AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961200 MtrunA17_Chr6g0480021 82.571 350 14 1 1 350 1 303 0.0 581
Msa0961200 MtrunA17_Chr6g0480011 62.571 350 101 2 1 349 1 321 4.45e-159 448
Msa0961200 MtrunA17_Chr6g0479981 55.331 347 125 1 1 347 1 317 7.61e-143 407
Msa0961200 MtrunA17_Chr4g0036261 81.421 183 34 0 167 349 1 183 1.00e-109 318
Msa0961200 MtrunA17_Chr1g0173621 47.443 352 145 3 1 349 1 315 1.31e-108 320
Msa0961200 MtrunA17_Chr4g0036301 83.721 172 28 0 179 350 1 172 8.85e-104 302
Msa0961200 MtrunA17_Chr3g0121001 46.398 347 137 8 8 347 9 313 1.55e-98 294
Msa0961200 MtrunA17_Chr4g0036321 79.532 171 35 0 179 349 1 171 1.46e-96 284
Msa0961200 MtrunA17_Chr5g0447941 45.373 335 138 7 16 347 19 311 1.36e-88 268
Msa0961200 MtrunA17_Chr5g0447951 46.645 313 131 5 16 326 19 297 3.31e-88 268
Msa0961200 MtrunA17_Chr5g0447961 46.645 313 131 5 16 326 19 297 3.31e-88 268
Msa0961200 MtrunA17_Chr4g0018921 43.804 347 159 7 5 349 2 314 4.88e-88 267
Msa0961200 MtrunA17_Chr8g0368921 42.609 345 156 7 11 349 10 318 2.34e-84 258
Msa0961200 MtrunA17_Chr8g0368931 39.655 348 174 5 3 349 2 314 3.63e-79 244
Msa0961200 MtrunA17_Chr4g0009531 40.762 341 162 7 11 349 10 312 7.47e-77 239
Msa0961200 MtrunA17_Chr7g0239701 41.076 353 168 7 1 349 1 317 1.40e-76 238
Msa0961200 MtrunA17_Chr4g0009581 41.124 338 152 8 11 347 11 302 1.59e-70 222
Msa0961200 MtrunA17_Chr7g0243551 34.494 316 169 5 13 328 19 296 1.21e-59 194
Msa0961200 MtrunA17_Chr4g0036311 75.676 111 27 0 1 111 1 111 1.68e-57 182
Msa0961200 MtrunA17_Chr4g0036291 78.704 108 23 0 1 108 1 108 2.41e-57 181
Msa0961200 MtrunA17_Chr4g0036051 35.077 325 166 8 9 323 3 292 3.97e-53 177
Msa0961200 MtrunA17_Chr6g0479791 96.552 87 1 1 266 350 18 104 5.91e-53 170
Msa0961200 MtrunA17_Chr4g0036251 73.148 108 23 2 1 108 1 102 9.27e-51 164
Msa0961200 MtrunA17_Chr4g0009621 44.118 204 100 4 147 349 38 228 1.53e-50 168
Msa0961200 MtrunA17_Chr6g0479811 63.717 113 41 0 219 331 1 113 8.05e-49 160
Msa0961200 MtrunA17_Chr6g0479801 92.157 51 4 0 131 181 35 85 6.85e-27 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961200 AT1G59960.1 47.904 334 144 2 17 349 21 325 3.55e-115 337
Msa0961200 AT1G59950.1 47.305 334 146 2 17 349 15 319 7.82e-106 313
Msa0961200 AT2G37790.1 45.000 340 150 5 11 349 10 313 1.88e-93 281
Msa0961200 AT2G37770.2 45.272 349 153 6 3 349 2 314 5.22e-92 278
Msa0961200 AT3G53880.1 42.647 340 159 5 11 349 10 314 7.63e-86 262
Msa0961200 AT5G62420.1 40.351 342 167 7 11 349 8 315 4.72e-83 255
Msa0961200 AT2G37760.2 42.353 340 156 5 11 349 10 310 5.06e-83 254
Msa0961200 AT2G37760.1 42.353 340 156 5 11 349 10 310 5.06e-83 254
Msa0961200 AT2G37760.5 42.222 315 143 4 11 325 10 285 1.35e-76 238
Msa0961200 AT2G37760.4 41.772 316 145 4 11 326 10 286 3.25e-76 236
Msa0961200 AT2G37760.3 41.772 316 145 4 11 326 10 286 3.25e-76 236
Msa0961200 AT3G53880.2 41.853 313 147 4 11 323 10 287 3.64e-75 234
Msa0961200 AT5G01670.1 36.963 349 179 8 2 347 9 319 5.75e-74 232
Msa0961200 AT5G01670.2 36.364 352 204 9 2 347 9 346 5.93e-72 228
Msa0961200 AT2G37760.6 42.215 289 134 4 62 349 8 264 1.15e-67 214
Msa0961200 AT2G37760.7 42.215 289 134 4 62 349 8 264 1.15e-67 214
Msa0961200 AT2G21260.1 35.890 326 164 8 8 323 2 292 2.38e-60 196
Msa0961200 AT2G21250.1 34.663 326 168 8 8 323 2 292 2.08e-58 191
Msa0961200 AT2G37770.1 45.798 238 92 5 3 239 2 203 8.33e-57 186
Msa0961200 AT2G21250.2 34.831 267 129 8 8 264 2 233 3.51e-42 147
Msa0961200 AT2G21260.2 35.354 198 118 4 134 321 25 222 2.22e-36 132

Find 100 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6_3:-82265480 Msa0961200:CDS
TGAAGCTCTCACTTCAATTT+TGG 0.164436 6_3:-82266285 Msa0961200:CDS
GTGATTCCCTTTGACATAAA+AGG 0.219739 6_3:-82265882 Msa0961200:CDS
TTTATTTATGCAACACATTA+AGG 0.227807 6_3:-82266500 Msa0961200:five_prime_UTR
CTGATTAACTGCCGGTAAAA+TGG 0.263668 6_3:+82265755 None:intergenic
TTTGATACAGCTTCTATCTA+TGG 0.288397 6_3:-82266233 Msa0961200:CDS
AACCTCTTCATCATTTATTC+TGG 0.317571 6_3:-82264511 Msa0961200:three_prime_UTR
GCAGTTCCTAGGCCTATTAT+TGG 0.318436 6_3:+82266329 None:intergenic
TTGGGGTTCTAATGCTGTTA+TGG 0.341183 6_3:-82265461 Msa0961200:CDS
GAAACTAAACCAAGAAGAAT+TGG 0.353464 6_3:-82264886 Msa0961200:CDS
TTCAGCAATGAATGAGATAA+AGG 0.355045 6_3:+82264667 None:intergenic
TGATCATGAGTTGATATATA+TGG 0.356817 6_3:-82264639 Msa0961200:three_prime_UTR
ATAAAAGCTTTCCTGCGTAT+TGG 0.366385 6_3:-82266568 Msa0961200:five_prime_UTR
TATGGAGAATCCTATTCTTC+AGG 0.366943 6_3:-82265443 Msa0961200:CDS
GTTGCTAACACCGATAGATT+TGG 0.373672 6_3:+82265818 None:intergenic
GGGGAAAAGATGCCAATAAT+AGG 0.375376 6_3:-82266341 Msa0961200:CDS
ATGGAAGATTGTTATAGATT+AGG 0.377351 6_3:-82265846 Msa0961200:CDS
GGGACCATGCATTTATCATC+TGG 0.383353 6_3:-82266615 Msa0961200:five_prime_UTR
CAATTGATTCTTAGATATGA+TGG 0.384524 6_3:+82266427 None:intergenic
ATGGATGTTAACTTTGAGTT+TGG 0.385450 6_3:+82266446 None:intergenic
AAAACCTTGAAATATTTGAT+TGG 0.391571 6_3:-82264908 Msa0961200:CDS
GAAGTGAGAGCTTCATTTGA+TGG 0.392979 6_3:+82266293 None:intergenic
CATGAGGTGATACTAAATTC+AGG 0.395724 6_3:-82266362 Msa0961200:CDS
TCAGCAATTTCCTGAAGAAT+AGG 0.400823 6_3:+82265433 None:intergenic
CAGTGAATGTTTCAAGTGTT+TGG 0.411635 6_3:+82266657 None:intergenic
TCTATCGGTGTTAGCAACTT+TGG 0.413362 6_3:-82265813 Msa0961200:CDS
ATAAATGATGAAGAGGTTGA+TGG 0.430206 6_3:+82264516 None:intergenic
GTTTCCAATCAAATATTTCA+AGG 0.435069 6_3:+82264904 None:intergenic
CATGGCAGCAAGGAAAACTT+AGG 0.450008 6_3:-82265549 Msa0961200:CDS
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6_3:-82264989 Msa0961200:intron
AAATGGACCTTACAAATCCT+TGG 0.461855 6_3:-82264805 Msa0961200:CDS
TAAACAAATTACAATGTTCA+AGG 0.466922 6_3:+82264404 None:intergenic
TCCACAATGCAGACTTTACA+AGG 0.467068 6_3:-82264847 Msa0961200:CDS
GAGGAGTTGTAGCAGTTCCT+AGG 0.470932 6_3:+82266318 None:intergenic
TGGATCTCTACTTGATTCAC+TGG 0.472213 6_3:-82265956 Msa0961200:CDS
TCCTCTACTTGACTAAATCT+AGG 0.475410 6_3:+82264441 None:intergenic
GTTGAAGGCTTTAACTTCAC+AGG 0.475700 6_3:-82265912 Msa0961200:CDS
AGCTCTTCCAAGGATTTGTA+AGG 0.476136 6_3:+82264798 None:intergenic
ATTGTTTAGGAATCTGAGGT+TGG 0.476463 6_3:-82265985 Msa0961200:CDS
AGCTTCGCCTAGAGGTTCTT+CGG 0.477001 6_3:+82266208 None:intergenic
AGAGCTTCATTTGATGGAAG+AGG 0.479484 6_3:+82266299 None:intergenic
ACATCTTCTTTCAATCTCAC+TGG 0.482395 6_3:+82265933 None:intergenic
GAATCTGAGGTTGGAGTATG+TGG 0.495354 6_3:-82265976 Msa0961200:CDS
TGTGTGTGCATGGTCACCAT+TGG 0.497595 6_3:-82265500 Msa0961200:CDS
TGAACTAACACTAGGAAAGA+TGG 0.501509 6_3:-82266399 Msa0961200:exon
TAGAAATAAGAGTGTAGCAC+AGG 0.501879 6_3:-82265407 Msa0961200:intron
GTGTGTGCATGGTCACCATT+GGG 0.511118 6_3:-82265499 Msa0961200:CDS
ATGAGGTGATACTAAATTCA+GGG 0.518353 6_3:-82266361 Msa0961200:CDS
ACTTTGAGTTTGGTTCATTG+AGG 0.520485 6_3:+82266456 None:intergenic
AGAGAACAATGCTTGCTTGA+GGG 0.524372 6_3:+82266070 None:intergenic
AAGATGCCAATAATAGGCCT+AGG 0.525430 6_3:-82266335 Msa0961200:CDS
CAAATCCTTGGAAGAGCTGT+GGG 0.525762 6_3:-82264793 Msa0961200:CDS
AACCAGAATAAATGATGAAG+AGG 0.530460 6_3:+82264509 None:intergenic
TGAAAAGCTTTAACAAAGAG+AGG 0.531243 6_3:-82264938 Msa0961200:CDS
TCTTATACCTGATTAACTGC+CGG 0.533351 6_3:+82265747 None:intergenic
CCTTTGACATAAAAGGAACA+TGG 0.535164 6_3:-82265875 Msa0961200:CDS
GTGTTAAAAGCTTTAGAGAT+CGG 0.536273 6_3:-82266185 Msa0961200:CDS
TCATCATGACCTTGTTCTCA+AGG 0.538439 6_3:-82266105 Msa0961200:CDS
TCAATACAAGATCTTGCTCA+AGG 0.538617 6_3:+82264762 None:intergenic
TCCTAGATTTAGTCAAGTAG+AGG 0.541538 6_3:-82264442 Msa0961200:three_prime_UTR
GGACCATGCATTTATCATCT+GGG 0.545709 6_3:-82266614 Msa0961200:five_prime_UTR
AGATTGAAAGAAGATGTTGA+AGG 0.547100 6_3:-82265927 Msa0961200:CDS
ATGGCAGCAAGGAAAACTTA+GGG 0.550110 6_3:-82265548 Msa0961200:CDS
CTGAATTTAGTATCACCTCA+TGG 0.555888 6_3:+82266363 None:intergenic
TAATCTATAACAATCTTCCA+TGG 0.576595 6_3:+82265848 None:intergenic
AATGTCTGTAACCAATGTCA+AGG 0.577476 6_3:+82266255 None:intergenic
TTGGTTGATGCCCTTGACAT+TGG 0.578089 6_3:-82266266 Msa0961200:CDS
AGGGAATTCTGCAGGAACAA+AGG 0.579229 6_3:-82265529 Msa0961200:CDS
ACCATCCCACAGCTCTTCCA+AGG 0.580081 6_3:+82264788 None:intergenic
GAAAACTTAGGGAATTCTGC+AGG 0.580488 6_3:-82265537 Msa0961200:CDS
GAACAATGCTTGCTTGAGGG+TGG 0.589137 6_3:+82266073 None:intergenic
AAAAGGAACATGGAAAGCCA+TGG 0.591101 6_3:-82265865 Msa0961200:CDS
ACAAATCCTTGGAAGAGCTG+TGG 0.595019 6_3:-82264794 Msa0961200:CDS
GAGTTTGGTTCATTGAGGTG+TGG 0.596710 6_3:+82266461 None:intergenic
TATGGTACCGAAGAACCTCT+AGG 0.597666 6_3:-82266215 Msa0961200:CDS
CAATACAAGATCTTGCTCAA+GGG 0.600515 6_3:+82264763 None:intergenic
TTAGGCTTAGCCAAATCTAT+CGG 0.601040 6_3:-82265828 Msa0961200:CDS
AGGTAGAAATGAATCCATCA+TGG 0.603843 6_3:-82265567 Msa0961200:CDS
GAGAGAACAATGCTTGCTTG+AGG 0.603868 6_3:+82266069 None:intergenic
TTGTGACTTGAACTAACACT+AGG 0.605610 6_3:-82266407 Msa0961200:five_prime_UTR
AAATGATACAAAATTAGAGA+AGG 0.607745 6_3:+82266017 None:intergenic
ATGTCTGTAACCAATGTCAA+GGG 0.608239 6_3:+82266256 None:intergenic
TTATGCAACACATTAAGGTG+TGG 0.613161 6_3:-82266495 Msa0961200:five_prime_UTR
TGGAATTGTTTAGGAATCTG+AGG 0.613504 6_3:-82265989 Msa0961200:CDS
AGGCTTTAACTTCACAGGAG+AGG 0.613527 6_3:-82265907 Msa0961200:CDS
ATGAATCCATCATGGCAGCA+AGG 0.616292 6_3:-82265559 Msa0961200:CDS
AATACTTTGTATGCTCCCAA+TGG 0.618795 6_3:+82265484 None:intergenic
TCTAGCTACTCAAATTCACA+TGG 0.620367 6_3:+82264467 None:intergenic
AAGGAATTCATGTGTGTGCA+TGG 0.620912 6_3:-82265510 Msa0961200:CDS
TGGATGCTATGGAAACAACT+TGG 0.620963 6_3:-82264549 Msa0961200:three_prime_UTR
TTTAACACAGCTTCGCCTAG+AGG 0.626588 6_3:+82266200 None:intergenic
GCCTTGTAAAGTCTGCATTG+TGG 0.628195 6_3:+82264846 None:intergenic
TATTCTTCAGGAAATTGCTG+AGG 0.632039 6_3:-82265431 Msa0961200:CDS
CTAAGATGGATACATGAGCA+AGG 0.646695 6_3:-82264975 Msa0961200:CDS
GGTCCCAGATGATAAATGCA+TGG 0.651514 6_3:+82266611 None:intergenic
TAAAAGACAGTCCAATACGC+AGG 0.654605 6_3:+82266557 None:intergenic
TGAGGTGATACTAAATTCAG+GGG 0.660799 6_3:-82266360 Msa0961200:CDS
TAAGATGGATACATGAGCAA+GGG 0.664827 6_3:-82264974 Msa0961200:CDS
TCCTTGGAAGAGCTGTGGGA+TGG 0.668107 6_3:-82264789 Msa0961200:CDS
GGAAGCAAATAAACTCCATG+AGG 0.684740 6_3:-82266378 Msa0961200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGGTTTTATTGACTATT+TGG + chr6_3:82264439-82264458 None:intergenic 20.0%
!! TTTATTTATGCAACACATTA+AGG - chr6_3:82264526-82264545 Msa0961200:three_prime_UTR 20.0%
!!! TTTTCATTACTTCTAAGTTA+TGG - chr6_3:82264887-82264906 Msa0961200:CDS 20.0%
!! AAATGATACAAAATTAGAGA+AGG + chr6_3:82265012-82265031 None:intergenic 20.0%
!!! AATTTTGTATCATTTTCTGT+TGG - chr6_3:82265017-82265036 Msa0961200:intron 20.0%
!! TAATGACATGTAAAAATACT+CGG + chr6_3:82265323-82265342 None:intergenic 20.0%
!! AGTATTAACGTAATATTGAT+TGG + chr6_3:82265347-82265366 None:intergenic 20.0%
!!! TATCTAACATTTTAAGCTTT+CGG + chr6_3:82265715-82265734 None:intergenic 20.0%
!! AGCTTAAAATGTTAGATAAA+TGG - chr6_3:82265717-82265736 Msa0961200:intron 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - chr6_3:82265945-82265964 Msa0961200:CDS 20.0%
!! AAAACCTTGAAATATTTGAT+TGG - chr6_3:82266118-82266137 Msa0961200:CDS 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - chr6_3:82266204-82266223 Msa0961200:CDS 20.0%
!! TAAACAAATTACAATGTTCA+AGG + chr6_3:82266625-82266644 None:intergenic 20.0%
!!! TTATGGTTTTATTGACTATT+TGG + chr6_3:82264439-82264458 None:intergenic 20.0%
!! TTTATTTATGCAACACATTA+AGG - chr6_3:82264526-82264545 Msa0961200:three_prime_UTR 20.0%
!!! TTTTCATTACTTCTAAGTTA+TGG - chr6_3:82264887-82264906 Msa0961200:CDS 20.0%
!! AAATGATACAAAATTAGAGA+AGG + chr6_3:82265012-82265031 None:intergenic 20.0%
!!! AATTTTGTATCATTTTCTGT+TGG - chr6_3:82265017-82265036 Msa0961200:intron 20.0%
!! TAATGACATGTAAAAATACT+CGG + chr6_3:82265323-82265342 None:intergenic 20.0%
!! AGTATTAACGTAATATTGAT+TGG + chr6_3:82265347-82265366 None:intergenic 20.0%
!!! TATCTAACATTTTAAGCTTT+CGG + chr6_3:82265715-82265734 None:intergenic 20.0%
!! AGCTTAAAATGTTAGATAAA+TGG - chr6_3:82265717-82265736 Msa0961200:intron 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - chr6_3:82265945-82265964 Msa0961200:CDS 20.0%
!! AAAACCTTGAAATATTTGAT+TGG - chr6_3:82266118-82266137 Msa0961200:CDS 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - chr6_3:82266204-82266223 Msa0961200:CDS 20.0%
!! TAAACAAATTACAATGTTCA+AGG + chr6_3:82266625-82266644 None:intergenic 20.0%
!! TGCCTTACATTTTTCATATT+AGG - chr6_3:82264390-82264409 Msa0961200:three_prime_UTR 25.0%
!! GCCTTACATTTTTCATATTA+GGG - chr6_3:82264391-82264410 Msa0961200:three_prime_UTR 25.0%
! TCCCTAATATGAAAAATGTA+AGG + chr6_3:82264395-82264414 None:intergenic 25.0%
!! CAATTGATTCTTAGATATGA+TGG + chr6_3:82264602-82264621 None:intergenic 25.0%
!! ATTTTCTGTTGGAATTGTTT+AGG - chr6_3:82265028-82265047 Msa0961200:intron 25.0%
! TAATCTATAACAATCTTCCA+TGG + chr6_3:82265181-82265200 None:intergenic 25.0%
! ATGGAAGATTGTTATAGATT+AGG - chr6_3:82265180-82265199 Msa0961200:intron 25.0%
! GTTTCCAATCAAATATTTCA+AGG + chr6_3:82266125-82266144 None:intergenic 25.0%
!!! TTATTTTGTCCAATTCTTCT+TGG + chr6_3:82266152-82266171 None:intergenic 25.0%
!!! ATTAAGAATGTTTTTGTGCA+AGG + chr6_3:82266337-82266356 None:intergenic 25.0%
!!! TGATCATGAGTTGATATATA+TGG - chr6_3:82266387-82266406 Msa0961200:exon 25.0%
!! TGCCTTACATTTTTCATATT+AGG - chr6_3:82264390-82264409 Msa0961200:three_prime_UTR 25.0%
!! GCCTTACATTTTTCATATTA+GGG - chr6_3:82264391-82264410 Msa0961200:three_prime_UTR 25.0%
! TCCCTAATATGAAAAATGTA+AGG + chr6_3:82264395-82264414 None:intergenic 25.0%
!! CAATTGATTCTTAGATATGA+TGG + chr6_3:82264602-82264621 None:intergenic 25.0%
!! ATTTTCTGTTGGAATTGTTT+AGG - chr6_3:82265028-82265047 Msa0961200:intron 25.0%
! TAATCTATAACAATCTTCCA+TGG + chr6_3:82265181-82265200 None:intergenic 25.0%
! ATGGAAGATTGTTATAGATT+AGG - chr6_3:82265180-82265199 Msa0961200:intron 25.0%
! GTTTCCAATCAAATATTTCA+AGG + chr6_3:82266125-82266144 None:intergenic 25.0%
!!! TTATTTTGTCCAATTCTTCT+TGG + chr6_3:82266152-82266171 None:intergenic 25.0%
!!! ATTAAGAATGTTTTTGTGCA+AGG + chr6_3:82266337-82266356 None:intergenic 25.0%
!!! TGATCATGAGTTGATATATA+TGG - chr6_3:82266387-82266406 Msa0961200:exon 25.0%
! ATGGATGTTAACTTTGAGTT+TGG + chr6_3:82264583-82264602 None:intergenic 30.0%
ATGAGGTGATACTAAATTCA+GGG - chr6_3:82264665-82264684 Msa0961200:three_prime_UTR 30.0%
TTTGATACAGCTTCTATCTA+TGG - chr6_3:82264793-82264812 Msa0961200:CDS 30.0%
!! GTGTTAAAAGCTTTAGAGAT+CGG - chr6_3:82264841-82264860 Msa0961200:CDS 30.0%
!!! TTTCATCGCGATTTTTTATG+AGG + chr6_3:82264867-82264886 None:intergenic 30.0%
!! CTCTCGAACTTTTTCTTTTA+AGG - chr6_3:82264975-82264994 Msa0961200:CDS 30.0%
AGATTGAAAGAAGATGTTGA+AGG - chr6_3:82265099-82265118 Msa0961200:intron 30.0%
! CATGTTCCTTTTATGTCAAA+GGG + chr6_3:82265153-82265172 None:intergenic 30.0%
ATTTCATCTCTATGCAAGAA+TGG + chr6_3:82265404-82265423 None:intergenic 30.0%
! CATGTCGATTATTTCGATTT+AGG - chr6_3:82265439-82265458 Msa0961200:CDS 30.0%
TCTACGAACATAAATACTTG+AGG - chr6_3:82265767-82265786 Msa0961200:CDS 30.0%
! TGAAAAGCTTTAACAAAGAG+AGG - chr6_3:82266088-82266107 Msa0961200:CDS 30.0%
GAAACTAAACCAAGAAGAAT+TGG - chr6_3:82266140-82266159 Msa0961200:CDS 30.0%
TTCAGCAATGAATGAGATAA+AGG + chr6_3:82266362-82266381 None:intergenic 30.0%
ATAAATGATGAAGAGGTTGA+TGG + chr6_3:82266513-82266532 None:intergenic 30.0%
AACCTCTTCATCATTTATTC+TGG - chr6_3:82266515-82266534 Msa0961200:five_prime_UTR 30.0%
AACCAGAATAAATGATGAAG+AGG + chr6_3:82266520-82266539 None:intergenic 30.0%
! ATGGATGTTAACTTTGAGTT+TGG + chr6_3:82264583-82264602 None:intergenic 30.0%
ATGAGGTGATACTAAATTCA+GGG - chr6_3:82264665-82264684 Msa0961200:three_prime_UTR 30.0%
TTTGATACAGCTTCTATCTA+TGG - chr6_3:82264793-82264812 Msa0961200:CDS 30.0%
!! GTGTTAAAAGCTTTAGAGAT+CGG - chr6_3:82264841-82264860 Msa0961200:CDS 30.0%
!!! TTTCATCGCGATTTTTTATG+AGG + chr6_3:82264867-82264886 None:intergenic 30.0%
!! CTCTCGAACTTTTTCTTTTA+AGG - chr6_3:82264975-82264994 Msa0961200:CDS 30.0%
AGATTGAAAGAAGATGTTGA+AGG - chr6_3:82265099-82265118 Msa0961200:intron 30.0%
! CATGTTCCTTTTATGTCAAA+GGG + chr6_3:82265153-82265172 None:intergenic 30.0%
ATTTCATCTCTATGCAAGAA+TGG + chr6_3:82265404-82265423 None:intergenic 30.0%
! CATGTCGATTATTTCGATTT+AGG - chr6_3:82265439-82265458 Msa0961200:CDS 30.0%
TCTACGAACATAAATACTTG+AGG - chr6_3:82265767-82265786 Msa0961200:CDS 30.0%
! TGAAAAGCTTTAACAAAGAG+AGG - chr6_3:82266088-82266107 Msa0961200:CDS 30.0%
GAAACTAAACCAAGAAGAAT+TGG - chr6_3:82266140-82266159 Msa0961200:CDS 30.0%
TTCAGCAATGAATGAGATAA+AGG + chr6_3:82266362-82266381 None:intergenic 30.0%
ATAAATGATGAAGAGGTTGA+TGG + chr6_3:82266513-82266532 None:intergenic 30.0%
AACCTCTTCATCATTTATTC+TGG - chr6_3:82266515-82266534 Msa0961200:five_prime_UTR 30.0%
AACCAGAATAAATGATGAAG+AGG + chr6_3:82266520-82266539 None:intergenic 30.0%
! ACGCAGGAAAGCTTTTATTA+TGG + chr6_3:82264456-82264475 None:intergenic 35.0%
ATAAAAGCTTTCCTGCGTAT+TGG - chr6_3:82264458-82264477 Msa0961200:three_prime_UTR 35.0%
! ACTGTCTTTTATGCAACCTA+AGG - chr6_3:82264481-82264500 Msa0961200:three_prime_UTR 35.0%
TTATGCAACACATTAAGGTG+TGG - chr6_3:82264531-82264550 Msa0961200:three_prime_UTR 35.0%
! ACTTTGAGTTTGGTTCATTG+AGG + chr6_3:82264573-82264592 None:intergenic 35.0%
TTGTGACTTGAACTAACACT+AGG - chr6_3:82264619-82264638 Msa0961200:three_prime_UTR 35.0%
TGAACTAACACTAGGAAAGA+TGG - chr6_3:82264627-82264646 Msa0961200:three_prime_UTR 35.0%
CTGAATTTAGTATCACCTCA+TGG + chr6_3:82264666-82264685 None:intergenic 35.0%
CATGAGGTGATACTAAATTC+AGG - chr6_3:82264664-82264683 Msa0961200:three_prime_UTR 35.0%
TGAGGTGATACTAAATTCAG+GGG - chr6_3:82264666-82264685 Msa0961200:three_prime_UTR 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - chr6_3:82264741-82264760 Msa0961200:three_prime_UTR 35.0%
ATGTCTGTAACCAATGTCAA+GGG + chr6_3:82264773-82264792 None:intergenic 35.0%
AATGTCTGTAACCAATGTCA+AGG + chr6_3:82264774-82264793 None:intergenic 35.0%
TGGAATTGTTTAGGAATCTG+AGG - chr6_3:82265037-82265056 Msa0961200:intron 35.0%
! ATTGTTTAGGAATCTGAGGT+TGG - chr6_3:82265041-82265060 Msa0961200:intron 35.0%
ACATCTTCTTTCAATCTCAC+TGG + chr6_3:82265096-82265115 None:intergenic 35.0%
GTGATTCCCTTTGACATAAA+AGG - chr6_3:82265144-82265163 Msa0961200:intron 35.0%
! CCATGTTCCTTTTATGTCAA+AGG + chr6_3:82265154-82265173 None:intergenic 35.0%
CCTTTGACATAAAAGGAACA+TGG - chr6_3:82265151-82265170 Msa0961200:intron 35.0%
TTAGGCTTAGCCAAATCTAT+CGG - chr6_3:82265198-82265217 Msa0961200:intron 35.0%
! GGAAAATGCAACCATTTTAC+CGG - chr6_3:82265260-82265279 Msa0961200:intron 35.0%
TCTTATACCTGATTAACTGC+CGG + chr6_3:82265282-82265301 None:intergenic 35.0%
AGAGATGAAATTCACTCCAT+TGG - chr6_3:82265413-82265432 Msa0961200:CDS 35.0%
AATAATCGACATGCAACCAA+TGG + chr6_3:82265432-82265451 None:intergenic 35.0%
AGGTAGAAATGAATCCATCA+TGG - chr6_3:82265459-82265478 Msa0961200:CDS 35.0%
AATACTTTGTATGCTCCCAA+TGG + chr6_3:82265545-82265564 None:intergenic 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - chr6_3:82265546-82265565 Msa0961200:CDS 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - chr6_3:82265547-82265566 Msa0961200:CDS 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - chr6_3:82265548-82265567 Msa0961200:CDS 35.0%
TATGGAGAATCCTATTCTTC+AGG - chr6_3:82265583-82265602 Msa0961200:intron 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + chr6_3:82265596-82265615 None:intergenic 35.0%
TATTCTTCAGGAAATTGCTG+AGG - chr6_3:82265595-82265614 Msa0961200:intron 35.0%
! TAGAAATAAGAGTGTAGCAC+AGG - chr6_3:82265619-82265638 Msa0961200:intron 35.0%
CTGCACTAAGAAATCTAAAG+AGG + chr6_3:82265743-82265762 None:intergenic 35.0%
TTATGACTTATGAGAGCTCA+TGG - chr6_3:82265794-82265813 Msa0961200:CDS 35.0%
ATTGGAAACAGCTAATGACA+TGG - chr6_3:82265817-82265836 Msa0961200:CDS 35.0%
TAAGATGGATACATGAGCAA+GGG - chr6_3:82266052-82266071 Msa0961200:CDS 35.0%
AAATGGACCTTACAAATCCT+TGG - chr6_3:82266221-82266240 Msa0961200:CDS 35.0%
CAATACAAGATCTTGCTCAA+GGG + chr6_3:82266266-82266285 None:intergenic 35.0%
TCAATACAAGATCTTGCTCA+AGG + chr6_3:82266267-82266286 None:intergenic 35.0%
! GTTTTTGTGCAAGGTAAAGA+AGG + chr6_3:82266328-82266347 None:intergenic 35.0%
!! TCAGAAACTTGTTTTTCACG+TGG - chr6_3:82266454-82266473 Msa0961200:five_prime_UTR 35.0%
TCTAGCTACTCAAATTCACA+TGG + chr6_3:82266562-82266581 None:intergenic 35.0%
TCCTAGATTTAGTCAAGTAG+AGG - chr6_3:82266584-82266603 Msa0961200:five_prime_UTR 35.0%
TCCTCTACTTGACTAAATCT+AGG + chr6_3:82266588-82266607 None:intergenic 35.0%
! CAGTGAATGTTTCAAGTGTT+TGG + chr6_3:82264372-82264391 None:intergenic 35.0%
! ACGCAGGAAAGCTTTTATTA+TGG + chr6_3:82264456-82264475 None:intergenic 35.0%
ATAAAAGCTTTCCTGCGTAT+TGG - chr6_3:82264458-82264477 Msa0961200:three_prime_UTR 35.0%
! ACTGTCTTTTATGCAACCTA+AGG - chr6_3:82264481-82264500 Msa0961200:three_prime_UTR 35.0%
TTATGCAACACATTAAGGTG+TGG - chr6_3:82264531-82264550 Msa0961200:three_prime_UTR 35.0%
! ACTTTGAGTTTGGTTCATTG+AGG + chr6_3:82264573-82264592 None:intergenic 35.0%
TTGTGACTTGAACTAACACT+AGG - chr6_3:82264619-82264638 Msa0961200:three_prime_UTR 35.0%
TGAACTAACACTAGGAAAGA+TGG - chr6_3:82264627-82264646 Msa0961200:three_prime_UTR 35.0%
CTGAATTTAGTATCACCTCA+TGG + chr6_3:82264666-82264685 None:intergenic 35.0%
CATGAGGTGATACTAAATTC+AGG - chr6_3:82264664-82264683 Msa0961200:three_prime_UTR 35.0%
TGAGGTGATACTAAATTCAG+GGG - chr6_3:82264666-82264685 Msa0961200:three_prime_UTR 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - chr6_3:82264741-82264760 Msa0961200:three_prime_UTR 35.0%
ATGTCTGTAACCAATGTCAA+GGG + chr6_3:82264773-82264792 None:intergenic 35.0%
AATGTCTGTAACCAATGTCA+AGG + chr6_3:82264774-82264793 None:intergenic 35.0%
TGGAATTGTTTAGGAATCTG+AGG - chr6_3:82265037-82265056 Msa0961200:intron 35.0%
! ATTGTTTAGGAATCTGAGGT+TGG - chr6_3:82265041-82265060 Msa0961200:intron 35.0%
ACATCTTCTTTCAATCTCAC+TGG + chr6_3:82265096-82265115 None:intergenic 35.0%
GTGATTCCCTTTGACATAAA+AGG - chr6_3:82265144-82265163 Msa0961200:intron 35.0%
! CCATGTTCCTTTTATGTCAA+AGG + chr6_3:82265154-82265173 None:intergenic 35.0%
CCTTTGACATAAAAGGAACA+TGG - chr6_3:82265151-82265170 Msa0961200:intron 35.0%
TTAGGCTTAGCCAAATCTAT+CGG - chr6_3:82265198-82265217 Msa0961200:intron 35.0%
! GGAAAATGCAACCATTTTAC+CGG - chr6_3:82265260-82265279 Msa0961200:intron 35.0%
TCTTATACCTGATTAACTGC+CGG + chr6_3:82265282-82265301 None:intergenic 35.0%
AGAGATGAAATTCACTCCAT+TGG - chr6_3:82265413-82265432 Msa0961200:CDS 35.0%
AATAATCGACATGCAACCAA+TGG + chr6_3:82265432-82265451 None:intergenic 35.0%
AGGTAGAAATGAATCCATCA+TGG - chr6_3:82265459-82265478 Msa0961200:CDS 35.0%
AATACTTTGTATGCTCCCAA+TGG + chr6_3:82265545-82265564 None:intergenic 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - chr6_3:82265546-82265565 Msa0961200:CDS 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - chr6_3:82265547-82265566 Msa0961200:CDS 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - chr6_3:82265548-82265567 Msa0961200:CDS 35.0%
TATGGAGAATCCTATTCTTC+AGG - chr6_3:82265583-82265602 Msa0961200:intron 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + chr6_3:82265596-82265615 None:intergenic 35.0%
TATTCTTCAGGAAATTGCTG+AGG - chr6_3:82265595-82265614 Msa0961200:intron 35.0%
! TAGAAATAAGAGTGTAGCAC+AGG - chr6_3:82265619-82265638 Msa0961200:intron 35.0%
CTGCACTAAGAAATCTAAAG+AGG + chr6_3:82265743-82265762 None:intergenic 35.0%
TTATGACTTATGAGAGCTCA+TGG - chr6_3:82265794-82265813 Msa0961200:CDS 35.0%
ATTGGAAACAGCTAATGACA+TGG - chr6_3:82265817-82265836 Msa0961200:CDS 35.0%
TAAGATGGATACATGAGCAA+GGG - chr6_3:82266052-82266071 Msa0961200:CDS 35.0%
AAATGGACCTTACAAATCCT+TGG - chr6_3:82266221-82266240 Msa0961200:CDS 35.0%
CAATACAAGATCTTGCTCAA+GGG + chr6_3:82266266-82266285 None:intergenic 35.0%
TCAATACAAGATCTTGCTCA+AGG + chr6_3:82266267-82266286 None:intergenic 35.0%
! GTTTTTGTGCAAGGTAAAGA+AGG + chr6_3:82266328-82266347 None:intergenic 35.0%
!! TCAGAAACTTGTTTTTCACG+TGG - chr6_3:82266454-82266473 Msa0961200:five_prime_UTR 35.0%
TCTAGCTACTCAAATTCACA+TGG + chr6_3:82266562-82266581 None:intergenic 35.0%
TCCTAGATTTAGTCAAGTAG+AGG - chr6_3:82266584-82266603 Msa0961200:five_prime_UTR 35.0%
TCCTCTACTTGACTAAATCT+AGG + chr6_3:82266588-82266607 None:intergenic 35.0%
GGACCATGCATTTATCATCT+GGG - chr6_3:82264412-82264431 Msa0961200:three_prime_UTR 40.0%
TAAAAGACAGTCCAATACGC+AGG + chr6_3:82264472-82264491 None:intergenic 40.0%
! GAAGACACATTTTACGCCTT+AGG + chr6_3:82264500-82264519 None:intergenic 40.0%
GGAAGCAAATAAACTCCATG+AGG - chr6_3:82264648-82264667 Msa0961200:three_prime_UTR 40.0%
GGGGAAAAGATGCCAATAAT+AGG - chr6_3:82264685-82264704 Msa0961200:three_prime_UTR 40.0%
AAGATGCCAATAATAGGCCT+AGG - chr6_3:82264691-82264710 Msa0961200:three_prime_UTR 40.0%
AGAGCTTCATTTGATGGAAG+AGG + chr6_3:82264730-82264749 None:intergenic 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + chr6_3:82264736-82264755 None:intergenic 40.0%
TCATCATGACCTTGTTCTCA+AGG - chr6_3:82264921-82264940 Msa0961200:CDS 40.0%
!! TTTTGAGAGCCTTGAGAACA+AGG + chr6_3:82264933-82264952 None:intergenic 40.0%
AGAGAACAATGCTTGCTTGA+GGG + chr6_3:82264959-82264978 None:intergenic 40.0%
TGGATCTCTACTTGATTCAC+TGG - chr6_3:82265070-82265089 Msa0961200:intron 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - chr6_3:82265114-82265133 Msa0961200:intron 40.0%
AAAAGGAACATGGAAAGCCA+TGG - chr6_3:82265161-82265180 Msa0961200:intron 40.0%
GTTGCTAACACCGATAGATT+TGG + chr6_3:82265211-82265230 None:intergenic 40.0%
!! TCTATCGGTGTTAGCAACTT+TGG - chr6_3:82265213-82265232 Msa0961200:intron 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - chr6_3:82265239-82265258 Msa0961200:intron 40.0%
! GGTTGCATTTTCCAAGAGTA+CGG + chr6_3:82265253-82265272 None:intergenic 40.0%
CTGATTAACTGCCGGTAAAA+TGG + chr6_3:82265274-82265293 None:intergenic 40.0%
! CATTTTACCGGCAGTTAATC+AGG - chr6_3:82265272-82265291 Msa0961200:intron 40.0%
ATGGCAGCAAGGAAAACTTA+GGG - chr6_3:82265478-82265497 Msa0961200:CDS 40.0%
GAAAACTTAGGGAATTCTGC+AGG - chr6_3:82265489-82265508 Msa0961200:CDS 40.0%
AAGGAATTCATGTGTGTGCA+TGG - chr6_3:82265516-82265535 Msa0961200:CDS 40.0%
! TTGGGGTTCTAATGCTGTTA+TGG - chr6_3:82265565-82265584 Msa0961200:CDS 40.0%
ACTTATGAGAGCTCATGGAT+TGG - chr6_3:82265799-82265818 Msa0961200:CDS 40.0%
AAACGACAGTGAAGAGCTTA+CGG + chr6_3:82265867-82265886 None:intergenic 40.0%
TCTTGCAGATAGCACTAAGA+TGG - chr6_3:82266037-82266056 Msa0961200:CDS 40.0%
CTAAGATGGATACATGAGCA+AGG - chr6_3:82266051-82266070 Msa0961200:CDS 40.0%
TCCACAATGCAGACTTTACA+AGG - chr6_3:82266179-82266198 Msa0961200:CDS 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + chr6_3:82266231-82266250 None:intergenic 40.0%
!! GAAACTTGTTTTTCACGTGG+TGG - chr6_3:82266457-82266476 Msa0961200:five_prime_UTR 40.0%
TGGATGCTATGGAAACAACT+TGG - chr6_3:82266477-82266496 Msa0961200:five_prime_UTR 40.0%
GGACCATGCATTTATCATCT+GGG - chr6_3:82264412-82264431 Msa0961200:three_prime_UTR 40.0%
TAAAAGACAGTCCAATACGC+AGG + chr6_3:82264472-82264491 None:intergenic 40.0%
! GAAGACACATTTTACGCCTT+AGG + chr6_3:82264500-82264519 None:intergenic 40.0%
GGAAGCAAATAAACTCCATG+AGG - chr6_3:82264648-82264667 Msa0961200:three_prime_UTR 40.0%
GGGGAAAAGATGCCAATAAT+AGG - chr6_3:82264685-82264704 Msa0961200:three_prime_UTR 40.0%
AAGATGCCAATAATAGGCCT+AGG - chr6_3:82264691-82264710 Msa0961200:three_prime_UTR 40.0%
AGAGCTTCATTTGATGGAAG+AGG + chr6_3:82264730-82264749 None:intergenic 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + chr6_3:82264736-82264755 None:intergenic 40.0%
TCATCATGACCTTGTTCTCA+AGG - chr6_3:82264921-82264940 Msa0961200:CDS 40.0%
!! TTTTGAGAGCCTTGAGAACA+AGG + chr6_3:82264933-82264952 None:intergenic 40.0%
AGAGAACAATGCTTGCTTGA+GGG + chr6_3:82264959-82264978 None:intergenic 40.0%
TGGATCTCTACTTGATTCAC+TGG - chr6_3:82265070-82265089 Msa0961200:intron 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - chr6_3:82265114-82265133 Msa0961200:intron 40.0%
AAAAGGAACATGGAAAGCCA+TGG - chr6_3:82265161-82265180 Msa0961200:intron 40.0%
GTTGCTAACACCGATAGATT+TGG + chr6_3:82265211-82265230 None:intergenic 40.0%
!! TCTATCGGTGTTAGCAACTT+TGG - chr6_3:82265213-82265232 Msa0961200:intron 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - chr6_3:82265239-82265258 Msa0961200:intron 40.0%
! GGTTGCATTTTCCAAGAGTA+CGG + chr6_3:82265253-82265272 None:intergenic 40.0%
CTGATTAACTGCCGGTAAAA+TGG + chr6_3:82265274-82265293 None:intergenic 40.0%
! CATTTTACCGGCAGTTAATC+AGG - chr6_3:82265272-82265291 Msa0961200:intron 40.0%
ATGGCAGCAAGGAAAACTTA+GGG - chr6_3:82265478-82265497 Msa0961200:CDS 40.0%
GAAAACTTAGGGAATTCTGC+AGG - chr6_3:82265489-82265508 Msa0961200:CDS 40.0%
AAGGAATTCATGTGTGTGCA+TGG - chr6_3:82265516-82265535 Msa0961200:CDS 40.0%
! TTGGGGTTCTAATGCTGTTA+TGG - chr6_3:82265565-82265584 Msa0961200:CDS 40.0%
ACTTATGAGAGCTCATGGAT+TGG - chr6_3:82265799-82265818 Msa0961200:CDS 40.0%
AAACGACAGTGAAGAGCTTA+CGG + chr6_3:82265867-82265886 None:intergenic 40.0%
TCTTGCAGATAGCACTAAGA+TGG - chr6_3:82266037-82266056 Msa0961200:CDS 40.0%
CTAAGATGGATACATGAGCA+AGG - chr6_3:82266051-82266070 Msa0961200:CDS 40.0%
TCCACAATGCAGACTTTACA+AGG - chr6_3:82266179-82266198 Msa0961200:CDS 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + chr6_3:82266231-82266250 None:intergenic 40.0%
!! GAAACTTGTTTTTCACGTGG+TGG - chr6_3:82266457-82266476 Msa0961200:five_prime_UTR 40.0%
TGGATGCTATGGAAACAACT+TGG - chr6_3:82266477-82266496 Msa0961200:five_prime_UTR 40.0%
GGGACCATGCATTTATCATC+TGG - chr6_3:82264411-82264430 Msa0961200:three_prime_UTR 45.0%
GGTCCCAGATGATAAATGCA+TGG + chr6_3:82264418-82264437 None:intergenic 45.0%
! GAGTTTGGTTCATTGAGGTG+TGG + chr6_3:82264568-82264587 None:intergenic 45.0%
GCAGTTCCTAGGCCTATTAT+TGG + chr6_3:82264700-82264719 None:intergenic 45.0%
! TTGGTTGATGCCCTTGACAT+TGG - chr6_3:82264760-82264779 Msa0961200:exon 45.0%
! TATGGTACCGAAGAACCTCT+AGG - chr6_3:82264811-82264830 Msa0961200:CDS 45.0%
TTTAACACAGCTTCGCCTAG+AGG + chr6_3:82264829-82264848 None:intergenic 45.0%
GAGAGAACAATGCTTGCTTG+AGG + chr6_3:82264960-82264979 None:intergenic 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - chr6_3:82265050-82265069 Msa0961200:intron 45.0%
! AGGCTTTAACTTCACAGGAG+AGG - chr6_3:82265119-82265138 Msa0961200:intron 45.0%
ATGAATCCATCATGGCAGCA+AGG - chr6_3:82265467-82265486 Msa0961200:CDS 45.0%
! AGTTTTCCTTGCTGCCATGA+TGG + chr6_3:82265476-82265495 None:intergenic 45.0%
CATGGCAGCAAGGAAAACTT+AGG - chr6_3:82265477-82265496 Msa0961200:CDS 45.0%
AGGGAATTCTGCAGGAACAA+AGG - chr6_3:82265497-82265516 Msa0961200:CDS 45.0%
! GCTTTCGGAACAGTTTGTTC+TGG + chr6_3:82265700-82265719 None:intergenic 45.0%
GCCTTGTAAAGTCTGCATTG+TGG + chr6_3:82266183-82266202 None:intergenic 45.0%
ACAAATCCTTGGAAGAGCTG+TGG - chr6_3:82266232-82266251 Msa0961200:CDS 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - chr6_3:82266233-82266252 Msa0961200:CDS 45.0%
!!! TTTTCACGTGGTGGATGCTA+TGG - chr6_3:82266466-82266485 Msa0961200:five_prime_UTR 45.0%
GGGACCATGCATTTATCATC+TGG - chr6_3:82264411-82264430 Msa0961200:three_prime_UTR 45.0%
GGTCCCAGATGATAAATGCA+TGG + chr6_3:82264418-82264437 None:intergenic 45.0%
! GAGTTTGGTTCATTGAGGTG+TGG + chr6_3:82264568-82264587 None:intergenic 45.0%
GCAGTTCCTAGGCCTATTAT+TGG + chr6_3:82264700-82264719 None:intergenic 45.0%
! TTGGTTGATGCCCTTGACAT+TGG - chr6_3:82264760-82264779 Msa0961200:exon 45.0%
! TATGGTACCGAAGAACCTCT+AGG - chr6_3:82264811-82264830 Msa0961200:CDS 45.0%
TTTAACACAGCTTCGCCTAG+AGG + chr6_3:82264829-82264848 None:intergenic 45.0%
GAGAGAACAATGCTTGCTTG+AGG + chr6_3:82264960-82264979 None:intergenic 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - chr6_3:82265050-82265069 Msa0961200:intron 45.0%
! AGGCTTTAACTTCACAGGAG+AGG - chr6_3:82265119-82265138 Msa0961200:intron 45.0%
ATGAATCCATCATGGCAGCA+AGG - chr6_3:82265467-82265486 Msa0961200:CDS 45.0%
! AGTTTTCCTTGCTGCCATGA+TGG + chr6_3:82265476-82265495 None:intergenic 45.0%
CATGGCAGCAAGGAAAACTT+AGG - chr6_3:82265477-82265496 Msa0961200:CDS 45.0%
AGGGAATTCTGCAGGAACAA+AGG - chr6_3:82265497-82265516 Msa0961200:CDS 45.0%
! GCTTTCGGAACAGTTTGTTC+TGG + chr6_3:82265700-82265719 None:intergenic 45.0%
GCCTTGTAAAGTCTGCATTG+TGG + chr6_3:82266183-82266202 None:intergenic 45.0%
ACAAATCCTTGGAAGAGCTG+TGG - chr6_3:82266232-82266251 Msa0961200:CDS 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - chr6_3:82266233-82266252 Msa0961200:CDS 45.0%
!!! TTTTCACGTGGTGGATGCTA+TGG - chr6_3:82266466-82266485 Msa0961200:five_prime_UTR 45.0%
GAGGAGTTGTAGCAGTTCCT+AGG + chr6_3:82264711-82264730 None:intergenic 50.0%
AGCTTCGCCTAGAGGTTCTT+CGG + chr6_3:82264821-82264840 None:intergenic 50.0%
GAACAATGCTTGCTTGAGGG+TGG + chr6_3:82264956-82264975 None:intergenic 50.0%
TGTGTGTGCATGGTCACCAT+TGG - chr6_3:82265526-82265545 Msa0961200:CDS 50.0%
GTGTGTGCATGGTCACCATT+GGG - chr6_3:82265527-82265546 Msa0961200:CDS 50.0%
GAGGAGTTGTAGCAGTTCCT+AGG + chr6_3:82264711-82264730 None:intergenic 50.0%
AGCTTCGCCTAGAGGTTCTT+CGG + chr6_3:82264821-82264840 None:intergenic 50.0%
GAACAATGCTTGCTTGAGGG+TGG + chr6_3:82264956-82264975 None:intergenic 50.0%
TGTGTGTGCATGGTCACCAT+TGG - chr6_3:82265526-82265545 Msa0961200:CDS 50.0%
GTGTGTGCATGGTCACCATT+GGG - chr6_3:82265527-82265546 Msa0961200:CDS 50.0%
TCCTTGGAAGAGCTGTGGGA+TGG - chr6_3:82266237-82266256 Msa0961200:CDS 55.0%
ACCATCCCACAGCTCTTCCA+AGG + chr6_3:82266241-82266260 None:intergenic 55.0%
TCCTTGGAAGAGCTGTGGGA+TGG - chr6_3:82266237-82266256 Msa0961200:CDS 55.0%
ACCATCCCACAGCTCTTCCA+AGG + chr6_3:82266241-82266260 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 82264370 82266678 82264370 ID=Msa0961200;Name=Msa0961200
chr6_3 mRNA 82264370 82266678 82264370 ID=Msa0961200-mRNA-1;Parent=Msa0961200;Name=Msa0961200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=276|1|1|1|1|1|3|409|350
chr6_3 exon 82264370 82265003 82264370 ID=Msa0961200-mRNA-1:exon:14723;Parent=Msa0961200-mRNA-1
chr6_3 exon 82265408 82265587 82265408 ID=Msa0961200-mRNA-1:exon:14722;Parent=Msa0961200-mRNA-1
chr6_3 exon 82265755 82266678 82265755 ID=Msa0961200-mRNA-1:exon:14721;Parent=Msa0961200-mRNA-1
chr6_3 five_prime_UTR 82266403 82266678 82266403 ID=Msa0961200-mRNA-1:five_prime_utr;Parent=Msa0961200-mRNA-1
chr6_3 CDS 82265755 82266402 82265755 ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3 CDS 82265408 82265587 82265408 ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3 CDS 82264779 82265003 82264779 ID=Msa0961200-mRNA-1:cds;Parent=Msa0961200-mRNA-1
chr6_3 three_prime_UTR 82264370 82264778 82264370 ID=Msa0961200-mRNA-1:three_prime_utr;Parent=Msa0961200-mRNA-1
Gene Sequence

>Msa0961200

ATGGAAGCAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATAATAGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCCTTGACATTGGTTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAGAACCTCTAGGCGAAGCTGTGTTAAAAGCTTTAGAGATCGGCCTCATAAAAAATCGCGATGAAATTTTCATTACTTCTAAGTTATGGTGCACTGATGCTCATCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGTTGTATTTATTCCTTCTCTAATTTTGTATCATTTTCTGTTGGAATTGTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGAGAGGATGTGATTCCCTTTGACATAAAAGGAACATGGAAAGCCATGGAAGATTGTTATAGATTAGGCTTAGCCAAATCTATCGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCGTACTCTTGGAAAATGCAACCATTTTACCGGCAGTTAATCAGGTAGAAATGAATCCATCATGGCAGCAAGGAAAACTTAGGGAATTCTGCAGGAACAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTTATGGAGAATCCTATTCTTCAGGAAATTGCTGAGGCTAGAAATAAGAGTGTAGCACAGATAGCACTAAGATGGATACATGAGCAAGGGACAAGTGTAATTGTGAAAAGCTTTAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTAAACCAAGAAGAATTGGACAAAATAAATAAGATTCCACAATGCAGACTTTACAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA

Protein sequence

>Msa0961200

MEANKLHEVILNSGEKMPIIGLGTATTPLPSNEALTSILVDALDIGYRHFDTASIYGTEEPLGEAVLKALEIGLIKNRDEIFITSKLWCTDAHHDLVLKALKTTLKQALFSRTFSFKVVFIPSLILYHFLLELFRNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWKAMEDCYRLGLAKSIGVSNFGIKKLSVLLENATILPAVNQVEMNPSWQQGKLREFCRNKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARNKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP*