AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041530 MtrunA17_Chr7g0268681 95.812 191 7 1 1 190 1 191 4.79e-132 368
Msa1041530 MtrunA17_Chr4g0066721 42.938 177 90 2 1 166 1 177 1.13e-44 147
Msa1041530 MtrunA17_Chr2g0286341 44.242 165 85 2 31 189 26 189 6.96e-39 131
Msa1041530 MtrunA17_Chr4g0066711 34.783 161 95 4 26 181 26 181 1.48e-22 89.7
Msa1041530 MtrunA17_Chr8g0381001 30.994 171 108 4 2 166 4 170 8.99e-21 85.1
Msa1041530 MtrunA17_Chr4g0042551 29.560 159 107 3 21 177 52 207 2.69e-17 76.6
Msa1041530 MtrunA17_Chr2g0303151 29.452 146 97 2 45 184 44 189 8.89e-16 72.0
Msa1041530 MtrunA17_Chr5g0417761 28.571 154 105 3 26 177 26 176 5.19e-15 69.7
Msa1041530 MtrunA17_Chr4g0021111 27.950 161 106 3 21 181 1 151 1.33e-14 68.2
Msa1041530 MtrunA17_Chr7g0217691 27.500 160 111 3 20 177 20 176 9.65e-14 66.2
Msa1041530 MtrunA17_Chr7g0251531 29.078 141 94 3 31 169 33 169 1.83e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041530 AT4G15630.1 39.267 191 109 2 1 185 1 190 2.43e-42 140
Msa1041530 AT4G15620.1 37.895 190 111 2 1 184 1 189 3.85e-39 132
Msa1041530 AT4G15610.1 30.994 171 114 3 1 167 1 171 4.36e-23 91.7
Msa1041530 AT3G06390.1 34.074 135 85 2 29 159 38 172 1.31e-17 77.4
Msa1041530 AT5G44550.1 33.125 160 99 3 32 184 22 180 6.65e-17 75.5
Msa1041530 AT4G15610.2 31.532 111 70 2 63 167 5 115 2.67e-16 72.4
Msa1041530 AT4G20390.1 36.090 133 79 3 32 158 22 154 1.06e-15 72.0
Msa1041530 AT5G15290.1 27.211 147 100 3 21 164 21 163 4.00e-15 70.5
Msa1041530 AT1G14160.1 27.607 163 115 3 26 187 49 209 2.75e-12 63.2
Msa1041530 AT4G16442.1 27.273 176 115 4 17 185 2 171 2.19e-11 60.5

Find 48 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATGTGTTATTTATTCT+AGG 0.225804 7_1:+79114582 Msa1041530:three_prime_UTR
TTCAAAGAGTACTTACTATA+TGG 0.228595 7_1:+79112765 Msa1041530:exon
GCTACTATCATTGTGGGTTT+TGG 0.265618 7_1:+79112910 Msa1041530:CDS
GATGTGTTGCTTAGGGTTCT+TGG 0.291243 7_1:+79112868 Msa1041530:CDS
GAGAGTGAGCCACAAGTAAA+AGG 0.319910 7_1:-79114508 None:intergenic
GCTTTGGTTCTATCTATCAT+TGG 0.323071 7_1:+79114473 Msa1041530:CDS
ACCATCTTCTAAAATAAAAT+AGG 0.330418 7_1:-79114767 None:intergenic
TTCATATGCTGCAATTTCTA+TGG 0.345306 7_1:+79114247 Msa1041530:CDS
CACTGCACCAGCAGCTCCAT+TGG 0.363063 7_1:-79114363 None:intergenic
CATCCACACTTGTCTTTGAC+TGG 0.380763 7_1:-79112792 None:intergenic
TCTAGTTTGATCTATAATAA+TGG 0.389846 7_1:-79114541 None:intergenic
AATGCTAGACCTAGTTATAA+TGG 0.390891 7_1:+79114325 Msa1041530:CDS
GTGTTTATGATGTGTTGCTT+AGG 0.399152 7_1:+79112860 Msa1041530:CDS
CTCACTGCTACTATCATTGT+GGG 0.403424 7_1:+79112904 Msa1041530:CDS
GCTGGTGCAGTGGGAGTGTT+AGG 0.413062 7_1:+79114374 Msa1041530:CDS
AATGAGTAAGGTGGGGAGGT+TGG 0.416808 7_1:-79112636 None:intergenic
TCAAAGAGTACTTACTATAT+GGG 0.423525 7_1:+79112766 Msa1041530:exon
TTCTCAGCCAATGGAGCTGC+TGG 0.424568 7_1:+79114356 Msa1041530:CDS
TCACAGCGATGTGAAGGTTA+TGG 0.427097 7_1:+79112819 Msa1041530:CDS
AACAGTCATGTGACGACAAT+AGG 0.431776 7_1:-79114450 None:intergenic
TGTTTATGATGTGTTGCTTA+GGG 0.433057 7_1:+79112861 Msa1041530:CDS
GATCTATGAGTGAATGAGTA+AGG 0.449237 7_1:-79112648 None:intergenic
TATGAGTGAATGAGTAAGGT+GGG 0.466763 7_1:-79112644 None:intergenic
TTCTTGGTGACAAATGCTAT+AGG 0.474689 7_1:+79114221 Msa1041530:CDS
TCGTCACATGACTGTTGCTT+TGG 0.482039 7_1:+79114457 Msa1041530:CDS
TCTCACTGCTACTATCATTG+TGG 0.489600 7_1:+79112903 Msa1041530:CDS
AAATAGTAGTAAGATTAGAA+AGG 0.493617 7_1:-79112673 None:intergenic
AAGGAAACTCGCACGTGCAA+TGG 0.499701 7_1:+79114402 Msa1041530:CDS
GGAGGTTGGAAATGCATTCA+AGG 0.503857 7_1:-79112622 None:intergenic
CAGTCAAAGACAAGTGTGGA+TGG 0.535899 7_1:+79112793 Msa1041530:CDS
TGTGTAAGGAACGTTAAAGT+AGG 0.536097 7_1:-79112707 None:intergenic
GCATTACTCTTCTCAGCCAA+TGG 0.539824 7_1:+79114347 Msa1041530:CDS
AATGGAGCTGCTGGTGCAGT+GGG 0.549722 7_1:+79114365 Msa1041530:CDS
ATTCAAAGCTACTGCTAAGT+GGG 0.553173 7_1:+79112969 Msa1041530:CDS
AACACATTAAATATACATGT+AGG 0.554156 7_1:+79112586 None:intergenic
TTAGCAAACTCACTTAATAG+AGG 0.559874 7_1:-79114684 None:intergenic
CAATGGAGCTGCTGGTGCAG+TGG 0.564486 7_1:+79114364 Msa1041530:CDS
CTATGAGTGAATGAGTAAGG+TGG 0.567635 7_1:-79112645 None:intergenic
AATTCAAAGCTACTGCTAAG+TGG 0.570996 7_1:+79112968 Msa1041530:CDS
ACACATTAAATATACATGTA+GGG 0.571629 7_1:+79112587 None:intergenic
GTGGGAGTGTTAGGACAGAA+AGG 0.578933 7_1:+79114383 Msa1041530:CDS
TCAACAATTGCAAGAACCAG+TGG 0.593273 7_1:+79114275 Msa1041530:CDS
TGGAGTTCACAGCGATGTGA+AGG 0.594175 7_1:+79112813 Msa1041530:CDS
AGAGTAATGCCATTATAACT+AGG 0.597714 7_1:-79114334 None:intergenic
AAACCAGTCAAAGACAAGTG+TGG 0.653780 7_1:+79112789 Msa1041530:CDS
AGTGAATGAGTAAGGTGGGG+AGG 0.659446 7_1:-79112640 None:intergenic
ATGAGTGAATGAGTAAGGTG+GGG 0.661888 7_1:-79112643 None:intergenic
CACAAGTAAAAGGAAGACAG+TGG 0.729118 7_1:-79114498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATTGTAAAAGAA+AGG - chr7_1:79113243-79113262 None:intergenic 10.0%
!! AGTTACTAAAAATAAAATAA+AGG - chr7_1:79113499-79113518 None:intergenic 10.0%
!! TATAATATGTTAGTTAATAA+CGG + chr7_1:79113518-79113537 Msa1041530:intron 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_1:79113814-79113833 None:intergenic 10.0%
!!! AAGTTGTTTTTATTAAATAT+AGG + chr7_1:79114640-79114659 Msa1041530:three_prime_UTR 10.0%
!! TTTAAAAAATTGTAAAAGAA+AGG - chr7_1:79113243-79113262 None:intergenic 10.0%
!! AGTTACTAAAAATAAAATAA+AGG - chr7_1:79113499-79113518 None:intergenic 10.0%
!! TATAATATGTTAGTTAATAA+CGG + chr7_1:79113518-79113537 Msa1041530:intron 10.0%
!!! TTTTTCTTCAAAAAAATTAA+TGG - chr7_1:79113814-79113833 None:intergenic 10.0%
!!! AAGTTGTTTTTATTAAATAT+AGG + chr7_1:79114640-79114659 Msa1041530:three_prime_UTR 10.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_1:79112733-79112752 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_1:79113057-79113076 Msa1041530:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_1:79113058-79113077 Msa1041530:intron 15.0%
!! TTTCATTAACAAATGTTATA+AGG + chr7_1:79113181-79113200 Msa1041530:intron 15.0%
!! TTCATTAACAAATGTTATAA+GGG + chr7_1:79113182-79113201 Msa1041530:intron 15.0%
!!! TTTTTTTTTGAAAATGTTTC+TGG + chr7_1:79113303-79113322 Msa1041530:intron 15.0%
!!! GTATATAGTTTTGAAAATTT+AGG - chr7_1:79113405-79113424 None:intergenic 15.0%
!!! AAATGTTTTAAGAAAGTAAA+TGG + chr7_1:79113428-79113447 Msa1041530:intron 15.0%
!! CAAAAAAATAAAAACACTAT+AGG - chr7_1:79113474-79113493 None:intergenic 15.0%
!!! ATATATTGATTGATTACTAA+TGG - chr7_1:79113587-79113606 None:intergenic 15.0%
!! ATACATTTATATTCCAAATA+GGG - chr7_1:79113962-79113981 None:intergenic 15.0%
!! AATACATTTATATTCCAAAT+AGG - chr7_1:79113963-79113982 None:intergenic 15.0%
!!! TATTTGGAATATAAATGTAT+TGG + chr7_1:79113962-79113981 Msa1041530:intron 15.0%
!! AAAAAAATATAAAACAAACG+AGG - chr7_1:79114151-79114170 None:intergenic 15.0%
!!! ATATTTAGTAGAATAGTTTT+TGG - chr7_1:79112733-79112752 None:intergenic 15.0%
!!! ATTTAGTTTTTGAAATGTTA+AGG + chr7_1:79113057-79113076 Msa1041530:intron 15.0%
!!! TTTAGTTTTTGAAATGTTAA+GGG + chr7_1:79113058-79113077 Msa1041530:intron 15.0%
!! TTTCATTAACAAATGTTATA+AGG + chr7_1:79113181-79113200 Msa1041530:intron 15.0%
!! TTCATTAACAAATGTTATAA+GGG + chr7_1:79113182-79113201 Msa1041530:intron 15.0%
!!! TTTTTTTTTGAAAATGTTTC+TGG + chr7_1:79113303-79113322 Msa1041530:intron 15.0%
!!! GTATATAGTTTTGAAAATTT+AGG - chr7_1:79113405-79113424 None:intergenic 15.0%
!!! AAATGTTTTAAGAAAGTAAA+TGG + chr7_1:79113428-79113447 Msa1041530:intron 15.0%
!! CAAAAAAATAAAAACACTAT+AGG - chr7_1:79113474-79113493 None:intergenic 15.0%
!!! ATATATTGATTGATTACTAA+TGG - chr7_1:79113587-79113606 None:intergenic 15.0%
!! ATACATTTATATTCCAAATA+GGG - chr7_1:79113962-79113981 None:intergenic 15.0%
!! AATACATTTATATTCCAAAT+AGG - chr7_1:79113963-79113982 None:intergenic 15.0%
!!! TATTTGGAATATAAATGTAT+TGG + chr7_1:79113962-79113981 Msa1041530:intron 15.0%
!! AAAAAAATATAAAACAAACG+AGG - chr7_1:79114151-79114170 None:intergenic 15.0%
!! AAATAGTAGTAAGATTAGAA+AGG - chr7_1:79112676-79112695 None:intergenic 20.0%
!! TCAAAAACTAAATTATCTAG+TGG - chr7_1:79113050-79113069 None:intergenic 20.0%
!!! TTTCTTAATTAGTGCTATTA+GGG - chr7_1:79113135-79113154 None:intergenic 20.0%
!!! TTTTCTTAATTAGTGCTATT+AGG - chr7_1:79113136-79113155 None:intergenic 20.0%
!! AAAAAATTGTAAAAGAAAGG+TGG - chr7_1:79113240-79113259 None:intergenic 20.0%
!! AGATAATGTAGTGAATATTT+GGG - chr7_1:79113352-79113371 None:intergenic 20.0%
!! AAGATAATGTAGTGAATATT+TGG - chr7_1:79113353-79113372 None:intergenic 20.0%
!!! GATGAATTACTTTTTTTGAA+AGG - chr7_1:79113726-79113745 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_1:79113844-79113863 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_1:79113916-79113935 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_1:79113921-79113940 Msa1041530:intron 20.0%
!!! ATGTATTGGTATTTTTTAAG+AGG + chr7_1:79113976-79113995 Msa1041530:intron 20.0%
!!! TCTAGTTTGATCTATAATAA+TGG - chr7_1:79114544-79114563 None:intergenic 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_1:79114582-79114601 Msa1041530:three_prime_UTR 20.0%
!!! TTGCTTCTTGTTTTTTATAT+GGG - chr7_1:79114732-79114751 None:intergenic 20.0%
!!! TTTGCTTCTTGTTTTTTATA+TGG - chr7_1:79114733-79114752 None:intergenic 20.0%
!!! TCCTATTTTATTTTAGAAGA+TGG + chr7_1:79114766-79114785 Msa1041530:three_prime_UTR 20.0%
!!! ACCATCTTCTAAAATAAAAT+AGG - chr7_1:79114770-79114789 None:intergenic 20.0%
!!! ATTTTATTTTAGAAGATGGT+AGG + chr7_1:79114770-79114789 Msa1041530:three_prime_UTR 20.0%
!! AAATAGTAGTAAGATTAGAA+AGG - chr7_1:79112676-79112695 None:intergenic 20.0%
!! TCAAAAACTAAATTATCTAG+TGG - chr7_1:79113050-79113069 None:intergenic 20.0%
!!! TTTCTTAATTAGTGCTATTA+GGG - chr7_1:79113135-79113154 None:intergenic 20.0%
!!! TTTTCTTAATTAGTGCTATT+AGG - chr7_1:79113136-79113155 None:intergenic 20.0%
!! AAAAAATTGTAAAAGAAAGG+TGG - chr7_1:79113240-79113259 None:intergenic 20.0%
!! AGATAATGTAGTGAATATTT+GGG - chr7_1:79113352-79113371 None:intergenic 20.0%
!! AAGATAATGTAGTGAATATT+TGG - chr7_1:79113353-79113372 None:intergenic 20.0%
!!! GATGAATTACTTTTTTTGAA+AGG - chr7_1:79113726-79113745 None:intergenic 20.0%
!! TAATGACAGACTTTAATTAA+TGG - chr7_1:79113844-79113863 None:intergenic 20.0%
!! ATAAATAAAGTGATGTTGAT+TGG - chr7_1:79113916-79113935 None:intergenic 20.0%
!!! CATCACTTTATTTATCATAT+TGG + chr7_1:79113921-79113940 Msa1041530:intron 20.0%
!!! ATGTATTGGTATTTTTTAAG+AGG + chr7_1:79113976-79113995 Msa1041530:intron 20.0%
!!! TCTAGTTTGATCTATAATAA+TGG - chr7_1:79114544-79114563 None:intergenic 20.0%
!!! GTTAATGTGTTATTTATTCT+AGG + chr7_1:79114582-79114601 Msa1041530:three_prime_UTR 20.0%
!!! TTGCTTCTTGTTTTTTATAT+GGG - chr7_1:79114732-79114751 None:intergenic 20.0%
!!! TTTGCTTCTTGTTTTTTATA+TGG - chr7_1:79114733-79114752 None:intergenic 20.0%
!!! TCCTATTTTATTTTAGAAGA+TGG + chr7_1:79114766-79114785 Msa1041530:three_prime_UTR 20.0%
!!! ACCATCTTCTAAAATAAAAT+AGG - chr7_1:79114770-79114789 None:intergenic 20.0%
!!! ATTTTATTTTAGAAGATGGT+AGG + chr7_1:79114770-79114789 Msa1041530:three_prime_UTR 20.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_1:79112765-79112784 Msa1041530:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_1:79112766-79112785 Msa1041530:exon 25.0%
!! TGTTTTGTATTTTCCTTCAT+AGG + chr7_1:79113094-79113113 Msa1041530:intron 25.0%
! AATGAAAGGAAAATGCTAAA+GGG - chr7_1:79113210-79113229 None:intergenic 25.0%
! AAATGAAAGGAAAATGCTAA+AGG - chr7_1:79113211-79113230 None:intergenic 25.0%
!! CGGTATATTTTTCATTCAAA+AGG + chr7_1:79113538-79113557 Msa1041530:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_1:79113901-79113920 None:intergenic 25.0%
!!! TTTTTAAGAGGTGTGATATT+TGG + chr7_1:79113988-79114007 Msa1041530:intron 25.0%
!!! TTTTATAAAGTGTCGAATAC+AGG - chr7_1:79114030-79114049 None:intergenic 25.0%
!!! TTCAAAGAGTACTTACTATA+TGG + chr7_1:79112765-79112784 Msa1041530:exon 25.0%
!!! TCAAAGAGTACTTACTATAT+GGG + chr7_1:79112766-79112785 Msa1041530:exon 25.0%
!! TGTTTTGTATTTTCCTTCAT+AGG + chr7_1:79113094-79113113 Msa1041530:intron 25.0%
! AATGAAAGGAAAATGCTAAA+GGG - chr7_1:79113210-79113229 None:intergenic 25.0%
! AAATGAAAGGAAAATGCTAA+AGG - chr7_1:79113211-79113230 None:intergenic 25.0%
!! CGGTATATTTTTCATTCAAA+AGG + chr7_1:79113538-79113557 Msa1041530:intron 25.0%
!! TTGATTGGTTAAGCTTTAAT+GGG - chr7_1:79113901-79113920 None:intergenic 25.0%
!!! TTTTTAAGAGGTGTGATATT+TGG + chr7_1:79113988-79114007 Msa1041530:intron 25.0%
!!! TTTTATAAAGTGTCGAATAC+AGG - chr7_1:79114030-79114049 None:intergenic 25.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_1:79112724-79112743 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_1:79112861-79112880 Msa1041530:CDS 30.0%
! TATTTGGGATAAAGAGAAGA+TGG - chr7_1:79113337-79113356 None:intergenic 30.0%
ACAATTTCACAAAGATGCAT+TGG + chr7_1:79113754-79113773 Msa1041530:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_1:79113902-79113921 None:intergenic 30.0%
CATTTATATTCCAAATAGGG+AGG - chr7_1:79113959-79113978 None:intergenic 30.0%
!!! ATAGTGTTGATGTCAGATTT+TGG + chr7_1:79114124-79114143 Msa1041530:intron 30.0%
!!! TAGTGTTGATGTCAGATTTT+GGG + chr7_1:79114125-79114144 Msa1041530:intron 30.0%
!! CAGTCACTTTGAAATTACTT+AGG - chr7_1:79114180-79114199 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_1:79114205-79114224 Msa1041530:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_1:79114247-79114266 Msa1041530:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_1:79114325-79114344 Msa1041530:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_1:79114337-79114356 None:intergenic 30.0%
TTAGCAAACTCACTTAATAG+AGG - chr7_1:79114687-79114706 None:intergenic 30.0%
!!! AGAATAGTTTTTGGTGTGTA+AGG - chr7_1:79112724-79112743 None:intergenic 30.0%
!! TGTTTATGATGTGTTGCTTA+GGG + chr7_1:79112861-79112880 Msa1041530:CDS 30.0%
! TATTTGGGATAAAGAGAAGA+TGG - chr7_1:79113337-79113356 None:intergenic 30.0%
ACAATTTCACAAAGATGCAT+TGG + chr7_1:79113754-79113773 Msa1041530:intron 30.0%
! GTTGATTGGTTAAGCTTTAA+TGG - chr7_1:79113902-79113921 None:intergenic 30.0%
CATTTATATTCCAAATAGGG+AGG - chr7_1:79113959-79113978 None:intergenic 30.0%
!!! ATAGTGTTGATGTCAGATTT+TGG + chr7_1:79114124-79114143 Msa1041530:intron 30.0%
!!! TAGTGTTGATGTCAGATTTT+GGG + chr7_1:79114125-79114144 Msa1041530:intron 30.0%
!! CAGTCACTTTGAAATTACTT+AGG - chr7_1:79114180-79114199 None:intergenic 30.0%
! ATTCTCTCTTAGGTTTTTCT+TGG + chr7_1:79114205-79114224 Msa1041530:intron 30.0%
TTCATATGCTGCAATTTCTA+TGG + chr7_1:79114247-79114266 Msa1041530:CDS 30.0%
AATGCTAGACCTAGTTATAA+TGG + chr7_1:79114325-79114344 Msa1041530:CDS 30.0%
AGAGTAATGCCATTATAACT+AGG - chr7_1:79114337-79114356 None:intergenic 30.0%
TTAGCAAACTCACTTAATAG+AGG - chr7_1:79114687-79114706 None:intergenic 30.0%
TATGAGTGAATGAGTAAGGT+GGG - chr7_1:79112647-79112666 None:intergenic 35.0%
GATCTATGAGTGAATGAGTA+AGG - chr7_1:79112651-79112670 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_1:79112710-79112729 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_1:79112860-79112879 Msa1041530:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_1:79112968-79112987 Msa1041530:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_1:79112969-79112988 Msa1041530:CDS 35.0%
! CTTGTTAACTTGACCTATGA+AGG - chr7_1:79113110-79113129 None:intergenic 35.0%
AAGGTGGTAGTACAAATGAA+AGG - chr7_1:79113224-79113243 None:intergenic 35.0%
ATGTACTTAAGCTTGTGAGT+AGG + chr7_1:79113626-79113645 Msa1041530:intron 35.0%
TGTACTTAAGCTTGTGAGTA+GGG + chr7_1:79113627-79113646 Msa1041530:intron 35.0%
TATATTCCAAATAGGGAGGA+AGG - chr7_1:79113955-79113974 None:intergenic 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_1:79114195-79114214 Msa1041530:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_1:79114221-79114240 Msa1041530:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_1:79114294-79114313 None:intergenic 35.0%
!! GCTTTGGTTCTATCTATCAT+TGG + chr7_1:79114473-79114492 Msa1041530:CDS 35.0%
TATGAGTGAATGAGTAAGGT+GGG - chr7_1:79112647-79112666 None:intergenic 35.0%
GATCTATGAGTGAATGAGTA+AGG - chr7_1:79112651-79112670 None:intergenic 35.0%
TGTGTAAGGAACGTTAAAGT+AGG - chr7_1:79112710-79112729 None:intergenic 35.0%
!! GTGTTTATGATGTGTTGCTT+AGG + chr7_1:79112860-79112879 Msa1041530:CDS 35.0%
AATTCAAAGCTACTGCTAAG+TGG + chr7_1:79112968-79112987 Msa1041530:CDS 35.0%
ATTCAAAGCTACTGCTAAGT+GGG + chr7_1:79112969-79112988 Msa1041530:CDS 35.0%
! CTTGTTAACTTGACCTATGA+AGG - chr7_1:79113110-79113129 None:intergenic 35.0%
AAGGTGGTAGTACAAATGAA+AGG - chr7_1:79113224-79113243 None:intergenic 35.0%
ATGTACTTAAGCTTGTGAGT+AGG + chr7_1:79113626-79113645 Msa1041530:intron 35.0%
TGTACTTAAGCTTGTGAGTA+GGG + chr7_1:79113627-79113646 Msa1041530:intron 35.0%
TATATTCCAAATAGGGAGGA+AGG - chr7_1:79113955-79113974 None:intergenic 35.0%
! GACTGACTTTATTCTCTCTT+AGG + chr7_1:79114195-79114214 Msa1041530:intron 35.0%
! TTCTTGGTGACAAATGCTAT+AGG + chr7_1:79114221-79114240 Msa1041530:CDS 35.0%
!!! TAGTGCTGTTTTATTTCCAC+TGG - chr7_1:79114294-79114313 None:intergenic 35.0%
!! GCTTTGGTTCTATCTATCAT+TGG + chr7_1:79114473-79114492 Msa1041530:CDS 35.0%
ATGAGTGAATGAGTAAGGTG+GGG - chr7_1:79112646-79112665 None:intergenic 40.0%
CTATGAGTGAATGAGTAAGG+TGG - chr7_1:79112648-79112667 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_1:79112789-79112808 Msa1041530:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_1:79112903-79112922 Msa1041530:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_1:79112904-79112923 Msa1041530:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_1:79112910-79112929 Msa1041530:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_1:79112915-79112934 Msa1041530:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_1:79113639-79113658 Msa1041530:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_1:79114275-79114294 Msa1041530:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_1:79114453-79114472 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_1:79114501-79114520 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_1:79114499-79114518 Msa1041530:CDS 40.0%
ATGAGTGAATGAGTAAGGTG+GGG - chr7_1:79112646-79112665 None:intergenic 40.0%
CTATGAGTGAATGAGTAAGG+TGG - chr7_1:79112648-79112667 None:intergenic 40.0%
AAACCAGTCAAAGACAAGTG+TGG + chr7_1:79112789-79112808 Msa1041530:CDS 40.0%
TCTCACTGCTACTATCATTG+TGG + chr7_1:79112903-79112922 Msa1041530:CDS 40.0%
CTCACTGCTACTATCATTGT+GGG + chr7_1:79112904-79112923 Msa1041530:CDS 40.0%
! GCTACTATCATTGTGGGTTT+TGG + chr7_1:79112910-79112929 Msa1041530:CDS 40.0%
!! TATCATTGTGGGTTTTGGCA+AGG + chr7_1:79112915-79112934 Msa1041530:CDS 40.0%
TGTGAGTAGGGTTTAGTAGT+TGG + chr7_1:79113639-79113658 Msa1041530:intron 40.0%
TCAACAATTGCAAGAACCAG+TGG + chr7_1:79114275-79114294 Msa1041530:CDS 40.0%
AACAGTCATGTGACGACAAT+AGG - chr7_1:79114453-79114472 None:intergenic 40.0%
CACAAGTAAAAGGAAGACAG+TGG - chr7_1:79114501-79114520 None:intergenic 40.0%
! CACTGTCTTCCTTTTACTTG+TGG + chr7_1:79114499-79114518 Msa1041530:CDS 40.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_1:79112625-79112644 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_1:79112795-79112814 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_1:79112793-79112812 Msa1041530:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_1:79112819-79112838 Msa1041530:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_1:79112868-79112887 Msa1041530:CDS 45.0%
CTAGTGGTAGCATAGTAGAG+AGG - chr7_1:79113034-79113053 None:intergenic 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_1:79114347-79114366 Msa1041530:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_1:79114457-79114476 Msa1041530:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_1:79114511-79114530 None:intergenic 45.0%
GGAGGTTGGAAATGCATTCA+AGG - chr7_1:79112625-79112644 None:intergenic 45.0%
CATCCACACTTGTCTTTGAC+TGG - chr7_1:79112795-79112814 None:intergenic 45.0%
CAGTCAAAGACAAGTGTGGA+TGG + chr7_1:79112793-79112812 Msa1041530:CDS 45.0%
TCACAGCGATGTGAAGGTTA+TGG + chr7_1:79112819-79112838 Msa1041530:CDS 45.0%
!! GATGTGTTGCTTAGGGTTCT+TGG + chr7_1:79112868-79112887 Msa1041530:CDS 45.0%
CTAGTGGTAGCATAGTAGAG+AGG - chr7_1:79113034-79113053 None:intergenic 45.0%
GCATTACTCTTCTCAGCCAA+TGG + chr7_1:79114347-79114366 Msa1041530:CDS 45.0%
! TCGTCACATGACTGTTGCTT+TGG + chr7_1:79114457-79114476 Msa1041530:CDS 45.0%
GAGAGTGAGCCACAAGTAAA+AGG - chr7_1:79114511-79114530 None:intergenic 45.0%
AATGAGTAAGGTGGGGAGGT+TGG - chr7_1:79112639-79112658 None:intergenic 50.0%
AGTGAATGAGTAAGGTGGGG+AGG - chr7_1:79112643-79112662 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_1:79112813-79112832 Msa1041530:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_1:79112924-79112943 Msa1041530:CDS 50.0%
GTAGCTCCTTCCTCCCTATT+TGG + chr7_1:79113946-79113965 Msa1041530:intron 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_1:79114383-79114402 Msa1041530:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_1:79114402-79114421 Msa1041530:CDS 50.0%
AATGAGTAAGGTGGGGAGGT+TGG - chr7_1:79112639-79112658 None:intergenic 50.0%
AGTGAATGAGTAAGGTGGGG+AGG - chr7_1:79112643-79112662 None:intergenic 50.0%
TGGAGTTCACAGCGATGTGA+AGG + chr7_1:79112813-79112832 Msa1041530:CDS 50.0%
!! GGGTTTTGGCAAGGAGACTA+AGG + chr7_1:79112924-79112943 Msa1041530:CDS 50.0%
GTAGCTCCTTCCTCCCTATT+TGG + chr7_1:79113946-79113965 Msa1041530:intron 50.0%
!! GTGGGAGTGTTAGGACAGAA+AGG + chr7_1:79114383-79114402 Msa1041530:CDS 50.0%
AAGGAAACTCGCACGTGCAA+TGG + chr7_1:79114402-79114421 Msa1041530:CDS 50.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_1:79114356-79114375 Msa1041530:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_1:79114365-79114384 Msa1041530:CDS 55.0%
TTCTCAGCCAATGGAGCTGC+TGG + chr7_1:79114356-79114375 Msa1041530:CDS 55.0%
AATGGAGCTGCTGGTGCAGT+GGG + chr7_1:79114365-79114384 Msa1041530:CDS 55.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_1:79114366-79114385 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_1:79114364-79114383 Msa1041530:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_1:79114374-79114393 Msa1041530:CDS 60.0%
CACTGCACCAGCAGCTCCAT+TGG - chr7_1:79114366-79114385 None:intergenic 60.0%
CAATGGAGCTGCTGGTGCAG+TGG + chr7_1:79114364-79114383 Msa1041530:CDS 60.0%
!! GCTGGTGCAGTGGGAGTGTT+AGG + chr7_1:79114374-79114393 Msa1041530:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79112597 79114799 79112597 ID=Msa1041530;Name=Msa1041530
chr7_1 mRNA 79112597 79114799 79112597 ID=Msa1041530-mRNA-1;Parent=Msa1041530;Name=Msa1041530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=187|1|1|1|1|1|2|237|190
chr7_1 exon 79112597 79113010 79112597 ID=Msa1041530-mRNA-1:exon:21266;Parent=Msa1041530-mRNA-1
chr7_1 exon 79114217 79114799 79114217 ID=Msa1041530-mRNA-1:exon:21267;Parent=Msa1041530-mRNA-1
chr7_1 five_prime_UTR 79112597 79112783 79112597 ID=Msa1041530-mRNA-1:five_prime_utr;Parent=Msa1041530-mRNA-1
chr7_1 CDS 79112784 79113010 79112784 ID=Msa1041530-mRNA-1:cds;Parent=Msa1041530-mRNA-1
chr7_1 CDS 79114217 79114562 79114217 ID=Msa1041530-mRNA-1:cds;Parent=Msa1041530-mRNA-1
chr7_1 three_prime_UTR 79114563 79114799 79114563 ID=Msa1041530-mRNA-1:three_prime_utr;Parent=Msa1041530-mRNA-1
Gene Sequence

>Msa1041530

ATGGGAAACCAGTCAAAGACAAGTGTGGATGGAGTTCACAGCGATGTGAAGGTTATGGAGATGAGAACTAGAAGTAGTGTTTATGATGTGTTGCTTAGGGTTCTTGGTTTCTTGCTTACTCTCACTGCTACTATCATTGTGGGTTTTGGCAAGGAGACTAAGGTCATTTCATATGCTTCATTGCAATTCAAAGCTACTGCTAAGTGGGAATATATGTCTGCTATTGTGTTTTTCTTGGTGACAAATGCTATAGGATGTTCATATGCTGCAATTTCTATGGTGATTTCAACAATTGCAAGAACCAGTGGAAATAAAACAGCACTATTGATGATAACAATGCTAGACCTAGTTATAATGGCATTACTCTTCTCAGCCAATGGAGCTGCTGGTGCAGTGGGAGTGTTAGGACAGAAAGGAAACTCGCACGTGCAATGGATGAAAGTGTGCAATGTATTTGATGCCTATTGTCGTCACATGACTGTTGCTTTGGTTCTATCTATCATTGGTTCCACTGTCTTCCTTTTACTTGTGGCTCACTCTCTTTTCAAACTCCATTATTATAGATCAAACTAG

Protein sequence

>Msa1041530

MGNQSKTSVDGVHSDVKVMEMRTRSSVYDVLLRVLGFLLTLTATIIVGFGKETKVISYASLQFKATAKWEYMSAIVFFLVTNAIGCSYAAISMVISTIARTSGNKTALLMITMLDLVIMALLFSANGAAGAVGVLGQKGNSHVQWMKVCNVFDAYCRHMTVALVLSIIGSTVFLLLVAHSLFKLHYYRSN*