Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185110 | sp|Q13442|HAP28_HUMAN | 54.545 | 77 | 35 | 0 | 62 | 138 | 73 | 149 | 1.20e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185110 | G7IFI0 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 4.20e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0156780 | Msa0185110 | 0.807940 | 3.954378e-50 | -8.615850e-47 |
| Msa0185110 | Msa0193200 | 0.842933 | 1.910199e-58 | -8.615850e-47 |
| Msa0185110 | Msa0273060 | 0.955225 | 4.947215e-113 | -8.615850e-47 |
| Msa0185110 | Msa0361040 | 0.809257 | 2.069325e-50 | -8.615850e-47 |
| Msa0185110 | Msa0714200 | 0.806468 | 8.105601e-50 | -8.615850e-47 |
| Msa0185110 | Msa0961200 | 0.805234 | 1.472820e-49 | -8.615850e-47 |
| Msa0185110 | Msa0975460 | 0.805253 | 1.459822e-49 | -8.615850e-47 |
| Msa0185110 | Msa1330910 | 0.802828 | 4.660910e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185110 | MtrunA17_Chr2g0283101 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 8.08e-112 | 314 |
| Msa0185110 | MtrunA17_Chr4g0046271 | 78.125 | 160 | 34 | 1 | 1 | 159 | 1 | 160 | 4.36e-76 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185110 | AT5G46020.1 | 67.857 | 140 | 43 | 2 | 1 | 138 | 1 | 140 | 8.72e-51 | 160 |
Find 52 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATTGTTGATTGAAAA+TGG | 0.175282 | 1_4:-75257132 | Msa0185110:exon |
| TTCAGACTTCTTCTGCTCTT+TGG | 0.210254 | 1_4:+75254784 | None:intergenic |
| TATCTTCATAATGGATCTTA+TGG | 0.258671 | 1_4:-75254663 | Msa0185110:three_prime_UTR |
| TCTCTAGCTTTCAAGTTCTT+TGG | 0.272877 | 1_4:+75255582 | None:intergenic |
| GATCAATCAAAGAAAGATTT+AGG | 0.283638 | 1_4:-75255158 | Msa0185110:intron |
| GTGGAGCCCGAGGAAGTATC+TGG | 0.288324 | 1_4:-75255811 | Msa0185110:CDS |
| CAAGATTTCAAGCCACATTA+TGG | 0.292701 | 1_4:+75254598 | None:intergenic |
| GGGGCTTACGAATGTCTTCC+TGG | 0.310672 | 1_4:+75257060 | None:intergenic |
| CCTTTCACGCCTTGAAAGTT+CGG | 0.349398 | 1_4:+75255454 | None:intergenic |
| AAGATCCATTATGAAGATAA+TGG | 0.364872 | 1_4:+75254667 | None:intergenic |
| GAAGTATCTGGGGATGAATC+TGG | 0.372035 | 1_4:-75255799 | Msa0185110:CDS |
| TTTGTCCATTATCTTCATAA+TGG | 0.374671 | 1_4:-75254672 | Msa0185110:three_prime_UTR |
| AAAAGACAACCGAACTTTCA+AGG | 0.404473 | 1_4:-75255463 | Msa0185110:CDS |
| TGTCTTCCTGGGTAGAAAAC+TGG | 0.421063 | 1_4:+75257072 | None:intergenic |
| CGACTAATTGGAGTAAGATT+AGG | 0.423053 | 1_4:+75254729 | None:intergenic |
| TTGAATTGTTGATTGAAAAT+GGG | 0.452422 | 1_4:-75257131 | Msa0185110:exon |
| AGAAAACTGGCGGCGACCAG+TGG | 0.466800 | 1_4:+75257085 | None:intergenic |
| AGAATTGCAGTGCTAGATAG+AGG | 0.468988 | 1_4:+75254511 | None:intergenic |
| GTGCTAGATAGAGGGTATCC+AGG | 0.478465 | 1_4:+75254520 | None:intergenic |
| TGCATTACATATTACCAACT+TGG | 0.482867 | 1_4:+75254630 | None:intergenic |
| TGAGATTGAAAATCCTAACT+TGG | 0.484016 | 1_4:-75255610 | Msa0185110:CDS |
| TGCTAGATAGAGGGTATCCA+GGG | 0.492549 | 1_4:+75254521 | None:intergenic |
| TACATATTACCAACTTGGTA+TGG | 0.493820 | 1_4:+75254635 | None:intergenic |
| AGAGCAGAAGAAGTCTGAAA+TGG | 0.498965 | 1_4:-75254780 | Msa0185110:CDS |
| CCGAACTTTCAAGGCGTGAA+AGG | 0.511076 | 1_4:-75255454 | Msa0185110:intron |
| GGCTCTTATACGTCAGCAAA+GGG | 0.519392 | 1_4:-75254927 | Msa0185110:CDS |
| TGTTGATTGAAAATGGGAAG+AGG | 0.520448 | 1_4:-75257125 | Msa0185110:exon |
| TTCATCCCCAGATACTTCCT+CGG | 0.529253 | 1_4:+75255804 | None:intergenic |
| GAAAGAAGCTGAGAATGAAG+TGG | 0.539144 | 1_4:-75255830 | Msa0185110:CDS |
| TCATCCCCAGATACTTCCTC+GGG | 0.541459 | 1_4:+75255805 | None:intergenic |
| TTGATGTTGTGCAGAACGAT+TGG | 0.559572 | 1_4:-75254948 | Msa0185110:intron |
| GAAACCTGTCTAAAAGTTCG+AGG | 0.562367 | 1_4:+75256055 | None:intergenic |
| GAGCTCATGAAAGCTATATG+AGG | 0.563002 | 1_4:-75255202 | Msa0185110:CDS |
| TGGAGCCCGAGGAAGTATCT+GGG | 0.570081 | 1_4:-75255810 | Msa0185110:CDS |
| GGGCTTACGAATGTCTTCCT+GGG | 0.577937 | 1_4:+75257061 | None:intergenic |
| TGAGAATGAAGTGGAGCCCG+AGG | 0.580068 | 1_4:-75255821 | Msa0185110:CDS |
| GCAATTATTCCACCATAATG+TGG | 0.580537 | 1_4:-75254610 | Msa0185110:three_prime_UTR |
| TGGCTCTTATACGTCAGCAA+AGG | 0.586434 | 1_4:-75254928 | Msa0185110:CDS |
| AAACGAAATGAAGAGAAAGC+TGG | 0.589158 | 1_4:-75254890 | Msa0185110:intron |
| GAAAACTGGCGGCGACCAGT+GGG | 0.589542 | 1_4:+75257086 | None:intergenic |
| CTAATCTTACTCCAATTAGT+CGG | 0.594618 | 1_4:-75254728 | Msa0185110:three_prime_UTR |
| GATTTCAAGCCACATTATGG+TGG | 0.596397 | 1_4:+75254601 | None:intergenic |
| AAAAGTTCGAGGACGGCTAG+TGG | 0.596889 | 1_4:+75256066 | None:intergenic |
| TATATGAGGCTTCAAGAGCA+AGG | 0.600727 | 1_4:-75255188 | Msa0185110:CDS |
| ATGGTGTTACCATACCAAGT+TGG | 0.607773 | 1_4:-75254644 | Msa0185110:three_prime_UTR |
| AAATTCAAGAGCAAGCCCAC+TGG | 0.611119 | 1_4:-75257101 | Msa0185110:CDS |
| GAATTGCAGTGCTAGATAGA+GGG | 0.628212 | 1_4:+75254512 | None:intergenic |
| CCTGTCTAAAAGTTCGAGGA+CGG | 0.634455 | 1_4:+75256059 | None:intergenic |
| GGAGCCCGAGGAAGTATCTG+GGG | 0.684631 | 1_4:-75255809 | Msa0185110:CDS |
| CTTCCTGGGTAGAAAACTGG+CGG | 0.712794 | 1_4:+75257075 | None:intergenic |
| GCTAGATAGAGGGTATCCAG+GGG | 0.718383 | 1_4:+75254522 | None:intergenic |
| ACACGCAAGTGAATGTTGTG+TGG | 0.729696 | 1_4:-75254752 | Msa0185110:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAACATAAATAATTGA+AGG | + | chr1_4:75256631-75256650 | None:intergenic | 10.0% |
| !! | TCTTAATAAAATCAATCATA+GGG | + | chr1_4:75255254-75255273 | None:intergenic | 15.0% |
| !!! | TTGTTATTCTTATTAATGTA+AGG | - | chr1_4:75255329-75255348 | Msa0185110:intron | 15.0% |
| !! | TGTTATTCTTATTAATGTAA+GGG | - | chr1_4:75255330-75255349 | Msa0185110:intron | 15.0% |
| !!! | GATTAATTTTTATATGGATA+TGG | - | chr1_4:75255675-75255694 | Msa0185110:intron | 15.0% |
| !!! | AAACTATTTATTTGTTTCTA+TGG | - | chr1_4:75255893-75255912 | Msa0185110:intron | 15.0% |
| !! | TAATTTATACAGAAGAAAAA+AGG | - | chr1_4:75255957-75255976 | Msa0185110:intron | 15.0% |
| !!! | ACATTTTTTATTTTTTCAAG+TGG | - | chr1_4:75256238-75256257 | Msa0185110:intron | 15.0% |
| !!! | ATTGAATTGTTGATTGAAAA+TGG | - | chr1_4:75254473-75254492 | Msa0185110:three_prime_UTR | 20.0% |
| !!! | TTGAATTGTTGATTGAAAAT+GGG | - | chr1_4:75254474-75254493 | Msa0185110:three_prime_UTR | 20.0% |
| !! | GTCTTAATAAAATCAATCAT+AGG | + | chr1_4:75255255-75255274 | None:intergenic | 20.0% |
| !! | GTTATTCTTATTAATGTAAG+GGG | - | chr1_4:75255331-75255350 | Msa0185110:intron | 20.0% |
| !!! | AGTGACGATTAATTTTTATA+TGG | - | chr1_4:75255669-75255688 | Msa0185110:intron | 20.0% |
| !!! | TTAATTTGCTTCTTTAAAAG+TGG | - | chr1_4:75256184-75256203 | Msa0185110:intron | 20.0% |
| ! | TAATAAAATATTGTGCCTTG+TGG | - | chr1_4:75254687-75254706 | Msa0185110:three_prime_UTR | 25.0% |
| !!! | CATGTTCATAAACTGTTTTT+TGG | + | chr1_4:75254837-75254856 | None:intergenic | 25.0% |
| ! | GTTATACTAATAATGTATCG+CGG | - | chr1_4:75255062-75255081 | Msa0185110:intron | 25.0% |
| ! | TAAGTTCGAAATTAGAGAAT+TGG | + | chr1_4:75255374-75255393 | None:intergenic | 25.0% |
| !!! | GTTTTCTTTAGAGAAGAAAA+GGG | + | chr1_4:75255438-75255457 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTTAGAGAAGAAA+AGG | + | chr1_4:75255439-75255458 | None:intergenic | 25.0% |
| ! | ATGTAAAATACAGTTAAACG+TGG | + | chr1_4:75255730-75255749 | None:intergenic | 25.0% |
| !! | ACGTTTAACTGTATTTTACA+TGG | - | chr1_4:75255729-75255748 | Msa0185110:intron | 25.0% |
| !!! | AGAATAATGTTATTTTCGTG+TGG | - | chr1_4:75256109-75256128 | Msa0185110:intron | 25.0% |
| ! | AATTCCTTATGTTCTCATAT+TGG | - | chr1_4:75256289-75256308 | Msa0185110:intron | 25.0% |
| ! | ATTCCTTATGTTCTCATATT+GGG | - | chr1_4:75256290-75256309 | Msa0185110:intron | 25.0% |
| ! | GATCAATCAAAGAAAGATTT+AGG | - | chr1_4:75256447-75256466 | Msa0185110:intron | 25.0% |
| !! | CAAACAAAGCATGTTAATTT+TGG | + | chr1_4:75256598-75256617 | None:intergenic | 25.0% |
| !! | CAAAATTAACATGCTTTGTT+TGG | - | chr1_4:75256596-75256615 | Msa0185110:intron | 25.0% |
| ! | TTTGTCCATTATCTTCATAA+TGG | - | chr1_4:75256933-75256952 | Msa0185110:intron | 25.0% |
| ! | AAGATCCATTATGAAGATAA+TGG | + | chr1_4:75256941-75256960 | None:intergenic | 25.0% |
| !!! | TATCTTCATAATGGATCTTA+TGG | - | chr1_4:75256942-75256961 | Msa0185110:intron | 25.0% |
| AAAACCCAGAAAGCAAAAAA+TGG | + | chr1_4:75254575-75254594 | None:intergenic | 30.0% | |
| ATGTCATAAGCCGTTATATT+GGG | - | chr1_4:75254854-75254873 | Msa0185110:intron | 30.0% | |
| TCAGTTATTTAACCAGTTCT+AGG | - | chr1_4:75254932-75254951 | Msa0185110:CDS | 30.0% | |
| CAAATTCTACTACTCTACAA+TGG | - | chr1_4:75255006-75255025 | Msa0185110:intron | 30.0% | |
| TATAACGTGTTGTCAAATAG+TGG | + | chr1_4:75255048-75255067 | None:intergenic | 30.0% | |
| TTAATCATAGAAAGAACCTC+TGG | - | chr1_4:75255478-75255497 | Msa0185110:intron | 30.0% | |
| AAGAAACAATAAGTTTCCAG+AGG | + | chr1_4:75255497-75255516 | None:intergenic | 30.0% | |
| AGTTAAACGTGGAAAGAAAA+TGG | + | chr1_4:75255719-75255738 | None:intergenic | 30.0% | |
| TTCTCAGCTTCTTTCTAATA+AGG | + | chr1_4:75255770-75255789 | None:intergenic | 30.0% | |
| !!! | CACAATCTTTGCATTTTTTG+AGG | - | chr1_4:75255864-75255883 | Msa0185110:intron | 30.0% |
| AGAAGAAAAAAGGAACTCAA+GGG | - | chr1_4:75255967-75255986 | Msa0185110:intron | 30.0% | |
| TGAGATTGAAAATCCTAACT+TGG | - | chr1_4:75255995-75256014 | Msa0185110:intron | 30.0% | |
| !!! | TTCTTTGGTTTTACCAAGTT+AGG | + | chr1_4:75256011-75256030 | None:intergenic | 30.0% |
| !! | CATTACATAGTCATTTTCAG+AGG | - | chr1_4:75256078-75256097 | Msa0185110:CDS | 30.0% |
| TATTGGGCTATTATTGAAAC+TGG | - | chr1_4:75256306-75256325 | Msa0185110:intron | 30.0% | |
| ! | ATGTGATAATGTCAAACGTA+CGG | + | chr1_4:75256526-75256545 | None:intergenic | 30.0% |
| ! | AACAATCAGTTTCATGCTTT+TGG | + | chr1_4:75256784-75256803 | None:intergenic | 30.0% |
| CTAATCTTACTCCAATTAGT+CGG | - | chr1_4:75256877-75256896 | Msa0185110:intron | 30.0% | |
| ! | TACATTTTCATCCGACTAAT+TGG | + | chr1_4:75256891-75256910 | None:intergenic | 30.0% |
| TACATATTACCAACTTGGTA+TGG | + | chr1_4:75256973-75256992 | None:intergenic | 30.0% | |
| TGCATTACATATTACCAACT+TGG | + | chr1_4:75256978-75256997 | None:intergenic | 30.0% | |
| !! | TGCAATTCTTTTAGGAAAGT+AGG | - | chr1_4:75257108-75257127 | Msa0185110:CDS | 30.0% |
| !! | GCAATTCTTTTAGGAAAGTA+GGG | - | chr1_4:75257109-75257128 | Msa0185110:CDS | 30.0% |
| !! | CAATTCTTTTAGGAAAGTAG+GGG | - | chr1_4:75257110-75257129 | Msa0185110:CDS | 30.0% |
| ! | TGTTGATTGAAAATGGGAAG+AGG | - | chr1_4:75254480-75254499 | Msa0185110:three_prime_UTR | 35.0% |
| AGAAAGCAAAAAATGGAGGA+GGG | + | chr1_4:75254568-75254587 | None:intergenic | 35.0% | |
| !!! | TCCTCCATTTTTTGCTTTCT+GGG | - | chr1_4:75254568-75254587 | Msa0185110:three_prime_UTR | 35.0% |
| ATGAAAAACCTTCATCCACA+AGG | + | chr1_4:75254705-75254724 | None:intergenic | 35.0% | |
| CATGTCATAAGCCGTTATAT+TGG | - | chr1_4:75254853-75254872 | Msa0185110:intron | 35.0% | |
| TTGTCAAATAGTGGCTATAG+CGG | + | chr1_4:75255039-75255058 | None:intergenic | 35.0% | |
| AGTATAACACTATGTCGTAG+CGG | + | chr1_4:75255111-75255130 | None:intergenic | 35.0% | |
| AAACCTACTAAGATGTGTAG+AGG | + | chr1_4:75255173-75255192 | None:intergenic | 35.0% | |
| TCTACACATCTTAGTAGGTT+TGG | - | chr1_4:75255172-75255191 | Msa0185110:CDS | 35.0% | |
| ATCTTAGTAGGTTTGGCAAA+GGG | - | chr1_4:75255179-75255198 | Msa0185110:CDS | 35.0% | |
| ATGCTGAGGAAGTTACATAT+TGG | - | chr1_4:75255295-75255314 | Msa0185110:intron | 35.0% | |
| CAGAAGAAAAAAGGAACTCA+AGG | - | chr1_4:75255966-75255985 | Msa0185110:intron | 35.0% | |
| !! | TCTCTAGCTTTCAAGTTCTT+TGG | + | chr1_4:75256026-75256045 | None:intergenic | 35.0% |
| TGAGTTCAACTTACCATGTT+TGG | - | chr1_4:75256054-75256073 | Msa0185110:intron | 35.0% | |
| GACTATGTAATGACCAAACA+TGG | + | chr1_4:75256070-75256089 | None:intergenic | 35.0% | |
| !! | TAGTCATTTTCAGAGGAGTT+TGG | - | chr1_4:75256085-75256104 | Msa0185110:intron | 35.0% |
| AAAAGACAACCGAACTTTCA+AGG | - | chr1_4:75256142-75256161 | Msa0185110:intron | 35.0% | |
| !! | ACACAATCATGCTCTAAAAG+AGG | - | chr1_4:75256215-75256234 | Msa0185110:intron | 35.0% |
| TAGCCCAATATGAGAACATA+AGG | + | chr1_4:75256296-75256315 | None:intergenic | 35.0% | |
| ! | TGTGATAATGTCAAACGTAC+GGG | + | chr1_4:75256525-75256544 | None:intergenic | 35.0% |
| AAACGAAATGAAGAGAAAGC+TGG | - | chr1_4:75256715-75256734 | Msa0185110:intron | 35.0% | |
| CGACTAATTGGAGTAAGATT+AGG | + | chr1_4:75256879-75256898 | None:intergenic | 35.0% | |
| GCAATTATTCCACCATAATG+TGG | - | chr1_4:75256995-75257014 | Msa0185110:intron | 35.0% | |
| CAAGATTTCAAGCCACATTA+TGG | + | chr1_4:75257010-75257029 | None:intergenic | 35.0% | |
| ! | TCTAGCACTGCAATTCTTTT+AGG | - | chr1_4:75257100-75257119 | Msa0185110:CDS | 35.0% |
| GAAAGCAAAAAATGGAGGAG+GGG | + | chr1_4:75254567-75254586 | None:intergenic | 40.0% | |
| CAGAAAGCAAAAAATGGAGG+AGG | + | chr1_4:75254569-75254588 | None:intergenic | 40.0% | |
| !!! | CTCCTCCATTTTTTGCTTTC+TGG | - | chr1_4:75254567-75254586 | Msa0185110:three_prime_UTR | 40.0% |
| ACCCAGAAAGCAAAAAATGG+AGG | + | chr1_4:75254572-75254591 | None:intergenic | 40.0% | |
| ATATTGTGCCTTGTGGATGA+AGG | - | chr1_4:75254694-75254713 | Msa0185110:three_prime_UTR | 40.0% | |
| GCCACATCTTCCCAATATAA+CGG | + | chr1_4:75254867-75254886 | None:intergenic | 40.0% | |
| TATATTGGGAAGATGTGGCT+TGG | - | chr1_4:75254868-75254887 | Msa0185110:intron | 40.0% | |
| TAACGATCACTTCCTAGAAC+TGG | + | chr1_4:75254947-75254966 | None:intergenic | 40.0% | |
| TCACATATTGCGAAGAACAG+CGG | - | chr1_4:75254977-75254996 | Msa0185110:intron | 40.0% | |
| GATCCTCTACACATCTTAGT+AGG | - | chr1_4:75255167-75255186 | Msa0185110:CDS | 40.0% | |
| CATCTTAGTAGGTTTGGCAA+AGG | - | chr1_4:75255178-75255197 | Msa0185110:CDS | 40.0% | |
| !! | AAAAGGGCACAAAAGGGTTT+TGG | + | chr1_4:75255422-75255441 | None:intergenic | 40.0% |
| ! | GAGAAGAAAAGGGCACAAAA+GGG | + | chr1_4:75255428-75255447 | None:intergenic | 40.0% |
| ! | AGAGAAGAAAAGGGCACAAA+AGG | + | chr1_4:75255429-75255448 | None:intergenic | 40.0% |
| GAAACCTGTCTAAAAGTTCG+AGG | + | chr1_4:75255553-75255572 | None:intergenic | 40.0% | |
| TTTGAGGAGAGGAGTAAAAG+GGG | + | chr1_4:75255597-75255616 | None:intergenic | 40.0% | |
| GTTTGAGGAGAGGAGTAAAA+GGG | + | chr1_4:75255598-75255617 | None:intergenic | 40.0% | |
| TGTTTGAGGAGAGGAGTAAA+AGG | + | chr1_4:75255599-75255618 | None:intergenic | 40.0% | |
| AGTGATCACATGCATGTTTG+AGG | + | chr1_4:75255613-75255632 | None:intergenic | 40.0% | |
| GAAAGAAGCTGAGAATGAAG+TGG | - | chr1_4:75255775-75255794 | Msa0185110:CDS | 40.0% | |
| !!! | TGTTATTTTCGTGTGGATGC+AGG | - | chr1_4:75256116-75256135 | Msa0185110:intron | 40.0% |
| ! | ATTCCTTCTTGTTTGCAGAG+AGG | - | chr1_4:75256365-75256384 | Msa0185110:intron | 40.0% |
| GAGCTCATGAAAGCTATATG+AGG | - | chr1_4:75256403-75256422 | Msa0185110:intron | 40.0% | |
| TATATGAGGCTTCAAGAGCA+AGG | - | chr1_4:75256417-75256436 | Msa0185110:intron | 40.0% | |
| TTGATGTTGTGCAGAACGAT+TGG | - | chr1_4:75256657-75256676 | Msa0185110:intron | 40.0% | |
| TTCAGACTTCTTCTGCTCTT+TGG | + | chr1_4:75256824-75256843 | None:intergenic | 40.0% | |
| AGAGCAGAAGAAGTCTGAAA+TGG | - | chr1_4:75256825-75256844 | Msa0185110:intron | 40.0% | |
| !! | ATGGTGTTACCATACCAAGT+TGG | - | chr1_4:75256961-75256980 | Msa0185110:intron | 40.0% |
| GATTTCAAGCCACATTATGG+TGG | + | chr1_4:75257007-75257026 | None:intergenic | 40.0% | |
| ! | ACTTTTCTTCACATCGATGC+TGG | - | chr1_4:75257041-75257060 | Msa0185110:intron | 40.0% |
| ! | CTTTTCTTCACATCGATGCT+GGG | - | chr1_4:75257042-75257061 | Msa0185110:intron | 40.0% |
| GAATTGCAGTGCTAGATAGA+GGG | + | chr1_4:75257096-75257115 | None:intergenic | 40.0% | |
| AGAATTGCAGTGCTAGATAG+AGG | + | chr1_4:75257097-75257116 | None:intergenic | 40.0% | |
| AAATTCAAGAGCAAGCCCAC+TGG | - | chr1_4:75254504-75254523 | Msa0185110:three_prime_UTR | 45.0% | |
| TGTCTTCCTGGGTAGAAAAC+TGG | + | chr1_4:75254536-75254555 | None:intergenic | 45.0% | |
| GCCGTTATATTGGGAAGATG+TGG | - | chr1_4:75254863-75254882 | Msa0185110:intron | 45.0% | |
| ! | TCTGATTTCTCAGTGCCACT+TGG | + | chr1_4:75254899-75254918 | None:intergenic | 45.0% |
| ! | TGGCACTGAGAAATCAGACA+GGG | - | chr1_4:75254901-75254920 | Msa0185110:CDS | 45.0% |
| ! | ACACTATGTCGTAGCGGAAT+TGG | + | chr1_4:75255105-75255124 | None:intergenic | 45.0% |
| TCACCAGTGTCGTCAAATAG+TGG | + | chr1_4:75255138-75255157 | None:intergenic | 45.0% | |
| AGGTTTGGCAAAGGGAAATG+TGG | - | chr1_4:75255187-75255206 | Msa0185110:CDS | 45.0% | |
| GGTTTGGCAAAGGGAAATGT+GGG | - | chr1_4:75255188-75255207 | Msa0185110:CDS | 45.0% | |
| GTTTGGCAAAGGGAAATGTG+GGG | - | chr1_4:75255189-75255208 | Msa0185110:CDS | 45.0% | |
| !! | CTTTTGACTACTGCAGTTGC+TGG | - | chr1_4:75255514-75255533 | Msa0185110:intron | 45.0% |
| CCTGTCTAAAAGTTCGAGGA+CGG | + | chr1_4:75255549-75255568 | None:intergenic | 45.0% | |
| AGTAAAAGGGGGAAGAGGAA+AGG | + | chr1_4:75255585-75255604 | None:intergenic | 45.0% | |
| TTGAGGAGAGGAGTAAAAGG+GGG | + | chr1_4:75255596-75255615 | None:intergenic | 45.0% | |
| TCACATGCATGTTTGAGGAG+AGG | + | chr1_4:75255608-75255627 | None:intergenic | 45.0% | |
| TTCATCCCCAGATACTTCCT+CGG | + | chr1_4:75255804-75255823 | None:intergenic | 45.0% | |
| ! | GAAGTATCTGGGGATGAATC+TGG | - | chr1_4:75255806-75255825 | Msa0185110:CDS | 45.0% |
| CCTTTCACGCCTTGAAAGTT+CGG | + | chr1_4:75256154-75256173 | None:intergenic | 45.0% | |
| TCTCCTCTCTGCAAACAAGA+AGG | + | chr1_4:75256371-75256390 | None:intergenic | 45.0% | |
| TGGCTCTTATACGTCAGCAA+AGG | - | chr1_4:75256677-75256696 | Msa0185110:intron | 45.0% | |
| GGCTCTTATACGTCAGCAAA+GGG | - | chr1_4:75256678-75256697 | Msa0185110:intron | 45.0% | |
| ACACGCAAGTGAATGTTGTG+TGG | - | chr1_4:75256853-75256872 | Msa0185110:intron | 45.0% | |
| ! | CAGCTTATTGTTTTCTCCCC+TGG | - | chr1_4:75257067-75257086 | Msa0185110:intron | 45.0% |
| !! | TGCTAGATAGAGGGTATCCA+GGG | + | chr1_4:75257087-75257106 | None:intergenic | 45.0% |
| CTTCCTGGGTAGAAAACTGG+CGG | + | chr1_4:75254533-75254552 | None:intergenic | 50.0% | |
| GGGCTTACGAATGTCTTCCT+GGG | + | chr1_4:75254547-75254566 | None:intergenic | 50.0% | |
| ! | GTGGCACTGAGAAATCAGAC+AGG | - | chr1_4:75254900-75254919 | Msa0185110:CDS | 50.0% |
| CCAGTGTCGTCAAATAGTGG+TGG | + | chr1_4:75255135-75255154 | None:intergenic | 50.0% | |
| CCACCACTATTTGACGACAC+TGG | - | chr1_4:75255132-75255151 | Msa0185110:intron | 50.0% | |
| AGTTCAGTGCGTCAATGCTG+AGG | - | chr1_4:75255281-75255300 | Msa0185110:intron | 50.0% | |
| AAAAGTTCGAGGACGGCTAG+TGG | + | chr1_4:75255542-75255561 | None:intergenic | 50.0% | |
| ! | CCGTCCTCGAACTTTTAGAC+AGG | - | chr1_4:75255546-75255565 | Msa0185110:intron | 50.0% |
| GGAAGAGGAAAGGATGCAGA+AGG | + | chr1_4:75255575-75255594 | None:intergenic | 50.0% | |
| AGAGGAGTAAAAGGGGGAAG+AGG | + | chr1_4:75255590-75255609 | None:intergenic | 50.0% | |
| TCATCCCCAGATACTTCCTC+GGG | + | chr1_4:75255803-75255822 | None:intergenic | 50.0% | |
| CCGAACTTTCAAGGCGTGAA+AGG | - | chr1_4:75256151-75256170 | Msa0185110:intron | 50.0% | |
| !! | GCTAGATAGAGGGTATCCAG+GGG | + | chr1_4:75257086-75257105 | None:intergenic | 50.0% |
| !! | GTGCTAGATAGAGGGTATCC+AGG | + | chr1_4:75257088-75257107 | None:intergenic | 50.0% |
| GGGGCTTACGAATGTCTTCC+TGG | + | chr1_4:75254548-75254567 | None:intergenic | 55.0% | |
| ! | TTGGGAAGATGTGGCTTGGC+TGG | - | chr1_4:75254872-75254891 | Msa0185110:intron | 55.0% |
| TGAGAATGAAGTGGAGCCCG+AGG | - | chr1_4:75255784-75255803 | Msa0185110:CDS | 55.0% | |
| !! | TGGAGCCCGAGGAAGTATCT+GGG | - | chr1_4:75255795-75255814 | Msa0185110:CDS | 55.0% |
| GAAAACTGGCGGCGACCAGT+GGG | + | chr1_4:75254522-75254541 | None:intergenic | 60.0% | |
| AGAAAACTGGCGGCGACCAG+TGG | + | chr1_4:75254523-75254542 | None:intergenic | 60.0% | |
| ! | TCGCCGCCAGTTTTCTACCC+AGG | - | chr1_4:75254527-75254546 | Msa0185110:three_prime_UTR | 60.0% |
| ! | TGTGGCTTGGCTGGTCCAAG+TGG | - | chr1_4:75254881-75254900 | Msa0185110:intron | 60.0% |
| !! | GTGGAGCCCGAGGAAGTATC+TGG | - | chr1_4:75255794-75255813 | Msa0185110:CDS | 60.0% |
| !! | GGAGCCCGAGGAAGTATCTG+GGG | - | chr1_4:75255796-75255815 | Msa0185110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 75254468 | 75257159 | 75254468 | ID=Msa0185110;Name=Msa0185110 |
| chr1_4 | mRNA | 75254468 | 75257159 | 75254468 | ID=Msa0185110-mRNA-1;Parent=Msa0185110;Name=Msa0185110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|1|1|8|295|165 |
| chr1_4 | exon | 75254468 | 75254806 | 75254468 | ID=Msa0185110-mRNA-1:exon:25563;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75254891 | 75254956 | 75254891 | ID=Msa0185110-mRNA-1:exon:25562;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75255159 | 75255244 | 75255159 | ID=Msa0185110-mRNA-1:exon:25561;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75255455 | 75255489 | 75255455 | ID=Msa0185110-mRNA-1:exon:25560;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75255575 | 75255658 | 75255575 | ID=Msa0185110-mRNA-1:exon:25559;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75255774 | 75255851 | 75255774 | ID=Msa0185110-mRNA-1:exon:25558;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75256060 | 75256097 | 75256060 | ID=Msa0185110-mRNA-1:exon:25557;Parent=Msa0185110-mRNA-1 |
| chr1_4 | exon | 75257069 | 75257159 | 75257069 | ID=Msa0185110-mRNA-1:exon:25556;Parent=Msa0185110-mRNA-1 |
| chr1_4 | five_prime_UTR | 75257136 | 75257159 | 75257136 | ID=Msa0185110-mRNA-1:five_prime_utr;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75257069 | 75257135 | 75257069 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75256060 | 75256097 | 75256060 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75255774 | 75255851 | 75255774 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75255575 | 75255658 | 75255575 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75255455 | 75255489 | 75255455 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75255159 | 75255244 | 75255159 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75254891 | 75254956 | 75254891 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | CDS | 75254763 | 75254806 | 75254763 | ID=Msa0185110-mRNA-1:cds;Parent=Msa0185110-mRNA-1 |
| chr1_4 | three_prime_UTR | 75254468 | 75254762 | 75254468 | ID=Msa0185110-mRNA-1:three_prime_utr;Parent=Msa0185110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
