Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185330 | AES82522.1 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185330 | sp|Q8L4B2|NFYC9_ARATH | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.84e-87 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185330 | G7KYQ4 | 99.615 | 260 | 1 | 0 | 1 | 260 | 52 | 311 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0185330 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043960 | Msa0185330 | 0.802481 | 5.497098e-49 | -8.615850e-47 |
| Msa0044050 | Msa0185330 | 0.800798 | 1.217072e-48 | -8.615850e-47 |
| Msa0183800 | Msa0185330 | 0.809066 | 2.273221e-50 | -8.615850e-47 |
| Msa0185330 | Msa1083730 | 0.998524 | 1.180536e-267 | -8.615850e-47 |
| Msa0185330 | Msa1131190 | 0.920135 | 1.875797e-87 | -8.615850e-47 |
| Msa0185330 | Msa1381220 | 0.989666 | 4.113436e-179 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185330 | MtrunA17_Chr7g0272991 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 537 |
| Msa0185330 | MtrunA17_Chr1g0191681 | 83.539 | 243 | 36 | 1 | 1 | 243 | 1 | 239 | 3.62e-140 | 394 |
| Msa0185330 | MtrunA17_Chr2g0310741 | 55.785 | 242 | 92 | 7 | 12 | 247 | 15 | 247 | 9.87e-76 | 231 |
| Msa0185330 | MtrunA17_Chr3g0132191 | 66.038 | 159 | 39 | 4 | 83 | 238 | 37 | 183 | 1.24e-62 | 196 |
| Msa0185330 | MtrunA17_Chr2g0288481 | 49.468 | 188 | 70 | 8 | 82 | 259 | 66 | 238 | 6.82e-53 | 172 |
| Msa0185330 | MtrunA17_Chr2g0318881 | 59.770 | 87 | 34 | 1 | 100 | 185 | 21 | 107 | 1.64e-31 | 112 |
| Msa0185330 | MtrunA17_Chr2g0318921 | 61.446 | 83 | 31 | 1 | 100 | 181 | 21 | 103 | 6.70e-31 | 111 |
| Msa0185330 | MtrunA17_Chr8g0376351 | 61.333 | 75 | 28 | 1 | 119 | 192 | 1 | 75 | 2.16e-27 | 101 |
| Msa0185330 | MtrunA17_Chr3g0081161 | 39.744 | 78 | 47 | 0 | 102 | 179 | 9 | 86 | 7.89e-12 | 63.9 |
| Msa0185330 | MtrunA17_Chr8g0354151 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.47e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185330 | AT1G08970.3 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.92e-88 | 261 |
| Msa0185330 | AT1G08970.4 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.92e-88 | 261 |
| Msa0185330 | AT1G08970.2 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.92e-88 | 261 |
| Msa0185330 | AT1G08970.1 | 62.500 | 248 | 63 | 8 | 1 | 247 | 1 | 219 | 4.92e-88 | 261 |
| Msa0185330 | AT1G54830.2 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.92e-87 | 259 |
| Msa0185330 | AT1G54830.3 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.92e-87 | 259 |
| Msa0185330 | AT1G54830.1 | 63.636 | 242 | 56 | 5 | 16 | 256 | 5 | 215 | 2.92e-87 | 259 |
| Msa0185330 | AT3G48590.1 | 68.790 | 157 | 44 | 3 | 83 | 238 | 47 | 199 | 1.76e-70 | 216 |
| Msa0185330 | AT5G63470.2 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.07e-67 | 209 |
| Msa0185330 | AT5G63470.1 | 68.987 | 158 | 45 | 4 | 83 | 238 | 60 | 215 | 2.07e-67 | 209 |
| Msa0185330 | AT1G56170.1 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.35e-66 | 205 |
| Msa0185330 | AT1G56170.2 | 75.758 | 132 | 25 | 3 | 80 | 209 | 55 | 181 | 1.35e-66 | 205 |
| Msa0185330 | AT5G50480.1 | 49.123 | 171 | 63 | 5 | 79 | 248 | 35 | 182 | 2.74e-46 | 154 |
| Msa0185330 | AT5G27910.1 | 45.349 | 172 | 72 | 8 | 77 | 248 | 15 | 164 | 4.68e-39 | 134 |
| Msa0185330 | AT5G50490.1 | 38.889 | 180 | 96 | 4 | 70 | 249 | 8 | 173 | 1.71e-34 | 123 |
| Msa0185330 | AT5G50470.1 | 39.560 | 182 | 71 | 8 | 79 | 251 | 44 | 195 | 9.78e-31 | 114 |
| Msa0185330 | AT5G38140.1 | 43.269 | 104 | 55 | 2 | 76 | 178 | 44 | 144 | 1.41e-25 | 100 |
| Msa0185330 | AT3G12480.1 | 37.179 | 78 | 49 | 0 | 102 | 179 | 9 | 86 | 1.30e-11 | 63.9 |
Find 123 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTGGGTAAAATGTAATT+TGG | 0.125571 | 1_4:-75457956 | Msa0185330:three_prime_UTR |
| AAGCCAGCACTTCATCTTTC+AGG | 0.158704 | 1_4:+75458612 | None:intergenic |
| GTCATTTGGTTTGGCTGATA+TGG | 0.158964 | 1_4:+75459076 | None:intergenic |
| GACTGATATCTTTGATTTCC+TGG | 0.246183 | 1_4:-75458657 | Msa0185330:CDS |
| TAATTTGGGTTTAAACCTTA+TGG | 0.256597 | 1_4:-75457941 | Msa0185330:three_prime_UTR |
| TCAACCTGCTGGAGCTCAGC+TGG | 0.263146 | 1_4:-75459002 | Msa0185330:CDS |
| GCAGACTTCTATTGCCTATT+GGG | 0.267661 | 1_4:-75457886 | Msa0185330:three_prime_UTR |
| TGCAGACTTCTATTGCCTAT+TGG | 0.280582 | 1_4:-75457887 | Msa0185330:three_prime_UTR |
| ATCTTTATGTTTAATTAAGC+TGG | 0.286907 | 1_4:-75457972 | Msa0185330:three_prime_UTR |
| CTATTGGGTTATATTTACTA+TGG | 0.312585 | 1_4:-75457871 | Msa0185330:three_prime_UTR |
| GGGGCCCCAGTCATTTGGTT+TGG | 0.316348 | 1_4:+75459067 | None:intergenic |
| AGCTGGGTAAAATGTAATTT+GGG | 0.319298 | 1_4:-75457955 | Msa0185330:three_prime_UTR |
| TTTCCTGGCTTGCAGATTGC+AGG | 0.326598 | 1_4:-75458109 | Msa0185330:intron |
| GGAGATGGTGGTCGCTGTTC+CGG | 0.343092 | 1_4:+75458404 | None:intergenic |
| TAAAGGAATCATAGATTTGC+AGG | 0.344712 | 1_4:+75457812 | None:intergenic |
| GGCTGCTGAGCATACATGTT+TGG | 0.345011 | 1_4:+75458464 | None:intergenic |
| GCCTCCCAAGTTGGAACTGC+TGG | 0.356093 | 1_4:-75458515 | Msa0185330:CDS |
| ACATAAAGATAAGTTATTAC+TGG | 0.361320 | 1_4:+75457985 | None:intergenic |
| GATCCGTTGTTACATCAGTT+GGG | 0.366704 | 1_4:-75459042 | Msa0185330:CDS |
| ATCCTGGGGCCCCAGTCATT+TGG | 0.379289 | 1_4:+75459062 | None:intergenic |
| TCATTTGGTTTGGCTGATAT+GGG | 0.380613 | 1_4:+75459077 | None:intergenic |
| GGTTTAAACCTTATGGTCTT+CGG | 0.383720 | 1_4:-75457934 | Msa0185330:three_prime_UTR |
| ACTGATGTAACAACGGATCC+TGG | 0.389880 | 1_4:+75459046 | None:intergenic |
| TGGAACTGCTGGTGTCATAA+TGG | 0.411463 | 1_4:-75458504 | Msa0185330:CDS |
| CACAACCAGAATCCGCAAAT+GGG | 0.411828 | 1_4:-75459139 | Msa0185330:CDS |
| AGAGGAACAATGCCTGTTGC+TGG | 0.417994 | 1_4:-75458581 | Msa0185330:CDS |
| GGATCCGTTGTTACATCAGT+TGG | 0.426256 | 1_4:-75459043 | Msa0185330:CDS |
| CATAGTAAATATAACCCAAT+AGG | 0.426321 | 1_4:+75457872 | None:intergenic |
| AACAACAGCTGCAATCCTTC+TGG | 0.435091 | 1_4:-75458925 | Msa0185330:CDS |
| GCTGCTGAGCATACATGTTT+GGG | 0.435445 | 1_4:+75458465 | None:intergenic |
| CATCTCAGCATCTAGTGATC+TGG | 0.437549 | 1_4:+75458383 | None:intergenic |
| TCATGGTCTTCTACCCCATC+GGG | 0.441080 | 1_4:-75457778 | None:intergenic |
| AGATTGCAGGGAACTGCAAT+GGG | 0.446408 | 1_4:-75458096 | Msa0185330:three_prime_UTR |
| CAGTGTGGTTCCATGAGCGC+AGG | 0.449372 | 1_4:+75458735 | None:intergenic |
| ACAAATGTGGCCACAGCCTC+CGG | 0.450073 | 1_4:-75458423 | Msa0185330:CDS |
| GCACAACCAGAATCCGCAAA+TGG | 0.451270 | 1_4:-75459140 | Msa0185330:CDS |
| CAAGAACCACAGCCTTCCTC+TGG | 0.452736 | 1_4:-75458864 | Msa0185330:CDS |
| GCATCAGCAGGACCAGCAAC+AGG | 0.455014 | 1_4:+75458569 | None:intergenic |
| GTTGCTGCTGTTGCTGCTGA+TGG | 0.455992 | 1_4:+75458951 | None:intergenic |
| GGCCTGTGAGATGTTCATAT+TGG | 0.456864 | 1_4:-75458765 | Msa0185330:CDS |
| CCATGAGAGTTGACTGCTAA+AGG | 0.458260 | 1_4:+75457795 | None:intergenic |
| TGGAGTTAACCCTGCGCTCA+TGG | 0.458619 | 1_4:-75458745 | Msa0185330:CDS |
| CAGTCCACTGGTCAACCTGC+TGG | 0.464075 | 1_4:-75459013 | Msa0185330:CDS |
| CACATTTGTGGTGCCATGTA+GGG | 0.465255 | 1_4:+75458437 | None:intergenic |
| CTGATGTAACAACGGATCCT+GGG | 0.469388 | 1_4:+75459047 | None:intergenic |
| CTGGTACTGGTTTGACCAGA+AGG | 0.471679 | 1_4:+75458910 | None:intergenic |
| CAACCTGCTGGAGCTCAGCT+GGG | 0.476224 | 1_4:-75459001 | Msa0185330:CDS |
| ATGCTGAGATGTGGATGTTA+AGG | 0.476601 | 1_4:-75458371 | Msa0185330:intron |
| TGACACCAGCAGTTCCAACT+TGG | 0.478083 | 1_4:+75458510 | None:intergenic |
| GGAACTGCTGGTGTCATAAT+GGG | 0.479046 | 1_4:-75458503 | Msa0185330:CDS |
| TCTTTATGTTTAATTAAGCT+GGG | 0.482086 | 1_4:-75457971 | Msa0185330:three_prime_UTR |
| TTGTGGTGCCATGTAGGGAT+GGG | 0.484954 | 1_4:+75458442 | None:intergenic |
| AACCAAATGACTGGGGCCCC+AGG | 0.486456 | 1_4:-75459064 | Msa0185330:CDS |
| TTTGTGGTGCCATGTAGGGA+TGG | 0.486986 | 1_4:+75458441 | None:intergenic |
| GGAGGCTGTGGCCACATTTG+TGG | 0.486993 | 1_4:+75458425 | None:intergenic |
| GCAACAGGCATTGTTCCTCT+TGG | 0.487666 | 1_4:+75458584 | None:intergenic |
| TGGGTGTGAAACTGTTCCAT+TGG | 0.491473 | 1_4:-75458071 | Msa0185330:three_prime_UTR |
| ACCACACTGAAGAGAACAAA+AGG | 0.492883 | 1_4:-75458721 | Msa0185330:CDS |
| CCACATTTGTGGTGCCATGT+AGG | 0.497501 | 1_4:+75458436 | None:intergenic |
| TACATGTTTGGGTCCATCAC+AGG | 0.504424 | 1_4:+75458476 | None:intergenic |
| TATATCATCCGAAGACCATA+AGG | 0.504471 | 1_4:+75457926 | None:intergenic |
| TATCAGCCAAACCAAATGAC+TGG | 0.504884 | 1_4:-75459073 | Msa0185330:CDS |
| CCTCAGCATGCCTCCCAAGT+TGG | 0.514710 | 1_4:-75458524 | Msa0185330:CDS |
| TCTTGATCCTTGCCAGAGGA+AGG | 0.515769 | 1_4:+75458852 | None:intergenic |
| GTTGCTGCTGATGGATATGC+TGG | 0.517658 | 1_4:+75458960 | None:intergenic |
| TGACCCAGCTGAGCTCCAGC+AGG | 0.517937 | 1_4:+75458998 | None:intergenic |
| CCAGTACCAGGAAATTGAAA+AGG | 0.518655 | 1_4:-75458897 | Msa0185330:CDS |
| CTTCTGGTCAAACCAGTACC+AGG | 0.521956 | 1_4:-75458909 | Msa0185330:CDS |
| TTCCTGGCTTGCAGATTGCA+GGG | 0.525676 | 1_4:-75458108 | Msa0185330:intron |
| CCTTTAGCAGTCAACTCTCA+TGG | 0.529370 | 1_4:-75457795 | Msa0185330:three_prime_UTR |
| CAGATTGCAGGGAACTGCAA+TGG | 0.530413 | 1_4:-75458097 | Msa0185330:three_prime_UTR |
| ATCCGTTGTTACATCAGTTG+GGG | 0.531831 | 1_4:-75459041 | Msa0185330:CDS |
| CTCATGGTCTTCTACCCCAT+CGG | 0.534855 | 1_4:-75457779 | None:intergenic |
| GGTCGCTGTTCCGGAGGCTG+TGG | 0.539229 | 1_4:+75458413 | None:intergenic |
| GGACCTGAAAGATGAAGTGC+TGG | 0.542953 | 1_4:-75458615 | Msa0185330:CDS |
| TGTGGTGCCATGTAGGGATG+GGG | 0.546062 | 1_4:+75458443 | None:intergenic |
| ACTTGGGAGGCATGCTGAGG+TGG | 0.548128 | 1_4:+75458527 | None:intergenic |
| ATCAGCCAAACCAAATGACT+GGG | 0.550264 | 1_4:-75459072 | Msa0185330:CDS |
| GACACCAGCAGTTCCAACTT+GGG | 0.552393 | 1_4:+75458511 | None:intergenic |
| AAGCACCTGTCATATTTGCA+AGG | 0.553287 | 1_4:-75458787 | Msa0185330:CDS |
| CAGTAAGGAAGAGCATCAGC+AGG | 0.560205 | 1_4:+75458557 | None:intergenic |
| CAGGCCCTTGCAAATATGAC+AGG | 0.560856 | 1_4:+75458782 | None:intergenic |
| TCAGCAGCCCCATCCCTACA+TGG | 0.562305 | 1_4:-75458450 | Msa0185330:CDS |
| ATCAGAAACTGTAGCTGAGA+TGG | 0.564284 | 1_4:-75458044 | Msa0185330:three_prime_UTR |
| TCCTTGCCAGAGGAAGGCTG+TGG | 0.564697 | 1_4:+75458858 | None:intergenic |
| GGAATCATAGATTTGCAGGC+AGG | 0.566600 | 1_4:+75457816 | None:intergenic |
| CAAAACAGAATGGATCATCA+AGG | 0.570283 | 1_4:-75459163 | Msa0185330:intron |
| AGCATCTAGTGATCTGGAGA+TGG | 0.574668 | 1_4:+75458389 | None:intergenic |
| ATATTGCTGCTGCAATCACT+AGG | 0.575052 | 1_4:-75458679 | Msa0185330:CDS |
| GAAGATCATGAAGGCTGATG+AGG | 0.575398 | 1_4:-75458831 | Msa0185330:CDS |
| TGAGGTGGCATGTAGCAGTA+AGG | 0.584291 | 1_4:+75458542 | None:intergenic |
| ACCACAGCCTTCCTCTGGCA+AGG | 0.585880 | 1_4:-75458859 | Msa0185330:CDS |
| ACAGTTTCTGATCGCACCAA+TGG | 0.588674 | 1_4:+75458055 | None:intergenic |
| AGCTCCAGCAGGTTGACCAG+TGG | 0.593284 | 1_4:+75459009 | None:intergenic |
| CATAATGGGAAAGCCTGTGA+TGG | 0.593370 | 1_4:-75458489 | Msa0185330:CDS |
| CACGAGGCACAATGTCAACC+AGG | 0.593690 | 1_4:+75458639 | None:intergenic |
| ACAACCAGAATCCGCAAATG+GGG | 0.594889 | 1_4:-75459138 | Msa0185330:CDS |
| ATTGCAGGGAACTGCAATGG+GGG | 0.605277 | 1_4:-75458094 | Msa0185330:three_prime_UTR |
| ATCTAGTGATCTGGAGATGG+TGG | 0.605869 | 1_4:+75458392 | None:intergenic |
| CTCCAATATGAACATCTCAC+AGG | 0.609517 | 1_4:+75458763 | None:intergenic |
| TGATATGGGTTAGATCCGTA+CGG | 0.617785 | 1_4:+75459091 | None:intergenic |
| AGCGGCAGTCAAATGCCGTA+CGG | 0.619913 | 1_4:-75459106 | Msa0185330:CDS |
| TGATGTAACAACGGATCCTG+GGG | 0.620797 | 1_4:+75459048 | None:intergenic |
| AGCACCTGTCATATTTGCAA+GGG | 0.622434 | 1_4:-75458786 | Msa0185330:CDS |
| ATCTTCTTGATCCTTGCCAG+AGG | 0.624577 | 1_4:+75458848 | None:intergenic |
| AAAACAGAATGGATCATCAA+GGG | 0.625548 | 1_4:-75459162 | Msa0185330:intron |
| ACCAGCAGTTCCAACTTGGG+AGG | 0.637100 | 1_4:+75458514 | None:intergenic |
| AGTGTGGTTCCATGAGCGCA+GGG | 0.637592 | 1_4:+75458736 | None:intergenic |
| GATCACTAGATGCTGAGATG+TGG | 0.638929 | 1_4:-75458380 | Msa0185330:exon |
| CCTACATGGCACCACAAATG+TGG | 0.644640 | 1_4:-75458436 | Msa0185330:CDS |
| GATGGTGGTCGCTGTTCCGG+AGG | 0.649506 | 1_4:+75458407 | None:intergenic |
| CCAACTTGGGAGGCATGCTG+AGG | 0.657795 | 1_4:+75458524 | None:intergenic |
| ATTCCTTCTATTCCCCGATG+GGG | 0.660173 | 1_4:+75457765 | None:intergenic |
| TCATCTTTCAGGTCCTCACG+AGG | 0.665344 | 1_4:+75458623 | None:intergenic |
| AAGGATCAAGAAGATCATGA+AGG | 0.667741 | 1_4:-75458840 | Msa0185330:CDS |
| TCCGTTGTTACATCAGTTGG+GGG | 0.670764 | 1_4:-75459040 | Msa0185330:CDS |
| GGTTGACATTGTGCCTCGTG+AGG | 0.672349 | 1_4:-75458636 | Msa0185330:CDS |
| CAACCAGAATCCGCAAATGG+GGG | 0.676007 | 1_4:-75459137 | Msa0185330:CDS |
| ACACTGAAGAGAACAAAAGG+AGG | 0.682027 | 1_4:-75458718 | Msa0185330:CDS |
| GATTGCAGGGAACTGCAATG+GGG | 0.700328 | 1_4:-75458095 | Msa0185330:three_prime_UTR |
| CATGGTCTTCTACCCCATCG+GGG | 0.703842 | 1_4:-75457777 | None:intergenic |
| GTGCTGGCTTCAATTCCAAG+AGG | 0.714242 | 1_4:-75458599 | Msa0185330:CDS |
| TCAGCCAAACCAAATGACTG+GGG | 0.740826 | 1_4:-75459071 | Msa0185330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTATTGTTTTTCTTTTT+TGG | - | chr1_4:75458312-75458331 | Msa0185330:intron | 15.0% |
| !! | CAAAAAAAAAACATCAAAAA+AGG | + | chr1_4:75458444-75458463 | None:intergenic | 15.0% |
| !!! | TGTAAATTGAAAACTTATTT+TGG | - | chr1_4:75458633-75458652 | Msa0185330:CDS | 15.0% |
| !!! | TTTCATTTTCAAAGAAAAGA+AGG | - | chr1_4:75457857-75457876 | Msa0185330:three_prime_UTR | 20.0% |
| !! | AAGAAGAGAAAAAAAGTTTA+GGG | + | chr1_4:75457961-75457980 | None:intergenic | 20.0% |
| !! | AAAGAAGAGAAAAAAAGTTT+AGG | + | chr1_4:75457962-75457981 | None:intergenic | 20.0% |
| !!! | TAAACTTTTTTTCTCTTCTT+TGG | - | chr1_4:75457961-75457980 | Msa0185330:three_prime_UTR | 20.0% |
| !!! | AAACTTTTTTTCTCTTCTTT+GGG | - | chr1_4:75457962-75457981 | Msa0185330:three_prime_UTR | 20.0% |
| !! | ATACAGAAAAAAAAATGAAC+TGG | + | chr1_4:75458184-75458203 | None:intergenic | 20.0% |
| !! | TCAACAGAACAAAAATTATT+CGG | + | chr1_4:75458519-75458538 | None:intergenic | 20.0% |
| !!! | AAACTTATTTTGGTATTCTA+AGG | - | chr1_4:75458643-75458662 | Msa0185330:CDS | 20.0% |
| !!! | AACTTATTTTGGTATTCTAA+GGG | - | chr1_4:75458644-75458663 | Msa0185330:CDS | 20.0% |
| !! | CTAATAAAATAGCATACAAA+AGG | + | chr1_4:75459985-75460004 | None:intergenic | 20.0% |
| !!! | TTTTATTAGTTAGCTTGATT+AGG | - | chr1_4:75459996-75460015 | Msa0185330:intron | 20.0% |
| !! | ACATAAAGATAAGTTATTAC+TGG | + | chr1_4:75460251-75460270 | None:intergenic | 20.0% |
| !! | ATCTTTATGTTTAATTAAGC+TGG | - | chr1_4:75460261-75460280 | Msa0185330:intron | 20.0% |
| !! | TCTTTATGTTTAATTAAGCT+GGG | - | chr1_4:75460262-75460281 | Msa0185330:intron | 20.0% |
| !!! | TCATTTTTTGTTTCTCTGAA+TGG | - | chr1_4:75458472-75458491 | Msa0185330:CDS | 25.0% |
| !! | GATTTTATGTCAAAACAGAA+TGG | - | chr1_4:75459060-75459079 | Msa0185330:CDS | 25.0% |
| !! | TAATTTGGGTTTAAACCTTA+TGG | - | chr1_4:75460292-75460311 | Msa0185330:intron | 25.0% |
| ! | CATAGTAAATATAACCCAAT+AGG | + | chr1_4:75460364-75460383 | None:intergenic | 25.0% |
| ! | CTATTGGGTTATATTTACTA+TGG | - | chr1_4:75460362-75460381 | Msa0185330:intron | 25.0% |
| ! | GAGTTGTTATGATAATGCTT+TGG | + | chr1_4:75458001-75458020 | None:intergenic | 30.0% |
| AAAACTGAGAACCTGAAAAA+GGG | + | chr1_4:75458112-75458131 | None:intergenic | 30.0% | |
| GAATGGAGAATACATATTAC+TGG | - | chr1_4:75458489-75458508 | Msa0185330:CDS | 30.0% | |
| !! | GAAGATTTGTTGATCAAATC+TGG | - | chr1_4:75458666-75458685 | Msa0185330:CDS | 30.0% |
| GATTTATGCATGTCATGAAA+TGG | - | chr1_4:75458773-75458792 | Msa0185330:CDS | 30.0% | |
| GTTTAATGCATAGGAAAAAC+GGG | + | chr1_4:75458925-75458944 | None:intergenic | 30.0% | |
| CGTTTAATGCATAGGAAAAA+CGG | + | chr1_4:75458926-75458945 | None:intergenic | 30.0% | |
| ! | CGTTTTTCCTATGCATTAAA+CGG | - | chr1_4:75458924-75458943 | Msa0185330:CDS | 30.0% |
| AACAAATCATGCAATCATTG+AGG | + | chr1_4:75459002-75459021 | None:intergenic | 30.0% | |
| CATAAAATCAAACACGTGAT+CGG | + | chr1_4:75459049-75459068 | None:intergenic | 30.0% | |
| AAAACAGAATGGATCATCAA+GGG | - | chr1_4:75459071-75459090 | Msa0185330:CDS | 30.0% | |
| TCCTTATACTTGATCTTTGA+TGG | - | chr1_4:75460047-75460066 | Msa0185330:intron | 30.0% | |
| ACCATCAAAGATCAAGTATA+AGG | + | chr1_4:75460051-75460070 | None:intergenic | 30.0% | |
| ! | CGCACATTTACTGTTATTTA+TGG | - | chr1_4:75460071-75460090 | Msa0185330:intron | 30.0% |
| AAGGCAATTTCAGACATAAA+AGG | + | chr1_4:75460102-75460121 | None:intergenic | 30.0% | |
| AAGCTGGGTAAAATGTAATT+TGG | - | chr1_4:75460277-75460296 | Msa0185330:intron | 30.0% | |
| AGCTGGGTAAAATGTAATTT+GGG | - | chr1_4:75460278-75460297 | Msa0185330:intron | 30.0% | |
| TAAAGGAATCATAGATTTGC+AGG | + | chr1_4:75460424-75460443 | None:intergenic | 30.0% | |
| !! | GATTGATGATGGTGTTTGTT+TGG | + | chr1_4:75457901-75457920 | None:intergenic | 35.0% |
| GTTGTTGTGAAGATTGATGA+TGG | + | chr1_4:75457912-75457931 | None:intergenic | 35.0% | |
| !! | TCTTGTTTGATCCCTTTTTC+AGG | - | chr1_4:75458098-75458117 | Msa0185330:intron | 35.0% |
| GAAAACTGAGAACCTGAAAA+AGG | + | chr1_4:75458113-75458132 | None:intergenic | 35.0% | |
| !!! | AACCAAGCTTCGTTTTTTGA+GGG | - | chr1_4:75458137-75458156 | Msa0185330:intron | 35.0% |
| TTCATAGTTATGCTGTAACG+TGG | - | chr1_4:75458237-75458256 | Msa0185330:intron | 35.0% | |
| AAATTCTTAGCTTCCATCAC+AGG | + | chr1_4:75458383-75458402 | None:intergenic | 35.0% | |
| TTCGAGATACAATTGTGCAT+GGG | - | chr1_4:75458721-75458740 | Msa0185330:CDS | 35.0% | |
| AAGCTCAGGAGAAAAATAAC+AGG | + | chr1_4:75458804-75458823 | None:intergenic | 35.0% | |
| CAACATTTCACAAACGACAA+AGG | + | chr1_4:75459026-75459045 | None:intergenic | 35.0% | |
| CAAAACAGAATGGATCATCA+AGG | - | chr1_4:75459070-75459089 | Msa0185330:CDS | 35.0% | |
| !! | TCATTTGGTTTGGCTGATAT+GGG | + | chr1_4:75459159-75459178 | None:intergenic | 35.0% |
| ! | CAGTAACCTTTTCAATTTCC+TGG | + | chr1_4:75459345-75459364 | None:intergenic | 35.0% |
| AAGGATCAAGAAGATCATGA+AGG | - | chr1_4:75459393-75459412 | Msa0185330:intron | 35.0% | |
| ! | GACTGATATCTTTGATTTCC+TGG | - | chr1_4:75459576-75459595 | Msa0185330:intron | 35.0% |
| GGTTTAAACCTTATGGTCTT+CGG | - | chr1_4:75460299-75460318 | Msa0185330:intron | 35.0% | |
| TATATCATCCGAAGACCATA+AGG | + | chr1_4:75460310-75460329 | None:intergenic | 35.0% | |
| AATCGTGAGAAACGAGAGAA+TGG | + | chr1_4:75458077-75458096 | None:intergenic | 40.0% | |
| !!! | GAACCAAGCTTCGTTTTTTG+AGG | - | chr1_4:75458136-75458155 | Msa0185330:intron | 40.0% |
| TTCCCTCAAAAAACGAAGCT+TGG | + | chr1_4:75458142-75458161 | None:intergenic | 40.0% | |
| !!! | AAGCTTCGTTTTTTGAGGGA+AGG | - | chr1_4:75458141-75458160 | Msa0185330:intron | 40.0% |
| CTAAAAGACCTGTTCACACA+AGG | + | chr1_4:75458585-75458604 | None:intergenic | 40.0% | |
| GTTCGAGATACAATTGTGCA+TGG | - | chr1_4:75458720-75458739 | Msa0185330:CDS | 40.0% | |
| ! | TCGTTTTCGATCATGACACA+CGG | - | chr1_4:75458827-75458846 | Msa0185330:CDS | 40.0% |
| AGCGTAACCGTTTAATGCAT+AGG | + | chr1_4:75458934-75458953 | None:intergenic | 40.0% | |
| !! | TGATATGGGTTAGATCCGTA+CGG | + | chr1_4:75459145-75459164 | None:intergenic | 40.0% |
| !! | GTCATTTGGTTTGGCTGATA+TGG | + | chr1_4:75459160-75459179 | None:intergenic | 40.0% |
| TATCAGCCAAACCAAATGAC+TGG | - | chr1_4:75459160-75459179 | Msa0185330:intron | 40.0% | |
| ATCAGCCAAACCAAATGACT+GGG | - | chr1_4:75459161-75459180 | Msa0185330:intron | 40.0% | |
| GATCCGTTGTTACATCAGTT+GGG | - | chr1_4:75459191-75459210 | Msa0185330:intron | 40.0% | |
| ATCCGTTGTTACATCAGTTG+GGG | - | chr1_4:75459192-75459211 | Msa0185330:intron | 40.0% | |
| ! | CCTTTTCAATTTCCTGGTAC+TGG | + | chr1_4:75459339-75459358 | None:intergenic | 40.0% |
| CCAGTACCAGGAAATTGAAA+AGG | - | chr1_4:75459336-75459355 | Msa0185330:intron | 40.0% | |
| AAGCACCTGTCATATTTGCA+AGG | - | chr1_4:75459446-75459465 | Msa0185330:intron | 40.0% | |
| AGCACCTGTCATATTTGCAA+GGG | - | chr1_4:75459447-75459466 | Msa0185330:intron | 40.0% | |
| CTCCAATATGAACATCTCAC+AGG | + | chr1_4:75459473-75459492 | None:intergenic | 40.0% | |
| ACCACACTGAAGAGAACAAA+AGG | - | chr1_4:75459512-75459531 | Msa0185330:intron | 40.0% | |
| ! | TCCTTTTGTTCTCTTCAGTG+TGG | + | chr1_4:75459516-75459535 | None:intergenic | 40.0% |
| ACACTGAAGAGAACAAAAGG+AGG | - | chr1_4:75459515-75459534 | Msa0185330:intron | 40.0% | |
| ATATTGCTGCTGCAATCACT+AGG | - | chr1_4:75459554-75459573 | Msa0185330:intron | 40.0% | |
| ATGCTGAGATGTGGATGTTA+AGG | - | chr1_4:75459862-75459881 | Msa0185330:intron | 40.0% | |
| CTGAAATTGCCTTCATTTCC+TGG | - | chr1_4:75460109-75460128 | Msa0185330:five_prime_UTR | 40.0% | |
| ATCAGAAACTGTAGCTGAGA+TGG | - | chr1_4:75460189-75460208 | Msa0185330:intron | 40.0% | |
| TGCAGACTTCTATTGCCTAT+TGG | - | chr1_4:75460346-75460365 | Msa0185330:intron | 40.0% | |
| GCAGACTTCTATTGCCTATT+GGG | - | chr1_4:75460347-75460366 | Msa0185330:intron | 40.0% | |
| ATCGAAAACGACGTAAGCTC+AGG | + | chr1_4:75458818-75458837 | None:intergenic | 45.0% | |
| TTTCGATCATGACACACGGT+TGG | - | chr1_4:75458831-75458850 | Msa0185330:CDS | 45.0% | |
| TTCGATCATGACACACGGTT+GGG | - | chr1_4:75458832-75458851 | Msa0185330:CDS | 45.0% | |
| CGACACAGGCTCAGAAAAAA+CGG | + | chr1_4:75458875-75458894 | None:intergenic | 45.0% | |
| CACAACCAGAATCCGCAAAT+GGG | - | chr1_4:75459094-75459113 | Msa0185330:CDS | 45.0% | |
| ACAACCAGAATCCGCAAATG+GGG | - | chr1_4:75459095-75459114 | Msa0185330:CDS | 45.0% | |
| TCAGCCAAACCAAATGACTG+GGG | - | chr1_4:75459162-75459181 | Msa0185330:intron | 45.0% | |
| TGATGTAACAACGGATCCTG+GGG | + | chr1_4:75459188-75459207 | None:intergenic | 45.0% | |
| CTGATGTAACAACGGATCCT+GGG | + | chr1_4:75459189-75459208 | None:intergenic | 45.0% | |
| ACTGATGTAACAACGGATCC+TGG | + | chr1_4:75459190-75459209 | None:intergenic | 45.0% | |
| GGATCCGTTGTTACATCAGT+TGG | - | chr1_4:75459190-75459209 | Msa0185330:intron | 45.0% | |
| TCCGTTGTTACATCAGTTGG+GGG | - | chr1_4:75459193-75459212 | Msa0185330:intron | 45.0% | |
| AACAACAGCTGCAATCCTTC+TGG | - | chr1_4:75459308-75459327 | Msa0185330:intron | 45.0% | |
| ATCTTCTTGATCCTTGCCAG+AGG | + | chr1_4:75459388-75459407 | None:intergenic | 45.0% | |
| GAAGATCATGAAGGCTGATG+AGG | - | chr1_4:75459402-75459421 | Msa0185330:intron | 45.0% | |
| GGCCTGTGAGATGTTCATAT+TGG | - | chr1_4:75459468-75459487 | Msa0185330:intron | 45.0% | |
| AAGCCAGCACTTCATCTTTC+AGG | + | chr1_4:75459624-75459643 | None:intergenic | 45.0% | |
| !! | TGGAACTGCTGGTGTCATAA+TGG | - | chr1_4:75459729-75459748 | Msa0185330:intron | 45.0% |
| !! | GGAACTGCTGGTGTCATAAT+GGG | - | chr1_4:75459730-75459749 | Msa0185330:intron | 45.0% |
| ! | CATAATGGGAAAGCCTGTGA+TGG | - | chr1_4:75459744-75459763 | Msa0185330:intron | 45.0% |
| TACATGTTTGGGTCCATCAC+AGG | + | chr1_4:75459760-75459779 | None:intergenic | 45.0% | |
| GCTGCTGAGCATACATGTTT+GGG | + | chr1_4:75459771-75459790 | None:intergenic | 45.0% | |
| !! | CACATTTGTGGTGCCATGTA+GGG | + | chr1_4:75459799-75459818 | None:intergenic | 45.0% |
| ATCTAGTGATCTGGAGATGG+TGG | + | chr1_4:75459844-75459863 | None:intergenic | 45.0% | |
| AGCATCTAGTGATCTGGAGA+TGG | + | chr1_4:75459847-75459866 | None:intergenic | 45.0% | |
| CATCTCAGCATCTAGTGATC+TGG | + | chr1_4:75459853-75459872 | None:intergenic | 45.0% | |
| GATCACTAGATGCTGAGATG+TGG | - | chr1_4:75459853-75459872 | Msa0185330:intron | 45.0% | |
| ATCTGCAAGCCAGGAAATGA+AGG | + | chr1_4:75460121-75460140 | None:intergenic | 45.0% | |
| AGATTGCAGGGAACTGCAAT+GGG | - | chr1_4:75460137-75460156 | Msa0185330:intron | 45.0% | |
| TGGGTGTGAAACTGTTCCAT+TGG | - | chr1_4:75460162-75460181 | Msa0185330:intron | 45.0% | |
| ACAGTTTCTGATCGCACCAA+TGG | + | chr1_4:75460181-75460200 | None:intergenic | 45.0% | |
| GGAATCATAGATTTGCAGGC+AGG | + | chr1_4:75460420-75460439 | None:intergenic | 45.0% | |
| CCATGAGAGTTGACTGCTAA+AGG | + | chr1_4:75460441-75460460 | None:intergenic | 45.0% | |
| CCTTTAGCAGTCAACTCTCA+TGG | - | chr1_4:75460438-75460457 | Msa0185330:five_prime_UTR | 45.0% | |
| ! | CTCGCACTTTTGTCTCTCAG+AGG | - | chr1_4:75457820-75457839 | Msa0185330:three_prime_UTR | 50.0% |
| TGTGTGAAGCTGACCTGTGA+TGG | - | chr1_4:75458367-75458386 | Msa0185330:intron | 50.0% | |
| TGTGCATGCCTTGTGTGAAC+AGG | - | chr1_4:75458574-75458593 | Msa0185330:CDS | 50.0% | |
| TCGATCATGACACACGGTTG+GGG | - | chr1_4:75458833-75458852 | Msa0185330:CDS | 50.0% | |
| GTCGTGATCGAAAACGACAC+AGG | + | chr1_4:75458889-75458908 | None:intergenic | 50.0% | |
| GCACAACCAGAATCCGCAAA+TGG | - | chr1_4:75459093-75459112 | Msa0185330:CDS | 50.0% | |
| CAACCAGAATCCGCAAATGG+GGG | - | chr1_4:75459096-75459115 | Msa0185330:CDS | 50.0% | |
| AATCCGCAAATGGGGGTTGT+CGG | - | chr1_4:75459103-75459122 | Msa0185330:CDS | 50.0% | |
| GCCCCCAACTGATGTAACAA+CGG | + | chr1_4:75459197-75459216 | None:intergenic | 50.0% | |
| ! | GTTGCTGCTGATGGATATGC+TGG | + | chr1_4:75459276-75459295 | None:intergenic | 50.0% |
| !! | CTGGTACTGGTTTGACCAGA+AGG | + | chr1_4:75459326-75459345 | None:intergenic | 50.0% |
| CTTCTGGTCAAACCAGTACC+AGG | - | chr1_4:75459324-75459343 | Msa0185330:intron | 50.0% | |
| TCTTGATCCTTGCCAGAGGA+AGG | + | chr1_4:75459384-75459403 | None:intergenic | 50.0% | |
| CAGGCCCTTGCAAATATGAC+AGG | + | chr1_4:75459454-75459473 | None:intergenic | 50.0% | |
| ! | TCATCTTTCAGGTCCTCACG+AGG | + | chr1_4:75459613-75459632 | None:intergenic | 50.0% |
| GGACCTGAAAGATGAAGTGC+TGG | - | chr1_4:75459618-75459637 | Msa0185330:intron | 50.0% | |
| !! | GTGCTGGCTTCAATTCCAAG+AGG | - | chr1_4:75459634-75459653 | Msa0185330:intron | 50.0% |
| ! | GCAACAGGCATTGTTCCTCT+TGG | + | chr1_4:75459652-75459671 | None:intergenic | 50.0% |
| AGAGGAACAATGCCTGTTGC+TGG | - | chr1_4:75459652-75459671 | Msa0185330:intron | 50.0% | |
| !! | CAGTAAGGAAGAGCATCAGC+AGG | + | chr1_4:75459679-75459698 | None:intergenic | 50.0% |
| TGAGGTGGCATGTAGCAGTA+AGG | + | chr1_4:75459694-75459713 | None:intergenic | 50.0% | |
| GACACCAGCAGTTCCAACTT+GGG | + | chr1_4:75459725-75459744 | None:intergenic | 50.0% | |
| TGACACCAGCAGTTCCAACT+TGG | + | chr1_4:75459726-75459745 | None:intergenic | 50.0% | |
| GGCTGCTGAGCATACATGTT+TGG | + | chr1_4:75459772-75459791 | None:intergenic | 50.0% | |
| !! | TTGTGGTGCCATGTAGGGAT+GGG | + | chr1_4:75459794-75459813 | None:intergenic | 50.0% |
| !! | TTTGTGGTGCCATGTAGGGA+TGG | + | chr1_4:75459795-75459814 | None:intergenic | 50.0% |
| !! | CCACATTTGTGGTGCCATGT+AGG | + | chr1_4:75459800-75459819 | None:intergenic | 50.0% |
| CCTACATGGCACCACAAATG+TGG | - | chr1_4:75459797-75459816 | Msa0185330:intron | 50.0% | |
| ! | TTTCCTGGCTTGCAGATTGC+AGG | - | chr1_4:75460124-75460143 | Msa0185330:intron | 50.0% |
| ! | TTCCTGGCTTGCAGATTGCA+GGG | - | chr1_4:75460125-75460144 | Msa0185330:intron | 50.0% |
| CAGATTGCAGGGAACTGCAA+TGG | - | chr1_4:75460136-75460155 | Msa0185330:intron | 50.0% | |
| GATTGCAGGGAACTGCAATG+GGG | - | chr1_4:75460138-75460157 | Msa0185330:intron | 50.0% | |
| ATTGCAGGGAACTGCAATGG+GGG | - | chr1_4:75460139-75460158 | Msa0185330:intron | 50.0% | |
| CGATCATGACACACGGTTGG+GGG | - | chr1_4:75458834-75458853 | Msa0185330:CDS | 55.0% | |
| !! | GTTGGGGGCACTGCAATAGA+GGG | - | chr1_4:75458849-75458868 | Msa0185330:CDS | 55.0% |
| CAACCCCCATTTGCGGATTC+TGG | + | chr1_4:75459102-75459121 | None:intergenic | 55.0% | |
| CTACCGACAACCCCCATTTG+CGG | + | chr1_4:75459109-75459128 | None:intergenic | 55.0% | |
| CAAATGGGGGTTGTCGGTAG+CGG | - | chr1_4:75459109-75459128 | Msa0185330:CDS | 55.0% | |
| AGCGGCAGTCAAATGCCGTA+CGG | - | chr1_4:75459127-75459146 | Msa0185330:CDS | 55.0% | |
| GTTGCTGCTGTTGCTGCTGA+TGG | + | chr1_4:75459285-75459304 | None:intergenic | 55.0% | |
| CAAGAACCACAGCCTTCCTC+TGG | - | chr1_4:75459369-75459388 | Msa0185330:intron | 55.0% | |
| TGGAGTTAACCCTGCGCTCA+TGG | - | chr1_4:75459488-75459507 | Msa0185330:intron | 55.0% | |
| AGTGTGGTTCCATGAGCGCA+GGG | + | chr1_4:75459500-75459519 | None:intergenic | 55.0% | |
| CACGAGGCACAATGTCAACC+AGG | + | chr1_4:75459597-75459616 | None:intergenic | 55.0% | |
| GGTTGACATTGTGCCTCGTG+AGG | - | chr1_4:75459597-75459616 | Msa0185330:intron | 55.0% | |
| ACCAGCAGTTCCAACTTGGG+AGG | + | chr1_4:75459722-75459741 | None:intergenic | 55.0% | |
| !! | TGTGGTGCCATGTAGGGATG+GGG | + | chr1_4:75459793-75459812 | None:intergenic | 55.0% |
| ACAAATGTGGCCACAGCCTC+CGG | - | chr1_4:75459810-75459829 | Msa0185330:intron | 55.0% | |
| TTCCCTGCAATCTGCAAGCC+AGG | + | chr1_4:75460130-75460149 | None:intergenic | 55.0% | |
| !! | GGTTGGGGGCACTGCAATAG+AGG | - | chr1_4:75458848-75458867 | Msa0185330:CDS | 60.0% |
| GGGGCCCCAGTCATTTGGTT+TGG | + | chr1_4:75459169-75459188 | None:intergenic | 60.0% | |
| AACCAAATGACTGGGGCCCC+AGG | - | chr1_4:75459169-75459188 | Msa0185330:intron | 60.0% | |
| ATCCTGGGGCCCCAGTCATT+TGG | + | chr1_4:75459174-75459193 | None:intergenic | 60.0% | |
| CAGTCCACTGGTCAACCTGC+TGG | - | chr1_4:75459220-75459239 | Msa0185330:intron | 60.0% | |
| ! | AGCTCCAGCAGGTTGACCAG+TGG | + | chr1_4:75459227-75459246 | None:intergenic | 60.0% |
| TCAACCTGCTGGAGCTCAGC+TGG | - | chr1_4:75459231-75459250 | Msa0185330:intron | 60.0% | |
| CAACCTGCTGGAGCTCAGCT+GGG | - | chr1_4:75459232-75459251 | Msa0185330:intron | 60.0% | |
| ACCACAGCCTTCCTCTGGCA+AGG | - | chr1_4:75459374-75459393 | Msa0185330:intron | 60.0% | |
| TCCTTGCCAGAGGAAGGCTG+TGG | + | chr1_4:75459378-75459397 | None:intergenic | 60.0% | |
| CAGTGTGGTTCCATGAGCGC+AGG | + | chr1_4:75459501-75459520 | None:intergenic | 60.0% | |
| GCATCAGCAGGACCAGCAAC+AGG | + | chr1_4:75459667-75459686 | None:intergenic | 60.0% | |
| ! | ACTTGGGAGGCATGCTGAGG+TGG | + | chr1_4:75459709-75459728 | None:intergenic | 60.0% |
| ! | CCAACTTGGGAGGCATGCTG+AGG | + | chr1_4:75459712-75459731 | None:intergenic | 60.0% |
| CCTCAGCATGCCTCCCAAGT+TGG | - | chr1_4:75459709-75459728 | Msa0185330:intron | 60.0% | |
| ! | GCCTCCCAAGTTGGAACTGC+TGG | - | chr1_4:75459718-75459737 | Msa0185330:intron | 60.0% |
| TCAGCAGCCCCATCCCTACA+TGG | - | chr1_4:75459783-75459802 | Msa0185330:intron | 60.0% | |
| GGAGGCTGTGGCCACATTTG+TGG | + | chr1_4:75459811-75459830 | None:intergenic | 60.0% | |
| ! | GGAGATGGTGGTCGCTGTTC+CGG | + | chr1_4:75459832-75459851 | None:intergenic | 60.0% |
| CAGGGAACTGCAATGGGGGT+GGG | - | chr1_4:75460143-75460162 | Msa0185330:intron | 60.0% | |
| ! | GTTGGGGGCATGCAGTCCAC+TGG | - | chr1_4:75459208-75459227 | Msa0185330:intron | 65.0% |
| TGACCCAGCTGAGCTCCAGC+AGG | + | chr1_4:75459238-75459257 | None:intergenic | 65.0% | |
| ! | GATGGTGGTCGCTGTTCCGG+AGG | + | chr1_4:75459829-75459848 | None:intergenic | 65.0% |
| GCAGGGAACTGCAATGGGGG+TGG | - | chr1_4:75460142-75460161 | Msa0185330:intron | 65.0% | |
| GGTCGCTGTTCCGGAGGCTG+TGG | + | chr1_4:75459823-75459842 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 75457780 | 75460475 | 75457780 | ID=Msa0185330;Name=Msa0185330 |
| chr1_4 | mRNA | 75457780 | 75460475 | 75457780 | ID=Msa0185330-mRNA-1;Parent=Msa0185330;Name=Msa0185330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|0|0|4|359|260 |
| chr1_4 | exon | 75457780 | 75458116 | 75457780 | ID=Msa0185330-mRNA-1:exon:25698;Parent=Msa0185330-mRNA-1 |
| chr1_4 | exon | 75458372 | 75459177 | 75458372 | ID=Msa0185330-mRNA-1:exon:25697;Parent=Msa0185330-mRNA-1 |
| chr1_4 | exon | 75460093 | 75460135 | 75460093 | ID=Msa0185330-mRNA-1:exon:25696;Parent=Msa0185330-mRNA-1 |
| chr1_4 | exon | 75460414 | 75460475 | 75460414 | ID=Msa0185330-mRNA-1:exon:25695;Parent=Msa0185330-mRNA-1 |
| chr1_4 | five_prime_UTR | 75460414 | 75460475 | 75460414 | ID=Msa0185330-mRNA-1:five_prime_utr;Parent=Msa0185330-mRNA-1 |
| chr1_4 | five_prime_UTR | 75460093 | 75460135 | 75460093 | ID=Msa0185330-mRNA-1:five_prime_utr;Parent=Msa0185330-mRNA-1 |
| chr1_4 | five_prime_UTR | 75459177 | 75459177 | 75459177 | ID=Msa0185330-mRNA-1:five_prime_utr;Parent=Msa0185330-mRNA-1 |
| chr1_4 | CDS | 75458394 | 75459176 | 75458394 | ID=Msa0185330-mRNA-1:cds;Parent=Msa0185330-mRNA-1 |
| chr1_4 | three_prime_UTR | 75458372 | 75458393 | 75458372 | ID=Msa0185330-mRNA-1:three_prime_utr;Parent=Msa0185330-mRNA-1 |
| chr1_4 | three_prime_UTR | 75457780 | 75458116 | 75457780 | ID=Msa0185330-mRNA-1:three_prime_utr;Parent=Msa0185330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
