95e-14 | 69.3 |
| Msa1419490 | MtrunA17_Chr7g0270851 | 43.023 | 86 | 47 | 1 | 90 | 173 | 70 | 155 | 2.31e-14 | 67.4 |
| Msa1419490 | MtrunA17_Chr5g0411501 | 29.412 | 136 | 79 | 3 | 54 | 173 | 182 | 316 | 4.49e-14 | 68.9 |
| Msa1419490 | MtrunA17_Chr1g0187961 | 36.290 | 124 | 59 | 4 | 54 | 173 | 64 | 171 | 4.39e-13 | 64.3 |
| Msa1419490 | MtrunA17_Chr8g0340731 | 37.624 | 101 | 46 | 2 | 90 | 173 | 157 | 257 | 7.51e-13 | 65.1 |
| Msa1419490 | MtrunA17_Chr8g0366881 | 31.081 | 148 | 76 | 5 | 46 | 173 | 188 | 329 | 8.69e-13 | 65.5 |
| Msa1419490 | MtrunA17_Chr2g0331411 | 30.612 | 147 | 83 | 4 | 44 | 173 | 163 | 307 | 1.18e-12 | 65.1 |
| Msa1419490 | MtrunA17_Chr4g0064131 | 28.226 | 124 | 80 | 3 | 51 | 173 | 90 | 205 | 3.14e-12 | 62.4 |
| Msa1419490 | MtrunA17_Chr8g0390281 | 27.879 | 165 | 88 | 4 | 37 | 173 | 113 | 274 | 8.63e-12 | 62.4 |
| Msa1419490 | MtrunA17_Chr1g0190711 | 32.374 | 139 | 73 | 4 | 54 | 173 | 98 | 234 | 1.23e-11 | 61.6 |
| Msa1419490 | MtrunA17_Chr2g0330951 | 34.951 | 103 | 48 | 2 | 90 | 173 | 149 | 251 | 3.37e-11 | 60.5 |
| Msa1419490 | MtrunA17_Chr7g0260621 | 33.058 | 121 | 70 | 3 | 54 | 173 | 84 | 194 | 8.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419490 | AT2G01200.2 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa1419490 | AT2G01200.1 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa1419490 | AT1G15050.2 | 47.429 | 175 | 64 | 2 | 1 | 175 | 1 | 147 | 3.02e-51 | 162 |
| Msa1419490 | AT1G15050.1 | 47.429 | 175 | 64 | 2 | 1 | 175 | 33 | 179 | 5.54e-51 | 162 |
| Msa1419490 | AT2G33310.3 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa1419490 | AT2G33310.1 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa1419490 | AT2G33310.2 | 44.681 | 94 | 42 | 1 | 90 | 173 | 131 | 224 | 1.80e-20 | 85.9 |
| Msa1419490 | AT1G04550.2 | 45.556 | 90 | 42 | 1 | 89 | 171 | 125 | 214 | 3.17e-19 | 82.4 |
| Msa1419490 | AT4G28640.3 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.18e-14 | 68.9 |
| Msa1419490 | AT4G28640.1 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.26e-14 | 68.9 |
| Msa1419490 | AT4G28640.2 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 8.15e-14 | 68.6 |
| Msa1419490 | AT3G62100.1 | 43.529 | 85 | 47 | 1 | 90 | 173 | 84 | 168 | 1.15e-13 | 66.2 |
| Msa1419490 | AT1G52830.1 | 37.634 | 93 | 57 | 1 | 83 | 175 | 88 | 179 | 1.40e-13 | 66.2 |
| Msa1419490 | AT2G46990.1 | 41.111 | 90 | 52 | 1 | 90 | 178 | 86 | 175 | 1.93e-13 | 65.5 |
| Msa1419490 | AT3G17600.1 | 33.884 | 121 | 66 | 3 | 56 | 174 | 47 | 155 | 2.33e-13 | 65.1 |
| Msa1419490 | AT3G15540.1 | 39.773 | 88 | 51 | 2 | 89 | 175 | 97 | 183 | 1.50e-12 | 63.5 |
| Msa1419490 | AT3G16500.1 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 3.91e-12 | 63.5 |
| Msa1419490 | AT3G16500.2 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 4.25e-12 | 63.2 |
| Msa1419490 | AT2G22670.5 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa1419490 | AT2G22670.2 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa1419490 | AT2G22670.3 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa1419490 | AT2G22670.1 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa1419490 | AT2G22670.4 | 28.302 | 159 | 90 | 6 | 37 | 173 | 161 | 317 | 7.53e-12 | 63.2 |
| Msa1419490 | AT1G51950.1 | 34.343 | 99 | 48 | 2 | 90 | 173 | 151 | 247 | 8.60e-12 | 62.4 |
| Msa1419490 | AT5G25890.1 | 33.708 | 89 | 54 | 1 | 90 | 178 | 82 | 165 | 9.44e-12 | 60.8 |
| Msa1419490 | AT1G04240.1 | 32.258 | 124 | 70 | 3 | 54 | 173 | 65 | 178 | 2.88e-11 | 60.1 |
| Msa1419490 | AT4G29080.1 | 30.000 | 160 | 89 | 6 | 37 | 173 | 127 | 286 | 3.72e-11 | 60.8 |
| Msa1419490 | AT1G04240.2 | 32.258 | 124 | 70 | 3 | 54 | 173 | 165 | 278 | 4.50e-11 | 60.5 |
| Msa1419490 | AT5G65670.1 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.20e-11 | 60.8 |
| Msa1419490 | AT5G65670.2 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.32e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTCTTCCATGTGCTTT+TGG | 0.186139 | tig0024719:+28907 | None:intergenic |
| GTGCTTGAATTCTTCATATT+AGG | 0.248292 | tig0024719:-29632 | None:intergenic |
| TGTCCTACGTGGAAAATCTA+AGG | 0.324644 | tig0024719:+30478 | Msa1419490:three_prime_UTR |
| GGTATAAGATTATTTCAATC+TGG | 0.393434 | tig0024719:+30103 | Msa1419490:CDS |
| AAAATTTGTATTCTTGATCA+TGG | 0.399284 | tig0024719:+29767 | Msa1419490:CDS |
| ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | tig0024719:+29123 | Msa1419490:CDS |
| TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | tig0024719:+30082 | Msa1419490:intron |
| AGTGTATGATGATGACCTTA+TGG | 0.418403 | tig0024719:+29604 | Msa1419490:intron |
| ATTCAATTAGAAGACATGTT+TGG | 0.424570 | tig0024719:+29809 | Msa1419490:CDS |
| AAACTTTGATGAAGAGATAG+AGG | 0.443595 | tig0024719:+29679 | Msa1419490:CDS |
| ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | tig0024719:+30146 | Msa1419490:CDS |
| ATCTTATACCAGATACTGAT+TGG | 0.459323 | tig0024719:-30090 | None:intergenic |
| TCATATTAGGCCAATCCATA+AGG | 0.461452 | tig0024719:-29619 | None:intergenic |
| AAACATGTCTTCTAATTGAA+TGG | 0.463927 | tig0024719:-29807 | None:intergenic |
| CTAGATGAATTTGAGTCCAT+TGG | 0.479109 | tig0024719:-29036 | None:intergenic |
| GATGATGGCATAATTGATCT+TGG | 0.492063 | tig0024719:+29111 | Msa1419490:CDS |
| AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | tig0024719:-29706 | None:intergenic |
| ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | tig0024719:+29729 | Msa1419490:CDS |
| TATGTGAAGGTTAACATGGA+TGG | 0.499449 | tig0024719:+29728 | Msa1419490:CDS |
| TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | tig0024719:+30305 | Msa1419490:CDS |
| AGGATTGCACGCAAGAATGC+AGG | 0.524174 | tig0024719:+30325 | Msa1419490:CDS |
| GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | tig0024719:+29703 | Msa1419490:CDS |
| GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | tig0024719:+29702 | Msa1419490:CDS |
| AACATGGATGGGGTCTCCAT+TGG | 0.556874 | tig0024719:+29740 | Msa1419490:CDS |
| GTCCTACGTGGAAAATCTAA+GGG | 0.557347 | tig0024719:+30479 | Msa1419490:three_prime_UTR |
| TATCAGGACAAACATGATGA+TGG | 0.557533 | tig0024719:+29096 | Msa1419490:CDS |
| AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | tig0024719:+30299 | Msa1419490:CDS |
| AACTTTGATGAAGAGATAGA+GGG | 0.577407 | tig0024719:+29680 | Msa1419490:CDS |
| GGATGAACACATACTTCCAC+AGG | 0.585852 | tig0024719:-30186 | None:intergenic |
| AGGATAGTGAAGACAATTGG+AGG | 0.586064 | tig0024719:+30149 | Msa1419490:CDS |
| GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | tig0024719:+30170 | Msa1419490:CDS |
| TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | tig0024719:+29744 | Msa1419490:CDS |
| GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | tig0024719:+29724 | Msa1419490:CDS |
| TGTGAAGGTTAACATGGATG+GGG | 0.610516 | tig0024719:+29730 | Msa1419490:CDS |
| AGGGCATTATATCATACCAA+TGG | 0.616988 | tig0024719:+29020 | Msa1419490:exon |
| AGAGTACTCATTATTCTACA+AGG | 0.631045 | tig0024719:+30129 | Msa1419490:CDS |
| ATGATGATGACCTTATGGAT+TGG | 0.632385 | tig0024719:+29609 | Msa1419490:CDS |
| TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | tig0024719:+29715 | Msa1419490:CDS |
| GTGGAAATTCCAAAAGCACA+TGG | 0.637670 | tig0024719:-28916 | None:intergenic |
| GAAGACAATTGGAGGACTGT+TGG | 0.640837 | tig0024719:+30157 | Msa1419490:CDS |
| ATTTGTATTCTTGATCATGG+AGG | 0.642489 | tig0024719:+29770 | Msa1419490:CDS |
| ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | tig0024719:+29681 | Msa1419490:CDS |
| TCCTACGTGGAAAATCTAAG+GGG | 0.690768 | tig0024719:+30480 | Msa1419490:three_prime_UTR |
| TAGTAAAGCCATGTCCTACG+TGG | 0.693031 | tig0024719:+30467 | Msa1419490:three_prime_UTR |
| CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | tig0024719:+29682 | Msa1419490:CDS |
| CCTACGTGGAAAATCTAAGG+GGG | 0.731256 | tig0024719:+30481 | Msa1419490:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAACTTTTTAAAATGAT+GGG | - | tig0024719:29264-29283 | None:intergenic | 10.0% |
| !!! | TATAAAACTTTTTAAAATGA+TGG | - | tig0024719:29265-29284 | None:intergenic | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | tig0024719:30232-30251 | Msa1419490:intron | 10.0% |
| !!! | ATAAAACTTTTTAAAATGAT+GGG | - | tig0024719:29264-29283 | None:intergenic | 10.0% |
| !!! | TATAAAACTTTTTAAAATGA+TGG | - | tig0024719:29265-29284 | None:intergenic | 10.0% |
| !!! | ATTTTATTATATATACTAGT+TGG | + | tig0024719:30232-30251 | Msa1419490:intron | 10.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | tig0024719:29263-29282 | None:intergenic | 15.0% |
| !! | GATAAATATTATAGATGAAA+AGG | + | tig0024719:29534-29553 | Msa1419490:intron | 15.0% |
| !!! | TTTGTAATGTTTTGTTAATA+GGG | + | tig0024719:30276-30295 | Msa1419490:intron | 15.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | - | tig0024719:29263-29282 | None:intergenic | 15.0% |
| !! | GATAAATATTATAGATGAAA+AGG | + | tig0024719:29534-29553 | Msa1419490:intron | 15.0% |
| !!! | TTTGTAATGTTTTGTTAATA+GGG | + | tig0024719:30276-30295 | Msa1419490:intron | 15.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | tig0024719:28938-28957 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | tig0024719:29200-29219 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | tig0024719:29201-29220 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | tig0024719:29262-29281 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | tig0024719:29482-29501 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | tig0024719:29767-29786 | Msa1419490:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | tig0024719:30210-30229 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | tig0024719:30211-30230 | None:intergenic | 20.0% |
| !!! | GTTTGTAATGTTTTGTTAAT+AGG | + | tig0024719:30275-30294 | Msa1419490:intron | 20.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | - | tig0024719:28938-28957 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | - | tig0024719:29200-29219 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | - | tig0024719:29201-29220 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | - | tig0024719:29262-29281 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | - | tig0024719:29482-29501 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | + | tig0024719:29767-29786 | Msa1419490:CDS | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | - | tig0024719:30210-30229 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | - | tig0024719:30211-30230 | None:intergenic | 20.0% |
| !!! | GTTTGTAATGTTTTGTTAAT+AGG | + | tig0024719:30275-30294 | Msa1419490:intron | 20.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | tig0024719:29199-29218 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | tig0024719:29229-29248 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | tig0024719:29412-29431 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | tig0024719:29577-29596 | Msa1419490:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | tig0024719:29759-29778 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | tig0024719:29810-29829 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | tig0024719:29809-29828 | Msa1419490:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | tig0024719:30051-30070 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | tig0024719:30103-30122 | Msa1419490:CDS | 25.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | - | tig0024719:29199-29218 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | - | tig0024719:29229-29248 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | - | tig0024719:29412-29431 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | + | tig0024719:29577-29596 | Msa1419490:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | - | tig0024719:29759-29778 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | - | tig0024719:29810-29829 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | + | tig0024719:29809-29828 | Msa1419490:CDS | 25.0% |
| !! | ATACAACTTATCAGTCATTT+TGG | - | tig0024719:30051-30070 | None:intergenic | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | + | tig0024719:30103-30122 | Msa1419490:CDS | 25.0% |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | tig0024719:29000-29019 | Msa1419490:five_prime_UTR | 30.0% |
| !!! | GACCACTAAACTTTTTCATA+GGG | + | tig0024719:29001-29020 | Msa1419490:five_prime_UTR | 30.0% |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | tig0024719:29080-29099 | Msa1419490:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | tig0024719:29503-29522 | Msa1419490:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | tig0024719:29635-29654 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | tig0024719:29676-29695 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | tig0024719:29679-29698 | Msa1419490:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | tig0024719:29680-29699 | Msa1419490:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | tig0024719:29770-29789 | Msa1419490:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | tig0024719:29877-29896 | Msa1419490:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | tig0024719:29993-30012 | Msa1419490:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | tig0024719:30064-30083 | Msa1419490:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | tig0024719:30093-30112 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | tig0024719:30129-30148 | Msa1419490:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | tig0024719:30299-30318 | Msa1419490:CDS | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | + | tig0024719:29000-29019 | Msa1419490:five_prime_UTR | 30.0% |
| !!! | GACCACTAAACTTTTTCATA+GGG | + | tig0024719:29001-29020 | Msa1419490:five_prime_UTR | 30.0% |
| ! | TTTTCACTCAGTTTTCTATC+AGG | + | tig0024719:29080-29099 | Msa1419490:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | + | tig0024719:29503-29522 | Msa1419490:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | - | tig0024719:29635-29654 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | - | tig0024719:29676-29695 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | + | tig0024719:29679-29698 | Msa1419490:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | + | tig0024719:29680-29699 | Msa1419490:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | + | tig0024719:29770-29789 | Msa1419490:CDS | 30.0% | |
| ATTTCTCCATCTTATCAAAG+TGG | + | tig0024719:29877-29896 | Msa1419490:intron | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | + | tig0024719:29993-30012 | Msa1419490:intron | 30.0% | |
| GTTGTATAATTACCCTATTC+AGG | + | tig0024719:30064-30083 | Msa1419490:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | - | tig0024719:30093-30112 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | + | tig0024719:30129-30148 | Msa1419490:CDS | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | + | tig0024719:30299-30318 | Msa1419490:CDS | 30.0% | |
| TGCCCTATGAAAAAGTTTAG+TGG | - | tig0024719:29006-29025 | None:intergenic | 35.0% | |
| ! | AGGGCATTATATCATACCAA+TGG | + | tig0024719:29020-29039 | Msa1419490:exon | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | - | tig0024719:29039-29058 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | tig0024719:29096-29115 | Msa1419490:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | tig0024719:29111-29130 | Msa1419490:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | tig0024719:29123-29142 | Msa1419490:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | tig0024719:29604-29623 | Msa1419490:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | tig0024719:29609-29628 | Msa1419490:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | tig0024719:29622-29641 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | tig0024719:29681-29700 | Msa1419490:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | tig0024719:29728-29747 | Msa1419490:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | tig0024719:29729-29748 | Msa1419490:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | tig0024719:29845-29864 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | tig0024719:29886-29905 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | tig0024719:30146-30165 | Msa1419490:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | tig0024719:30305-30324 | Msa1419490:CDS | 35.0% | |
| TGCCCTATGAAAAAGTTTAG+TGG | - | tig0024719:29006-29025 | None:intergenic | 35.0% | |
| ! | AGGGCATTATATCATACCAA+TGG | + | tig0024719:29020-29039 | Msa1419490:exon | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | - | tig0024719:29039-29058 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | + | tig0024719:29096-29115 | Msa1419490:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | + | tig0024719:29111-29130 | Msa1419490:CDS | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | + | tig0024719:29123-29142 | Msa1419490:CDS | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | + | tig0024719:29604-29623 | Msa1419490:intron | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | + | tig0024719:29609-29628 | Msa1419490:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | - | tig0024719:29622-29641 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | + | tig0024719:29681-29700 | Msa1419490:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | + | tig0024719:29728-29747 | Msa1419490:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | + | tig0024719:29729-29748 | Msa1419490:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | - | tig0024719:29845-29864 | None:intergenic | 35.0% | |
| AACTGTCCACTTTGATAAGA+TGG | - | tig0024719:29886-29905 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | + | tig0024719:30146-30165 | Msa1419490:CDS | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | + | tig0024719:30305-30324 | Msa1419490:CDS | 35.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | tig0024719:28919-28938 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | tig0024719:29682-29701 | Msa1419490:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | tig0024719:29724-29743 | Msa1419490:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | tig0024719:29730-29749 | Msa1419490:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | tig0024719:30004-30023 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | tig0024719:30079-30098 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | tig0024719:30080-30099 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | tig0024719:30149-30168 | Msa1419490:CDS | 40.0% | |
| ! | TAGATTTTCCACGTAGGACA+TGG | - | tig0024719:30478-30497 | None:intergenic | 40.0% |
| TGTCCTACGTGGAAAATCTA+AGG | + | tig0024719:30478-30497 | Msa1419490:three_prime_UTR | 40.0% | |
| GTCCTACGTGGAAAATCTAA+GGG | + | tig0024719:30479-30498 | Msa1419490:three_prime_UTR | 40.0% | |
| TCCTACGTGGAAAATCTAAG+GGG | + | tig0024719:30480-30499 | Msa1419490:three_prime_UTR | 40.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | - | tig0024719:28919-28938 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | + | tig0024719:29682-29701 | Msa1419490:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | + | tig0024719:29724-29743 | Msa1419490:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | + | tig0024719:29730-29749 | Msa1419490:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | - | tig0024719:30004-30023 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | - | tig0024719:30079-30098 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | - | tig0024719:30080-30099 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | + | tig0024719:30149-30168 | Msa1419490:CDS | 40.0% | |
| ! | TAGATTTTCCACGTAGGACA+TGG | - | tig0024719:30478-30497 | None:intergenic | 40.0% |
| TGTCCTACGTGGAAAATCTA+AGG | + | tig0024719:30478-30497 | Msa1419490:three_prime_UTR | 40.0% | |
| GTCCTACGTGGAAAATCTAA+GGG | + | tig0024719:30479-30498 | Msa1419490:three_prime_UTR | 40.0% | |
| TCCTACGTGGAAAATCTAAG+GGG | + | tig0024719:30480-30499 | Msa1419490:three_prime_UTR | 40.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | tig0024719:29715-29734 | Msa1419490:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | tig0024719:30082-30101 | Msa1419490:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | tig0024719:30157-30176 | Msa1419490:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | tig0024719:30189-30208 | None:intergenic | 45.0% | |
| TAGTAAAGCCATGTCCTACG+TGG | + | tig0024719:30467-30486 | Msa1419490:three_prime_UTR | 45.0% | |
| CCTACGTGGAAAATCTAAGG+GGG | + | tig0024719:30481-30500 | Msa1419490:three_prime_UTR | 45.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | + | tig0024719:29715-29734 | Msa1419490:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | + | tig0024719:30082-30101 | Msa1419490:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | + | tig0024719:30157-30176 | Msa1419490:CDS | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | - | tig0024719:30189-30208 | None:intergenic | 45.0% | |
| TAGTAAAGCCATGTCCTACG+TGG | + | tig0024719:30467-30486 | Msa1419490:three_prime_UTR | 45.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | + | tig0024719:29703-29722 | Msa1419490:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | tig0024719:29709-29728 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | tig0024719:29740-29759 | Msa1419490:CDS | 50.0% | |
| AGGATTGCACGCAAGAATGC+AGG | + | tig0024719:30325-30344 | Msa1419490:CDS | 50.0% | |
| ! | CCCCCTTAGATTTTCCACGT+AGG | - | tig0024719:30484-30503 | None:intergenic | 50.0% |
| GGTCCAGAGCAATGAGAGAT+GGG | + | tig0024719:29703-29722 | Msa1419490:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | - | tig0024719:29709-29728 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | + | tig0024719:29740-29759 | Msa1419490:CDS | 50.0% | |
| AGGATTGCACGCAAGAATGC+AGG | + | tig0024719:30325-30344 | Msa1419490:CDS | 50.0% | |
| ! | CCCCCTTAGATTTTCCACGT+AGG | - | tig0024719:30484-30503 | None:intergenic | 50.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | + | tig0024719:29702-29721 | Msa1419490:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | tig0024719:29744-29763 | Msa1419490:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | tig0024719:30170-30189 | Msa1419490:CDS | 55.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | + | tig0024719:29702-29721 | Msa1419490:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | + | tig0024719:29744-29763 | Msa1419490:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | + | tig0024719:30170-30189 | Msa1419490:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024719 | gene | 28908 | 30503 | 28908 | ID=Msa1419490;Name=Msa1419490 |
| tig0024719 | mRNA | 28908 | 30503 | 28908 | ID=Msa1419490-mRNA-1;Parent=Msa1419490;Name=Msa1419490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=131|1|1|1|1|1|4|134|183 |
| tig0024719 | exon | 28908 | 29183 | 28908 | ID=Msa1419490-mRNA-1:exon:923;Parent=Msa1419490-mRNA-1 |
| tig0024719 | exon | 29606 | 29830 | 29606 | ID=Msa1419490-mRNA-1:exon:924;Parent=Msa1419490-mRNA-1 |
| tig0024719 | exon | 30086 | 30194 | 30086 | ID=Msa1419490-mRNA-1:exon:925;Parent=Msa1419490-mRNA-1 |
| tig0024719 | exon | 30297 | 30503 | 30297 | ID=Msa1419490-mRNA-1:exon:926;Parent=Msa1419490-mRNA-1 |
| tig0024719 | five_prime_UTR | 28908 | 29038 | 28908 | ID=Msa1419490-mRNA-1:five_prime_utr;Parent=Msa1419490-mRNA-1 |
| tig0024719 | CDS | 29039 | 29183 | 29039 | ID=Msa1419490-mRNA-1:cds;Parent=Msa1419490-mRNA-1 |
| tig0024719 | CDS | 29606 | 29830 | 29606 | ID=Msa1419490-mRNA-1:cds;Parent=Msa1419490-mRNA-1 |
| tig0024719 | CDS | 30086 | 30194 | 30086 | ID=Msa1419490-mRNA-1:cds;Parent=Msa1419490-mRNA-1 |
| tig0024719 | CDS | 30297 | 30369 | 30297 | ID=Msa1419490-mRNA-1:cds;Parent=Msa1419490-mRNA-1 |
| tig0024719 | three_prime_UTR | 30370 | 30503 | 30370 | ID=Msa1419490-mRNA-1:three_prime_utr;Parent=Msa1419490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
