AlfalfaGEDB | Msa0961200

M. sativa cultivar zhongmu-4 / Msa0961200

KEGG: K22374
GO: -
PFAM: PF00248.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961200	XP_039682654.1	87.714	350	14	1	1	350	1	321	0.0	625

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961200	sp\|E7C196\|MER_ERYCB	55.747	348	118	2	9	349	8	326	1.08e-134	389

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0961200	0.815636	8.354237e-52	-8.615850e-47
Msa0001510	Msa0961200	0.808747	2.660402e-50	-8.615850e-47
Msa0002110	Msa0961200	0.811297	7.510709e-51	-8.615850e-47
Msa0002690	Msa0961200	0.815502	8.947852e-52	-8.615850e-47
Msa0002700	Msa0961200	0.804202	2.419552e-49	-8.615850e-47
Msa0003340	Msa0961200	0.831388	1.717217e-55	-8.615850e-47
Msa0003450	Msa0961200	0.820374	7.094123e-53	-8.615850e-47
Msa0004180	Msa0961200	0.823504	1.336716e-53	-8.615850e-47
Msa0005190	Msa0961200	0.801309	9.567511e-49	-8.615850e-47
Msa0007570	Msa0961200	0.825312	5.020495e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961200	MtrunA17_Chr6g0480021	82.571	350	14	1	1	350	1	303	0.0	581
Msa0961200	MtrunA17_Chr6g0480011	62.571	350	101	2	1	349	1	321	4.45e-159	448
Msa0961200	MtrunA17_Chr6g0479981	55.331	347	125	1	1	347	1	317	7.61e-143	407
Msa0961200	MtrunA17_Chr4g0036261	81.421	183	34	0	167	349	1	183	1.00e-109	318
Msa0961200	MtrunA17_Chr1g0173621	47.443	352	145	3	1	349	1	315	1.31e-108	320
Msa0961200	MtrunA17_Chr4g0036301	83.721	172	28	0	179	350	1	172	8.85e-104	302
Msa0961200	MtrunA17_Chr3g0121001	46.398	347	137	8	8	347	9	313	1.55e-98	294
Msa0961200	MtrunA17_Chr4g0036321	79.532	171	35	0	179	349	1	171	1.46e-96	284
Msa0961200	MtrunA17_Chr5g0447941	45.373	335	138	7	16	347	19	311	1.36e-88	268
Msa0961200	MtrunA17_Chr5g0447951	46.645	313	131	5	16	326	19	297	3.31e-88	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961200	AT1G59960.1	47.904	334	144	2	17	349	21	325	3.55e-115	337
Msa0961200	AT1G59950.1	47.305	334	146	2	17	349	15	319	7.82e-106	313
Msa0961200	AT2G37790.1	45.000	340	150	5	11	349	10	313	1.88e-93	281
Msa0961200	AT2G37770.2	45.272	349	153	6	3	349	2	314	5.22e-92	278
Msa0961200	AT3G53880.1	42.647	340	159	5	11	349	10	314	7.63e-86	262
Msa0961200	AT5G62420.1	40.351	342	167	7	11	349	8	315	4.72e-83	255
Msa0961200	AT2G37760.2	42.353	340	156	5	11	349	10	310	5.06e-83	254
Msa0961200	AT2G37760.1	42.353	340	156	5	11	349	10	310	5.06e-83	254
Msa0961200	AT2G37760.5	42.222	315	143	4	11	325	10	285	1.35e-76	238
Msa0961200	AT2G37760.4	41.772	316	145	4	11	326	10	286	3.25e-76	236

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Find 100 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGAAATATTTGAT+TGG	0.391571	6_3:-82264908	Msa0961200:CDS
AAAAGGAACATGGAAAGCCA+TGG	0.591101	6_3:-82265865	Msa0961200:CDS
AAATGATACAAAATTAGAGA+AGG	0.607745	6_3:+82266017	None:intergenic
AAATGGACCTTACAAATCCT+TGG	0.461855	6_3:-82264805	Msa0961200:CDS
AACCAGAATAAATGATGAAG+AGG	0.530460	6_3:+82264509	None:intergenic
AACCTCTTCATCATTTATTC+TGG	0.317571	6_3:-82264511	Msa0961200:three_prime_UTR
AAGATGCCAATAATAGGCCT+AGG	0.525430	6_3:-82266335	Msa0961200:CDS
AAGGAATTCATGTGTGTGCA+TGG	0.620912	6_3:-82265510	Msa0961200:CDS
AATACTTTGTATGCTCCCAA+TGG	0.618795	6_3:+82265484	None:intergenic
AATGTCTGTAACCAATGTCA+AGG	0.577476	6_3:+82266255	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAGGTGATACTAAATTCA+GGG	-	chr6_3:82264665-82264684	Msa0961200:three_prime_UTR	30.0%
TTTGATACAGCTTCTATCTA+TGG	-	chr6_3:82264793-82264812	Msa0961200:CDS	30.0%
AGATTGAAAGAAGATGTTGA+AGG	-	chr6_3:82265099-82265118	Msa0961200:intron	30.0%
ATTTCATCTCTATGCAAGAA+TGG	+	chr6_3:82265404-82265423	None:intergenic	30.0%
TCTACGAACATAAATACTTG+AGG	-	chr6_3:82265767-82265786	Msa0961200:CDS	30.0%
GAAACTAAACCAAGAAGAAT+TGG	-	chr6_3:82266140-82266159	Msa0961200:CDS	30.0%
TTCAGCAATGAATGAGATAA+AGG	+	chr6_3:82266362-82266381	None:intergenic	30.0%
ATAAATGATGAAGAGGTTGA+TGG	+	chr6_3:82266513-82266532	None:intergenic	30.0%
AACCTCTTCATCATTTATTC+TGG	-	chr6_3:82266515-82266534	Msa0961200:five_prime_UTR	30.0%
AACCAGAATAAATGATGAAG+AGG	+	chr6_3:82266520-82266539	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	82264370	82266678	82264370	ID=Msa0961200;Name=Msa0961200
chr6_3	mRNA	82264370	82266678	82264370	ID=Msa0961200-mRNA-1;Parent=Msa0961200;Name=Msa0961200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=276\|1\|1\|1\|1\|1\|3\|409\|350
chr6_3	exon	82264370	82265003	82264370	ID=Msa0961200-mRNA-1:exon:14723;Parent=Msa0961200-mRNA-1
chr6_3	exon	82265408	82265587	82265408	ID=Msa0961200-mRNA-1:exon:14722;Parent=Msa0961200-mRNA-1
chr6_3	exon	82265755	82266678	82265755	ID=Msa0961200-mRNA-1:exon:14721;Parent=Msa0961200-mRNA-1
chr6_3	five_prime_UTR	82266403	82266678	82266403	ID=Msa0961200-mRNA-1:five_prime_utr;Parent=Msa0961200-mRNA-1
chr6_3	CDS	82265755	82266402	82265755	ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3	CDS	82265408	82265587	82265408	ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3	CDS	82264779	82265003	82264779	ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3	three_prime_UTR	82264370	82264778	82264370	ID=Msa0961200-mRNA-1:three_prime_utr;Parent=Msa0961200-mRNA-1

Gene Sequence

>Msa0961200

ATGGAAGCAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATAATAGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCCTTGACATTGGTTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAGAACCTCTAGGCGAAGCTGTGTTAAAAGCTTTAGAGATCGGCCTCATAAAAAATCGCGATGAAATTTTCATTACTTCTAAGTTATGGTGCACTGATGCTCATCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGTTGTATTTATTCCTTCTCTAATTTTGTATCATTTTCTGTTGGAATTGTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGAGAGGATGTGATTCCCTTTGACATAAAAGGAACATGGAAAGCCATGGAAGATTGTTATAGATTAGGCTTAGCCAAATCTATCGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCGTACTCTTGGAAAATGCAACCATTTTACCGGCAGTTAATCAGGTAGAAATGAATCCATCATGGCAGCAAGGAAAACTTAGGGAATTCTGCAGGAACAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTTATGGAGAATCCTATTCTTCAGGAAATTGCTGAGGCTAGAAATAAGAGTGTAGCACAGATAGCACTAAGATGGATACATGAGCAAGGGACAAGTGTAATTGTGAAAAGCTTTAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTAAACCAAGAAGAATTGGACAAAATAAATAAGATTCCACAATGCAGACTTTACAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA

Protein sequence

>Msa0961200

MEANKLHEVILNSGEKMPIIGLGTATTPLPSNEALTSILVDALDIGYRHFDTASIYGTEEPLGEAVLKALEIGLIKNRDEIFITSKLWCTDAHHDLVLKALKTTLKQALFSRTFSFKVVFIPSLILYHFLLELFRNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWKAMEDCYRLGLAKSIGVSNFGIKKLSVLLENATILPAVNQVEMNPSWQQGKLREFCRNKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARNKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP*