Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273060 | XP_003593680.1 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 8.79e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273060 | sp|Q13442|HAP28_HUMAN | 54.545 | 77 | 35 | 0 | 62 | 138 | 73 | 149 | 1.20e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0156780 | Msa0273060 | 0.834201 | 3.437716e-56 | -8.615850e-47 |
| Msa0185110 | Msa0273060 | 0.955225 | 4.947215e-113 | -8.615850e-47 |
| Msa0193200 | Msa0273060 | 0.906897 | 9.073680e-81 | -8.615850e-47 |
| Msa0256170 | Msa0273060 | 0.802269 | 6.078103e-49 | -8.615850e-47 |
| Msa0273060 | Msa0295840 | 0.805967 | 1.033730e-49 | -8.615850e-47 |
| Msa0273060 | Msa0361040 | 0.806692 | 7.271778e-50 | -8.615850e-47 |
| Msa0273060 | Msa0390950 | 0.807265 | 5.499200e-50 | -8.615850e-47 |
| Msa0273060 | Msa0426890 | 0.802470 | 5.525096e-49 | -8.615850e-47 |
| Msa0273060 | Msa0687320 | 0.802971 | 4.355800e-49 | -8.615850e-47 |
| Msa0273060 | Msa0714200 | 0.809471 | 1.861677e-50 | -8.615850e-47 |
| Msa0273060 | Msa0754840 | 0.804171 | 2.455439e-49 | -8.615850e-47 |
| Msa0273060 | Msa0755590 | 0.805806 | 1.117558e-49 | -8.615850e-47 |
| Msa0273060 | Msa0766880 | 0.812214 | 4.743749e-51 | -8.615850e-47 |
| Msa0273060 | Msa0855520 | 0.804423 | 2.175380e-49 | -8.615850e-47 |
| Msa0273060 | Msa0981300 | 0.811977 | 5.344615e-51 | -8.615850e-47 |
| Msa0273060 | Msa1031220 | 0.814277 | 1.671896e-51 | -8.615850e-47 |
| Msa0273060 | Msa1173410 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0273060 | Msa1199690 | 0.802983 | 4.329133e-49 | -8.615850e-47 |
| Msa0273060 | Msa1201610 | 0.826714 | 2.331238e-54 | -8.615850e-47 |
| Msa0273060 | Msa1203860 | 0.803910 | 2.781965e-49 | -8.615850e-47 |
| Msa0273060 | Msa1294520 | 0.821779 | 3.367398e-53 | -8.615850e-47 |
| Msa0273060 | Msa1330910 | 0.808134 | 3.594886e-50 | -8.615850e-47 |
| Msa0273060 | Msa1388270 | 0.805369 | 1.380375e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273060 | MtrunA17_Chr2g0283101 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 8.08e-112 | 314 |
| Msa0273060 | MtrunA17_Chr4g0046271 | 78.125 | 160 | 34 | 1 | 1 | 159 | 1 | 160 | 4.36e-76 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0273060 | AT5G46020.1 | 67.857 | 140 | 43 | 2 | 1 | 138 | 1 | 140 | 8.72e-51 | 160 |
Find 52 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAATTGTTGATTGAAAA+TGG | 0.175282 | 2_3:+4610390 | Msa0273060:exon |
| TTCAGACTTCTTCTGCTCTT+TGG | 0.210254 | 2_3:-4612734 | None:intergenic |
| TATCTTCATAATGGATCTTA+TGG | 0.258671 | 2_3:+4612855 | Msa0273060:three_prime_UTR |
| TCTCTAGCTTTCAAGTTCTT+TGG | 0.272877 | 2_3:-4611936 | None:intergenic |
| GATCAATCAAAGAAAGATTT+AGG | 0.283638 | 2_3:+4612360 | Msa0273060:CDS |
| GTGGAGCCCGAGGAAGTATC+TGG | 0.288324 | 2_3:+4611707 | Msa0273060:CDS |
| CAAGATTTCAAGCCACATTA+TGG | 0.292701 | 2_3:-4612920 | None:intergenic |
| GGGGCTTACGAATGTCTTCC+TGG | 0.310672 | 2_3:-4610462 | None:intergenic |
| CCTTTCACGCCTTGAAAGTT+CGG | 0.349398 | 2_3:-4612064 | None:intergenic |
| AAGATCCATTATGAAGATAA+TGG | 0.364872 | 2_3:-4612851 | None:intergenic |
| GAAGTATCTGGGGATGAATC+TGG | 0.372035 | 2_3:+4611719 | Msa0273060:CDS |
| TTTGTCCATTATCTTCATAA+TGG | 0.374671 | 2_3:+4612846 | Msa0273060:three_prime_UTR |
| AAAAGACAACCGAACTTTCA+AGG | 0.404473 | 2_3:+4612055 | Msa0273060:CDS |
| TGTCTTCCTGGGTAGAAAAC+TGG | 0.421063 | 2_3:-4610450 | None:intergenic |
| CGACTAATTGGAGTAAGATT+AGG | 0.423053 | 2_3:-4612789 | None:intergenic |
| TTGAATTGTTGATTGAAAAT+GGG | 0.452422 | 2_3:+4610391 | Msa0273060:exon |
| AGAAAACTGGCGGCGACCAG+TGG | 0.466800 | 2_3:-4610437 | None:intergenic |
| AGAATTGCAGTGCTAGATAG+AGG | 0.468988 | 2_3:-4613007 | None:intergenic |
| GTGCTAGATAGAGGGTATCC+AGG | 0.478465 | 2_3:-4612998 | None:intergenic |
| TGCATTACATATTACCAACT+TGG | 0.482867 | 2_3:-4612888 | None:intergenic |
| TGAGATTGAAAATCCTAACT+TGG | 0.484016 | 2_3:+4611908 | Msa0273060:CDS |
| TGCTAGATAGAGGGTATCCA+GGG | 0.492549 | 2_3:-4612997 | None:intergenic |
| TACATATTACCAACTTGGTA+TGG | 0.493820 | 2_3:-4612883 | None:intergenic |
| AGAGCAGAAGAAGTCTGAAA+TGG | 0.498965 | 2_3:+4612738 | Msa0273060:CDS |
| CCGAACTTTCAAGGCGTGAA+AGG | 0.511076 | 2_3:+4612064 | Msa0273060:CDS |
| GGCTCTTATACGTCAGCAAA+GGG | 0.519392 | 2_3:+4612591 | Msa0273060:CDS |
| TGTTGATTGAAAATGGGAAG+AGG | 0.520448 | 2_3:+4610397 | Msa0273060:exon |
| TTCATCCCCAGATACTTCCT+CGG | 0.529253 | 2_3:-4611714 | None:intergenic |
| GAAAGAAGCTGAGAATGAAG+TGG | 0.539144 | 2_3:+4611688 | Msa0273060:intron |
| TCATCCCCAGATACTTCCTC+GGG | 0.541459 | 2_3:-4611713 | None:intergenic |
| TTGATGTTGTGCAGAACGAT+TGG | 0.559572 | 2_3:+4612570 | Msa0273060:intron |
| GAAACCTGTCTAAAAGTTCG+AGG | 0.562367 | 2_3:-4611463 | None:intergenic |
| GAGCTCATGAAAGCTATATG+AGG | 0.563002 | 2_3:+4612316 | Msa0273060:CDS |
| TGGAGCCCGAGGAAGTATCT+GGG | 0.570081 | 2_3:+4611708 | Msa0273060:CDS |
| GGGCTTACGAATGTCTTCCT+GGG | 0.577937 | 2_3:-4610461 | None:intergenic |
| TGAGAATGAAGTGGAGCCCG+AGG | 0.580068 | 2_3:+4611697 | Msa0273060:CDS |
| GCAATTATTCCACCATAATG+TGG | 0.580537 | 2_3:+4612908 | Msa0273060:three_prime_UTR |
| TGGCTCTTATACGTCAGCAA+AGG | 0.586434 | 2_3:+4612590 | Msa0273060:CDS |
| AAACGAAATGAAGAGAAAGC+TGG | 0.589158 | 2_3:+4612628 | Msa0273060:CDS |
| GAAAACTGGCGGCGACCAGT+GGG | 0.589542 | 2_3:-4610436 | None:intergenic |
| CTAATCTTACTCCAATTAGT+CGG | 0.594618 | 2_3:+4612790 | Msa0273060:three_prime_UTR |
| GATTTCAAGCCACATTATGG+TGG | 0.596397 | 2_3:-4612917 | None:intergenic |
| AAAAGTTCGAGGACGGCTAG+TGG | 0.596889 | 2_3:-4611452 | None:intergenic |
| TATATGAGGCTTCAAGAGCA+AGG | 0.600727 | 2_3:+4612330 | Msa0273060:CDS |
| ATGGTGTTACCATACCAAGT+TGG | 0.607773 | 2_3:+4612874 | Msa0273060:three_prime_UTR |
| AAATTCAAGAGCAAGCCCAC+TGG | 0.611119 | 2_3:+4610421 | Msa0273060:CDS |
| GAATTGCAGTGCTAGATAGA+GGG | 0.628212 | 2_3:-4613006 | None:intergenic |
| CCTGTCTAAAAGTTCGAGGA+CGG | 0.634455 | 2_3:-4611459 | None:intergenic |
| GGAGCCCGAGGAAGTATCTG+GGG | 0.684631 | 2_3:+4611709 | Msa0273060:CDS |
| CTTCCTGGGTAGAAAACTGG+CGG | 0.712794 | 2_3:-4610447 | None:intergenic |
| GCTAGATAGAGGGTATCCAG+GGG | 0.718383 | 2_3:-4612996 | None:intergenic |
| ACACGCAAGTGAATGTTGTG+TGG | 0.729696 | 2_3:+4612766 | Msa0273060:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAACATAAATAATTGA+AGG | - | chr2_3:4612544-4612563 | None:intergenic | 10.0% |
| !! | TCTTAATAAAATCAATCATA+GGG | - | chr2_3:4611167-4611186 | None:intergenic | 15.0% |
| !!! | TTGTTATTCTTATTAATGTA+AGG | + | chr2_3:4611242-4611261 | Msa0273060:intron | 15.0% |
| !! | TGTTATTCTTATTAATGTAA+GGG | + | chr2_3:4611243-4611262 | Msa0273060:intron | 15.0% |
| !!! | GATTAATTTTTATATGGATA+TGG | + | chr2_3:4611588-4611607 | Msa0273060:intron | 15.0% |
| !!! | AAACTATTTATTTGTTTCTA+TGG | + | chr2_3:4611806-4611825 | Msa0273060:intron | 15.0% |
| !! | TAATTTATACAGAAGAAAAA+AGG | + | chr2_3:4611870-4611889 | Msa0273060:intron | 15.0% |
| !!! | ACATTTTTTATTTTTTCAAG+TGG | + | chr2_3:4612151-4612170 | Msa0273060:intron | 15.0% |
| !!! | ATTGAATTGTTGATTGAAAA+TGG | + | chr2_3:4610390-4610409 | Msa0273060:exon | 20.0% |
| !!! | TTGAATTGTTGATTGAAAAT+GGG | + | chr2_3:4610391-4610410 | Msa0273060:exon | 20.0% |
| !! | TAATAAAATATTGTGCTTTG+TGG | + | chr2_3:4610604-4610623 | Msa0273060:intron | 20.0% |
| !! | GTCTTAATAAAATCAATCAT+AGG | - | chr2_3:4611168-4611187 | None:intergenic | 20.0% |
| !! | GTTATTCTTATTAATGTAAG+GGG | + | chr2_3:4611244-4611263 | Msa0273060:intron | 20.0% |
| !!! | AGTGACGATTAATTTTTATA+TGG | + | chr2_3:4611582-4611601 | Msa0273060:intron | 20.0% |
| !!! | TTAATTTGCTTCTTTAAAAG+TGG | + | chr2_3:4612097-4612116 | Msa0273060:intron | 20.0% |
| !!! | CATGTTCATAAACTGTTTTT+TGG | - | chr2_3:4610750-4610769 | None:intergenic | 25.0% |
| ! | GTTATACTAATAATGTATCG+CGG | + | chr2_3:4610975-4610994 | Msa0273060:intron | 25.0% |
| ! | TAAGTTCGAAATTAGAGAAT+TGG | - | chr2_3:4611287-4611306 | None:intergenic | 25.0% |
| !!! | GTTTTCTTTAGAGAAGAAAA+GGG | - | chr2_3:4611351-4611370 | None:intergenic | 25.0% |
| !!! | TGTTTTCTTTAGAGAAGAAA+AGG | - | chr2_3:4611352-4611371 | None:intergenic | 25.0% |
| ! | ATGTAAAATACAGTTAAACG+TGG | - | chr2_3:4611643-4611662 | None:intergenic | 25.0% |
| !! | ACGTTTAACTGTATTTTACA+TGG | + | chr2_3:4611642-4611661 | Msa0273060:intron | 25.0% |
| !!! | AGAATAATGTTATTTTCGTG+TGG | + | chr2_3:4612022-4612041 | Msa0273060:intron | 25.0% |
| ! | AATTCCTTATGTTCTCATAT+TGG | + | chr2_3:4612202-4612221 | Msa0273060:intron | 25.0% |
| ! | ATTCCTTATGTTCTCATATT+GGG | + | chr2_3:4612203-4612222 | Msa0273060:intron | 25.0% |
| ! | GATCAATCAAAGAAAGATTT+AGG | + | chr2_3:4612360-4612379 | Msa0273060:CDS | 25.0% |
| !! | CAAACAAAGCATGTTAATTT+TGG | - | chr2_3:4612511-4612530 | None:intergenic | 25.0% |
| !! | CAAAATTAACATGCTTTGTT+TGG | + | chr2_3:4612509-4612528 | Msa0273060:intron | 25.0% |
| ! | TTTGTCCATTATCTTCATAA+TGG | + | chr2_3:4612846-4612865 | Msa0273060:three_prime_UTR | 25.0% |
| ! | AAGATCCATTATGAAGATAA+TGG | - | chr2_3:4612854-4612873 | None:intergenic | 25.0% |
| !!! | TATCTTCATAATGGATCTTA+TGG | + | chr2_3:4612855-4612874 | Msa0273060:three_prime_UTR | 25.0% |
| AAAACCCAGAAAGCAAAAAA+TGG | - | chr2_3:4610492-4610511 | None:intergenic | 30.0% | |
| ATGTCATAAGCCGTTATATT+GGG | + | chr2_3:4610767-4610786 | Msa0273060:intron | 30.0% | |
| TCAGTTATTTAACCAGTTCT+AGG | + | chr2_3:4610845-4610864 | Msa0273060:intron | 30.0% | |
| CAAATTCTACTACTCTACAA+TGG | + | chr2_3:4610919-4610938 | Msa0273060:intron | 30.0% | |
| TATAACGTGTTGTCAAATAG+TGG | - | chr2_3:4610961-4610980 | None:intergenic | 30.0% | |
| TTAATCATAGAAAGAACCTC+TGG | + | chr2_3:4611391-4611410 | Msa0273060:intron | 30.0% | |
| AAGAAACAATAAGTTTCCAG+AGG | - | chr2_3:4611410-4611429 | None:intergenic | 30.0% | |
| AGTTAAACGTGGAAAGAAAA+TGG | - | chr2_3:4611632-4611651 | None:intergenic | 30.0% | |
| TTCTCAGCTTCTTTCTAATA+AGG | - | chr2_3:4611683-4611702 | None:intergenic | 30.0% | |
| !!! | CACAATCTTTGCATTTTTTG+AGG | + | chr2_3:4611777-4611796 | Msa0273060:intron | 30.0% |
| AGAAGAAAAAAGGAACTCAA+GGG | + | chr2_3:4611880-4611899 | Msa0273060:intron | 30.0% | |
| TGAGATTGAAAATCCTAACT+TGG | + | chr2_3:4611908-4611927 | Msa0273060:CDS | 30.0% | |
| !!! | TTCTTTGGTTTTACCAAGTT+AGG | - | chr2_3:4611924-4611943 | None:intergenic | 30.0% |
| !! | CATTACATAGTCATTTTCAG+AGG | + | chr2_3:4611991-4612010 | Msa0273060:intron | 30.0% |
| !! | TAGTCATTTTCAGAGGAATT+TGG | + | chr2_3:4611998-4612017 | Msa0273060:intron | 30.0% |
| TATTGGGCTATTATTGAAAC+TGG | + | chr2_3:4612219-4612238 | Msa0273060:intron | 30.0% | |
| ! | ATGTGATAATGTCAAACGTA+CGG | - | chr2_3:4612439-4612458 | None:intergenic | 30.0% |
| ! | AACAATCAGTTTCATGCTTT+TGG | - | chr2_3:4612697-4612716 | None:intergenic | 30.0% |
| CTAATCTTACTCCAATTAGT+CGG | + | chr2_3:4612790-4612809 | Msa0273060:three_prime_UTR | 30.0% | |
| ! | TACATTTTCATCCGACTAAT+TGG | - | chr2_3:4612804-4612823 | None:intergenic | 30.0% |
| TACATATTACCAACTTGGTA+TGG | - | chr2_3:4612886-4612905 | None:intergenic | 30.0% | |
| TGCATTACATATTACCAACT+TGG | - | chr2_3:4612891-4612910 | None:intergenic | 30.0% | |
| !! | TGCAATTCTTTTAGGAAAGT+AGG | + | chr2_3:4613021-4613040 | Msa0273060:three_prime_UTR | 30.0% |
| !! | GCAATTCTTTTAGGAAAGTA+GGG | + | chr2_3:4613022-4613041 | Msa0273060:three_prime_UTR | 30.0% |
| !! | CAATTCTTTTAGGAAAGTAG+GGG | + | chr2_3:4613023-4613042 | Msa0273060:three_prime_UTR | 30.0% |
| ! | TGTTGATTGAAAATGGGAAG+AGG | + | chr2_3:4610397-4610416 | Msa0273060:exon | 35.0% |
| AGAAAGCAAAAAATGGAGGA+GGG | - | chr2_3:4610485-4610504 | None:intergenic | 35.0% | |
| !!! | TCCTCCATTTTTTGCTTTCT+GGG | + | chr2_3:4610485-4610504 | Msa0273060:intron | 35.0% |
| ATATTGTGCTTTGTGGATGA+AGG | + | chr2_3:4610611-4610630 | Msa0273060:intron | 35.0% | |
| CATGTCATAAGCCGTTATAT+TGG | + | chr2_3:4610766-4610785 | Msa0273060:intron | 35.0% | |
| TTGTCAAATAGTGGCTATAG+CGG | - | chr2_3:4610952-4610971 | None:intergenic | 35.0% | |
| AGTATAACACTATGTCGTAG+CGG | - | chr2_3:4611024-4611043 | None:intergenic | 35.0% | |
| AAACCTACTAAGATGTGTAG+AGG | - | chr2_3:4611086-4611105 | None:intergenic | 35.0% | |
| TCTACACATCTTAGTAGGTT+TGG | + | chr2_3:4611085-4611104 | Msa0273060:intron | 35.0% | |
| ATCTTAGTAGGTTTGGCAAA+GGG | + | chr2_3:4611092-4611111 | Msa0273060:intron | 35.0% | |
| ATGCTGAGGAAGTTACATAT+TGG | + | chr2_3:4611208-4611227 | Msa0273060:intron | 35.0% | |
| CAGAAGAAAAAAGGAACTCA+AGG | + | chr2_3:4611879-4611898 | Msa0273060:intron | 35.0% | |
| !! | TCTCTAGCTTTCAAGTTCTT+TGG | - | chr2_3:4611939-4611958 | None:intergenic | 35.0% |
| TGAGTTCAACTTACCATGTT+TGG | + | chr2_3:4611967-4611986 | Msa0273060:intron | 35.0% | |
| GACTATGTAATGACCAAACA+TGG | - | chr2_3:4611983-4612002 | None:intergenic | 35.0% | |
| AAAAGACAACCGAACTTTCA+AGG | + | chr2_3:4612055-4612074 | Msa0273060:CDS | 35.0% | |
| !! | ACACAATCATGCTCTAAAAG+AGG | + | chr2_3:4612128-4612147 | Msa0273060:intron | 35.0% |
| TAGCCCAATATGAGAACATA+AGG | - | chr2_3:4612209-4612228 | None:intergenic | 35.0% | |
| ! | TGTGATAATGTCAAACGTAC+GGG | - | chr2_3:4612438-4612457 | None:intergenic | 35.0% |
| AAACGAAATGAAGAGAAAGC+TGG | + | chr2_3:4612628-4612647 | Msa0273060:CDS | 35.0% | |
| CGACTAATTGGAGTAAGATT+AGG | - | chr2_3:4612792-4612811 | None:intergenic | 35.0% | |
| GCAATTATTCCACCATAATG+TGG | + | chr2_3:4612908-4612927 | Msa0273060:three_prime_UTR | 35.0% | |
| CAAGATTTCAAGCCACATTA+TGG | - | chr2_3:4612923-4612942 | None:intergenic | 35.0% | |
| ! | TCTAGCACTGCAATTCTTTT+AGG | + | chr2_3:4613013-4613032 | Msa0273060:three_prime_UTR | 35.0% |
| GAAAGCAAAAAATGGAGGAG+GGG | - | chr2_3:4610484-4610503 | None:intergenic | 40.0% | |
| CAGAAAGCAAAAAATGGAGG+AGG | - | chr2_3:4610486-4610505 | None:intergenic | 40.0% | |
| !!! | CTCCTCCATTTTTTGCTTTC+TGG | + | chr2_3:4610484-4610503 | Msa0273060:intron | 40.0% |
| ACCCAGAAAGCAAAAAATGG+AGG | - | chr2_3:4610489-4610508 | None:intergenic | 40.0% | |
| GCCACATCTTCCCAATATAA+CGG | - | chr2_3:4610780-4610799 | None:intergenic | 40.0% | |
| TATATTGGGAAGATGTGGCT+TGG | + | chr2_3:4610781-4610800 | Msa0273060:intron | 40.0% | |
| TAACGATCACTTCCTAGAAC+TGG | - | chr2_3:4610860-4610879 | None:intergenic | 40.0% | |
| TCACATATTGCGAAGAACAG+CGG | + | chr2_3:4610890-4610909 | Msa0273060:intron | 40.0% | |
| GATCCTCTACACATCTTAGT+AGG | + | chr2_3:4611080-4611099 | Msa0273060:intron | 40.0% | |
| CATCTTAGTAGGTTTGGCAA+AGG | + | chr2_3:4611091-4611110 | Msa0273060:intron | 40.0% | |
| !! | AAAAGGGCACAAAAGGGTTT+TGG | - | chr2_3:4611335-4611354 | None:intergenic | 40.0% |
| ! | GAGAAGAAAAGGGCACAAAA+GGG | - | chr2_3:4611341-4611360 | None:intergenic | 40.0% |
| ! | AGAGAAGAAAAGGGCACAAA+AGG | - | chr2_3:4611342-4611361 | None:intergenic | 40.0% |
| GAAACCTGTCTAAAAGTTCG+AGG | - | chr2_3:4611466-4611485 | None:intergenic | 40.0% | |
| TTTGAGGAGAGGAGTAAAAG+GGG | - | chr2_3:4611510-4611529 | None:intergenic | 40.0% | |
| GTTTGAGGAGAGGAGTAAAA+GGG | - | chr2_3:4611511-4611530 | None:intergenic | 40.0% | |
| TGTTTGAGGAGAGGAGTAAA+AGG | - | chr2_3:4611512-4611531 | None:intergenic | 40.0% | |
| AGTGATCACATGCATGTTTG+AGG | - | chr2_3:4611526-4611545 | None:intergenic | 40.0% | |
| GAAAGAAGCTGAGAATGAAG+TGG | + | chr2_3:4611688-4611707 | Msa0273060:intron | 40.0% | |
| !!! | TGTTATTTTCGTGTGGATGC+AGG | + | chr2_3:4612029-4612048 | Msa0273060:intron | 40.0% |
| ! | ATTCCTTCTTGTTTGCAGAG+AGG | + | chr2_3:4612278-4612297 | Msa0273060:intron | 40.0% |
| GAGCTCATGAAAGCTATATG+AGG | + | chr2_3:4612316-4612335 | Msa0273060:CDS | 40.0% | |
| TATATGAGGCTTCAAGAGCA+AGG | + | chr2_3:4612330-4612349 | Msa0273060:CDS | 40.0% | |
| TTGATGTTGTGCAGAACGAT+TGG | + | chr2_3:4612570-4612589 | Msa0273060:intron | 40.0% | |
| TTCAGACTTCTTCTGCTCTT+TGG | - | chr2_3:4612737-4612756 | None:intergenic | 40.0% | |
| AGAGCAGAAGAAGTCTGAAA+TGG | + | chr2_3:4612738-4612757 | Msa0273060:CDS | 40.0% | |
| !! | ATGGTGTTACCATACCAAGT+TGG | + | chr2_3:4612874-4612893 | Msa0273060:three_prime_UTR | 40.0% |
| GATTTCAAGCCACATTATGG+TGG | - | chr2_3:4612920-4612939 | None:intergenic | 40.0% | |
| ! | ACTTTTCTTCACATCGATGC+TGG | + | chr2_3:4612954-4612973 | Msa0273060:three_prime_UTR | 40.0% |
| ! | CTTTTCTTCACATCGATGCT+GGG | + | chr2_3:4612955-4612974 | Msa0273060:three_prime_UTR | 40.0% |
| GAATTGCAGTGCTAGATAGA+GGG | - | chr2_3:4613009-4613028 | None:intergenic | 40.0% | |
| AGAATTGCAGTGCTAGATAG+AGG | - | chr2_3:4613010-4613029 | None:intergenic | 40.0% | |
| AAATTCAAGAGCAAGCCCAC+TGG | + | chr2_3:4610421-4610440 | Msa0273060:CDS | 45.0% | |
| TGTCTTCCTGGGTAGAAAAC+TGG | - | chr2_3:4610453-4610472 | None:intergenic | 45.0% | |
| GCCGTTATATTGGGAAGATG+TGG | + | chr2_3:4610776-4610795 | Msa0273060:intron | 45.0% | |
| ! | TCTGATTTCTCAGTGCCACT+TGG | - | chr2_3:4610812-4610831 | None:intergenic | 45.0% |
| ! | TGGCACTGAGAAATCAGACA+GGG | + | chr2_3:4610814-4610833 | Msa0273060:intron | 45.0% |
| ! | ACACTATGTCGTAGCGGAAT+TGG | - | chr2_3:4611018-4611037 | None:intergenic | 45.0% |
| TCACCAGTGTCGTCAAATAG+TGG | - | chr2_3:4611051-4611070 | None:intergenic | 45.0% | |
| AGGTTTGGCAAAGGGAAATG+TGG | + | chr2_3:4611100-4611119 | Msa0273060:intron | 45.0% | |
| GGTTTGGCAAAGGGAAATGT+GGG | + | chr2_3:4611101-4611120 | Msa0273060:intron | 45.0% | |
| GTTTGGCAAAGGGAAATGTG+GGG | + | chr2_3:4611102-4611121 | Msa0273060:intron | 45.0% | |
| !! | CTTTTGACTACTGCAGTTGC+TGG | + | chr2_3:4611427-4611446 | Msa0273060:intron | 45.0% |
| CCTGTCTAAAAGTTCGAGGA+CGG | - | chr2_3:4611462-4611481 | None:intergenic | 45.0% | |
| AGTAAAAGGGGGAAGAGGAA+AGG | - | chr2_3:4611498-4611517 | None:intergenic | 45.0% | |
| TTGAGGAGAGGAGTAAAAGG+GGG | - | chr2_3:4611509-4611528 | None:intergenic | 45.0% | |
| TCACATGCATGTTTGAGGAG+AGG | - | chr2_3:4611521-4611540 | None:intergenic | 45.0% | |
| TTCATCCCCAGATACTTCCT+CGG | - | chr2_3:4611717-4611736 | None:intergenic | 45.0% | |
| ! | GAAGTATCTGGGGATGAATC+TGG | + | chr2_3:4611719-4611738 | Msa0273060:CDS | 45.0% |
| CCTTTCACGCCTTGAAAGTT+CGG | - | chr2_3:4612067-4612086 | None:intergenic | 45.0% | |
| TCTCCTCTCTGCAAACAAGA+AGG | - | chr2_3:4612284-4612303 | None:intergenic | 45.0% | |
| TGGCTCTTATACGTCAGCAA+AGG | + | chr2_3:4612590-4612609 | Msa0273060:CDS | 45.0% | |
| GGCTCTTATACGTCAGCAAA+GGG | + | chr2_3:4612591-4612610 | Msa0273060:CDS | 45.0% | |
| ACACGCAAGTGAATGTTGTG+TGG | + | chr2_3:4612766-4612785 | Msa0273060:exon | 45.0% | |
| ! | CAGCTTATTGTTTTCTCCCC+TGG | + | chr2_3:4612980-4612999 | Msa0273060:three_prime_UTR | 45.0% |
| !! | TGCTAGATAGAGGGTATCCA+GGG | - | chr2_3:4613000-4613019 | None:intergenic | 45.0% |
| CTTCCTGGGTAGAAAACTGG+CGG | - | chr2_3:4610450-4610469 | None:intergenic | 50.0% | |
| GGGCTTACGAATGTCTTCCT+GGG | - | chr2_3:4610464-4610483 | None:intergenic | 50.0% | |
| ! | GTGGCACTGAGAAATCAGAC+AGG | + | chr2_3:4610813-4610832 | Msa0273060:intron | 50.0% |
| CCAGTGTCGTCAAATAGTGG+TGG | - | chr2_3:4611048-4611067 | None:intergenic | 50.0% | |
| CCACCACTATTTGACGACAC+TGG | + | chr2_3:4611045-4611064 | Msa0273060:intron | 50.0% | |
| AGTTCAGTGCGTCAATGCTG+AGG | + | chr2_3:4611194-4611213 | Msa0273060:intron | 50.0% | |
| AAAAGTTCGAGGACGGCTAG+TGG | - | chr2_3:4611455-4611474 | None:intergenic | 50.0% | |
| ! | CCGTCCTCGAACTTTTAGAC+AGG | + | chr2_3:4611459-4611478 | Msa0273060:CDS | 50.0% |
| GGAAGAGGAAAGGATGCAGA+AGG | - | chr2_3:4611488-4611507 | None:intergenic | 50.0% | |
| AGAGGAGTAAAAGGGGGAAG+AGG | - | chr2_3:4611503-4611522 | None:intergenic | 50.0% | |
| TCATCCCCAGATACTTCCTC+GGG | - | chr2_3:4611716-4611735 | None:intergenic | 50.0% | |
| CCGAACTTTCAAGGCGTGAA+AGG | + | chr2_3:4612064-4612083 | Msa0273060:CDS | 50.0% | |
| !! | GCTAGATAGAGGGTATCCAG+GGG | - | chr2_3:4612999-4613018 | None:intergenic | 50.0% |
| !! | GTGCTAGATAGAGGGTATCC+AGG | - | chr2_3:4613001-4613020 | None:intergenic | 50.0% |
| GGGGCTTACGAATGTCTTCC+TGG | - | chr2_3:4610465-4610484 | None:intergenic | 55.0% | |
| ! | TTGGGAAGATGTGGCTTGGC+TGG | + | chr2_3:4610785-4610804 | Msa0273060:intron | 55.0% |
| TGAGAATGAAGTGGAGCCCG+AGG | + | chr2_3:4611697-4611716 | Msa0273060:CDS | 55.0% | |
| !! | TGGAGCCCGAGGAAGTATCT+GGG | + | chr2_3:4611708-4611727 | Msa0273060:CDS | 55.0% |
| GAAAACTGGCGGCGACCAGT+GGG | - | chr2_3:4610439-4610458 | None:intergenic | 60.0% | |
| AGAAAACTGGCGGCGACCAG+TGG | - | chr2_3:4610440-4610459 | None:intergenic | 60.0% | |
| ! | TCGCCGCCAGTTTTCTACCC+AGG | + | chr2_3:4610444-4610463 | Msa0273060:CDS | 60.0% |
| ! | TGTGGCTTGGCTGGTCCAAG+TGG | + | chr2_3:4610794-4610813 | Msa0273060:intron | 60.0% |
| !! | GTGGAGCCCGAGGAAGTATC+TGG | + | chr2_3:4611707-4611726 | Msa0273060:CDS | 60.0% |
| !! | GGAGCCCGAGGAAGTATCTG+GGG | + | chr2_3:4611709-4611728 | Msa0273060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4610385 | 4613072 | 4610385 | ID=Msa0273060;Name=Msa0273060 |
| chr2_3 | mRNA | 4610385 | 4613072 | 4610385 | ID=Msa0273060-mRNA-1;Parent=Msa0273060;Name=Msa0273060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|1|1|8|295|165 |
| chr2_3 | exon | 4610385 | 4610475 | 4610385 | ID=Msa0273060-mRNA-1:exon:2270;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4611443 | 4611480 | 4611443 | ID=Msa0273060-mRNA-1:exon:2271;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4611689 | 4611766 | 4611689 | ID=Msa0273060-mRNA-1:exon:2272;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4611882 | 4611965 | 4611882 | ID=Msa0273060-mRNA-1:exon:2273;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4612051 | 4612085 | 4612051 | ID=Msa0273060-mRNA-1:exon:2274;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4612296 | 4612381 | 4612296 | ID=Msa0273060-mRNA-1:exon:2275;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4612584 | 4612649 | 4612584 | ID=Msa0273060-mRNA-1:exon:2276;Parent=Msa0273060-mRNA-1 |
| chr2_3 | exon | 4612734 | 4613072 | 4612734 | ID=Msa0273060-mRNA-1:exon:2277;Parent=Msa0273060-mRNA-1 |
| chr2_3 | five_prime_UTR | 4610385 | 4610408 | 4610385 | ID=Msa0273060-mRNA-1:five_prime_utr;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4610409 | 4610475 | 4610409 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4611443 | 4611480 | 4611443 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4611689 | 4611766 | 4611689 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4611882 | 4611965 | 4611882 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4612051 | 4612085 | 4612051 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4612296 | 4612381 | 4612296 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4612584 | 4612649 | 4612584 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | CDS | 4612734 | 4612777 | 4612734 | ID=Msa0273060-mRNA-1:cds;Parent=Msa0273060-mRNA-1 |
| chr2_3 | three_prime_UTR | 4612778 | 4613072 | 4612778 | ID=Msa0273060-mRNA-1:three_prime_utr;Parent=Msa0273060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
