AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0361040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361040 MtrunA17_Chr3g0099231 80.670 388 14 2 1 327 1 388 0.0 619
Msa0361040 MtrunA17_Chr3g0099161 59.003 361 85 4 1 298 64 424 4.82e-144 413
Msa0361040 MtrunA17_Chr3g0099151 57.143 364 92 5 1 300 59 422 6.04e-142 407
Msa0361040 MtrunA17_Chr5g0444401 53.161 348 101 3 13 298 13 360 3.54e-126 365
Msa0361040 MtrunA17_Chr3g0077571 27.548 363 192 5 1 300 3 357 3.47e-48 165
Msa0361040 MtrunA17_Chr4g0017431 26.879 346 181 5 21 300 24 363 1.48e-47 164
Msa0361040 MtrunA17_Chr8g0374101 29.589 365 182 8 7 297 10 373 4.74e-45 157
Msa0361040 MtrunA17_Chr4g0068441 26.923 364 191 7 2 299 13 367 3.55e-44 155
Msa0361040 MtrunA17_Chr1g0189901 29.050 358 177 8 9 298 13 361 9.73e-43 151
Msa0361040 MtrunA17_Chr5g0434621 26.727 333 172 6 15 282 12 337 3.06e-42 149
Msa0361040 MtrunA17_Chr2g0294301 27.869 366 188 7 4 298 6 366 3.22e-42 150
Msa0361040 MtrunA17_Chr7g0215961 29.240 342 178 8 14 298 16 350 6.95e-42 149
Msa0361040 MtrunA17_Chr7g0274991 27.679 336 173 4 28 298 33 363 1.99e-41 147
Msa0361040 MtrunA17_Chr8g0370951 26.629 353 190 7 16 301 19 369 1.58e-40 145
Msa0361040 MtrunA17_Chr4g0008851 27.747 364 190 7 2 298 7 364 4.99e-40 144
Msa0361040 MtrunA17_Chr8g0370981 27.000 400 178 9 9 298 22 417 5.67e-40 145
Msa0361040 MtrunA17_Chr3g0092131 25.753 365 192 6 9 308 3 353 9.47e-40 143
Msa0361040 MtrunA17_Chr7g0275021 27.147 361 186 7 9 298 10 364 3.23e-39 142
Msa0361040 MtrunA17_Chr1g0189931 27.901 362 183 7 6 298 10 362 4.81e-39 141
Msa0361040 MtrunA17_Chr4g0060811 25.949 316 166 5 30 281 29 340 9.28e-39 140
Msa0361040 MtrunA17_Chr3g0131321 26.849 365 191 8 4 297 7 366 1.05e-38 141
Msa0361040 MtrunA17_Chr7g0275001 28.024 339 169 5 28 298 25 356 1.91e-38 139
Msa0361040 MtrunA17_Chr3g0086641 28.319 339 177 6 25 300 35 370 4.75e-38 139
Msa0361040 MtrunA17_Chr2g0301641 27.954 347 168 7 28 302 43 379 5.21e-38 139
Msa0361040 MtrunA17_Chr2g0285061 27.493 371 192 8 1 300 1 365 1.38e-37 137
Msa0361040 MtrunA17_Chr8g0380041 26.822 343 177 7 25 300 28 363 7.53e-37 135
Msa0361040 MtrunA17_Chr2g0320671 28.977 352 169 12 2 281 1 343 7.62e-37 135
Msa0361040 MtrunA17_Chr1g0182811 27.515 338 173 8 28 298 33 365 2.01e-36 134
Msa0361040 MtrunA17_Chr7g0275011 27.059 340 176 5 28 301 34 367 2.63e-36 134
Msa0361040 MtrunA17_Chr2g0294311 25.862 348 177 6 27 299 31 372 1.72e-35 132
Msa0361040 MtrunA17_Chr5g0420811 27.635 351 167 11 4 282 1 336 2.58e-35 131
Msa0361040 MtrunA17_Chr6g0457921 27.147 361 184 8 10 298 7 360 1.13e-34 129
Msa0361040 MtrunA17_Chr8g0370961 27.193 228 127 2 109 297 15 242 1.07e-33 124
Msa0361040 MtrunA17_Chr1g0189891 27.222 360 187 9 7 301 8 357 3.52e-33 125
Msa0361040 MtrunA17_Chr8g0349331 27.485 342 195 9 1 299 1 332 3.31e-32 122
Msa0361040 MtrunA17_Chr8g0371491 28.144 334 156 11 16 277 24 345 3.32e-32 123
Msa0361040 MtrunA17_Chr2g0283191 27.874 348 166 11 4 271 8 350 3.39e-32 123
Msa0361040 MtrunA17_Chr8g0341001 27.273 352 179 11 1 281 1 346 6.33e-32 122
Msa0361040 MtrunA17_Chr4g0046151 26.997 363 173 10 8 284 10 366 1.24e-31 121
Msa0361040 MtrunA17_Chr1g0156921 27.190 331 168 9 26 289 40 364 1.27e-31 121
Msa0361040 MtrunA17_Chr3g0077581 25.872 344 181 8 22 297 30 367 1.92e-29 115
Msa0361040 MtrunA17_Chr8g0349321 26.471 374 190 11 1 299 1 364 4.29e-29 114
Msa0361040 MtrunA17_Chr8g0349341 26.810 373 188 11 1 298 1 363 5.31e-29 114
Msa0361040 MtrunA17_Chr5g0405821 26.074 326 171 7 24 283 39 360 6.18e-29 114
Msa0361040 MtrunA17_Chr5g0405831 27.019 322 160 10 24 277 39 353 7.09e-29 114
Msa0361040 MtrunA17_Chr1g0156931 27.654 358 176 9 1 281 1 352 1.38e-28 113
Msa0361040 MtrunA17_Chr2g0330781 28.144 334 164 10 18 281 18 345 1.69e-28 112
Msa0361040 MtrunA17_Chr5g0396511 24.629 337 179 8 30 298 48 377 3.54e-28 112
Msa0361040 MtrunA17_Chr8g0344931 24.926 337 185 8 24 300 33 361 4.42e-28 112
Msa0361040 MtrunA17_Chr5g0432101 27.726 321 158 9 25 277 30 344 5.01e-28 112
Msa0361040 MtrunA17_Chr8g0344941 26.935 323 161 11 28 282 41 356 2.66e-27 110
Msa0361040 MtrunA17_Chr5g0438641 25.387 323 167 9 23 278 27 342 1.23e-26 107
Msa0361040 MtrunA17_Chr1g0156911 27.273 319 157 8 27 278 36 346 3.27e-26 106
Msa0361040 MtrunA17_Chr4g0027521 25.460 326 166 10 26 281 25 343 5.49e-26 105
Msa0361040 MtrunA17_Chr5g0438631 26.852 324 162 10 26 281 26 342 8.17e-26 105
Msa0361040 MtrunA17_Chr5g0438621 25.157 318 174 7 26 281 28 343 8.90e-26 105
Msa0361040 MtrunA17_Chr3g0105401 23.563 348 193 8 1 281 1 342 1.81e-25 104
Msa0361040 MtrunA17_Chr3g0085881 25.146 342 176 8 23 300 28 353 3.60e-25 103
Msa0361040 MtrunA17_Chr8g0380031 22.849 372 189 11 2 298 56 404 1.07e-24 103
Msa0361040 MtrunA17_Chr5g0437421 24.688 320 176 8 25 279 29 348 2.03e-23 99.0
Msa0361040 MtrunA17_Chr1g0189911 33.566 143 92 1 159 298 2 144 2.37e-23 94.0
Msa0361040 MtrunA17_Chr3g0120861 23.404 329 176 7 21 281 31 351 3.98e-23 98.2
Msa0361040 MtrunA17_Chr6g0455661 33.974 156 99 4 147 300 319 472 1.16e-22 98.2
Msa0361040 MtrunA17_Chr6g0459921 33.974 156 99 4 147 300 208 361 1.28e-22 97.1
Msa0361040 MtrunA17_Chr3g0085231 23.824 340 176 8 26 300 29 350 1.38e-22 96.7
Msa0361040 MtrunA17_Chr1g0156901 25.360 347 176 10 4 278 24 359 2.00e-22 96.3
Msa0361040 MtrunA17_Chr3g0142941 25.552 317 167 9 26 278 45 356 5.83e-22 95.1
Msa0361040 MtrunA17_Chr2g0285001 23.280 378 199 12 1 302 1 363 9.45e-22 94.7
Msa0361040 MtrunA17_Chr2g0284951 24.119 369 189 12 7 302 7 357 1.01e-21 94.4
Msa0361040 MtrunA17_Chr8g0371471 25.815 368 172 14 1 281 1 354 1.20e-21 94.4
Msa0361040 MtrunA17_Chr1g0156891 26.549 339 178 8 10 278 16 353 1.39e-21 94.0
Msa0361040 MtrunA17_Chr3g0142921 26.087 322 164 9 27 281 35 349 2.97e-21 92.8
Msa0361040 MtrunA17_Chr8g0371481 24.699 332 161 10 27 283 40 357 8.17e-21 91.7
Msa0361040 MtrunA17_Chr6g0450731 26.300 327 162 9 27 284 32 348 1.06e-19 88.6
Msa0361040 MtrunA17_Chr2g0284991 22.443 352 192 9 25 308 30 368 4.16e-19 87.0
Msa0361040 MtrunA17_Chr7g0229581 30.216 139 93 2 147 281 8 146 1.18e-18 81.6
Msa0361040 MtrunA17_Chr2g0284941 23.919 347 160 11 25 302 30 341 4.37e-18 84.0
Msa0361040 MtrunA17_Chr7g0226911 24.093 386 175 13 2 284 1 371 5.78e-18 84.0
Msa0361040 MtrunA17_Chr7g0226941 26.286 350 166 14 27 293 32 372 8.54e-18 83.2
Msa0361040 MtrunA17_Chr4g0027571 29.371 143 97 2 143 281 71 213 9.80e-18 80.9
Msa0361040 MtrunA17_Chr8g0349301 24.188 277 148 7 28 248 37 307 1.14e-17 82.4
Msa0361040 MtrunA17_Chr5g0440501 28.221 163 106 3 147 298 87 249 2.78e-17 80.1
Msa0361040 MtrunA17_Chr7g0226931 22.396 384 193 12 1 284 7 385 2.97e-17 82.0
Msa0361040 MtrunA17_Chr1g0160011 25.664 339 163 13 27 284 39 369 4.66e-17 81.3
Msa0361040 MtrunA17_Chr7g0228261 37.500 80 50 0 219 298 11 90 6.60e-17 75.1
Msa0361040 MtrunA17_Chr4g0057991 24.047 341 168 13 29 291 40 367 7.26e-17 80.5
Msa0361040 MtrunA17_Chr4g0018571 29.936 157 104 3 129 281 15 169 1.18e-16 76.6
Msa0361040 MtrunA17_Chr1g0157001 25.168 298 163 6 33 271 41 337 1.44e-16 79.7
Msa0361040 MtrunA17_Chr7g0275291 27.513 189 109 5 129 291 181 367 2.79e-16 79.0
Msa0361040 MtrunA17_Chr7g0271551 30.128 156 96 5 147 291 203 356 2.89e-16 78.6
Msa0361040 MtrunA17_Chr1g0159991 25.937 347 166 14 27 291 35 372 1.45e-15 76.6
Msa0361040 MtrunA17_Chr1g0160031 31.818 154 89 3 147 284 215 368 3.58e-15 75.5
Msa0361040 MtrunA17_Chr2g0301581 25.779 353 168 14 9 285 13 347 5.65e-15 74.7
Msa0361040 MtrunA17_Chr6g0450721 26.901 171 113 4 120 284 182 346 1.53e-14 73.6
Msa0361040 MtrunA17_Chr3g0104821 25.444 338 165 12 28 285 44 374 3.82e-14 72.8
Msa0361040 MtrunA17_Chr1g0160101 28.846 156 93 4 147 284 219 374 8.37e-14 71.6
Msa0361040 MtrunA17_Chr8g0347751 27.011 174 108 4 130 284 196 369 1.63e-13 70.9
Msa0361040 MtrunA17_Chr2g0301541 25.496 353 169 14 9 285 13 347 1.66e-13 70.5
Msa0361040 MtrunA17_Chr1g0159981 30.189 159 91 5 151 291 226 382 3.45e-13 69.7
Msa0361040 MtrunA17_Chr6g0450711 23.824 340 165 11 27 284 121 448 5.98e-13 69.3
Msa0361040 MtrunA17_Chr6g0450701 24.267 375 195 15 1 296 12 376 6.10e-13 68.9
Msa0361040 MtrunA17_Chr2g0283511 24.662 296 164 11 50 291 76 366 6.68e-13 68.9
Msa0361040 MtrunA17_Chr3g0093031 24.340 341 172 13 28 290 30 362 2.72e-12 67.0
Msa0361040 MtrunA17_Chr3g0112821 24.405 336 173 12 28 290 30 357 4.30e-12 66.2
Msa0361040 MtrunA17_Chr2g0301551 26.667 285 136 11 56 285 37 303 4.64e-12 65.9
Msa0361040 MtrunA17_Chr2g0301571 26.667 285 136 11 56 285 37 303 1.61e-11 64.3
Msa0361040 MtrunA17_Chr3g0104831 29.348 184 111 6 121 285 110 293 1.70e-11 64.3
Msa0361040 MtrunA17_Chr7g0273101 25.749 167 101 4 146 291 202 366 5.51e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0361040 AT5G55050.1 39.823 339 137 7 26 298 37 374 4.09e-67 215
Msa0361040 AT5G37690.2 30.968 310 152 5 29 282 28 331 3.34e-51 173
Msa0361040 AT5G37690.1 29.874 318 153 5 29 282 28 339 1.75e-49 169
Msa0361040 AT3G04290.1 28.846 364 186 7 7 304 9 365 6.43e-43 152
Msa0361040 AT3G50400.1 29.477 363 178 9 8 297 14 371 7.80e-43 152
Msa0361040 AT1G71691.2 27.083 336 173 7 26 297 53 380 6.58e-41 147
Msa0361040 AT5G08460.1 27.222 360 185 7 10 297 28 382 1.34e-40 146
Msa0361040 AT1G71250.1 28.363 342 173 6 25 299 38 374 2.35e-40 145
Msa0361040 AT1G29660.1 28.451 355 180 8 14 300 16 364 5.66e-40 144
Msa0361040 AT5G33370.1 29.118 340 169 6 28 301 30 363 4.72e-39 142
Msa0361040 AT2G23540.1 27.632 380 185 11 3 297 10 384 7.50e-37 136
Msa0361040 AT4G28780.1 28.024 339 172 7 28 300 31 363 1.27e-36 135
Msa0361040 AT1G74460.1 25.519 337 181 5 9 281 6 336 8.23e-36 133
Msa0361040 AT5G18430.1 26.685 371 191 9 2 300 1 362 1.04e-35 132
Msa0361040 AT4G10950.2 26.686 341 177 8 26 299 69 403 2.18e-35 132
Msa0361040 AT1G29670.1 27.500 360 185 9 11 300 10 363 4.25e-35 131
Msa0361040 AT5G15720.1 27.139 339 175 7 26 297 28 361 1.24e-34 130
Msa0361040 AT1G29670.2 27.500 360 185 9 11 300 78 431 1.39e-34 131
Msa0361040 AT4G10950.1 26.706 337 178 8 26 299 69 399 2.10e-34 130
Msa0361040 AT1G71691.1 25.448 279 159 4 61 297 8 279 2.87e-34 127
Msa0361040 AT1G33811.1 27.346 373 180 13 9 300 8 370 1.25e-33 127
Msa0361040 AT1G53920.1 28.135 327 159 9 26 284 46 364 2.51e-33 127
Msa0361040 AT1G20120.1 27.726 321 160 9 27 281 77 391 3.37e-33 127
Msa0361040 AT3G53100.1 27.874 348 178 9 1 281 1 342 6.27e-33 125
Msa0361040 AT5G22810.1 29.730 333 154 12 21 281 26 350 9.19e-33 125
Msa0361040 AT5G45670.1 25.656 343 194 5 1 282 1 343 2.25e-32 124
Msa0361040 AT1G53990.1 28.571 371 191 12 1 302 1 366 5.41e-32 123
Msa0361040 AT3G16370.1 29.940 334 159 11 15 281 19 344 1.14e-31 122
Msa0361040 AT4G18970.1 24.852 338 189 7 26 300 26 361 1.38e-31 122
Msa0361040 AT2G30310.1 30.769 312 146 12 27 272 33 340 2.48e-31 121
Msa0361040 AT1G75880.1 28.483 323 162 6 26 283 50 368 3.37e-31 121
Msa0361040 AT4G18970.2 24.852 338 189 7 26 300 26 361 3.77e-31 121
Msa0361040 AT1G75890.2 27.301 326 164 8 24 282 43 362 1.40e-30 119
Msa0361040 AT1G75890.3 27.744 328 160 7 24 282 72 391 1.64e-30 119
Msa0361040 AT1G20130.1 27.841 352 163 11 22 300 198 531 2.53e-30 120
Msa0361040 AT1G20130.2 27.841 352 163 11 22 300 178 511 4.22e-30 120
Msa0361040 AT5G45960.1 26.875 320 154 9 24 271 43 354 6.22e-30 117
Msa0361040 AT5G03820.1 27.035 344 174 9 7 281 13 348 9.53e-30 116
Msa0361040 AT1G75880.2 28.483 323 161 7 26 283 50 367 1.16e-29 117
Msa0361040 AT5G03820.2 27.035 344 174 9 7 281 41 376 2.32e-29 116
Msa0361040 AT2G04570.1 28.125 352 175 12 1 283 1 343 3.20e-29 115
Msa0361040 AT1G75890.1 27.003 337 164 7 24 282 43 375 3.82e-29 115
Msa0361040 AT1G75900.1 26.377 345 177 10 7 283 22 357 8.40e-29 114
Msa0361040 AT1G20132.1 27.160 324 166 10 24 282 57 375 1.23e-28 114
Msa0361040 AT5G42170.1 28.213 319 160 11 26 281 48 360 2.94e-28 112
Msa0361040 AT1G71120.1 26.586 331 180 8 26 297 29 355 5.88e-28 112
Msa0361040 AT5G40990.1 25.507 345 179 7 28 301 37 374 7.45e-28 112
Msa0361040 AT2G40250.1 26.087 322 162 6 26 277 34 349 2.75e-27 110
Msa0361040 AT5G15720.3 26.132 287 160 5 58 297 49 330 4.85e-27 108
Msa0361040 AT2G31540.1 27.795 331 164 13 27 287 34 359 1.17e-26 108
Msa0361040 AT5G41890.1 25.824 364 186 10 12 297 15 372 3.97e-26 107
Msa0361040 AT1G53940.2 27.536 345 172 11 28 301 39 376 4.81e-26 107
Msa0361040 AT3G14225.1 23.988 346 185 8 28 300 37 377 5.39e-26 107
Msa0361040 AT1G06990.1 25.150 334 171 11 14 277 23 347 6.15e-26 106
Msa0361040 AT2G30220.1 27.129 317 157 11 27 275 32 342 6.89e-26 106
Msa0361040 AT1G75920.2 26.901 342 158 10 12 281 13 334 6.91e-26 105
Msa0361040 AT3G14225.2 24.419 344 182 8 28 300 37 373 8.70e-26 106
Msa0361040 AT5G03810.1 27.160 324 161 11 26 281 28 344 1.07e-25 105
Msa0361040 AT2G42990.1 26.364 330 167 11 21 282 21 342 1.21e-25 105
Msa0361040 AT2G24560.1 26.433 314 159 11 27 273 33 341 6.48e-25 103
Msa0361040 AT5G45950.1 25.625 320 166 10 24 280 36 346 1.14e-24 102
Msa0361040 AT4G26790.1 23.839 323 174 7 25 281 26 342 1.55e-24 102
Msa0361040 AT4G26790.2 23.839 323 174 7 25 281 26 342 1.55e-24 102
Msa0361040 AT1G58430.1 24.194 310 171 6 27 273 34 342 1.64e-24 102
Msa0361040 AT1G75910.1 28.406 345 154 14 9 281 11 334 5.14e-24 100
Msa0361040 AT2G31550.1 35.664 143 87 3 144 281 67 209 5.43e-24 98.2
Msa0361040 AT3G14820.1 24.713 348 187 11 2 281 1 341 6.20e-24 100
Msa0361040 AT1G75920.1 25.770 357 158 11 12 281 8 344 1.04e-23 100
Msa0361040 AT1G20135.1 25.484 310 161 8 28 278 29 327 1.85e-22 96.3
Msa0361040 AT1G75920.3 25.868 317 162 9 12 281 13 303 2.99e-22 95.5
Msa0361040 AT1G54030.1 25.079 315 185 11 29 298 53 361 3.73e-22 96.7
Msa0361040 AT1G59406.1 29.480 346 163 17 11 283 5 342 3.76e-22 95.9
Msa0361040 AT1G59030.1 29.480 346 163 17 11 283 5 342 3.76e-22 95.9
Msa0361040 AT1G58725.1 29.480 346 163 17 11 283 5 342 3.76e-22 95.9
Msa0361040 AT4G16233.1 32.812 128 85 1 176 302 5 132 4.61e-22 90.5
Msa0361040 AT2G19060.1 24.926 337 175 14 21 294 23 344 7.90e-22 94.7
Msa0361040 AT4G30140.1 25.223 337 178 12 22 299 27 348 1.77e-21 94.0
Msa0361040 AT2G03980.2 28.296 311 149 11 27 271 42 344 1.08e-20 92.0
Msa0361040 AT2G03980.3 28.296 311 149 11 27 271 42 344 1.08e-20 92.0
Msa0361040 AT2G03980.1 28.296 311 149 11 27 271 42 344 1.08e-20 92.0
Msa0361040 AT2G03980.4 28.296 311 149 11 27 271 42 344 1.08e-20 92.0
Msa0361040 AT1G54000.1 25.305 328 182 10 26 297 34 354 1.67e-20 91.7
Msa0361040 AT5G63170.1 26.023 342 151 16 4 271 6 319 4.68e-20 89.7
Msa0361040 AT1G75930.1 24.316 329 175 10 12 277 13 330 8.64e-20 89.0
Msa0361040 AT1G58520.3 27.245 323 155 13 26 283 28 335 1.06e-19 89.0
Msa0361040 AT1G58525.1 27.245 323 155 13 26 283 28 335 1.06e-19 89.0
Msa0361040 AT1G54010.1 24.355 349 198 12 8 298 15 355 4.55e-19 87.4
Msa0361040 AT3G14220.1 23.684 342 206 12 9 298 13 351 6.53e-19 86.7
Msa0361040 AT1G75920.4 27.160 243 117 7 86 281 77 306 1.09e-18 85.5
Msa0361040 AT2G19010.2 21.574 343 179 11 23 297 55 375 3.50e-18 84.7
Msa0361040 AT3G48460.1 23.894 339 173 12 29 291 39 368 3.97e-18 84.7
Msa0361040 AT2G19010.1 21.515 330 171 10 23 284 25 334 4.50e-18 84.3
Msa0361040 AT1G73610.1 24.556 338 166 13 3 271 8 325 1.30e-17 82.8
Msa0361040 AT1G56670.1 30.337 178 97 5 146 312 209 370 2.49e-16 79.3
Msa0361040 AT5G14450.1 23.324 343 169 12 27 284 40 373 3.60e-16 79.0
Msa0361040 AT1G23500.1 28.169 142 88 3 147 284 208 339 9.44e-16 77.4
Msa0361040 AT1G54020.2 22.781 338 187 11 21 298 24 347 1.27e-15 77.4
Msa0361040 AT5G33370.2 25.843 267 126 6 28 228 30 290 2.13e-15 76.3
Msa0361040 AT3G27950.1 23.184 358 183 13 11 284 8 357 7.33e-15 75.1
Msa0361040 AT3G62280.1 29.630 162 99 5 131 279 188 347 1.52e-14 73.9
Msa0361040 AT1G28650.1 25.464 377 183 15 1 291 7 371 2.38e-14 73.6
Msa0361040 AT4G16230.1 27.193 228 95 7 21 182 23 245 4.85e-14 71.2
Msa0361040 AT1G54790.3 23.706 367 187 15 8 291 13 369 4.88e-14 72.8
Msa0361040 AT1G09390.1 28.090 178 99 6 147 312 207 367 6.35e-14 72.4
Msa0361040 AT4G01130.3 26.425 193 116 4 122 288 93 285 7.92e-14 71.2
Msa0361040 AT3G14210.1 24.419 344 177 14 23 298 29 357 1.13e-13 71.6
Msa0361040 AT1G54020.4 24.444 180 130 3 123 298 35 212 1.19e-13 70.1
Msa0361040 AT4G01130.1 26.425 193 116 4 122 288 179 371 1.51e-13 71.2
Msa0361040 AT1G54020.1 24.444 180 130 3 123 298 84 261 1.83e-13 70.1
Msa0361040 AT1G54020.5 24.444 180 130 3 123 298 84 261 1.83e-13 70.1
Msa0361040 AT1G54020.3 24.444 180 130 3 123 298 84 261 1.83e-13 70.1
Msa0361040 AT1G28610.2 25.926 351 168 14 22 291 25 364 3.03e-13 70.5
Msa0361040 AT2G27360.1 23.978 367 175 14 9 285 12 364 3.37e-13 70.1
Msa0361040 AT3G14210.2 27.419 186 122 6 123 298 47 229 1.88e-12 67.0
Msa0361040 AT1G54790.1 23.035 369 190 15 8 291 9 368 2.36e-12 67.8
Msa0361040 AT3G05180.1 26.250 160 97 4 146 284 209 368 4.09e-12 67.0

Find 58 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGCACTTACATAATT+TGG 0.117449 3_1:+51200003 None:intergenic
AAACCTTCACTCCATGTTAA+AGG 0.251588 3_1:-51198578 Msa0361040:CDS
GGTGGTGCTGGAATATTTAA+AGG 0.285187 3_1:-51200033 Msa0361040:CDS
GTATTTAACAGACAATAAAT+TGG 0.298582 3_1:+51198606 None:intergenic
TCTTTCTTCATCTTAAGTTT+AGG 0.311509 3_1:-51200928 Msa0361040:CDS
ATAGACAAGACCATATCTTT+TGG 0.336790 3_1:-51198286 Msa0361040:CDS
GTTCCTGCTGTTTATGTGTT+TGG 0.346997 3_1:-51200886 Msa0361040:CDS
AACTTTGCCTCTGGTGGTGC+TGG 0.348127 3_1:-51200045 Msa0361040:CDS
GCTTCATATTAAGAAATTGA+TGG 0.374726 3_1:+51197950 None:intergenic
ATTGCTGGCGTGGCCGCAAT+TGG 0.383457 3_1:-51198679 Msa0361040:CDS
AAAGATATGGTCTTGTCTAT+TGG 0.388766 3_1:+51198289 None:intergenic
AGTAGCTCTTTCATACTAAC+AGG 0.395222 3_1:+51198185 None:intergenic
CCTCTCTCTAGCATCTTCTA+AGG 0.401608 3_1:-51200103 Msa0361040:CDS
GAAGAATCGACAAAGCAAAT+AGG 0.417938 3_1:-51199187 Msa0361040:CDS
GGAAACAATGATTACTTGAA+TGG 0.427461 3_1:-51200844 Msa0361040:CDS
CATGTTAAAGGAATGGCAAT+TGG 0.427882 3_1:-51198566 Msa0361040:CDS
ATTGTCGATAGACTTTATAA+TGG 0.436718 3_1:-51198227 Msa0361040:CDS
AGGATTCTTAGAAGCTCAAA+AGG 0.440544 3_1:-51200908 Msa0361040:CDS
TTGGATTCTGAATGAGGTCT+TGG 0.448841 3_1:+51198497 None:intergenic
GCAAGGAGATTCGAGATTGC+TGG 0.450012 3_1:-51198694 Msa0361040:CDS
GGACTGAATCCCAAAAGATA+TGG 0.451724 3_1:+51198276 None:intergenic
AAAGCTGCATGTTGTGGAAT+TGG 0.456571 3_1:-51198359 Msa0361040:CDS
AGTGGTGTTAACTTTGCCTC+TGG 0.462882 3_1:-51200054 Msa0361040:CDS
GTGATAATACCATGAGAAGT+TGG 0.473996 3_1:+51198478 None:intergenic
GAAGAAAGAGATAAAGAGAA+AGG 0.475686 3_1:+51200942 None:intergenic
CAATTGCCATTCCTTTAACA+TGG 0.483611 3_1:+51198567 None:intergenic
GGAAAATCAATACCATAGTA+AGG 0.489381 3_1:+51200799 None:intergenic
GCCAATCACAACAAAGAAGA+TGG 0.499649 3_1:+51199132 None:intergenic
GGTGTTAACTTTGCCTCTGG+TGG 0.510704 3_1:-51200051 Msa0361040:CDS
GATGCTAGAGAGAGGTAAGG+TGG 0.515570 3_1:+51200111 None:intergenic
GGTGACTCACTTGTTGATGT+TGG 0.515859 3_1:-51200865 Msa0361040:CDS
ATTCAGAATCCAACTTCTCA+TGG 0.531711 3_1:-51198487 Msa0361040:intron
TTGGATGTTGTCCTACATTG+AGG 0.531813 3_1:-51198660 Msa0361040:CDS
GAAGATGCTAGAGAGAGGTA+AGG 0.534481 3_1:+51200108 None:intergenic
TTGTTCTTAAGCCTCAATGT+AGG 0.542501 3_1:+51198649 None:intergenic
ATGTTTGCACTTGGTAAACA+TGG 0.553043 3_1:+51198317 None:intergenic
AAAGTTAACACCACTCAAGA+AGG 0.556148 3_1:+51200062 None:intergenic
AATACATTTAACAAAGCAAG+TGG 0.559176 3_1:-51199230 Msa0361040:CDS
TTGGTACAAATGTTTGCACT+TGG 0.559430 3_1:+51198308 None:intergenic
GAGAAGTTGGATTCTGAATG+AGG 0.559748 3_1:+51198491 None:intergenic
TTCACTCCATGTTAAAGGAA+TGG 0.568239 3_1:-51198573 Msa0361040:CDS
AGAGAGGTAAGGTGGTGAAG+TGG 0.570579 3_1:+51200119 None:intergenic
GAGATTCGAGATTGCTGGCG+TGG 0.572558 3_1:-51198689 Msa0361040:CDS
ATTCCTTTAACATGGAGTGA+AGG 0.588758 3_1:+51198575 None:intergenic
GGTAAGGTGGTGAAGTGGCA+AGG 0.594069 3_1:+51200124 None:intergenic
ATGCGAGTTACTGCCTCAGT+AGG 0.597608 3_1:+51198251 None:intergenic
TCACCAAACACATAAACAGC+AGG 0.599187 3_1:+51200883 None:intergenic
CCTTAGAAGATGCTAGAGAG+AGG 0.626625 3_1:+51200103 None:intergenic
GAGTTACTGCCTCAGTAGGA+TGG 0.632248 3_1:+51198255 None:intergenic
ATTCTGAATGAGGTCTTGGA+TGG 0.637285 3_1:+51198501 None:intergenic
AAGAATGTATCCTTCTTGAG+TGG 0.641923 3_1:-51200072 Msa0361040:CDS
GATGTGAAAGCTGCATGTTG+TGG 0.645421 3_1:-51198365 Msa0361040:CDS
AAATATTCCAGCACCACCAG+AGG 0.649840 3_1:+51200038 None:intergenic
ACAGGAGATGTGTATTGTGA+TGG 0.654472 3_1:+51198203 None:intergenic
CAAAGAAGATGGATTCTGAG+AGG 0.677477 3_1:+51199143 None:intergenic
GGATTCAGTCCATCCTACTG+AGG 0.681661 3_1:-51198264 Msa0361040:CDS
TGTAGGACAACATCCAATTG+CGG 0.688008 3_1:+51198666 None:intergenic
GAATTACCAAGAGAAAAGTG+TGG 0.722332 3_1:-51198060 Msa0361040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATTAAATAAGTTTAT+TGG - chr3_1:51200454-51200473 Msa0361040:intron 10.0%
!! AATAAAATGAAAAATGTAAA+GGG + chr3_1:51200760-51200779 None:intergenic 10.0%
!!! ATTTTTTTTAGCAACATTTT+TGG - chr3_1:51198410-51198429 Msa0361040:intron 15.0%
!! TCATTATTAATATTAACTTC+TGG + chr3_1:51198682-51198701 None:intergenic 15.0%
!!! ATTGATTTAATGCAAAAATT+AGG + chr3_1:51198723-51198742 None:intergenic 15.0%
!! TAATATCTTTGTTAAAAGTT+CGG + chr3_1:51199314-51199333 None:intergenic 15.0%
!! TTTCCAAATAAAATATACAA+TGG - chr3_1:51199341-51199360 Msa0361040:intron 15.0%
!!! TATTTTTTTCTATTTTTTGC+AGG - chr3_1:51200496-51200515 Msa0361040:intron 15.0%
!! CAATAAAATGAAAAATGTAA+AGG + chr3_1:51200761-51200780 None:intergenic 15.0%
!!! CAACCATTGTATATTTTATT+TGG + chr3_1:51199347-51199366 None:intergenic 20.0%
!! TAACAACTATTACTACATTT+GGG + chr3_1:51199571-51199590 None:intergenic 20.0%
!! ATAACAACTATTACTACATT+TGG + chr3_1:51199572-51199591 None:intergenic 20.0%
!!! TTTAATCACTTTGACTTTAA+GGG + chr3_1:51199595-51199614 None:intergenic 20.0%
!! GTATTTAACAGACAATAAAT+TGG + chr3_1:51200288-51200307 None:intergenic 20.0%
!!! TTTCATTTTATTGAGTTTGT+TGG - chr3_1:51200768-51200787 Msa0361040:intron 20.0%
! TCTTTCTTCATCTTAAGTTT+AGG - chr3_1:51197963-51197982 Msa0361040:three_prime_UTR 25.0%
!!! AAAGCTATTTTACCTTACTA+TGG - chr3_1:51198080-51198099 Msa0361040:exon 25.0%
! AACAGTAATTTGAGAACATA+TGG + chr3_1:51198367-51198386 None:intergenic 25.0%
!! GTTTTATCAAATATCTTCCT+TGG - chr3_1:51198384-51198403 Msa0361040:intron 25.0%
! TTGCTAAAAAAAATTGTCCA+AGG + chr3_1:51198404-51198423 None:intergenic 25.0%
! ATGTTATGTGAGAAAGAAAA+AGG - chr3_1:51198600-51198619 Msa0361040:CDS 25.0%
!!! AATGTGACACATAGTTTTTT+TGG + chr3_1:51199139-51199158 None:intergenic 25.0%
! TAAAATGACCCAATTATATC+TGG - chr3_1:51199389-51199408 Msa0361040:intron 25.0%
! AAAATGACCCAATTATATCT+GGG - chr3_1:51199390-51199409 Msa0361040:intron 25.0%
!! CTTTAATCACTTTGACTTTA+AGG + chr3_1:51199596-51199615 None:intergenic 25.0%
! AATACATTTAACAAAGCAAG+TGG - chr3_1:51199661-51199680 Msa0361040:intron 25.0%
! TCACAGAGATTATACAAAAA+TGG - chr3_1:51200173-51200192 Msa0361040:intron 25.0%
! ATTGTCGATAGACTTTATAA+TGG - chr3_1:51200664-51200683 Msa0361040:intron 25.0%
! GCTTCATATTAAGAAATTGA+TGG + chr3_1:51200944-51200963 None:intergenic 25.0%
GAAGAAAGAGATAAAGAGAA+AGG + chr3_1:51197952-51197971 None:intergenic 30.0%
GGAAACAATGATTACTTGAA+TGG - chr3_1:51198047-51198066 Msa0361040:three_prime_UTR 30.0%
! AGGTAAAATAGCTTTTGCAA+AGG + chr3_1:51198075-51198094 None:intergenic 30.0%
GGAAAATCAATACCATAGTA+AGG + chr3_1:51198095-51198114 None:intergenic 30.0%
! ACTGTTTTCATACACTATCT+TGG - chr3_1:51198289-51198308 Msa0361040:CDS 30.0%
GAAAAACATTGCAGAAAACA+AGG + chr3_1:51198442-51198461 None:intergenic 30.0%
! TTTCTGCAATGTTTTTCTCA+TGG - chr3_1:51198445-51198464 Msa0361040:intron 30.0%
GGAAGAAAACTCATGTTTAT+TGG - chr3_1:51198466-51198485 Msa0361040:intron 30.0%
TATGTGAGAAAGAAAAAGGT+AGG - chr3_1:51198604-51198623 Msa0361040:CDS 30.0%
ATTGTTACAGCTGAAAAAGT+AGG - chr3_1:51198744-51198763 Msa0361040:intron 30.0%
AGAACTGCACTTACATAATT+TGG + chr3_1:51198891-51198910 None:intergenic 30.0%
TACAAACACAAAAGCAAAGT+TGG + chr3_1:51198938-51198957 None:intergenic 30.0%
TTGTGTTTGTACGATAAACA+TGG - chr3_1:51198947-51198966 Msa0361040:intron 30.0%
TGTGTTTGTACGATAAACAT+GGG - chr3_1:51198948-51198967 Msa0361040:intron 30.0%
! TAGACCACAAAATTGCATTT+TGG + chr3_1:51198976-51198995 None:intergenic 30.0%
! TTTTGTGGTCTATTTCAACA+TGG - chr3_1:51198984-51199003 Msa0361040:intron 30.0%
TATTTCAACATGGCCAAAAA+GGG - chr3_1:51198994-51199013 Msa0361040:intron 30.0%
AAAAACTATGTGTCACATTG+TGG - chr3_1:51199140-51199159 Msa0361040:intron 30.0%
!!! TATGGGTTGTTTTTTCAGTT+TGG + chr3_1:51199270-51199289 None:intergenic 30.0%
ACTGAAAAAACAACCCATAT+CGG - chr3_1:51199271-51199290 Msa0361040:intron 30.0%
TTTAACTGGACCAAAATTGA+CGG - chr3_1:51199446-51199465 Msa0361040:intron 30.0%
!! ACTTTCATTTTTGTCTCAAG+TGG + chr3_1:51199508-51199527 None:intergenic 30.0%
GAATAAAAATTTCTCCCAAC+TGG - chr3_1:51199615-51199634 Msa0361040:intron 30.0%
TACAAAAAATGTCACCAGTT+GGG + chr3_1:51199632-51199651 None:intergenic 30.0%
CTTTGATTACTTCAATTCGA+AGG - chr3_1:51199793-51199812 Msa0361040:intron 30.0%
!! TGAGCATAGTTCTAAATATG+CGG + chr3_1:51200083-51200102 None:intergenic 30.0%
! TATGTGCATGCATTTTCATT+TGG - chr3_1:51200136-51200155 Msa0361040:CDS 30.0%
GATTATACAAAAATGGTGCA+AGG - chr3_1:51200180-51200199 Msa0361040:intron 30.0%
!! AAAGATATGGTCTTGTCTAT+TGG + chr3_1:51200605-51200624 None:intergenic 30.0%
! ATAGACAAGACCATATCTTT+TGG - chr3_1:51200605-51200624 Msa0361040:intron 30.0%
! TAGACAAGACCATATCTTTT+GGG - chr3_1:51200606-51200625 Msa0361040:intron 30.0%
ATGAAAAATGTAAAGGGACT+AGG + chr3_1:51200754-51200773 None:intergenic 30.0%
AGGATTCTTAGAAGCTCAAA+AGG - chr3_1:51197983-51198002 Msa0361040:three_prime_UTR 35.0%
!! AAGAATGCTGCTGATTTGAT+TGG - chr3_1:51198149-51198168 Msa0361040:CDS 35.0%
TGAAAGAGAGACATCACAAT+TGG - chr3_1:51198506-51198525 Msa0361040:CDS 35.0%
AAGAATGTATCCTTCTTGAG+TGG - chr3_1:51198819-51198838 Msa0361040:intron 35.0%
AAAGTTAACACCACTCAAGA+AGG + chr3_1:51198832-51198851 None:intergenic 35.0%
GTGTTTGTACGATAAACATG+GGG - chr3_1:51198949-51198968 Msa0361040:intron 35.0%
CTATTTCAACATGGCCAAAA+AGG - chr3_1:51198993-51199012 Msa0361040:intron 35.0%
AACCACTTGTGTGATATTTG+TGG - chr3_1:51199017-51199036 Msa0361040:intron 35.0%
ACTTGTGTGATATTTGTGGT+GGG - chr3_1:51199021-51199040 Msa0361040:intron 35.0%
!!! TTGGGTCATTTTAACTCTCT+GGG + chr3_1:51199382-51199401 None:intergenic 35.0%
!!! ATTGGGTCATTTTAACTCTC+TGG + chr3_1:51199383-51199402 None:intergenic 35.0%
TTCGTAGCCCAGATATAATT+GGG + chr3_1:51199400-51199419 None:intergenic 35.0%
TTTCGTAGCCCAGATATAAT+TGG + chr3_1:51199401-51199420 None:intergenic 35.0%
GTTAAATCAGCTAGTTCGAT+TGG + chr3_1:51199432-51199451 None:intergenic 35.0%
! ATCGAACTAGCTGATTTAAC+TGG - chr3_1:51199432-51199451 Msa0361040:intron 35.0%
CTACAAAAAATGTCACCAGT+TGG + chr3_1:51199633-51199652 None:intergenic 35.0%
GAAGAATCGACAAAGCAAAT+AGG - chr3_1:51199704-51199723 Msa0361040:intron 35.0%
! TCCATCTTCTTTGTTGTGAT+TGG - chr3_1:51199758-51199777 Msa0361040:intron 35.0%
! GTCATTAAAAGTGCAACTAC+AGG - chr3_1:51199865-51199884 Msa0361040:intron 35.0%
ACTCTATATGTATACGAGCA+TGG - chr3_1:51199925-51199944 Msa0361040:intron 35.0%
!! ATGGTTCTAAATTGTGTCTG+TGG - chr3_1:51199944-51199963 Msa0361040:intron 35.0%
CACTACAAACCTTGATATTG+CGG - chr3_1:51199982-51200001 Msa0361040:intron 35.0%
! TTCATTTTGCCGCAATATCA+AGG + chr3_1:51199994-51200013 None:intergenic 35.0%
TTGATATTGCGGCAAAATGA+AGG - chr3_1:51199993-51200012 Msa0361040:intron 35.0%
! GCATGCATTTTCATTTGGTA+TGG - chr3_1:51200141-51200160 Msa0361040:intron 35.0%
TTGTTCTTAAGCCTCAATGT+AGG + chr3_1:51200245-51200264 None:intergenic 35.0%
AAACCTTCACTCCATGTTAA+AGG - chr3_1:51200313-51200332 Msa0361040:intron 35.0%
ATTCCTTTAACATGGAGTGA+AGG + chr3_1:51200319-51200338 None:intergenic 35.0%
TTCACTCCATGTTAAAGGAA+TGG - chr3_1:51200318-51200337 Msa0361040:intron 35.0%
CAATTGCCATTCCTTTAACA+TGG + chr3_1:51200327-51200346 None:intergenic 35.0%
CATGTTAAAGGAATGGCAAT+TGG - chr3_1:51200325-51200344 Msa0361040:intron 35.0%
ATTCAGAATCCAACTTCTCA+TGG - chr3_1:51200404-51200423 Msa0361040:intron 35.0%
GTGATAATACCATGAGAAGT+TGG + chr3_1:51200416-51200435 None:intergenic 35.0%
ATGTTTGCACTTGGTAAACA+TGG + chr3_1:51200577-51200596 None:intergenic 35.0%
TTGGTACAAATGTTTGCACT+TGG + chr3_1:51200586-51200605 None:intergenic 35.0%
AGTAGCTCTTTCATACTAAC+AGG + chr3_1:51200709-51200728 None:intergenic 35.0%
GAATTACCAAGAGAAAAGTG+TGG - chr3_1:51200831-51200850 Msa0361040:CDS 35.0%
! GTTCCTGCTGTTTATGTGTT+TGG - chr3_1:51198005-51198024 Msa0361040:three_prime_UTR 40.0%
TCACCAAACACATAAACAGC+AGG + chr3_1:51198011-51198030 None:intergenic 40.0%
TTTCCAACTAAGAAACCTGC+TGG - chr3_1:51198110-51198129 Msa0361040:CDS 40.0%
TTCCAACTAAGAAACCTGCT+GGG - chr3_1:51198111-51198130 Msa0361040:CDS 40.0%
GTCTCTCTTTCATGCTTTGT+GGG + chr3_1:51198498-51198517 None:intergenic 40.0%
TGTCTCTCTTTCATGCTTTG+TGG + chr3_1:51198499-51198518 None:intergenic 40.0%
AGATTGTGCAGTGCATTTCA+AGG - chr3_1:51198655-51198674 Msa0361040:CDS 40.0%
! GGTGGTGCTGGAATATTTAA+AGG - chr3_1:51198858-51198877 Msa0361040:intron 40.0%
! GGGTCCAAAATGCAATTTTG+TGG - chr3_1:51198969-51198988 Msa0361040:intron 40.0%
CACCACAAATATCACACAAG+TGG + chr3_1:51199022-51199041 None:intergenic 40.0%
CACTTGTGTGATATTTGTGG+TGG - chr3_1:51199020-51199039 Msa0361040:intron 40.0%
AAAAGCCACATGTCACATTG+CGG + chr3_1:51199069-51199088 None:intergenic 40.0%
ACTATGTGTCACATTGTGGT+TGG - chr3_1:51199144-51199163 Msa0361040:CDS 40.0%
! CAAAGAAGATGGATTCTGAG+AGG + chr3_1:51199751-51199770 None:intergenic 40.0%
GCCAATCACAACAAAGAAGA+TGG + chr3_1:51199762-51199781 None:intergenic 40.0%
TGGATTCGACAAACTGTTGT+GGG + chr3_1:51199838-51199857 None:intergenic 40.0%
ATGGATTCGACAAACTGTTG+TGG + chr3_1:51199839-51199858 None:intergenic 40.0%
ACAACAGTTTGTCGAATCCA+TGG - chr3_1:51199838-51199857 Msa0361040:intron 40.0%
! CACTTTTAATGACGAAGCCA+TGG + chr3_1:51199858-51199877 None:intergenic 40.0%
GCAACTACAGGTAAACACAA+TGG - chr3_1:51199877-51199896 Msa0361040:intron 40.0%
TGTAGGACAACATCCAATTG+CGG + chr3_1:51200228-51200247 None:intergenic 40.0%
TTGGATGTTGTCCTACATTG+AGG - chr3_1:51200231-51200250 Msa0361040:intron 40.0%
ATTCTGAATGAGGTCTTGGA+TGG + chr3_1:51200393-51200412 None:intergenic 40.0%
TTGGATTCTGAATGAGGTCT+TGG + chr3_1:51200397-51200416 None:intergenic 40.0%
GAGAAGTTGGATTCTGAATG+AGG + chr3_1:51200403-51200422 None:intergenic 40.0%
AAAGCTGCATGTTGTGGAAT+TGG - chr3_1:51200532-51200551 Msa0361040:intron 40.0%
GGACTGAATCCCAAAAGATA+TGG + chr3_1:51200618-51200637 None:intergenic 40.0%
ACAGGAGATGTGTATTGTGA+TGG + chr3_1:51200691-51200710 None:intergenic 40.0%
! GGTGACTCACTTGTTGATGT+TGG - chr3_1:51198026-51198045 Msa0361040:three_prime_UTR 45.0%
GAAGATGCTAGAGAGAGGTA+AGG + chr3_1:51198786-51198805 None:intergenic 45.0%
CCTTAGAAGATGCTAGAGAG+AGG + chr3_1:51198791-51198810 None:intergenic 45.0%
CCTCTCTCTAGCATCTTCTA+AGG - chr3_1:51198788-51198807 Msa0361040:intron 45.0%
! AGTGGTGTTAACTTTGCCTC+TGG - chr3_1:51198837-51198856 Msa0361040:intron 45.0%
AAATATTCCAGCACCACCAG+AGG + chr3_1:51198856-51198875 None:intergenic 45.0%
! CACACAAGTGGTTCCCTTTT+TGG + chr3_1:51199010-51199029 None:intergenic 45.0%
CACTTGTGTGACATTGTGGT+GGG + chr3_1:51199188-51199207 None:intergenic 45.0%
GAACCACTTGTGTGACATTG+TGG + chr3_1:51199192-51199211 None:intergenic 45.0%
!!! TCCAATGCCTCACTTTTTGG+CGG + chr3_1:51199215-51199234 None:intergenic 45.0%
!! CAGTCCAATGCCTCACTTTT+TGG + chr3_1:51199218-51199237 None:intergenic 45.0%
ATCTGGGCTACGAAACATAC+CGG - chr3_1:51199406-51199425 Msa0361040:intron 45.0%
AATCAGCTAGTTCGATTGGC+CGG + chr3_1:51199428-51199447 None:intergenic 45.0%
GGATTCGACAAACTGTTGTG+GGG + chr3_1:51199837-51199856 None:intergenic 45.0%
GATGTGAAAGCTGCATGTTG+TGG - chr3_1:51200526-51200545 Msa0361040:intron 45.0%
! GTTGTGCCACACTTTTCTCT+TGG + chr3_1:51200840-51200859 None:intergenic 45.0%
CTCCCAGCAGGTTTCTTAGT+TGG + chr3_1:51198116-51198135 None:intergenic 50.0%
CAACTAAGAAACCTGCTGGG+AGG - chr3_1:51198114-51198133 Msa0361040:CDS 50.0%
AGAGAGGTAAGGTGGTGAAG+TGG + chr3_1:51198775-51198794 None:intergenic 50.0%
GATGCTAGAGAGAGGTAAGG+TGG + chr3_1:51198783-51198802 None:intergenic 50.0%
GGTGTTAACTTTGCCTCTGG+TGG - chr3_1:51198840-51198859 Msa0361040:intron 50.0%
CCACATGTCACATTGCGGTT+GGG + chr3_1:51199064-51199083 None:intergenic 50.0%
CCACTTGTGTGACATTGTGG+TGG + chr3_1:51199189-51199208 None:intergenic 50.0%
CCACCACAATGTCACACAAG+TGG - chr3_1:51199186-51199205 Msa0361040:CDS 50.0%
!!! CCAATGCCTCACTTTTTGGC+GGG + chr3_1:51199214-51199233 None:intergenic 50.0%
CAGTTTGGTCCACTGAACTG+CGG + chr3_1:51199255-51199274 None:intergenic 50.0%
GACTCAGTCTAGGCCGATAT+GGG + chr3_1:51199287-51199306 None:intergenic 50.0%
TGACTCAGTCTAGGCCGATA+TGG + chr3_1:51199288-51199307 None:intergenic 50.0%
GTTCGGACATGACTCAGTCT+AGG + chr3_1:51199297-51199316 None:intergenic 50.0%
GGACCAAAATTGACGGCTTG+CGG - chr3_1:51199453-51199472 Msa0361040:intron 50.0%
! TGTCCGCAAGCCGTCAATTT+TGG + chr3_1:51199459-51199478 None:intergenic 50.0%
GGCTTGCGGACAATGAAGTA+GGG - chr3_1:51199467-51199486 Msa0361040:intron 50.0%
CAACATCGCAGCTGCAATTG+AGG + chr3_1:51200028-51200047 None:intergenic 50.0%
TTGCAGCTGCGATGTTGTAG+CGG - chr3_1:51200031-51200050 Msa0361040:CDS 50.0%
GCAAGGAGATTCGAGATTGC+TGG - chr3_1:51200197-51200216 Msa0361040:intron 50.0%
GGATTCAGTCCATCCTACTG+AGG - chr3_1:51200627-51200646 Msa0361040:intron 50.0%
GAGTTACTGCCTCAGTAGGA+TGG + chr3_1:51200639-51200658 None:intergenic 50.0%
ATGCGAGTTACTGCCTCAGT+AGG + chr3_1:51200643-51200662 None:intergenic 50.0%
CCATTGCAAAACCTCCCAGC+AGG + chr3_1:51198128-51198147 None:intergenic 55.0%
! CCTGCTGGGAGGTTTTGCAA+TGG - chr3_1:51198125-51198144 Msa0361040:CDS 55.0%
GGTAAGGTGGTGAAGTGGCA+AGG + chr3_1:51198770-51198789 None:intergenic 55.0%
! AACTTTGCCTCTGGTGGTGC+TGG - chr3_1:51198846-51198865 Msa0361040:intron 55.0%
CCCAACCGCAATGTGACATG+TGG - chr3_1:51199061-51199080 Msa0361040:intron 55.0%
GCCACATGTCACATTGCGGT+TGG + chr3_1:51199065-51199084 None:intergenic 55.0%
GTGGTTCCCGCCAAAAAGTG+AGG - chr3_1:51199205-51199224 Msa0361040:CDS 55.0%
CCCGCCAAAAAGTGAGGCAT+TGG - chr3_1:51199211-51199230 Msa0361040:CDS 55.0%
TTTGGTCCACTGAACTGCGG+CGG + chr3_1:51199252-51199271 None:intergenic 55.0%
CGGCTTGCGGACAATGAAGT+AGG - chr3_1:51199466-51199485 Msa0361040:intron 55.0%
GAGATTCGAGATTGCTGGCG+TGG - chr3_1:51200202-51200221 Msa0361040:intron 55.0%
TTGGTCCACTGAACTGCGGC+GGG + chr3_1:51199251-51199270 None:intergenic 60.0%
ATTGCTGGCGTGGCCGCAAT+TGG - chr3_1:51200212-51200231 Msa0361040:intron 60.0%
CCACTGAACTGCGGCGGGTC+AGG + chr3_1:51199246-51199265 None:intergenic 70.0%
CCTGACCCGCCGCAGTTCAG+TGG - chr3_1:51199243-51199262 Msa0361040:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 51197930 51200983 51197930 ID=Msa0361040;Name=Msa0361040
chr3_1 mRNA 51197930 51200983 51197930 ID=Msa0361040-mRNA-1;Parent=Msa0361040;Name=Msa0361040-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.6|1|1|1|5|164|327
chr3_1 exon 51197930 51198395 51197930 ID=Msa0361040-mRNA-1:exon:9115;Parent=Msa0361040-mRNA-1
chr3_1 exon 51198488 51198734 51198488 ID=Msa0361040-mRNA-1:exon:9114;Parent=Msa0361040-mRNA-1
chr3_1 exon 51199141 51199260 51199141 ID=Msa0361040-mRNA-1:exon:9113;Parent=Msa0361040-mRNA-1
chr3_1 exon 51200017 51200159 51200017 ID=Msa0361040-mRNA-1:exon:9112;Parent=Msa0361040-mRNA-1
chr3_1 exon 51200812 51200983 51200812 ID=Msa0361040-mRNA-1:exon:9111;Parent=Msa0361040-mRNA-1
chr3_1 CDS 51200812 51200983 51200812 ID=Msa0361040-mRNA-1:cds;Parent=Msa0361040-mRNA-1
chr3_1 CDS 51200017 51200159 51200017 ID=Msa0361040-mRNA-1:cds;Parent=Msa0361040-mRNA-1
chr3_1 CDS 51199141 51199260 51199141 ID=Msa0361040-mRNA-1:cds;Parent=Msa0361040-mRNA-1
chr3_1 CDS 51198488 51198734 51198488 ID=Msa0361040-mRNA-1:cds;Parent=Msa0361040-mRNA-1
chr3_1 CDS 51198094 51198395 51198094 ID=Msa0361040-mRNA-1:cds;Parent=Msa0361040-mRNA-1
chr3_1 three_prime_UTR 51197930 51198093 51197930 ID=Msa0361040-mRNA-1:three_prime_utr;Parent=Msa0361040-mRNA-1
Gene Sequence

>Msa0361040

ATGATGAGATTGAGAACTTCCTTTCTCTTTATCTCTTTCTTCATCTTAAGTTTAGGATTCTTAGAAGCTCAAAAGGTTCCTGCTGTTTATGTGTTTGGTGACTCACTTGTTGATGTTGGAAACAATGATTACTTGAATGGTACCTTTGCAAAAGCTATTTTACCTTACTATGCTGAAAAAGTAGGCCTTGCCACTTCACCACCTTACCTCTCTCTAGCATCTTCTAAGGTAAAAAACAAGAATGTATCCTTCTTGAGTGGTGTTAACTTTGCCTCTGGTGGTGCTGGAATATTTAAAGGCACAGATCCAAATTATATACGATCAATACATTTAACAAAGCAAGTGGAGTACTATTCACAAATGTATGAAGAATCGACAAAGCAAATAGGAGTATCAACACTTCAGAAACACCTCTCAGAATCCATCTTCTTTGTTAGATTATACAAAAATGGTGCAAGGAGATTCGAGATTGCTGGCGTGGCCGCAATTGGATGTTGTCCTACATTGAGGCTTAAGAACAAAACAGAATGCTTCTCAGAAGCCAATTTATTGTCTGTTAAATACAATGAAAACCTTCACTCCATGTTAAAGGAATGGCAATTGGAGAGCAAGAACTTAAGTTACTCATACTTTGATACTTATGCTGCCATCCAAGACCTCATTCAGAATCCAACTTCTCATGGATTTGTAGATGTGAAAGCTGCATGTTGTGGAATTGGTGAACTGAATGCTGAACTTCCATGTTTACCAAGTGCAAACATTTGTACCAATAGACAAGACCATATCTTTTGGGATTCAGTCCATCCTACTGAGGCAGTAACTCGCATAATTGTCGATAGACTTTATAATGGACCATCACAATACACATCTCCTGTTAGTATGAAAGAGCTACTTCATGTATCAATTGCTAAATCACCTAGTCCCTTTACATTTTTCATTTTATTGAGTTTGTTGGTTACTTGTTATCAAACAAAAACAAATTAG

Protein sequence

>Msa0361040

MMRLRTSFLFISFFILSLGFLEAQKVPAVYVFGDSLVDVGNNDYLNGTFAKAILPYYAEKVGLATSPPYLSLASSKVKNKNVSFLSGVNFASGGAGIFKGTDPNYIRSIHLTKQVEYYSQMYEESTKQIGVSTLQKHLSESIFFVRLYKNGARRFEIAGVAAIGCCPTLRLKNKTECFSEANLLSVKYNENLHSMLKEWQLESKNLSYSYFDTYAAIQDLIQNPTSHGFVDVKAACCGIGELNAELPCLPSANICTNRQDHIFWDSVHPTEAVTRIIVDRLYNGPSQYTSPVSMKELLHVSIAKSPSPFTFFILLSLLVTCYQTKTN*