Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043210 | sp|Q8RYC6|IAA32_ARATH | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.24e-56 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043210 | A0A072VQ82 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 1.66e-122 | 352 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0043210 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0043210 | 0.800015 | 1.756862e-48 | -8.615850e-47 |
| Msa0043210 | Msa0050040 | 0.825896 | 3.650360e-54 | -8.615850e-47 |
| Msa0043210 | Msa0053110 | 0.809242 | 2.084186e-50 | -8.615850e-47 |
| Msa0043210 | Msa0098440 | 0.808960 | 2.395324e-50 | -8.615850e-47 |
| Msa0043210 | Msa0102990 | 0.826310 | 2.910707e-54 | -8.615850e-47 |
| Msa0043210 | Msa0137150 | 0.951379 | 2.312067e-109 | -8.615850e-47 |
| Msa0043210 | Msa0182340 | 0.856119 | 3.989085e-62 | -8.615850e-47 |
| Msa0043210 | Msa0219190 | 0.819503 | 1.122525e-52 | -8.615850e-47 |
| Msa0043210 | Msa0298240 | 0.820544 | 6.486831e-53 | -8.615850e-47 |
| Msa0043210 | Msa0359250 | 0.806227 | 9.112980e-50 | -8.615850e-47 |
| Msa0043210 | Msa0361260 | 0.827543 | 1.476440e-54 | -8.615850e-47 |
| Msa0043210 | Msa0370600 | 0.810506 | 1.114603e-50 | -8.615850e-47 |
| Msa0043210 | Msa0408630 | 0.800330 | 1.515747e-48 | -8.615850e-47 |
| Msa0043210 | Msa0408640 | 0.835570 | 1.553572e-56 | -8.615850e-47 |
| Msa0043210 | Msa0418200 | 0.828124 | 1.070151e-54 | -8.615850e-47 |
| Msa0043210 | Msa0436500 | 0.839870 | 1.223149e-57 | -8.615850e-47 |
| Msa0043210 | Msa0453520 | 0.827923 | 1.196273e-54 | -8.615850e-47 |
| Msa0043210 | Msa0464540 | 0.819566 | 1.086029e-52 | -8.615850e-47 |
| Msa0043210 | Msa0487630 | 0.801022 | 1.095364e-48 | -8.615850e-47 |
| Msa0043210 | Msa0537920 | 0.847209 | 1.336147e-59 | -8.615850e-47 |
| Msa0043210 | Msa0538220 | 0.844993 | 5.358912e-59 | -8.615850e-47 |
| Msa0043210 | Msa0543850 | 0.802359 | 5.825487e-49 | -8.615850e-47 |
| Msa0043210 | Msa0585730 | 0.807987 | 3.864102e-50 | -8.615850e-47 |
| Msa0043210 | Msa0625890 | 0.807074 | 6.036516e-50 | -8.615850e-47 |
| Msa0043210 | Msa0641250 | 0.816577 | 5.147150e-52 | -8.615850e-47 |
| Msa0043210 | Msa0663680 | 0.819317 | 1.237719e-52 | -8.615850e-47 |
| Msa0043210 | Msa0680150 | 0.819500 | 1.124285e-52 | -8.615850e-47 |
| Msa0043210 | Msa0688500 | 0.839182 | 1.846647e-57 | -8.615850e-47 |
| Msa0043210 | Msa0747780 | 0.812352 | 4.426180e-51 | -8.615850e-47 |
| Msa0043210 | Msa0757870 | 0.813993 | 1.932245e-51 | -8.615850e-47 |
| Msa0043210 | Msa0761580 | 0.818768 | 1.649554e-52 | -8.615850e-47 |
| Msa0043210 | Msa0867350 | 0.815968 | 7.043703e-52 | -8.615850e-47 |
| Msa0043210 | Msa0872310 | 0.855122 | 7.796336e-62 | -8.615850e-47 |
| Msa0043210 | Msa0898730 | 0.815550 | 8.729664e-52 | -8.615850e-47 |
| Msa0043210 | Msa0905260 | 0.806846 | 6.746614e-50 | -8.615850e-47 |
| Msa0043210 | Msa0905550 | 0.833973 | 3.920885e-56 | -8.615850e-47 |
| Msa0043210 | Msa0936340 | 0.821959 | 3.059289e-53 | -8.615850e-47 |
| Msa0043210 | Msa0937240 | 0.812551 | 4.005090e-51 | -8.615850e-47 |
| Msa0043210 | Msa0937550 | 0.849201 | 3.764687e-60 | -8.615850e-47 |
| Msa0043210 | Msa0974530 | 0.820509 | 6.605275e-53 | -8.615850e-47 |
| Msa0043210 | Msa0974750 | 0.810984 | 8.780977e-51 | -8.615850e-47 |
| Msa0043210 | Msa0979510 | 0.811059 | 8.459222e-51 | -8.615850e-47 |
| Msa0043210 | Msa1032450 | 0.841014 | 6.141044e-58 | -8.615850e-47 |
| Msa0043210 | Msa1037900 | 0.809295 | 2.031018e-50 | -8.615850e-47 |
| Msa0043210 | Msa1037910 | 0.807284 | 5.448235e-50 | -8.615850e-47 |
| Msa0043210 | Msa1041530 | 0.854561 | 1.134165e-61 | -8.615850e-47 |
| Msa0043210 | Msa1042670 | 0.842575 | 2.378784e-58 | -8.615850e-47 |
| Msa0043210 | Msa1061500 | 0.837777 | 4.254613e-57 | -8.615850e-47 |
| Msa0043210 | Msa1081570 | 0.858450 | 8.171479e-63 | -8.615850e-47 |
| Msa0043210 | Msa1123880 | 0.811406 | 7.112692e-51 | -8.615850e-47 |
| Msa0043210 | Msa1127140 | 0.865847 | 4.388882e-65 | -8.615850e-47 |
| Msa0043210 | Msa1129960 | 0.847725 | 9.642704e-60 | -8.615850e-47 |
| Msa0043210 | Msa1129970 | 0.814975 | 1.171338e-51 | -8.615850e-47 |
| Msa0043210 | Msa1134110 | 0.810040 | 1.404631e-50 | -8.615850e-47 |
| Msa0043210 | Msa1166400 | 0.852205 | 5.379553e-61 | -8.615850e-47 |
| Msa0043210 | Msa1169990 | 0.882892 | 7.116222e-71 | -8.615850e-47 |
| Msa0043210 | Msa1176160 | 0.819659 | 1.033891e-52 | -8.615850e-47 |
| Msa0043210 | Msa1201160 | 0.802951 | 4.397213e-49 | -8.615850e-47 |
| Msa0043210 | Msa1227220 | 0.820839 | 5.548175e-53 | -8.615850e-47 |
| Msa0043210 | Msa1251160 | 0.800299 | 1.538338e-48 | -8.615850e-47 |
| Msa0043210 | Msa1272330 | 0.812580 | 3.947628e-51 | -8.615850e-47 |
| Msa0043210 | Msa1307190 | 0.802204 | 6.267133e-49 | -8.615850e-47 |
| Msa0043210 | Msa1355400 | 0.820612 | 6.256271e-53 | -8.615850e-47 |
| Msa0043210 | Msa1419490 | 0.898776 | 3.808312e-77 | -8.615850e-47 |
| Msa0043210 | Msa1420060 | 0.839962 | 1.157831e-57 | -8.615850e-47 |
| Msa0043210 | Msa1421550 | 0.848105 | 7.576022e-60 | -8.615850e-47 |
| Msa0043210 | Msa1423700 | 0.881375 | 2.529003e-70 | -8.615850e-47 |
| Msa0043210 | Msa1461060 | 0.838401 | 2.940112e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043210 | MtrunA17_Chr1g0209181 | 95.628 | 183 | 3 | 1 | 1 | 183 | 1 | 178 | 3.19e-126 | 352 |
| Msa0043210 | MtrunA17_Chr1g0183251 | 40.385 | 104 | 43 | 2 | 89 | 173 | 146 | 249 | 5.02e-17 | 76.6 |
| Msa0043210 | MtrunA17_Chr5g0428141 | 32.653 | 147 | 77 | 4 | 44 | 173 | 187 | 328 | 3.61e-16 | 75.1 |
| Msa0043210 | MtrunA17_Chr1g0193861 | 42.697 | 89 | 49 | 1 | 90 | 176 | 85 | 173 | 1.53e-15 | 70.9 |
| Msa0043210 | MtrunA17_Chr1g0166011 | 36.879 | 141 | 65 | 5 | 39 | 173 | 53 | 175 | 4.45e-15 | 69.7 |
| Msa0043210 | MtrunA17_Chr4g0069561 | 31.544 | 149 | 83 | 4 | 29 | 176 | 53 | 183 | 1.11e-14 | 68.6 |
| Msa0043210 | MtrunA17_Chr3g0137601 | 27.737 | 137 | 93 | 2 | 39 | 173 | 74 | 206 | 1.48e-14 | 68.9 |
| Msa0043210 | MtrunA17_Chr6g0486121 | 34.459 | 148 | 71 | 5 | 46 | 173 | 94 | 235 | 1.95e-14 | 69.3 |
| Msa0043210 | MtrunA17_Chr7g0270851 | 43.023 | 86 | 47 | 1 | 90 | 173 | 70 | 155 | 2.31e-14 | 67.4 |
| Msa0043210 | MtrunA17_Chr5g0411501 | 29.412 | 136 | 79 | 3 | 54 | 173 | 182 | 316 | 4.49e-14 | 68.9 |
| Msa0043210 | MtrunA17_Chr1g0187961 | 36.290 | 124 | 59 | 4 | 54 | 173 | 64 | 171 | 4.39e-13 | 64.3 |
| Msa0043210 | MtrunA17_Chr8g0340731 | 37.624 | 101 | 46 | 2 | 90 | 173 | 157 | 257 | 7.51e-13 | 65.1 |
| Msa0043210 | MtrunA17_Chr8g0366881 | 31.081 | 148 | 76 | 5 | 46 | 173 | 188 | 329 | 8.69e-13 | 65.5 |
| Msa0043210 | MtrunA17_Chr2g0331411 | 30.612 | 147 | 83 | 4 | 44 | 173 | 163 | 307 | 1.18e-12 | 65.1 |
| Msa0043210 | MtrunA17_Chr4g0064131 | 28.226 | 124 | 80 | 3 | 51 | 173 | 90 | 205 | 3.14e-12 | 62.4 |
| Msa0043210 | MtrunA17_Chr8g0390281 | 27.879 | 165 | 88 | 4 | 37 | 173 | 113 | 274 | 8.63e-12 | 62.4 |
| Msa0043210 | MtrunA17_Chr1g0190711 | 32.374 | 139 | 73 | 4 | 54 | 173 | 98 | 234 | 1.23e-11 | 61.6 |
| Msa0043210 | MtrunA17_Chr2g0330951 | 34.951 | 103 | 48 | 2 | 90 | 173 | 149 | 251 | 3.37e-11 | 60.5 |
| Msa0043210 | MtrunA17_Chr7g0260621 | 33.058 | 121 | 70 | 3 | 54 | 173 | 84 | 194 | 8.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043210 | AT2G01200.2 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0043210 | AT2G01200.1 | 48.649 | 185 | 85 | 3 | 1 | 175 | 1 | 185 | 1.26e-57 | 179 |
| Msa0043210 | AT1G15050.2 | 47.429 | 175 | 64 | 2 | 1 | 175 | 1 | 147 | 3.02e-51 | 162 |
| Msa0043210 | AT1G15050.1 | 47.429 | 175 | 64 | 2 | 1 | 175 | 33 | 179 | 5.54e-51 | 162 |
| Msa0043210 | AT2G33310.3 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0043210 | AT2G33310.1 | 44.681 | 94 | 42 | 1 | 90 | 173 | 130 | 223 | 1.68e-20 | 85.9 |
| Msa0043210 | AT2G33310.2 | 44.681 | 94 | 42 | 1 | 90 | 173 | 131 | 224 | 1.80e-20 | 85.9 |
| Msa0043210 | AT1G04550.2 | 45.556 | 90 | 42 | 1 | 89 | 171 | 125 | 214 | 3.17e-19 | 82.4 |
| Msa0043210 | AT4G28640.3 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.18e-14 | 68.9 |
| Msa0043210 | AT4G28640.1 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 3.26e-14 | 68.9 |
| Msa0043210 | AT4G28640.2 | 40.206 | 97 | 45 | 3 | 90 | 173 | 138 | 234 | 8.15e-14 | 68.6 |
| Msa0043210 | AT3G62100.1 | 43.529 | 85 | 47 | 1 | 90 | 173 | 84 | 168 | 1.15e-13 | 66.2 |
| Msa0043210 | AT1G52830.1 | 37.634 | 93 | 57 | 1 | 83 | 175 | 88 | 179 | 1.40e-13 | 66.2 |
| Msa0043210 | AT2G46990.1 | 41.111 | 90 | 52 | 1 | 90 | 178 | 86 | 175 | 1.93e-13 | 65.5 |
| Msa0043210 | AT3G17600.1 | 33.884 | 121 | 66 | 3 | 56 | 174 | 47 | 155 | 2.33e-13 | 65.1 |
| Msa0043210 | AT3G15540.1 | 39.773 | 88 | 51 | 2 | 89 | 175 | 97 | 183 | 1.50e-12 | 63.5 |
| Msa0043210 | AT3G16500.1 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 3.91e-12 | 63.5 |
| Msa0043210 | AT3G16500.2 | 30.328 | 122 | 71 | 2 | 65 | 173 | 129 | 249 | 4.25e-12 | 63.2 |
| Msa0043210 | AT2G22670.5 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0043210 | AT2G22670.2 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.60e-12 | 63.2 |
| Msa0043210 | AT2G22670.3 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0043210 | AT2G22670.1 | 28.302 | 159 | 90 | 6 | 37 | 173 | 144 | 300 | 6.85e-12 | 63.2 |
| Msa0043210 | AT2G22670.4 | 28.302 | 159 | 90 | 6 | 37 | 173 | 161 | 317 | 7.53e-12 | 63.2 |
| Msa0043210 | AT1G51950.1 | 34.343 | 99 | 48 | 2 | 90 | 173 | 151 | 247 | 8.60e-12 | 62.4 |
| Msa0043210 | AT5G25890.1 | 33.708 | 89 | 54 | 1 | 90 | 178 | 82 | 165 | 9.44e-12 | 60.8 |
| Msa0043210 | AT1G04240.1 | 32.258 | 124 | 70 | 3 | 54 | 173 | 65 | 178 | 2.88e-11 | 60.1 |
| Msa0043210 | AT4G29080.1 | 30.000 | 160 | 89 | 6 | 37 | 173 | 127 | 286 | 3.72e-11 | 60.8 |
| Msa0043210 | AT1G04240.2 | 32.258 | 124 | 70 | 3 | 54 | 173 | 165 | 278 | 4.50e-11 | 60.5 |
| Msa0043210 | AT5G65670.1 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.20e-11 | 60.8 |
| Msa0043210 | AT5G65670.2 | 27.941 | 136 | 80 | 4 | 54 | 173 | 184 | 317 | 5.32e-11 | 60.5 |
Find 42 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTCTTCCATGTGCTTT+TGG | 0.186139 | 1_1:-74311386 | Msa0043210:five_prime_UTR |
| GTGCTTGAATTCTTCATATT+AGG | 0.248292 | 1_1:+74310662 | None:intergenic |
| GGTATAAGATTATTTCAATC+TGG | 0.393434 | 1_1:-74310192 | Msa0043210:CDS |
| AAAATTTGTATTCTTGATCA+TGG | 0.399284 | 1_1:-74310527 | Msa0043210:CDS |
| TTGTAAAGGCAAGTCCTTCA+TGG | 0.402501 | 1_1:-74309817 | Msa0043210:three_prime_UTR |
| ATTGATCTTGGTCTTAGTCT+TGG | 0.403384 | 1_1:-74311170 | Msa0043210:CDS |
| TCAGGTAGCCAATCAGTATC+TGG | 0.404191 | 1_1:-74310213 | Msa0043210:intron |
| AGTGTATGATGATGACCTTA+TGG | 0.418403 | 1_1:-74310690 | Msa0043210:CDS |
| ATTCAATTAGAAGACATGTT+TGG | 0.424570 | 1_1:-74310485 | Msa0043210:intron |
| AAACTTTGATGAAGAGATAG+AGG | 0.443595 | 1_1:-74310615 | Msa0043210:CDS |
| ACAAGGATAGTGAAGACAAT+TGG | 0.458182 | 1_1:-74310149 | Msa0043210:CDS |
| ATCTTATACCAGATACTGAT+TGG | 0.459323 | 1_1:+74310205 | None:intergenic |
| TCATATTAGGCCAATCCATA+AGG | 0.461452 | 1_1:+74310675 | None:intergenic |
| AAACATGTCTTCTAATTGAA+TGG | 0.463927 | 1_1:+74310487 | None:intergenic |
| CTAGATGAATTTGAGTCCAT+TGG | 0.479109 | 1_1:+74311257 | None:intergenic |
| GATGATGGCATAATTGATCT+TGG | 0.492063 | 1_1:-74311182 | Msa0043210:CDS |
| AAGCCCATCTCTCATTGCTC+TGG | 0.494319 | 1_1:+74310588 | None:intergenic |
| ATGTGAAGGTTAACATGGAT+GGG | 0.495408 | 1_1:-74310565 | Msa0043210:CDS |
| TATGTGAAGGTTAACATGGA+TGG | 0.499449 | 1_1:-74310566 | Msa0043210:CDS |
| TAGAATGTGTGAAAAGGCTA+AGG | 0.521536 | 1_1:-74309994 | Msa0043210:CDS |
| GGTCCAGAGCAATGAGAGAT+GGG | 0.537453 | 1_1:-74310591 | Msa0043210:CDS |
| GGGTCCAGAGCAATGAGAGA+TGG | 0.546013 | 1_1:-74310592 | Msa0043210:CDS |
| AACATGGATGGGGTCTCCAT+TGG | 0.556874 | 1_1:-74310554 | Msa0043210:CDS |
| TATCAGGACAAACATGATGA+TGG | 0.557533 | 1_1:-74311197 | Msa0043210:CDS |
| AGTTTGTAGAATGTGTGAAA+AGG | 0.572178 | 1_1:-74310000 | Msa0043210:CDS |
| AACTTTGATGAAGAGATAGA+GGG | 0.577407 | 1_1:-74310614 | Msa0043210:CDS |
| GGATGAACACATACTTCCAC+AGG | 0.585852 | 1_1:+74310109 | None:intergenic |
| AGGATAGTGAAGACAATTGG+AGG | 0.586064 | 1_1:-74310146 | Msa0043210:CDS |
| GGACTGTTGGTGATGTCCTG+TGG | 0.599377 | 1_1:-74310125 | Msa0043210:CDS |
| TGGATGGGGTCTCCATTGGT+AGG | 0.603415 | 1_1:-74310550 | Msa0043210:CDS |
| GGCTTATGTGAAGGTTAACA+TGG | 0.603593 | 1_1:-74310570 | Msa0043210:CDS |
| AGGATTGCAAGAAAGAATGC+AGG | 0.603908 | 1_1:-74309974 | Msa0043210:CDS |
| TGTGAAGGTTAACATGGATG+GGG | 0.610516 | 1_1:-74310564 | Msa0043210:CDS |
| AGGACATTATATCATACCAA+TGG | 0.612781 | 1_1:-74311273 | Msa0043210:exon |
| AGAGTACTCATTATTCTACA+AGG | 0.631045 | 1_1:-74310166 | Msa0043210:CDS |
| ATGATGATGACCTTATGGAT+TGG | 0.632385 | 1_1:-74310685 | Msa0043210:CDS |
| TGAGAGATGGGCTTATGTGA+AGG | 0.637438 | 1_1:-74310579 | Msa0043210:CDS |
| GTGGAAATTCCAAAAGCACA+TGG | 0.637670 | 1_1:+74311377 | None:intergenic |
| GAAGACAATTGGAGGACTGT+TGG | 0.640837 | 1_1:-74310138 | Msa0043210:CDS |
| ATTTGTATTCTTGATCATGG+AGG | 0.642489 | 1_1:-74310524 | Msa0043210:CDS |
| ACTTTGATGAAGAGATAGAG+GGG | 0.683990 | 1_1:-74310613 | Msa0043210:CDS |
| CTTTGATGAAGAGATAGAGG+GGG | 0.700859 | 1_1:-74310612 | Msa0043210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAACTTTTTAAAATGATG+GGG | + | chr1_1:74310163-74310182 | None:intergenic | 15.0% |
| !!! | GTAAAACTTTTTAAAATGAT+GGG | + | chr1_1:74310164-74310183 | None:intergenic | 15.0% |
| !!! | TGTAAAACTTTTTAAAATGA+TGG | + | chr1_1:74310165-74310184 | None:intergenic | 15.0% |
| !!! | TAAAACTTTTTAAAATGATG+GGG | + | chr1_1:74310163-74310182 | None:intergenic | 15.0% |
| !!! | GTAAAACTTTTTAAAATGAT+GGG | + | chr1_1:74310164-74310183 | None:intergenic | 15.0% |
| !!! | TGTAAAACTTTTTAAAATGA+TGG | + | chr1_1:74310165-74310184 | None:intergenic | 15.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | + | chr1_1:74309838-74309857 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | + | chr1_1:74310100-74310119 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | + | chr1_1:74310101-74310120 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | + | chr1_1:74310162-74310181 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | + | chr1_1:74310381-74310400 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | - | chr1_1:74310666-74310685 | Msa0043210:CDS | 20.0% |
| !!! | ATACAATTTATCAGTCATTT+TGG | + | chr1_1:74310949-74310968 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | + | chr1_1:74311108-74311127 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | + | chr1_1:74311109-74311128 | None:intergenic | 20.0% |
| !!! | CTACATTTTATTATACTAGT+TGG | - | chr1_1:74311126-74311145 | Msa0043210:intron | 20.0% |
| !!! | TTTGTAATGTTTTGTTAACA+GGG | - | chr1_1:74311170-74311189 | Msa0043210:CDS | 20.0% |
| !!! | AAATTTTTTGAGTATCTAAG+TGG | + | chr1_1:74309838-74309857 | None:intergenic | 20.0% |
| !! | AAAATTGAAACAATGAACAA+GGG | + | chr1_1:74310100-74310119 | None:intergenic | 20.0% |
| !! | AAAAATTGAAACAATGAACA+AGG | + | chr1_1:74310101-74310120 | None:intergenic | 20.0% |
| !!! | AAAACTTTTTAAAATGATGG+GGG | + | chr1_1:74310162-74310181 | None:intergenic | 20.0% |
| !!! | AGTTTGTATCAATCATTTTT+AGG | + | chr1_1:74310381-74310400 | None:intergenic | 20.0% |
| !! | AAAATTTGTATTCTTGATCA+TGG | - | chr1_1:74310666-74310685 | Msa0043210:CDS | 20.0% |
| !!! | ATACAATTTATCAGTCATTT+TGG | + | chr1_1:74310949-74310968 | None:intergenic | 20.0% |
| !!! | AGAAAAGTGTTAAATGAAAA+GGG | + | chr1_1:74311108-74311127 | None:intergenic | 20.0% |
| !!! | TAGAAAAGTGTTAAATGAAA+AGG | + | chr1_1:74311109-74311128 | None:intergenic | 20.0% |
| !!! | CTACATTTTATTATACTAGT+TGG | - | chr1_1:74311126-74311145 | Msa0043210:intron | 20.0% |
| !!! | TTTGTAATGTTTTGTTAACA+GGG | - | chr1_1:74311170-74311189 | Msa0043210:CDS | 20.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | + | chr1_1:74310099-74310118 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | + | chr1_1:74310129-74310148 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | + | chr1_1:74310312-74310331 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | - | chr1_1:74310476-74310495 | Msa0043210:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | + | chr1_1:74310658-74310677 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | + | chr1_1:74310709-74310728 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | - | chr1_1:74310708-74310727 | Msa0043210:intron | 25.0% |
| ! | ATTGTATAATTACCCTATTC+AGG | - | chr1_1:74310962-74310981 | Msa0043210:intron | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | - | chr1_1:74311001-74311020 | Msa0043210:intron | 25.0% |
| !!! | GTTTGTAATGTTTTGTTAAC+AGG | - | chr1_1:74311169-74311188 | Msa0043210:CDS | 25.0% |
| ! | AAATTGAAACAATGAACAAG+GGG | + | chr1_1:74310099-74310118 | None:intergenic | 25.0% |
| ! | TAACTCACTCAAATAAGAAA+AGG | + | chr1_1:74310129-74310148 | None:intergenic | 25.0% |
| ! | AAAACACTGAATGAAAAATG+AGG | + | chr1_1:74310312-74310331 | None:intergenic | 25.0% |
| ! | TAGTGTAATGTAATGATGTT+TGG | - | chr1_1:74310476-74310495 | Msa0043210:intron | 25.0% |
| !! | AATACAAATTTTCCTACCAA+TGG | + | chr1_1:74310658-74310677 | None:intergenic | 25.0% |
| ! | AAACATGTCTTCTAATTGAA+TGG | + | chr1_1:74310709-74310728 | None:intergenic | 25.0% |
| ! | ATTCAATTAGAAGACATGTT+TGG | - | chr1_1:74310708-74310727 | Msa0043210:intron | 25.0% |
| ! | ATTGTATAATTACCCTATTC+AGG | - | chr1_1:74310962-74310981 | Msa0043210:intron | 25.0% |
| ! | GGTATAAGATTATTTCAATC+TGG | - | chr1_1:74311001-74311020 | Msa0043210:intron | 25.0% |
| !!! | GTTTGTAATGTTTTGTTAAC+AGG | - | chr1_1:74311169-74311188 | Msa0043210:CDS | 25.0% |
| TGAAAAAGTTTAGTGGTCAA+TGG | + | chr1_1:74309899-74309918 | None:intergenic | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | - | chr1_1:74309900-74309919 | Msa0043210:three_prime_UTR | 30.0% |
| TGTCCTATGAAAAAGTTTAG+TGG | + | chr1_1:74309906-74309925 | None:intergenic | 30.0% | |
| AGGACATTATATCATACCAA+TGG | - | chr1_1:74309920-74309939 | Msa0043210:three_prime_UTR | 30.0% | |
| ! | TTTTCACTCAGTTTTCTATC+AGG | - | chr1_1:74309980-74309999 | Msa0043210:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | - | chr1_1:74310402-74310421 | Msa0043210:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | + | chr1_1:74310534-74310553 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | + | chr1_1:74310575-74310594 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | - | chr1_1:74310578-74310597 | Msa0043210:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | - | chr1_1:74310579-74310598 | Msa0043210:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | - | chr1_1:74310669-74310688 | Msa0043210:CDS | 30.0% | |
| AACTGTTCACTTTGATAAGA+TGG | + | chr1_1:74310784-74310803 | None:intergenic | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | - | chr1_1:74310891-74310910 | Msa0043210:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | + | chr1_1:74310991-74311010 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | - | chr1_1:74311027-74311046 | Msa0043210:intron | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | - | chr1_1:74311193-74311212 | Msa0043210:CDS | 30.0% | |
| !!! | ATTGTTTTGATGACTTTCTG+TGG | - | chr1_1:74311284-74311303 | Msa0043210:five_prime_UTR | 30.0% |
| GCATCAAGTATTACATTACA+TGG | + | chr1_1:74311327-74311346 | None:intergenic | 30.0% | |
| TGAAAAAGTTTAGTGGTCAA+TGG | + | chr1_1:74309899-74309918 | None:intergenic | 30.0% | |
| !!! | TGACCACTAAACTTTTTCAT+AGG | - | chr1_1:74309900-74309919 | Msa0043210:three_prime_UTR | 30.0% |
| TGTCCTATGAAAAAGTTTAG+TGG | + | chr1_1:74309906-74309925 | None:intergenic | 30.0% | |
| AGGACATTATATCATACCAA+TGG | - | chr1_1:74309920-74309939 | Msa0043210:three_prime_UTR | 30.0% | |
| ! | TTTTCACTCAGTTTTCTATC+AGG | - | chr1_1:74309980-74309999 | Msa0043210:CDS | 30.0% |
| CTAAACTAAATACAGCAGTA+AGG | - | chr1_1:74310402-74310421 | Msa0043210:intron | 30.0% | |
| GTGCTTGAATTCTTCATATT+AGG | + | chr1_1:74310534-74310553 | None:intergenic | 30.0% | |
| ! | TCTCTTCATCAAAGTTTTCA+TGG | + | chr1_1:74310575-74310594 | None:intergenic | 30.0% |
| AAACTTTGATGAAGAGATAG+AGG | - | chr1_1:74310578-74310597 | Msa0043210:CDS | 30.0% | |
| AACTTTGATGAAGAGATAGA+GGG | - | chr1_1:74310579-74310598 | Msa0043210:CDS | 30.0% | |
| ATTTGTATTCTTGATCATGG+AGG | - | chr1_1:74310669-74310688 | Msa0043210:CDS | 30.0% | |
| AACTGTTCACTTTGATAAGA+TGG | + | chr1_1:74310784-74310803 | None:intergenic | 30.0% | |
| AAAATGAACCGATACATTCA+TGG | - | chr1_1:74310891-74310910 | Msa0043210:intron | 30.0% | |
| ATCTTATACCAGATACTGAT+TGG | + | chr1_1:74310991-74311010 | None:intergenic | 30.0% | |
| ! | AGAGTACTCATTATTCTACA+AGG | - | chr1_1:74311027-74311046 | Msa0043210:intron | 30.0% |
| AGTTTGTAGAATGTGTGAAA+AGG | - | chr1_1:74311193-74311212 | Msa0043210:CDS | 30.0% | |
| !!! | ATTGTTTTGATGACTTTCTG+TGG | - | chr1_1:74311284-74311303 | Msa0043210:five_prime_UTR | 30.0% |
| GCATCAAGTATTACATTACA+TGG | + | chr1_1:74311327-74311346 | None:intergenic | 30.0% | |
| CTAGATGAATTTGAGTCCAT+TGG | + | chr1_1:74309939-74309958 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | - | chr1_1:74309996-74310015 | Msa0043210:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | - | chr1_1:74310011-74310030 | Msa0043210:intron | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | - | chr1_1:74310023-74310042 | Msa0043210:intron | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | - | chr1_1:74310503-74310522 | Msa0043210:CDS | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | - | chr1_1:74310508-74310527 | Msa0043210:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | + | chr1_1:74310521-74310540 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | - | chr1_1:74310580-74310599 | Msa0043210:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | - | chr1_1:74310627-74310646 | Msa0043210:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | - | chr1_1:74310628-74310647 | Msa0043210:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | + | chr1_1:74310744-74310763 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | - | chr1_1:74311044-74311063 | Msa0043210:intron | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | - | chr1_1:74311199-74311218 | Msa0043210:CDS | 35.0% | |
| !! | TGCGCTGTTTTAGATTGTAA+AGG | - | chr1_1:74311362-74311381 | Msa0043210:five_prime_UTR | 35.0% |
| CTAGATGAATTTGAGTCCAT+TGG | + | chr1_1:74309939-74309958 | None:intergenic | 35.0% | |
| TATCAGGACAAACATGATGA+TGG | - | chr1_1:74309996-74310015 | Msa0043210:CDS | 35.0% | |
| ! | GATGATGGCATAATTGATCT+TGG | - | chr1_1:74310011-74310030 | Msa0043210:intron | 35.0% |
| !! | ATTGATCTTGGTCTTAGTCT+TGG | - | chr1_1:74310023-74310042 | Msa0043210:intron | 35.0% |
| ! | AGTGTATGATGATGACCTTA+TGG | - | chr1_1:74310503-74310522 | Msa0043210:CDS | 35.0% |
| ! | ATGATGATGACCTTATGGAT+TGG | - | chr1_1:74310508-74310527 | Msa0043210:CDS | 35.0% |
| TCATATTAGGCCAATCCATA+AGG | + | chr1_1:74310521-74310540 | None:intergenic | 35.0% | |
| ACTTTGATGAAGAGATAGAG+GGG | - | chr1_1:74310580-74310599 | Msa0043210:CDS | 35.0% | |
| TATGTGAAGGTTAACATGGA+TGG | - | chr1_1:74310627-74310646 | Msa0043210:CDS | 35.0% | |
| ATGTGAAGGTTAACATGGAT+GGG | - | chr1_1:74310628-74310647 | Msa0043210:CDS | 35.0% | |
| ACAAGTGCATTATTGACACA+AGG | + | chr1_1:74310744-74310763 | None:intergenic | 35.0% | |
| ACAAGGATAGTGAAGACAAT+TGG | - | chr1_1:74311044-74311063 | Msa0043210:intron | 35.0% | |
| TAGAATGTGTGAAAAGGCTA+AGG | - | chr1_1:74311199-74311218 | Msa0043210:CDS | 35.0% | |
| !! | TGCGCTGTTTTAGATTGTAA+AGG | - | chr1_1:74311362-74311381 | Msa0043210:five_prime_UTR | 35.0% |
| ! | GTGGAAATTCCAAAAGCACA+TGG | + | chr1_1:74309819-74309838 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | - | chr1_1:74310581-74310600 | Msa0043210:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | - | chr1_1:74310623-74310642 | Msa0043210:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | - | chr1_1:74310629-74310648 | Msa0043210:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | + | chr1_1:74310902-74310921 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | + | chr1_1:74310977-74310996 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | + | chr1_1:74310978-74310997 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | - | chr1_1:74311047-74311066 | Msa0043210:intron | 40.0% | |
| AGGATTGCAAGAAAGAATGC+AGG | - | chr1_1:74311219-74311238 | Msa0043210:CDS | 40.0% | |
| TTGTAAAGGCAAGTCCTTCA+TGG | - | chr1_1:74311376-74311395 | Msa0043210:five_prime_UTR | 40.0% | |
| ! | GTGGAAATTCCAAAAGCACA+TGG | + | chr1_1:74309819-74309838 | None:intergenic | 40.0% |
| CTTTGATGAAGAGATAGAGG+GGG | - | chr1_1:74310581-74310600 | Msa0043210:CDS | 40.0% | |
| GGCTTATGTGAAGGTTAACA+TGG | - | chr1_1:74310623-74310642 | Msa0043210:CDS | 40.0% | |
| TGTGAAGGTTAACATGGATG+GGG | - | chr1_1:74310629-74310648 | Msa0043210:CDS | 40.0% | |
| CGAAGAGTCCATGAATGTAT+CGG | + | chr1_1:74310902-74310921 | None:intergenic | 40.0% | |
| ! | ACTGATTGGCTACCTGAATA+GGG | + | chr1_1:74310977-74310996 | None:intergenic | 40.0% |
| ! | TACTGATTGGCTACCTGAAT+AGG | + | chr1_1:74310978-74310997 | None:intergenic | 40.0% |
| AGGATAGTGAAGACAATTGG+AGG | - | chr1_1:74311047-74311066 | Msa0043210:intron | 40.0% | |
| AGGATTGCAAGAAAGAATGC+AGG | - | chr1_1:74311219-74311238 | Msa0043210:CDS | 40.0% | |
| TTGTAAAGGCAAGTCCTTCA+TGG | - | chr1_1:74311376-74311395 | Msa0043210:five_prime_UTR | 40.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | - | chr1_1:74310614-74310633 | Msa0043210:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | - | chr1_1:74310980-74310999 | Msa0043210:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | - | chr1_1:74311055-74311074 | Msa0043210:intron | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | + | chr1_1:74311087-74311106 | None:intergenic | 45.0% | |
| ! | TGAGAGATGGGCTTATGTGA+AGG | - | chr1_1:74310614-74310633 | Msa0043210:CDS | 45.0% |
| TCAGGTAGCCAATCAGTATC+TGG | - | chr1_1:74310980-74310999 | Msa0043210:intron | 45.0% | |
| GAAGACAATTGGAGGACTGT+TGG | - | chr1_1:74311055-74311074 | Msa0043210:intron | 45.0% | |
| GGATGAACACATACTTCCAC+AGG | + | chr1_1:74311087-74311106 | None:intergenic | 45.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | - | chr1_1:74310602-74310621 | Msa0043210:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | + | chr1_1:74310608-74310627 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | - | chr1_1:74310639-74310658 | Msa0043210:CDS | 50.0% | |
| GGTCCAGAGCAATGAGAGAT+GGG | - | chr1_1:74310602-74310621 | Msa0043210:CDS | 50.0% | |
| AAGCCCATCTCTCATTGCTC+TGG | + | chr1_1:74310608-74310627 | None:intergenic | 50.0% | |
| AACATGGATGGGGTCTCCAT+TGG | - | chr1_1:74310639-74310658 | Msa0043210:CDS | 50.0% | |
| GGGTCCAGAGCAATGAGAGA+TGG | - | chr1_1:74310601-74310620 | Msa0043210:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | - | chr1_1:74310643-74310662 | Msa0043210:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | - | chr1_1:74311068-74311087 | Msa0043210:intron | 55.0% |
| GGGTCCAGAGCAATGAGAGA+TGG | - | chr1_1:74310601-74310620 | Msa0043210:CDS | 55.0% | |
| TGGATGGGGTCTCCATTGGT+AGG | - | chr1_1:74310643-74310662 | Msa0043210:CDS | 55.0% | |
| !! | GGACTGTTGGTGATGTCCTG+TGG | - | chr1_1:74311068-74311087 | Msa0043210:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74309808 | 74311407 | 74309808 | ID=Msa0043210;Name=Msa0043210 |
| chr1_1 | mRNA | 74309808 | 74311407 | 74309808 | ID=Msa0043210-mRNA-1;Parent=Msa0043210;Name=Msa0043210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=131|1|1|1|0.75|0.6|5|124|183 |
| chr1_1 | exon | 74309808 | 74309875 | 74309808 | ID=Msa0043210-mRNA-1:exon:25028;Parent=Msa0043210-mRNA-1 |
| chr1_1 | exon | 74309896 | 74310024 | 74309896 | ID=Msa0043210-mRNA-1:exon:25027;Parent=Msa0043210-mRNA-1 |
| chr1_1 | exon | 74310123 | 74310231 | 74310123 | ID=Msa0043210-mRNA-1:exon:25026;Parent=Msa0043210-mRNA-1 |
| chr1_1 | exon | 74310486 | 74310710 | 74310486 | ID=Msa0043210-mRNA-1:exon:25025;Parent=Msa0043210-mRNA-1 |
| chr1_1 | exon | 74311132 | 74311407 | 74311132 | ID=Msa0043210-mRNA-1:exon:25024;Parent=Msa0043210-mRNA-1 |
| chr1_1 | five_prime_UTR | 74311277 | 74311407 | 74311277 | ID=Msa0043210-mRNA-1:five_prime_utr;Parent=Msa0043210-mRNA-1 |
| chr1_1 | CDS | 74311132 | 74311276 | 74311132 | ID=Msa0043210-mRNA-1:cds;Parent=Msa0043210-mRNA-1 |
| chr1_1 | CDS | 74310486 | 74310710 | 74310486 | ID=Msa0043210-mRNA-1:cds;Parent=Msa0043210-mRNA-1 |
| chr1_1 | CDS | 74310123 | 74310231 | 74310123 | ID=Msa0043210-mRNA-1:cds;Parent=Msa0043210-mRNA-1 |
| chr1_1 | CDS | 74309952 | 74310024 | 74309952 | ID=Msa0043210-mRNA-1:cds;Parent=Msa0043210-mRNA-1 |
| chr1_1 | three_prime_UTR | 74309896 | 74309951 | 74309896 | ID=Msa0043210-mRNA-1:three_prime_utr;Parent=Msa0043210-mRNA-1 |
| chr1_1 | three_prime_UTR | 74309808 | 74309875 | 74309808 | ID=Msa0043210-mRNA-1:three_prime_utr;Parent=Msa0043210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
