AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102240 MtrunA17_Chr1g0156321 95.713 863 34 2 1 863 1 860 0.0 1708
Msa0102240 MtrunA17_Chr1g0156301 87.633 283 19 1 581 863 1 267 1.07e-174 504
Msa0102240 MtrunA17_Chr2g0285461 67.847 367 114 3 35 398 15 380 3.91e-168 511
Msa0102240 MtrunA17_Chr5g0433301 68.120 367 113 3 35 398 16 381 7.11e-168 508
Msa0102240 MtrunA17_Chr5g0433301 41.060 151 71 3 730 862 670 820 8.12e-26 114
Msa0102240 MtrunA17_Chr4g0070181 72.886 343 90 3 35 376 15 355 1.69e-167 516
Msa0102240 MtrunA17_Chr4g0070181 39.631 217 120 4 634 849 880 1086 5.40e-34 140
Msa0102240 MtrunA17_Chr3g0109391 68.219 365 112 3 37 398 20 383 4.51e-167 506
Msa0102240 MtrunA17_Chr3g0109391 42.763 152 84 2 712 862 679 828 2.84e-27 119
Msa0102240 MtrunA17_Chr2g0301251 71.137 343 96 3 35 376 15 355 1.35e-163 506
Msa0102240 MtrunA17_Chr2g0301251 60.952 105 41 0 745 849 974 1078 9.30e-33 137
Msa0102240 MtrunA17_Chr8g0376771 66.757 367 117 4 35 398 15 379 7.58e-161 493
Msa0102240 MtrunA17_Chr8g0376771 50.806 124 61 0 739 862 763 886 6.95e-31 130
Msa0102240 MtrunA17_Chr8g0389081 68.047 338 107 1 40 376 29 366 9.67e-150 469
Msa0102240 MtrunA17_Chr8g0389081 39.806 206 100 6 649 849 891 1077 3.69e-34 141
Msa0102240 MtrunA17_Chr2g0276781 53.846 338 154 2 39 376 19 354 1.68e-118 374
Msa0102240 MtrunA17_Chr2g0276781 48.387 93 44 3 756 846 546 636 7.16e-18 88.6
Msa0102240 MtrunA17_Chr8g0385791 53.687 339 154 3 39 376 55 391 2.54e-118 379
Msa0102240 MtrunA17_Chr8g0385791 42.857 91 50 2 757 846 710 799 4.19e-15 79.7
Msa0102240 MtrunA17_Chr8g0346711 51.009 347 165 4 31 376 16 358 2.37e-111 356
Msa0102240 MtrunA17_Chr8g0346711 41.593 113 57 4 747 855 545 652 1.00e-15 81.6
Msa0102240 MtrunA17_Chr2g0326281 50.275 364 153 7 43 381 56 416 1.49e-107 350
Msa0102240 MtrunA17_Chr2g0326281 42.308 104 58 2 757 859 695 797 4.30e-18 89.7
Msa0102240 MtrunA17_Chr2g0282961 50.867 346 147 6 43 376 53 387 8.41e-106 339
Msa0102240 MtrunA17_Chr4g0029671 49.857 349 154 6 43 376 54 396 3.73e-105 343
Msa0102240 MtrunA17_Chr4g0029671 45.055 91 48 2 757 846 663 752 1.97e-18 90.5
Msa0102240 MtrunA17_Chr4g0046371 47.721 373 157 8 43 393 38 394 4.42e-104 337
Msa0102240 MtrunA17_Chr4g0009751 50.877 342 153 7 41 376 17 349 1.31e-103 333
Msa0102240 MtrunA17_Chr7g0239061 47.384 344 174 5 35 376 6 344 4.48e-100 326
Msa0102240 MtrunA17_Chr7g0239061 42.857 91 49 2 757 846 570 658 1.22e-14 78.2
Msa0102240 MtrunA17_Chr2g0326761 40.741 378 177 8 38 376 6 375 4.79e-79 270
Msa0102240 MtrunA17_Chr1g0181211 37.984 387 187 6 36 376 20 399 5.84e-79 270
Msa0102240 MtrunA17_Chr4g0028971 40.365 384 172 8 40 376 9 382 7.05e-77 264
Msa0102240 MtrunA17_Chr1g0199681 38.191 398 196 10 38 394 89 477 7.26e-76 261
Msa0102240 MtrunA17_Chr7g0264171 35.437 412 191 10 36 385 24 422 3.52e-71 246
Msa0102240 MtrunA17_Chr3g0115271 36.951 387 200 7 39 387 15 395 2.13e-66 233
Msa0102240 MtrunA17_Chr7g0264161 38.339 313 173 6 52 356 1 301 3.19e-66 223
Msa0102240 MtrunA17_Chr5g0424931 34.688 369 196 10 38 376 14 367 6.39e-57 204
Msa0102240 MtrunA17_Chr5g0417281 32.644 435 246 15 37 457 5 406 8.89e-57 204
Msa0102240 MtrunA17_Chr8g0356211 42.667 225 121 4 154 376 2 220 3.76e-54 190
Msa0102240 MtrunA17_Chr5g0436761 34.037 379 212 13 38 394 7 369 1.61e-53 193
Msa0102240 MtrunA17_Chr1g0178011 32.153 367 221 10 38 394 7 355 1.30e-49 182
Msa0102240 MtrunA17_Chr2g0289221 35.650 331 167 14 43 356 20 321 7.17e-45 166
Msa0102240 MtrunA17_Chr2g0277461 33.333 339 206 10 43 376 13 336 4.62e-43 163
Msa0102240 MtrunA17_Chr5g0417211 32.622 328 186 11 40 355 9 313 3.59e-40 153
Msa0102240 MtrunA17_Chr5g0424741 31.658 398 212 16 38 396 7 383 1.62e-38 151
Msa0102240 MtrunA17_Chr2g0277531 29.755 326 196 12 40 356 17 318 9.34e-37 141
Msa0102240 MtrunA17_Chr5g0424801 29.107 347 216 10 40 376 9 335 2.68e-33 132
Msa0102240 MtrunA17_Chr1g0156311 61.475 122 14 3 264 385 1 89 7.60e-33 122
Msa0102240 MtrunA17_Chr5g0425261 29.107 347 216 10 40 376 9 335 2.81e-32 129
Msa0102240 MtrunA17_Chr5g0425661 34.300 207 127 4 39 242 33 233 3.05e-32 125
Msa0102240 MtrunA17_Chr5g0424791 28.082 146 97 2 97 242 14 151 1.45e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102240 AT1G19850.1 59.551 890 288 21 19 862 32 895 0.0 971
Msa0102240 AT1G19850.2 59.280 889 293 20 19 861 21 886 0.0 970
Msa0102240 AT1G30330.1 67.925 371 115 3 31 398 11 380 8.26e-168 511
Msa0102240 AT1G30330.1 51.667 120 58 0 737 856 774 893 4.15e-31 132
Msa0102240 AT1G30330.3 67.655 371 116 3 31 398 13 382 1.01e-166 509
Msa0102240 AT1G30330.3 51.667 120 58 0 737 856 776 895 4.62e-31 131
Msa0102240 AT1G30330.2 67.655 371 116 3 31 398 13 382 1.01e-166 509
Msa0102240 AT1G30330.2 51.667 120 58 0 737 856 776 895 4.62e-31 131
Msa0102240 AT1G19220.1 68.365 373 110 5 35 403 15 383 1.15e-165 511
Msa0102240 AT1G19220.1 44.578 166 84 4 687 849 890 1050 4.66e-32 135
Msa0102240 AT5G37020.2 66.846 371 118 4 31 398 11 379 3.04e-165 500
Msa0102240 AT5G37020.2 53.623 69 32 0 757 825 705 773 8.13e-18 89.0
Msa0102240 AT5G37020.1 66.846 371 118 4 31 398 11 379 1.74e-164 499
Msa0102240 AT5G37020.1 51.613 93 45 0 757 849 705 797 2.06e-24 110
Msa0102240 AT5G20730.2 70.262 343 99 3 35 376 16 356 2.74e-158 493
Msa0102240 AT5G20730.2 59.406 101 41 0 749 849 1029 1129 1.89e-31 133
Msa0102240 AT5G20730.3 70.058 344 99 4 35 376 16 357 1.31e-156 489
Msa0102240 AT5G20730.3 59.406 101 41 0 749 849 1030 1130 1.84e-31 133
Msa0102240 AT5G20730.1 70.058 344 99 4 35 376 16 357 1.98e-156 488
Msa0102240 AT5G20730.1 59.406 101 41 0 749 849 1030 1130 2.01e-31 133
Msa0102240 AT5G62000.2 56.140 342 141 4 39 376 57 393 4.22e-123 392
Msa0102240 AT5G62000.2 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
Msa0102240 AT5G62000.5 56.140 342 141 4 39 376 57 393 4.22e-123 392
Msa0102240 AT5G62000.5 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
Msa0102240 AT5G62000.3 56.140 342 141 4 39 376 57 393 4.22e-123 392
Msa0102240 AT5G62000.3 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
Msa0102240 AT5G62000.1 56.140 342 141 4 39 376 57 393 4.22e-123 392
Msa0102240 AT5G62000.1 37.931 145 79 4 706 845 683 821 2.47e-18 90.9
Msa0102240 AT5G62000.4 56.140 342 141 4 39 376 57 393 5.10e-123 392
Msa0102240 AT5G62000.4 35.838 173 88 6 706 861 683 849 1.10e-18 92.0
Msa0102240 AT5G37020.3 65.614 285 94 3 117 398 1 284 7.86e-118 374
Msa0102240 AT5G37020.3 51.613 93 45 0 757 849 610 702 1.28e-24 110
Msa0102240 AT1G59750.4 53.216 342 150 4 39 376 18 353 3.15e-115 366
Msa0102240 AT1G59750.4 48.039 102 49 3 756 855 536 635 6.21e-19 92.4
Msa0102240 AT1G59750.1 53.216 342 150 4 39 376 18 353 3.84e-115 366
Msa0102240 AT1G59750.1 48.039 102 49 3 756 855 541 640 6.22e-19 92.4
Msa0102240 AT1G59750.3 53.216 342 150 4 39 376 18 353 3.84e-115 366
Msa0102240 AT1G59750.3 48.039 102 49 3 756 855 541 640 6.22e-19 92.4
Msa0102240 AT1G59750.2 53.216 342 150 4 39 376 18 353 3.85e-115 366
Msa0102240 AT1G59750.2 48.039 102 49 3 756 855 538 637 6.29e-19 92.4
Msa0102240 AT2G46530.1 51.429 350 162 6 40 386 18 362 2.79e-111 353
Msa0102240 AT2G46530.1 40.000 95 54 2 757 850 490 582 1.86e-14 77.8
Msa0102240 AT2G46530.3 51.429 350 162 6 40 386 39 383 3.63e-111 354
Msa0102240 AT2G46530.3 40.000 95 54 2 757 850 511 603 2.22e-14 77.8
Msa0102240 AT3G61830.1 52.212 339 154 6 40 376 22 354 1.10e-109 349
Msa0102240 AT3G61830.1 46.739 92 44 3 757 846 489 577 7.86e-15 79.0
Msa0102240 AT5G60450.2 50.838 358 161 7 35 381 33 386 3.30e-108 350
Msa0102240 AT5G60450.2 38.835 103 61 2 757 858 641 742 1.68e-16 84.7
Msa0102240 AT4G23980.2 52.326 344 147 6 40 376 9 342 2.09e-107 345
Msa0102240 AT4G23980.2 46.154 91 46 2 757 846 521 609 2.08e-15 80.9
Msa0102240 AT5G60450.1 51.275 353 157 7 40 381 62 410 2.25e-107 349
Msa0102240 AT5G60450.1 38.835 103 61 2 757 858 665 766 1.78e-16 84.7
Msa0102240 AT4G23980.1 52.326 344 147 6 40 376 9 342 2.46e-107 344
Msa0102240 AT4G23980.1 46.154 91 46 2 757 846 523 611 2.16e-15 80.9
Msa0102240 AT2G33860.1 49.284 349 158 4 43 381 54 393 3.21e-103 333
Msa0102240 AT3G61830.2 51.623 308 141 6 71 376 2 303 2.47e-94 307
Msa0102240 AT3G61830.2 46.739 92 44 3 757 846 438 526 6.09e-15 79.3
Msa0102240 AT1G34410.1 44.737 342 181 5 35 376 19 352 4.43e-93 306
Msa0102240 AT1G34410.1 40.909 88 49 2 757 843 511 596 4.05e-12 70.5
Msa0102240 AT1G35540.1 43.860 342 184 6 35 376 19 352 7.83e-91 300
Msa0102240 AT1G35540.1 40.000 90 51 2 757 845 510 597 1.86e-12 71.6
Msa0102240 AT1G35240.1 43.567 342 185 5 35 376 19 352 1.09e-89 296
Msa0102240 AT1G35240.1 42.045 88 48 2 757 843 497 582 2.88e-12 70.9
Msa0102240 AT1G35520.1 44.611 334 177 6 43 376 27 352 5.42e-88 291
Msa0102240 AT1G35520.1 40.741 81 45 2 757 836 511 589 2.47e-11 67.8
Msa0102240 AT1G34310.1 43.567 342 185 6 35 376 19 352 4.28e-87 289
Msa0102240 AT1G34310.1 39.506 81 46 2 757 836 511 589 6.11e-11 66.6
Msa0102240 AT1G34390.1 44.737 342 179 7 35 376 19 350 2.89e-85 285
Msa0102240 AT1G34170.1 41.071 336 188 6 43 376 25 352 9.90e-81 270
Msa0102240 AT2G46530.2 50.545 275 128 6 116 386 5 275 1.92e-78 263
Msa0102240 AT2G46530.2 40.000 95 54 2 757 850 403 495 1.07e-14 78.2
Msa0102240 AT2G33860.2 54.661 236 106 1 146 381 2 236 6.97e-78 260
Msa0102240 AT2G28350.2 38.760 387 179 8 38 376 5 381 1.58e-77 265
Msa0102240 AT2G28350.1 38.760 387 179 8 38 376 5 381 3.33e-77 265
Msa0102240 AT4G30080.1 39.043 397 188 11 35 389 11 395 7.61e-77 263
Msa0102240 AT1G34170.2 38.988 336 169 5 43 376 25 326 4.17e-74 251
Msa0102240 AT1G34170.3 38.988 336 169 5 43 376 25 326 2.76e-73 251
Msa0102240 AT1G77850.1 36.074 377 192 9 37 376 13 377 4.28e-60 215
Msa0102240 AT1G77850.2 36.170 376 191 9 38 376 14 377 4.62e-60 215
Msa0102240 AT1G43950.1 44.076 211 111 5 35 245 19 222 1.18e-47 169

Find 197 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATGTTAA+AGG 0.173174 1_3:+8933189 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1_3:-8933927 Msa0102240:intron
GCCGTTGCAATCCGGATATT+TGG 0.177793 1_3:-8933571 Msa0102240:CDS
AAATACAGAAAATCTGTTTA+TGG 0.194457 1_3:-8934096 Msa0102240:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1_3:+8933618 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1_3:+8932783 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1_3:-8936111 Msa0102240:CDS
TTAGAACCAGGCCACCTTAA+AGG 0.260988 1_3:+8933875 None:intergenic
AGCAAAATCGGGTTAGTGTT+TGG 0.286566 1_3:-8933653 Msa0102240:CDS
CTTTCAGCTGGCATGAGATT+TGG 0.299456 1_3:-8934066 Msa0102240:CDS
TTTAGTCCAAACTCAGATAC+TGG 0.303459 1_3:+8935441 None:intergenic
GAACTATAATGACCTTCATT+TGG 0.311687 1_3:-8931775 Msa0102240:three_prime_UTR
GTGCTTGAAAGGTGAACTTT+TGG 0.314555 1_3:+8933232 None:intergenic
TCTTCACTTCCTATTGGCTT+TGG 0.314981 1_3:+8931500 None:intergenic
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1_3:+8933315 None:intergenic
CGCGCAATTGAATGCATGTT+TGG 0.329869 1_3:-8932207 Msa0102240:CDS
TGGGAATGGGATCGGAATAT+TGG 0.330913 1_3:-8931755 Msa0102240:three_prime_UTR
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1_3:-8933858 Msa0102240:intron
TTCGTCTAATAGTGGATTAA+TGG 0.335254 1_3:-8931562 Msa0102240:three_prime_UTR
TTCTTATTCTGCAGATATAT+GGG 0.354261 1_3:-8933926 Msa0102240:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1_3:+8932640 None:intergenic
AACTATAATGACCTTCATTT+GGG 0.356327 1_3:-8931774 Msa0102240:three_prime_UTR
ATTGAATCTTCGTCTAATAG+TGG 0.360283 1_3:-8931570 Msa0102240:three_prime_UTR
GTGGATTAATGGCAAAGATT+TGG 0.360595 1_3:-8931551 Msa0102240:three_prime_UTR
CCGTTGCAATCCGGATATTT+GGG 0.360826 1_3:-8933570 Msa0102240:intron
TGCATGTTAAAGGTGTTATT+AGG 0.363217 1_3:+8933199 None:intergenic
GCAAAATCGGGTTAGTGTTT+GGG 0.363557 1_3:-8933652 Msa0102240:CDS
TGCTAGTTGGAGATGATCCT+TGG 0.365242 1_3:-8932110 Msa0102240:CDS
CAATACTACATTACAAGTTA+AGG 0.370100 1_3:+8931638 None:intergenic
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1_3:+8935789 None:intergenic
GCATAATCTTGTTGCATGAT+AGG 0.375254 1_3:+8933307 None:intergenic
AATACAGAAAATCTGTTTAT+GGG 0.375476 1_3:-8934095 Msa0102240:CDS
GTTTGTTTGTCGGCTCAAAA+AGG 0.375508 1_3:-8934716 Msa0102240:CDS
GCTGTTTACAATAGAAGAAT+CGG 0.384358 1_3:+8932892 None:intergenic
TTTGATTATAATATGTTAGT+TGG 0.389191 1_3:+8933026 None:intergenic
GTGTTTCCAGTATCTGAGTT+TGG 0.389251 1_3:-8935447 Msa0102240:CDS
TCTAATCTGTCATAAACTAA+TGG 0.393236 1_3:+8931696 None:intergenic
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1_3:-8933698 Msa0102240:intron
CACACTTCTTGGTTCATTGA+AGG 0.399760 1_3:+8932794 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1_3:-8931892 Msa0102240:CDS
TATGGACCAAACAAACCTTC+AGG 0.413743 1_3:-8931728 Msa0102240:three_prime_UTR
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1_3:-8936352 Msa0102240:CDS
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1_3:-8933697 Msa0102240:intron
TTCTGCAGAATAATAACTCT+TGG 0.422237 1_3:-8932442 Msa0102240:CDS
AATGACCTTCATTTGGGAAT+GGG 0.422824 1_3:-8931768 Msa0102240:three_prime_UTR
GATCGGAATATTGGTAGATA+TGG 0.423094 1_3:-8931746 Msa0102240:three_prime_UTR
TCAGTGATGTCGATCCTTTA+AGG 0.425306 1_3:-8933889 Msa0102240:CDS
CTGAATGACACAAAAGGTTC+CGG 0.425971 1_3:-8932171 Msa0102240:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1_3:+8932399 None:intergenic
CACCCTCAAGATTGCATGGT+TGG 0.430745 1_3:-8932596 Msa0102240:CDS
TTGTTGCAGCTTTCAAAAGA+TGG 0.431109 1_3:+8933073 None:intergenic
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1_3:-8934040 Msa0102240:CDS
GAACAACTAGTTCTTGAGTT+GGG 0.432917 1_3:+8935201 None:intergenic
GGTGTGGTGATAAGCAAAAT+CGG 0.435666 1_3:-8933665 Msa0102240:CDS
GTCGATCCTTTAAGGTGGCC+TGG 0.437670 1_3:-8933881 Msa0102240:CDS
ATTGTTGAAAAGTGAGCAAC+CGG 0.440957 1_3:-8933173 Msa0102240:CDS
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1_3:-8936070 Msa0102240:CDS
TATTTGCAGGGCATGTCCTT+CGG 0.447302 1_3:-8934139 Msa0102240:intron
CTAAAACGGCCGTTGCAATC+CGG 0.447348 1_3:-8933579 Msa0102240:CDS
CTTTGACTTCAAGCCTAAAA+CGG 0.447527 1_3:-8933593 Msa0102240:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1_3:+8931901 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1_3:-8931953 Msa0102240:intron
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1_3:-8934375 Msa0102240:CDS
GGAAAAGCTGTTTCCTCCAT+TGG 0.458270 1_3:-8935325 Msa0102240:intron
ACTCTACAACCAAAGCCAAT+AGG 0.459069 1_3:-8931509 Msa0102240:three_prime_UTR
TAATGACCTTCATTTGGGAA+TGG 0.461550 1_3:-8931769 Msa0102240:three_prime_UTR
AGATATATGGGTACAATTGT+AGG 0.463723 1_3:-8933914 Msa0102240:CDS
TATGGGACTCACCTTTCAGC+TGG 0.465604 1_3:-8934078 Msa0102240:CDS
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1_3:-8936327 Msa0102240:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1_3:-8936097 Msa0102240:CDS
GCTAGTTGGAGATGATCCTT+GGG 0.470617 1_3:-8932109 Msa0102240:CDS
GAGTAAACTAGTTTAGTTGT+TGG 0.470860 1_3:+8931528 None:intergenic
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1_3:+8933610 None:intergenic
TTTAGGCTTGAAGTCAAAGA+AGG 0.471500 1_3:+8933597 None:intergenic
ATTAAAGTACCCGAAAATGA+AGG 0.474465 1_3:-8933430 Msa0102240:CDS
CATTGACACAAATTTCACTT+TGG 0.474844 1_3:+8932717 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1_3:+8936029 None:intergenic
AAGAAACGTACCCAAATATC+CGG 0.476983 1_3:+8933560 None:intergenic
GAGAGTGATGTTCTGCTAGT+TGG 0.482377 1_3:-8932123 Msa0102240:CDS
TAATAGTGTCAGTACCACTA+TGG 0.485813 1_3:-8932684 Msa0102240:CDS
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1_3:-8936071 Msa0102240:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1_3:-8936029 Msa0102240:intron
AAGAGACACCTTCTCACAAC+GGG 0.488034 1_3:-8934744 Msa0102240:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.492443 1_3:-8934726 Msa0102240:CDS
TCTAACTGAGGCTGCTGCAT+TGG 0.492863 1_3:+8932956 None:intergenic
AGCTTACAGAATTCAGTGGT+TGG 0.493036 1_3:+8935579 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1_3:-8936339 Msa0102240:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1_3:+8932404 None:intergenic
AAAATGGTGTTTGAAGTAGA+AGG 0.495433 1_3:+8932656 None:intergenic
GGGAAGTCAAACATATGATC+AGG 0.498477 1_3:+8933094 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1_3:-8936336 Msa0102240:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1_3:-8934039 Msa0102240:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1_3:+8932508 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1_3:-8933687 Msa0102240:CDS
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1_3:-8931952 Msa0102240:intron
AACAACTAGTTCTTGAGTTG+GGG 0.512403 1_3:+8935202 None:intergenic
AGATAGTTGTGTTGTGAAAG+TGG 0.513141 1_3:-8936381 Msa0102240:five_prime_UTR
CTGTTTACAATAGAAGAATC+GGG 0.516285 1_3:+8932893 None:intergenic
TACGTATACTAGTTTCCATC+CGG 0.523910 1_3:+8932152 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1_3:-8936068 Msa0102240:CDS
CCTTCATTTGGGAATGGGAT+CGG 0.524562 1_3:-8931763 Msa0102240:three_prime_UTR
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1_3:-8931891 Msa0102240:CDS
TGCCAACCATGCAATCTTGA+GGG 0.526265 1_3:+8932594 None:intergenic
TGATTGTTCAATGAATCAAA+AGG 0.527223 1_3:-8931668 Msa0102240:three_prime_UTR
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1_3:-8934029 Msa0102240:intron
CCGATCCCATTCCCAAATGA+AGG 0.532615 1_3:+8931763 None:intergenic
GAGATTTGCATGATAATACA+TGG 0.533645 1_3:-8935178 Msa0102240:CDS
ATGGACCAAACAAACCTTCA+GGG 0.536935 1_3:-8931727 Msa0102240:three_prime_UTR
CGCAGATAGACGTAGACGAA+TGG 0.538497 1_3:-8932862 Msa0102240:CDS
AACTTAAGTTCTAGTCAAGA+TGG 0.540183 1_3:-8932572 Msa0102240:CDS
CCATTGTTGTTGATCACCTG+TGG 0.540797 1_3:+8933340 None:intergenic
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1_3:-8933681 Msa0102240:CDS
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1_3:-8935346 Msa0102240:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1_3:+8934029 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1_3:-8936069 Msa0102240:CDS
GTGTGGTGATAAGCAAAATC+GGG 0.545815 1_3:-8933664 Msa0102240:CDS
CGAACAACTAGTTCTTGAGT+TGG 0.551901 1_3:+8935200 None:intergenic
TGTTGCAGCTTTCAAAAGAT+GGG 0.552162 1_3:+8933074 None:intergenic
TGATGAGTGGTTTCACTCAA+AGG 0.555163 1_3:-8936864 Msa0102240:intron
TCAGCACCCTCAAGATTGCA+TGG 0.555417 1_3:-8932600 Msa0102240:CDS
GTATGCTCTCTGTGCTTGAA+AGG 0.557270 1_3:+8933221 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1_3:-8934046 Msa0102240:CDS
TGGAGCATGTCAATCATTTG+AGG 0.562075 1_3:+8932917 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1_3:+8936028 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1_3:-8932792 Msa0102240:CDS
TAGCAGAAGTAATCTGAGAC+TGG 0.563668 1_3:+8932549 None:intergenic
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1_3:+8934325 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1_3:+8935780 None:intergenic
CAAATCTCATGCCAGCTGAA+AGG 0.565921 1_3:+8934067 None:intergenic
TGTGGACTTCATATCTTGCA+AGG 0.568033 1_3:+8933270 None:intergenic
CTGAACAGCGGAGCATTGCA+AGG 0.572206 1_3:-8931859 Msa0102240:CDS
TGGTTCATTGAAGGTATCGA+GGG 0.572733 1_3:+8932803 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1_3:+8934736 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1_3:+8932394 None:intergenic
TCAGAGTGTGATGTGATGAG+TGG 0.573357 1_3:-8936877 Msa0102240:five_prime_UTR
GTTGTGAGAAGGTGTCTCTT+CGG 0.575157 1_3:+8934747 None:intergenic
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1_3:-8936043 Msa0102240:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1_3:+8934247 None:intergenic
CTATGATGCAGAAAATGAGT+GGG 0.579800 1_3:-8933476 Msa0102240:intron
AATTGAATGCATGTTTGGAC+TGG 0.580066 1_3:-8932202 Msa0102240:CDS
TTGCCAACCATGCAATCTTG+AGG 0.582580 1_3:+8932593 None:intergenic
TAATACAAAATTAGAATCTG+AGG 0.583985 1_3:-8933122 Msa0102240:CDS
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1_3:-8932793 Msa0102240:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.586460 1_3:-8933871 Msa0102240:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1_3:+8933863 None:intergenic
GAACTAGTATGAGCGAGTAA+TGG 0.586998 1_3:+8932983 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1_3:-8934740 Msa0102240:CDS
CTATATAGCCTTACCAATGG+AGG 0.589175 1_3:+8935312 None:intergenic
ACTTGACACAACAACTGAGA+TGG 0.591159 1_3:+8935771 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1_3:-8936067 Msa0102240:CDS
ATCGAGGGATTCACTACTTG+AGG 0.592078 1_3:+8932818 None:intergenic
TCGATTAGCAGCTGCATGAG+CGG 0.593060 1_3:+8934273 None:intergenic
CCCAAATATCCGGATTGCAA+CGG 0.593442 1_3:+8933570 None:intergenic
TGGATTCTCTATAACCTGTG+TGG 0.593849 1_3:+8933252 None:intergenic
TTACAATAGAAGAATCGGGT+TGG 0.596283 1_3:+8932897 None:intergenic
TTGGTTCATTGAAGGTATCG+AGG 0.596449 1_3:+8932802 None:intergenic
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1_3:-8936324 Msa0102240:CDS
ATATAGCTTACAGAATTCAG+TGG 0.600450 1_3:+8935575 None:intergenic
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1_3:-8933686 Msa0102240:CDS
GAGAAGTCGCAATTGCGAGT+TGG 0.609632 1_3:-8934382 Msa0102240:CDS
GGGTGAGAAACTTACTCCCA+AGG 0.617581 1_3:+8932093 None:intergenic
ACAACTAGTTCTTGAGTTGG+GGG 0.617960 1_3:+8935203 None:intergenic
ATGACACAAAAGGTTCCGGA+TGG 0.629064 1_3:-8932167 Msa0102240:CDS
GGTCTGCTGAATGACACAAA+AGG 0.630277 1_3:-8932177 Msa0102240:CDS
TACTTTCATCAAAATCAACA+TGG 0.633033 1_3:+8932468 None:intergenic
AAAGAAATGCAAGAACATTG+TGG 0.633626 1_3:-8936270 Msa0102240:intron
TGGACCAAACAAACCTTCAG+GGG 0.636992 1_3:-8931726 Msa0102240:three_prime_UTR
ACAACTGAGATGGAAGACTA+GGG 0.639765 1_3:+8935781 None:intergenic
ACTTGAGGCAATGACACAAG+AGG 0.641095 1_3:+8936073 None:intergenic
TTGTGAAAGTGGAACAAACA+TGG 0.644036 1_3:-8936370 Msa0102240:exon
GTGGACTTCATATCTTGCAA+GGG 0.645449 1_3:+8933271 None:intergenic
CCACAGGTGATCAACAACAA+TGG 0.657687 1_3:-8933340 Msa0102240:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1_3:+8932944 None:intergenic
CATTCGTCTACGTCTATCTG+CGG 0.660180 1_3:+8932863 None:intergenic
GCTAGTGATACTAGCACACA+TGG 0.660819 1_3:-8935375 Msa0102240:CDS
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1_3:-8932503 Msa0102240:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1_3:+8932670 None:intergenic
ACCCGAAAATGAAGGAACAG+TGG 0.665241 1_3:-8933422 Msa0102240:CDS
CTTGAGGCAATGACACAAGA+GGG 0.667127 1_3:+8936074 None:intergenic
CAAACATGCATTCAATTGCG+CGG 0.668814 1_3:+8932208 None:intergenic
GAATGCATGTTTGGACTGGA+CGG 0.670392 1_3:-8932198 Msa0102240:CDS
GGGATGAAGCTTCTGAACAG+CGG 0.672458 1_3:-8931871 Msa0102240:CDS
GGACCAAACAAACCTTCAGG+GGG 0.676281 1_3:-8931725 Msa0102240:three_prime_UTR
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1_3:-8931951 Msa0102240:intron
TCTATGATGCAGAAAATGAG+TGG 0.683454 1_3:-8933477 Msa0102240:intron
GCAAGATATGAAGTCCACAC+AGG 0.685567 1_3:-8933266 Msa0102240:CDS
AGTGGAATAACAAAATCCGA+AGG 0.692028 1_3:+8934123 None:intergenic
GTGATGTCGATCCTTTAAGG+TGG 0.692501 1_3:-8933886 Msa0102240:CDS
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1_3:+8935800 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1_3:-8934310 Msa0102240:CDS
TATGATGCAGAAAATGAGTG+GGG 0.696824 1_3:-8933475 Msa0102240:intron
GTGATAATATTCGTATACAG+CGG 0.703562 1_3:+8931923 None:intergenic
GAAGAGACACCTTCTCACAA+CGG 0.710470 1_3:-8934745 Msa0102240:CDS
ACCAATCCGAACCTACACAA+AGG 0.719172 1_3:-8932405 Msa0102240:intron
ACATTTCGACATATCTACCG+AGG 0.754798 1_3:-8935155 Msa0102240:intron
GACCAAACAAACCTTCAGGG+GGG 0.757174 1_3:-8931724 Msa0102240:three_prime_UTR
AGTGATACTAGCACACATGG+TGG 0.770082 1_3:-8935372 Msa0102240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTTAATTTTTACAA+TGG - chr1_3:8932250-8932269 Msa0102240:CDS 10.0%
!! AAAAATTAAGAAAAAAGAGA+AGG + chr1_3:8932246-8932265 None:intergenic 15.0%
!!! ATTTTGATTTGATTGATATT+TGG - chr1_3:8932314-8932333 Msa0102240:intron 15.0%
!!! TATTATTTTTCATTTGTGTT+AGG - chr1_3:8932999-8933018 Msa0102240:CDS 15.0%
!!! CAATTTTTTCAGATTATTAT+CGG - chr1_3:8933455-8933474 Msa0102240:CDS 15.0%
!! ATCTAAAAATATTATATGTC+AGG + chr1_3:8934285-8934304 None:intergenic 15.0%
!! AAATTTCTTTGTAAATAAAC+AGG - chr1_3:8934771-8934790 Msa0102240:intron 15.0%
!!! TAATTTTGTATTATTGGTTT+TGG + chr1_3:8935348-8935367 None:intergenic 15.0%
!!! AGATTCTAATTTTGTATTAT+TGG + chr1_3:8935354-8935373 None:intergenic 15.0%
!! TTTGATTATAATATGTTAGT+TGG + chr1_3:8935454-8935473 None:intergenic 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG - chr1_3:8936438-8936457 Msa0102240:intron 15.0%
!!! ATTAATGATGATGATCAAAA+TGG - chr1_3:8931903-8931922 Msa0102240:CDS 20.0%
!!! TTTACAATGGTTATGTTTTA+TGG - chr1_3:8932263-8932282 Msa0102240:CDS 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG - chr1_3:8932336-8932355 Msa0102240:intron 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG - chr1_3:8932337-8932356 Msa0102240:intron 20.0%
!! AGACATTAAATTCAGAATTA+TGG - chr1_3:8932366-8932385 Msa0102240:intron 20.0%
!!! ATTGTAGTTTTAAGTTTCTT+TGG - chr1_3:8932547-8932566 Msa0102240:CDS 20.0%
!! ATTGTACATCTAAATGTTAT+TGG - chr1_3:8932958-8932977 Msa0102240:CDS 20.0%
!! AAATTTAGGGAAAAAATGTA+AGG + chr1_3:8933696-8933715 None:intergenic 20.0%
!!! ATGTAATGGTTTTCAATATT+AGG - chr1_3:8933967-8933986 Msa0102240:intron 20.0%
!! TTTCAATATTAGGAAAATTG+TGG - chr1_3:8933977-8933996 Msa0102240:intron 20.0%
!! ATTTATGTAGAGATGATTAT+TGG + chr1_3:8934038-8934057 None:intergenic 20.0%
!!! AATATTTTTAGATCTAATCG+TGG - chr1_3:8934292-8934311 Msa0102240:CDS 20.0%
!!! ATAAACAGATTTTCTGTATT+TGG + chr1_3:8934382-8934401 None:intergenic 20.0%
!! AAATACAGAAAATCTGTTTA+TGG - chr1_3:8934381-8934400 Msa0102240:CDS 20.0%
!! AATACAGAAAATCTGTTTAT+GGG - chr1_3:8934382-8934401 Msa0102240:CDS 20.0%
!! AATGGTATATCTTAATAACT+GGG + chr1_3:8934664-8934683 None:intergenic 20.0%
!! CTTAATCTTAGTAATATAGT+CGG - chr1_3:8934741-8934760 Msa0102240:CDS 20.0%
!! TAATACAAAATTAGAATCTG+AGG - chr1_3:8935355-8935374 Msa0102240:CDS 20.0%
!!! TAACATTATTTCTGTAATGT+TGG - chr1_3:8936095-8936114 Msa0102240:CDS 20.0%
! AAAAGGGTAGTACAAAATAA+GGG + chr1_3:8931930-8931949 None:intergenic 25.0%
! TTATTCCTCTTTATTGAGTT+TGG - chr1_3:8932041-8932060 Msa0102240:intron 25.0%
!!! GGTTGTACTAATTTTTGTTT+AGG - chr1_3:8932335-8932354 Msa0102240:intron 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG - chr1_3:8932582-8932601 Msa0102240:CDS 25.0%
! TCAAAACATACAAGTTAAAG+TGG + chr1_3:8932831-8932850 None:intergenic 25.0%
!!! AACTTGTATGTTTTGATGAT+AGG - chr1_3:8932835-8932854 Msa0102240:CDS 25.0%
! AAAACACACTAATCAAATGA+GGG + chr1_3:8933231-8933250 None:intergenic 25.0%
!!! TGTTTATTTTACCAAACCAA+TGG + chr1_3:8933539-8933558 None:intergenic 25.0%
!!! ATTGGTTTGGTAAAATAAAC+AGG - chr1_3:8933538-8933557 Msa0102240:intron 25.0%
! ACTGCAACTTTATTATTGTT+TGG - chr1_3:8933603-8933622 Msa0102240:CDS 25.0%
! CTGCAACTTTATTATTGTTT+GGG - chr1_3:8933604-8933623 Msa0102240:CDS 25.0%
!! ACCTTCAAAATAATTAGTCT+TGG - chr1_3:8933649-8933668 Msa0102240:CDS 25.0%
!!! TCCAAGACTAATTATTTTGA+AGG + chr1_3:8933653-8933672 None:intergenic 25.0%
!! TTTCCCTAAATTTTTCATGT+AGG - chr1_3:8933703-8933722 Msa0102240:intron 25.0%
! TGACCTACATGAAAAATTTA+GGG + chr1_3:8933709-8933728 None:intergenic 25.0%
! ATTACATTGCAATGTAACTA+TGG + chr1_3:8933954-8933973 None:intergenic 25.0%
! ATAGTTACATTGCAATGTAA+TGG - chr1_3:8933953-8933972 Msa0102240:intron 25.0%
! AAAATAACAAGTTGCTAATC+AGG + chr1_3:8934006-8934025 None:intergenic 25.0%
! TGATGTGTTAATTGTTACAA+GGG - chr1_3:8934070-8934089 Msa0102240:CDS 25.0%
! AAACATATTTAGGTATACCT+TGG + chr1_3:8934254-8934273 None:intergenic 25.0%
! AAAATATTATATGTCAGGTG+AGG + chr1_3:8934280-8934299 None:intergenic 25.0%
! TCAACTATTATAGTTAGTTC+AGG + chr1_3:8934521-8934540 None:intergenic 25.0%
! TTCTTATTCTGCAGATATAT+GGG - chr1_3:8934551-8934570 Msa0102240:intron 25.0%
! ATGGTATATCTTAATAACTG+GGG + chr1_3:8934663-8934682 None:intergenic 25.0%
! GAATGGTATATCTTAATAAC+TGG + chr1_3:8934665-8934684 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG - chr1_3:8934716-8934735 Msa0102240:CDS 25.0%
! CGACTATATTACTAAGATTA+AGG + chr1_3:8934743-8934762 None:intergenic 25.0%
!!! AAGTACAAGACATTTTGATA+AGG + chr1_3:8934958-8934977 None:intergenic 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG + chr1_3:8935044-8935063 None:intergenic 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG + chr1_3:8935045-8935064 None:intergenic 25.0%
!!! ATGTCAAGAATTTTAACTTG+AGG - chr1_3:8935714-8935733 Msa0102240:intron 25.0%
!!! TGTCAAGAATTTTAACTTGA+GGG - chr1_3:8935715-8935734 Msa0102240:intron 25.0%
! TACTTTCATCAAAATCAACA+TGG + chr1_3:8936012-8936031 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG + chr1_3:8936086-8936105 None:intergenic 25.0%
! TATACAAGATCGAAACAAAT+TGG + chr1_3:8936142-8936161 None:intergenic 25.0%
! AACTATAATGACCTTCATTT+GGG - chr1_3:8936703-8936722 Msa0102240:intron 25.0%
! TCTAATCTGTCATAAACTAA+TGG + chr1_3:8936784-8936803 None:intergenic 25.0%
! TGATTGTTCAATGAATCAAA+AGG - chr1_3:8936809-8936828 Msa0102240:intron 25.0%
! CAATACTACATTACAAGTTA+AGG + chr1_3:8936842-8936861 None:intergenic 25.0%
GGAACAAAAACTGCTAAAAA+AGG + chr1_3:8931794-8931813 None:intergenic 30.0%
ATGTGAAAAAGAGTGAACTA+AGG + chr1_3:8931815-8931834 None:intergenic 30.0%
!! TCACTCTTTTTCACATTACT+TGG - chr1_3:8931819-8931838 Msa0102240:three_prime_UTR 30.0%
CAAAAGGGTAGTACAAAATA+AGG + chr1_3:8931931-8931950 None:intergenic 30.0%
GAGAAGTAGAAGAAACAAAA+GGG + chr1_3:8931946-8931965 None:intergenic 30.0%
AGAGAAGTAGAAGAAACAAA+AGG + chr1_3:8931947-8931966 None:intergenic 30.0%
TCAAGTCAATGCAACTAAAT+GGG - chr1_3:8931970-8931989 Msa0102240:intron 30.0%
!!! GGTGGTAGTGTTTATTTTTT+TGG - chr1_3:8931992-8932011 Msa0102240:intron 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG + chr1_3:8932136-8932155 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG - chr1_3:8932207-8932226 Msa0102240:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG - chr1_3:8932627-8932646 Msa0102240:CDS 30.0%
TAGAAATGCACAACAAAAAG+TGG + chr1_3:8932774-8932793 None:intergenic 30.0%
ATATAGCTTACAGAATTCAG+TGG + chr1_3:8932905-8932924 None:intergenic 30.0%
! GTTTTTCTGCAAAACTTTGA+CGG - chr1_3:8933080-8933099 Msa0102240:CDS 30.0%
CAAAACACACTAATCAAATG+AGG + chr1_3:8933232-8933251 None:intergenic 30.0%
! CTCATTTGATTAGTGTGTTT+TGG - chr1_3:8933230-8933249 Msa0102240:CDS 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG - chr1_3:8933237-8933256 Msa0102240:CDS 30.0%
GAGATTTGCATGATAATACA+TGG - chr1_3:8933299-8933318 Msa0102240:CDS 30.0%
! ACACCATTAATCTAAAGTGT+AGG + chr1_3:8933383-8933402 None:intergenic 30.0%
TTTCAGATTATTATCGGTGT+CGG - chr1_3:8933461-8933480 Msa0102240:CDS 30.0%
ATAGTTCAATCTATGTCCAT+TGG - chr1_3:8933520-8933539 Msa0102240:intron 30.0%
CTGACCTACATGAAAAATTT+AGG + chr1_3:8933710-8933729 None:intergenic 30.0%
CTCTGTTACTATCTGAATAT+AGG - chr1_3:8933867-8933886 Msa0102240:CDS 30.0%
ATGTAGAGATGATTATTGGT+TGG + chr1_3:8934034-8934053 None:intergenic 30.0%
GTGATGTGTTAATTGTTACA+AGG - chr1_3:8934069-8934088 Msa0102240:CDS 30.0%
GGTGAGGTATAAACATATTT+AGG + chr1_3:8934264-8934283 None:intergenic 30.0%
TTCTTGAGTGTATTATTTGC+AGG - chr1_3:8934325-8934344 Msa0102240:CDS 30.0%
TCTTGAGTGTATTATTTGCA+GGG - chr1_3:8934326-8934345 Msa0102240:CDS 30.0%
AAAACAGTTCAGAAGAATTC+AGG + chr1_3:8934480-8934499 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG - chr1_3:8934550-8934569 Msa0102240:intron 30.0%
AGATATATGGGTACAATTGT+AGG - chr1_3:8934563-8934582 Msa0102240:intron 30.0%
TTGTAAATAAACAGGCTGAA+TGG - chr1_3:8934779-8934798 Msa0102240:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG - chr1_3:8934780-8934799 Msa0102240:intron 30.0%
TCAAAGAAGGAAAGATGAAA+AGG + chr1_3:8934870-8934889 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG + chr1_3:8934954-8934973 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG + chr1_3:8934955-8934974 None:intergenic 30.0%
! ATTAAAGTACCCGAAAATGA+AGG - chr1_3:8935047-8935066 Msa0102240:intron 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG + chr1_3:8935098-8935117 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_3:8935109-8935128 None:intergenic 30.0%
! GAAGATGTTTTATAAACCAC+AGG - chr1_3:8935121-8935140 Msa0102240:intron 30.0%
TTGTTGCATGATAGGTAAAA+AGG + chr1_3:8935165-8935184 None:intergenic 30.0%
!! TGCATGTTAAAGGTGTTATT+AGG + chr1_3:8935281-8935300 None:intergenic 30.0%
CAACAATGAATGCATGTTAA+AGG + chr1_3:8935291-8935310 None:intergenic 30.0%
CAACATCGAAAAAGTGAATA+CGG - chr1_3:8935424-8935443 Msa0102240:CDS 30.0%
!!! ATGGATTTTGAGTTTGGTTT+TGG + chr1_3:8935478-8935497 None:intergenic 30.0%
CTGTTTACAATAGAAGAATC+GGG + chr1_3:8935587-8935606 None:intergenic 30.0%
GCTGTTTACAATAGAAGAAT+CGG + chr1_3:8935588-8935607 None:intergenic 30.0%
CATTGACACAAATTTCACTT+TGG + chr1_3:8935763-8935782 None:intergenic 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG + chr1_3:8935824-8935843 None:intergenic 30.0%
! AACTTAAGTTCTAGTCAAGA+TGG - chr1_3:8935905-8935924 Msa0102240:intron 30.0%
TTCTGCAGAATAATAACTCT+TGG - chr1_3:8936035-8936054 Msa0102240:CDS 30.0%
TTCGATCTTGTATATCATGA+TGG - chr1_3:8936148-8936167 Msa0102240:intron 30.0%
TCAAACATTACACGAAAGAA+GGG + chr1_3:8936407-8936426 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG + chr1_3:8936408-8936427 None:intergenic 30.0%
GTGATAATATTCGTATACAG+CGG + chr1_3:8936557-8936576 None:intergenic 30.0%
TTAAAGAGATGAGTGAAGAA+GGG - chr1_3:8936586-8936605 Msa0102240:intron 30.0%
GAACTATAATGACCTTCATT+TGG - chr1_3:8936702-8936721 Msa0102240:intron 30.0%
ATTGAATCTTCGTCTAATAG+TGG - chr1_3:8936907-8936926 Msa0102240:five_prime_UTR 30.0%
!! TTCGTCTAATAGTGGATTAA+TGG - chr1_3:8936915-8936934 Msa0102240:five_prime_UTR 30.0%
! GAGTAAACTAGTTTAGTTGT+TGG + chr1_3:8936952-8936971 None:intergenic 30.0%
!!! CTTTTTTCTTCACTTCCTAT+TGG + chr1_3:8936986-8937005 None:intergenic 30.0%
CTCAAGTCAATGCAACTAAA+TGG - chr1_3:8931969-8931988 Msa0102240:intron 35.0%
CAAGTCAATGCAACTAAATG+GGG - chr1_3:8931971-8931990 Msa0102240:intron 35.0%
TTCCTCTTTATTGAGTTTGG+TGG - chr1_3:8932044-8932063 Msa0102240:intron 35.0%
AGATAGTTGTGTTGTGAAAG+TGG - chr1_3:8932096-8932115 Msa0102240:intron 35.0%
TTGTGAAAGTGGAACAAACA+TGG - chr1_3:8932107-8932126 Msa0102240:intron 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG - chr1_3:8932138-8932157 Msa0102240:CDS 35.0%
TTTAGTCCAAACTCAGATAC+TGG + chr1_3:8933039-8933058 None:intergenic 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG + chr1_3:8933075-8933094 None:intergenic 35.0%
TAAGGCTATATAGCACTAGT+TGG - chr1_3:8933175-8933194 Msa0102240:CDS 35.0%
TCTTGTACAGCCATAAAAGA+GGG + chr1_3:8933207-8933226 None:intergenic 35.0%
TTCTTGTACAGCCATAAAAG+AGG + chr1_3:8933208-8933227 None:intergenic 35.0%
! AACAACTAGTTCTTGAGTTG+GGG + chr1_3:8933278-8933297 None:intergenic 35.0%
! GAACAACTAGTTCTTGAGTT+GGG + chr1_3:8933279-8933298 None:intergenic 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG + chr1_3:8933376-8933395 None:intergenic 35.0%
GCACCTACACTTTAGATTAA+TGG - chr1_3:8933377-8933396 Msa0102240:CDS 35.0%
CTTTAGATTAATGGTGTGTC+CGG - chr1_3:8933386-8933405 Msa0102240:CDS 35.0%
! AACTATGTGTGTTTGAGATC+AGG + chr1_3:8933430-8933449 None:intergenic 35.0%
! TCAATCTATGTCCATTGGTT+TGG - chr1_3:8933525-8933544 Msa0102240:intron 35.0%
GGAATAAATGTTTGTGCTTG+TGG - chr1_3:8933559-8933578 Msa0102240:intron 35.0%
! GCGATTCTGTTCTTTTTATC+AGG - chr1_3:8933794-8933813 Msa0102240:intron 35.0%
ACAGAGTTTCGTATCATGTT+TGG + chr1_3:8933853-8933872 None:intergenic 35.0%
GGATTGTAGAAAATCGTGAA+TGG + chr1_3:8934233-8934252 None:intergenic 35.0%
! TCACGATTTTCTACAATCCA+AGG - chr1_3:8934234-8934253 Msa0102240:intron 35.0%
AGTGGAATAACAAAATCCGA+AGG + chr1_3:8934357-8934376 None:intergenic 35.0%
!!! TTCGGATTTTGTTATTCCAC+TGG - chr1_3:8934356-8934375 Msa0102240:CDS 35.0%
TTCTAAGTGGCGAAATATTC+AGG - chr1_3:8934619-8934638 Msa0102240:intron 35.0%
TTTAGGCTTGAAGTCAAAGA+AGG + chr1_3:8934883-8934902 None:intergenic 35.0%
! CTTTGACTTCAAGCCTAAAA+CGG - chr1_3:8934884-8934903 Msa0102240:intron 35.0%
AAGAAACGTACCCAAATATC+CGG + chr1_3:8934920-8934939 None:intergenic 35.0%
! TTGCTCACTAGTGGTTATTT+TGG - chr1_3:8934976-8934995 Msa0102240:intron 35.0%
TCTATGATGCAGAAAATGAG+TGG - chr1_3:8935000-8935019 Msa0102240:intron 35.0%
CTATGATGCAGAAAATGAGT+GGG - chr1_3:8935001-8935020 Msa0102240:intron 35.0%
TATGATGCAGAAAATGAGTG+GGG - chr1_3:8935002-8935021 Msa0102240:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG + chr1_3:8935173-8935192 None:intergenic 35.0%
ATTGTTGAAAAGTGAGCAAC+CGG - chr1_3:8935304-8935323 Msa0102240:intron 35.0%
!!! GTATTATTGGTTTTGGCGAT+AGG + chr1_3:8935341-8935360 None:intergenic 35.0%
TGTTGCAGCTTTCAAAAGAT+GGG + chr1_3:8935406-8935425 None:intergenic 35.0%
TTGTTGCAGCTTTCAAAAGA+TGG + chr1_3:8935407-8935426 None:intergenic 35.0%
!!! CGAGTAATGGATTTTGAGTT+TGG + chr1_3:8935484-8935503 None:intergenic 35.0%
! GACATTGATGATTCTAACTG+AGG + chr1_3:8935536-8935555 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG + chr1_3:8935583-8935602 None:intergenic 35.0%
! TTCAATGAACCAAGAAGTGT+GGG - chr1_3:8935685-8935704 Msa0102240:intron 35.0%
CATAATTATCCCACACTTCT+TGG + chr1_3:8935697-8935716 None:intergenic 35.0%
TAATAGTGTCAGTACCACTA+TGG - chr1_3:8935793-8935812 Msa0102240:CDS 35.0%
ATGTTACCTTTGTGTAGGTT+CGG + chr1_3:8936081-8936100 None:intergenic 35.0%
GATGGTATTTATTGTGTCTG+TGG - chr1_3:8936166-8936185 Msa0102240:intron 35.0%
AATTGAATGCATGTTTGGAC+TGG - chr1_3:8936275-8936294 Msa0102240:CDS 35.0%
! TACGTATACTAGTTTCCATC+CGG + chr1_3:8936328-8936347 None:intergenic 35.0%
ACAATGTTGTGATCTTGTGT+AGG - chr1_3:8936514-8936533 Msa0102240:intron 35.0%
CAATGTTGTGATCTTGTGTA+GGG - chr1_3:8936515-8936534 Msa0102240:intron 35.0%
ATCTTGTGTAGGGAATTTGT+GGG - chr1_3:8936525-8936544 Msa0102240:intron 35.0%
! CTCATCTCTTTAACTTCTGA+AGG + chr1_3:8936579-8936598 None:intergenic 35.0%
GTTAAAGAGATGAGTGAAGA+AGG - chr1_3:8936585-8936604 Msa0102240:intron 35.0%
TAATGACCTTCATTTGGGAA+TGG - chr1_3:8936708-8936727 Msa0102240:intron 35.0%
AATGACCTTCATTTGGGAAT+GGG - chr1_3:8936709-8936728 Msa0102240:intron 35.0%
GATCGGAATATTGGTAGATA+TGG - chr1_3:8936731-8936750 Msa0102240:intron 35.0%
! GTGGATTAATGGCAAAGATT+TGG - chr1_3:8936926-8936945 Msa0102240:five_prime_UTR 35.0%
TGATGAGTGGTTTCACTCAA+AGG - chr1_3:8931613-8931632 Msa0102240:three_prime_UTR 40.0%
GCGTATCAAAGCATAATGAG+TGG + chr1_3:8931685-8931704 None:intergenic 40.0%
CACCACCAAACTCAATAAAG+AGG + chr1_3:8932049-8932068 None:intergenic 40.0%
CATGGCTTCCTTAGAAGAAA+AGG - chr1_3:8932125-8932144 Msa0102240:CDS 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG - chr1_3:8932141-8932160 Msa0102240:CDS 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG - chr1_3:8932150-8932169 Msa0102240:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG - chr1_3:8932434-8932453 Msa0102240:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG + chr1_3:8932643-8932662 None:intergenic 40.0%
ACAACTGAGATGGAAGACTA+GGG + chr1_3:8932699-8932718 None:intergenic 40.0%
AACAACTGAGATGGAAGACT+AGG + chr1_3:8932700-8932719 None:intergenic 40.0%
ACTTGACACAACAACTGAGA+TGG + chr1_3:8932709-8932728 None:intergenic 40.0%
!! GTTTTGATGATAGGCTGACA+AGG - chr1_3:8932844-8932863 Msa0102240:CDS 40.0%
AGCTTACAGAATTCAGTGGT+TGG + chr1_3:8932901-8932920 None:intergenic 40.0%
GTGTTTCCAGTATCTGAGTT+TGG - chr1_3:8933030-8933049 Msa0102240:CDS 40.0%
! CTATATAGCCTTACCAATGG+AGG + chr1_3:8933168-8933187 None:intergenic 40.0%
! GTGCTATATAGCCTTACCAA+TGG + chr1_3:8933171-8933190 None:intergenic 40.0%
!! ACAACTAGTTCTTGAGTTGG+GGG + chr1_3:8933277-8933296 None:intergenic 40.0%
! CGAACAACTAGTTCTTGAGT+TGG + chr1_3:8933280-8933299 None:intergenic 40.0%
ACATTTCGACATATCTACCG+AGG - chr1_3:8933322-8933341 Msa0102240:CDS 40.0%
TGCAGAAAATATCCTCACCT+CGG + chr1_3:8933342-8933361 None:intergenic 40.0%
TGTAAGGATCTAACACGATC+AGG + chr1_3:8933680-8933699 None:intergenic 40.0%
!! GTTTGTTTGTCGGCTCAAAA+AGG - chr1_3:8933761-8933780 Msa0102240:intron 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG + chr1_3:8934155-8934174 None:intergenic 40.0%
! GATTTTCTGTATTTGGCCAG+TGG + chr1_3:8934375-8934394 None:intergenic 40.0%
TCAGTGATGTCGATCCTTTA+AGG - chr1_3:8934588-8934607 Msa0102240:intron 40.0%
ATATTTCGCCACTTAGAACC+AGG + chr1_3:8934617-8934636 None:intergenic 40.0%
AAGTGGCGAAATATTCAGGT+AGG - chr1_3:8934623-8934642 Msa0102240:intron 40.0%
ACCATTCGCGACTAATTGTA+TGG - chr1_3:8934678-8934697 Msa0102240:intron 40.0%
ACCATACAATTAGTCGCGAA+TGG + chr1_3:8934682-8934701 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+CGG - chr1_3:8934812-8934831 Msa0102240:intron 40.0%
GTGTGGTGATAAGCAAAATC+GGG - chr1_3:8934813-8934832 Msa0102240:intron 40.0%
!! AGCAAAATCGGGTTAGTGTT+TGG - chr1_3:8934824-8934843 Msa0102240:intron 40.0%
!! GCAAAATCGGGTTAGTGTTT+GGG - chr1_3:8934825-8934844 Msa0102240:intron 40.0%
GGAAAGATGAAAAGGCTTTC+TGG + chr1_3:8934862-8934881 None:intergenic 40.0%
! TCCACTGTTCCTTCATTTTC+GGG + chr1_3:8935059-8935078 None:intergenic 40.0%
! CTCCACTGTTCCTTCATTTT+CGG + chr1_3:8935060-8935079 None:intergenic 40.0%
! TCTTGCAAGGGAACTCTTTT+AGG + chr1_3:8935197-8935216 None:intergenic 40.0%
GTGGACTTCATATCTTGCAA+GGG + chr1_3:8935209-8935228 None:intergenic 40.0%
TGTGGACTTCATATCTTGCA+AGG + chr1_3:8935210-8935229 None:intergenic 40.0%
TGGATTCTCTATAACCTGTG+TGG + chr1_3:8935228-8935247 None:intergenic 40.0%
! GTGCTTGAAAGGTGAACTTT+TGG + chr1_3:8935248-8935267 None:intergenic 40.0%
GGGAAGTCAAACATATGATC+AGG + chr1_3:8935386-8935405 None:intergenic 40.0%
GAACTAGTATGAGCGAGTAA+TGG + chr1_3:8935497-8935516 None:intergenic 40.0%
TGGAGCATGTCAATCATTTG+AGG + chr1_3:8935563-8935582 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+GGG + chr1_3:8935677-8935696 None:intergenic 40.0%
!! TTGGTTCATTGAAGGTATCG+AGG + chr1_3:8935678-8935697 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG + chr1_3:8935686-8935705 None:intergenic 40.0%
CTTCAATGAACCAAGAAGTG+TGG - chr1_3:8935684-8935703 Msa0102240:intron 40.0%
AGTAGAAGGATCAACCATAG+TGG + chr1_3:8935810-8935829 None:intergenic 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG + chr1_3:8935840-8935859 None:intergenic 40.0%
! TAGCAGAAGTAATCTGAGAC+TGG + chr1_3:8935931-8935950 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG + chr1_3:8936272-8936291 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+CGG - chr1_3:8936306-8936325 Msa0102240:CDS 40.0%
GATCTTGTGTAGGGAATTTG+TGG - chr1_3:8936524-8936543 Msa0102240:intron 40.0%
TCTTGTGTAGGGAATTTGTG+GGG - chr1_3:8936526-8936545 Msa0102240:intron 40.0%
TATGGACCAAACAAACCTTC+AGG - chr1_3:8936749-8936768 Msa0102240:intron 40.0%
ATGGACCAAACAAACCTTCA+GGG - chr1_3:8936750-8936769 Msa0102240:intron 40.0%
ACTCTACAACCAAAGCCAAT+AGG - chr1_3:8936968-8936987 Msa0102240:five_prime_UTR 40.0%
!! TCTTCACTTCCTATTGGCTT+TGG + chr1_3:8936980-8936999 None:intergenic 40.0%
TCAGAGTGTGATGTGATGAG+TGG - chr1_3:8931600-8931619 Msa0102240:three_prime_UTR 45.0%
GAGTGGTTTCACTCAAAGGT+TGG - chr1_3:8931617-8931636 Msa0102240:three_prime_UTR 45.0%
GTCAATGCAACTAAATGGGG+TGG - chr1_3:8931974-8931993 Msa0102240:intron 45.0%
GAATTATGGCATGCTTGTGC+TGG - chr1_3:8932380-8932399 Msa0102240:intron 45.0%
CTTGAGGCAATGACACAAGA+GGG + chr1_3:8932406-8932425 None:intergenic 45.0%
ACTTGAGGCAATGACACAAG+AGG + chr1_3:8932407-8932426 None:intergenic 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG - chr1_3:8932406-8932425 Msa0102240:CDS 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG - chr1_3:8932407-8932426 Msa0102240:CDS 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG - chr1_3:8932408-8932427 Msa0102240:CDS 45.0%
CCTGTTCACTATGTCCTTGA+GGG + chr1_3:8932451-8932470 None:intergenic 45.0%
ACCTGTTCACTATGTCCTTG+AGG + chr1_3:8932452-8932471 None:intergenic 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG + chr1_3:8932680-8932699 None:intergenic 45.0%
GATGGAAGACTAGGGTAGTT+TGG + chr1_3:8932691-8932710 None:intergenic 45.0%
GCTAGTGATACTAGCACACA+TGG - chr1_3:8933102-8933121 Msa0102240:CDS 45.0%
AGTGATACTAGCACACATGG+TGG - chr1_3:8933105-8933124 Msa0102240:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG - chr1_3:8933113-8933132 Msa0102240:CDS 45.0%
! GGAAAAGCTGTTTCCTCCAT+TGG - chr1_3:8933152-8933171 Msa0102240:CDS 45.0%
! AGCTGTTTCCTCCATTGGTA+AGG - chr1_3:8933157-8933176 Msa0102240:CDS 45.0%
! TTGGTTGCGTCCCTCTTTTA+TGG - chr1_3:8933194-8933213 Msa0102240:CDS 45.0%
GTCTGACGCATATCATACAC+CGG + chr1_3:8933408-8933427 None:intergenic 45.0%
!!! ATCGGTGTCGGTTTTATGTG+TGG - chr1_3:8933473-8933492 Msa0102240:intron 45.0%
!! GTTGTGAGAAGGTGTCTCTT+CGG + chr1_3:8933733-8933752 None:intergenic 45.0%
GAAGAGACACCTTCTCACAA+CGG - chr1_3:8933732-8933751 Msa0102240:intron 45.0%
AAGAGACACCTTCTCACAAC+GGG - chr1_3:8933733-8933752 Msa0102240:intron 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG - chr1_3:8933751-8933770 Msa0102240:intron 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG - chr1_3:8933772-8933791 Msa0102240:intron 45.0%
TCTGCTGATAGCATGCACAT+TGG - chr1_3:8934167-8934186 Msa0102240:intron 45.0%
TATTTGCAGGGCATGTCCTT+CGG - chr1_3:8934338-8934357 Msa0102240:CDS 45.0%
CAAATCTCATGCCAGCTGAA+AGG + chr1_3:8934413-8934432 None:intergenic 45.0%
CTTTCAGCTGGCATGAGATT+TGG - chr1_3:8934411-8934430 Msa0102240:intron 45.0%
! TGGTATGATGTTTGAGACCG+AGG - chr1_3:8934431-8934450 Msa0102240:intron 45.0%
! GATGTTTGAGACCGAGGAAT+CGG - chr1_3:8934437-8934456 Msa0102240:intron 45.0%
! ATGTTTGAGACCGAGGAATC+GGG - chr1_3:8934438-8934457 Msa0102240:intron 45.0%
! GTGATGTCGATCCTTTAAGG+TGG - chr1_3:8934591-8934610 Msa0102240:intron 45.0%
TTAGAACCAGGCCACCTTAA+AGG + chr1_3:8934605-8934624 None:intergenic 45.0%
! TTTTGCTTATCACCACACCC+TGG + chr1_3:8934811-8934830 None:intergenic 45.0%
CCCAAATATCCGGATTGCAA+CGG + chr1_3:8934910-8934929 None:intergenic 45.0%
CCGTTGCAATCCGGATATTT+GGG - chr1_3:8934907-8934926 Msa0102240:intron 45.0%
GTCTTGTACTTGCTCACTAG+TGG - chr1_3:8934967-8934986 Msa0102240:intron 45.0%
ACCCGAAAATGAAGGAACAG+TGG - chr1_3:8935055-8935074 Msa0102240:intron 45.0%
! CCATTGTTGTTGATCACCTG+TGG + chr1_3:8935140-8935159 None:intergenic 45.0%
CCACAGGTGATCAACAACAA+TGG - chr1_3:8935137-8935156 Msa0102240:intron 45.0%
GCAAGATATGAAGTCCACAC+AGG - chr1_3:8935211-8935230 Msa0102240:CDS 45.0%
GTATGCTCTCTGTGCTTGAA+AGG + chr1_3:8935259-8935278 None:intergenic 45.0%
CATTCGTCTACGTCTATCTG+CGG + chr1_3:8935617-8935636 None:intergenic 45.0%
ATCGAGGGATTCACTACTTG+AGG + chr1_3:8935662-8935681 None:intergenic 45.0%
TGCCAACCATGCAATCTTGA+GGG + chr1_3:8935886-8935905 None:intergenic 45.0%
TTGCCAACCATGCAATCTTG+AGG + chr1_3:8935887-8935906 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG + chr1_3:8935972-8935991 None:intergenic 45.0%
! TTTTCTCTGCGAGACAACTC+TGG - chr1_3:8935971-8935990 Msa0102240:intron 45.0%
ACCAATCCGAACCTACACAA+AGG - chr1_3:8936072-8936091 Msa0102240:CDS 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG + chr1_3:8936076-8936095 None:intergenic 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG - chr1_3:8936201-8936220 Msa0102240:intron 45.0%
CGCGCAATTGAATGCATGTT+TGG - chr1_3:8936270-8936289 Msa0102240:intron 45.0%
! GAATGCATGTTTGGACTGGA+CGG - chr1_3:8936279-8936298 Msa0102240:CDS 45.0%
GGTCTGCTGAATGACACAAA+AGG - chr1_3:8936300-8936319 Msa0102240:CDS 45.0%
ATGACACAAAAGGTTCCGGA+TGG - chr1_3:8936310-8936329 Msa0102240:CDS 45.0%
GAGAGTGATGTTCTGCTAGT+TGG - chr1_3:8936354-8936373 Msa0102240:CDS 45.0%
TGCTAGTTGGAGATGATCCT+TGG - chr1_3:8936367-8936386 Msa0102240:exon 45.0%
GCTAGTTGGAGATGATCCTT+GGG - chr1_3:8936368-8936387 Msa0102240:exon 45.0%
CCTTCATTTGGGAATGGGAT+CGG - chr1_3:8936714-8936733 Msa0102240:intron 45.0%
TGGGAATGGGATCGGAATAT+TGG - chr1_3:8936722-8936741 Msa0102240:intron 45.0%
TGGACCAAACAAACCTTCAG+GGG - chr1_3:8936751-8936770 Msa0102240:intron 45.0%
! AGTGTTGGAGGAGTTGTTGG+TGG - chr1_3:8932153-8932172 Msa0102240:CDS 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG - chr1_3:8932409-8932428 Msa0102240:CDS 50.0%
CCCTCAAGGACATAGTGAAC+AGG - chr1_3:8932448-8932467 Msa0102240:CDS 50.0%
TCGACATATCTACCGAGGTG+AGG - chr1_3:8933327-8933346 Msa0102240:CDS 50.0%
AACTCCAACCCGTTGTGAGA+AGG + chr1_3:8933744-8933763 None:intergenic 50.0%
GAGAAGTCGCAATTGCGAGT+TGG - chr1_3:8934095-8934114 Msa0102240:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG - chr1_3:8934102-8934121 Msa0102240:CDS 50.0%
TCGATTAGCAGCTGCATGAG+CGG + chr1_3:8934207-8934226 None:intergenic 50.0%
TATGGGACTCACCTTTCAGC+TGG - chr1_3:8934399-8934418 Msa0102240:intron 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG - chr1_3:8934606-8934625 Msa0102240:intron 50.0%
CTAAAACGGCCGTTGCAATC+CGG - chr1_3:8934898-8934917 Msa0102240:intron 50.0%
GCCGTTGCAATCCGGATATT+TGG - chr1_3:8934906-8934925 Msa0102240:intron 50.0%
! GCGATAGGCAGCAACTTTTC+CGG + chr1_3:8935326-8935345 None:intergenic 50.0%
TCTAACTGAGGCTGCTGCAT+TGG + chr1_3:8935524-8935543 None:intergenic 50.0%
CGCAGATAGACGTAGACGAA+TGG - chr1_3:8935615-8935634 Msa0102240:CDS 50.0%
TCAGCACCCTCAAGATTGCA+TGG - chr1_3:8935877-8935896 Msa0102240:intron 50.0%
CACCCTCAAGATTGCATGGT+TGG - chr1_3:8935881-8935900 Msa0102240:intron 50.0%
GTGTGACAGGTGCAAAAAGC+AGG - chr1_3:8936192-8936211 Msa0102240:intron 50.0%
GGGTGAGAAACTTACTCCCA+AGG + chr1_3:8936387-8936406 None:intergenic 50.0%
GGGATGAAGCTTCTGAACAG+CGG - chr1_3:8936606-8936625 Msa0102240:intron 50.0%
CCGATCCCATTCCCAAATGA+AGG + chr1_3:8936717-8936736 None:intergenic 50.0%
GGACCAAACAAACCTTCAGG+GGG - chr1_3:8936752-8936771 Msa0102240:intron 50.0%
GACCAAACAAACCTTCAGGG+GGG - chr1_3:8936753-8936772 Msa0102240:intron 50.0%
! ATCCCCCCTGAAGGTTTGTT+TGG + chr1_3:8936758-8936777 None:intergenic 50.0%
! GTGTCATTGCCTCAAGTGGG+GGG - chr1_3:8932410-8932429 Msa0102240:CDS 55.0%
TAGACAAGACCCCCCACTTG+AGG + chr1_3:8932422-8932441 None:intergenic 55.0%
GACACCTTCTCACAACGGGT+TGG - chr1_3:8933737-8933756 Msa0102240:intron 55.0%
!! GTCGATCCTTTAAGGTGGCC+TGG - chr1_3:8934596-8934615 Msa0102240:intron 55.0%
AGGCTGAATGGGATGAGCCA+GGG - chr1_3:8934791-8934810 Msa0102240:intron 55.0%
!! CGGATTGCAACGGCCGTTTT+AGG + chr1_3:8934900-8934919 None:intergenic 55.0%
TCTCTGCGAGACAACTCTGG+TGG - chr1_3:8935974-8935993 Msa0102240:intron 55.0%
GTGTCTGTGGTCTGTGTGAC+AGG - chr1_3:8936179-8936198 Msa0102240:intron 55.0%
!! CTGAACAGCGGAGCATTGCA+AGG - chr1_3:8936618-8936637 Msa0102240:intron 55.0%
TAATGGCTCATCCCCCCTGA+AGG + chr1_3:8936767-8936786 None:intergenic 55.0%
TTCGGTTCCACGCAGAGCTG+CGG - chr1_3:8933131-8933150 Msa0102240:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG + chr1_3:8933141-8933160 None:intergenic 60.0%
CCTGCGCTTACCCGATTCCT+CGG + chr1_3:8934451-8934470 None:intergenic 60.0%
CAGGCTGAATGGGATGAGCC+AGG - chr1_3:8934790-8934809 Msa0102240:intron 60.0%
GAATGGGATGAGCCAGGGTG+TGG - chr1_3:8934796-8934815 Msa0102240:intron 60.0%
CCGAGGAATCGGGTAAGCGC+AGG - chr1_3:8934448-8934467 Msa0102240:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8931494 8937005 8931494 ID=Msa0102240;Name=Msa0102240
chr1_3 mRNA 8931494 8937005 8931494 ID=Msa0102240-mRNA-1;Parent=Msa0102240;Name=Msa0102240-mRNA-1;_AED=0.26;_eAED=0.26;_QI=175|1|1|1|0.92|0.86|15|352|863
chr1_3 exon 8931494 8931963 8931494 ID=Msa0102240-mRNA-1:exon:3558;Parent=Msa0102240-mRNA-1
chr1_3 exon 8932108 8932298 8932108 ID=Msa0102240-mRNA-1:exon:3557;Parent=Msa0102240-mRNA-1
chr1_3 exon 8932406 8933487 8932406 ID=Msa0102240-mRNA-1:exon:3556;Parent=Msa0102240-mRNA-1
chr1_3 exon 8933571 8933706 8933571 ID=Msa0102240-mRNA-1:exon:3555;Parent=Msa0102240-mRNA-1
chr1_3 exon 8933859 8933934 8933859 ID=Msa0102240-mRNA-1:exon:3554;Parent=Msa0102240-mRNA-1
chr1_3 exon 8934030 8934152 8934030 ID=Msa0102240-mRNA-1:exon:3553;Parent=Msa0102240-mRNA-1
chr1_3 exon 8934244 8934408 8934244 ID=Msa0102240-mRNA-1:exon:3552;Parent=Msa0102240-mRNA-1
chr1_3 exon 8934684 8934774 8934684 ID=Msa0102240-mRNA-1:exon:3551;Parent=Msa0102240-mRNA-1
chr1_3 exon 8935156 8935240 8935156 ID=Msa0102240-mRNA-1:exon:3550;Parent=Msa0102240-mRNA-1
chr1_3 exon 8935326 8935478 8935326 ID=Msa0102240-mRNA-1:exon:3549;Parent=Msa0102240-mRNA-1
chr1_3 exon 8935586 8935642 8935586 ID=Msa0102240-mRNA-1:exon:3548;Parent=Msa0102240-mRNA-1
chr1_3 exon 8935752 8935850 8935752 ID=Msa0102240-mRNA-1:exon:3547;Parent=Msa0102240-mRNA-1
chr1_3 exon 8936030 8936142 8936030 ID=Msa0102240-mRNA-1:exon:3546;Parent=Msa0102240-mRNA-1
chr1_3 exon 8936271 8936407 8936271 ID=Msa0102240-mRNA-1:exon:3545;Parent=Msa0102240-mRNA-1
chr1_3 exon 8936865 8937005 8936865 ID=Msa0102240-mRNA-1:exon:3544;Parent=Msa0102240-mRNA-1
chr1_3 five_prime_UTR 8936865 8937005 8936865 ID=Msa0102240-mRNA-1:five_prime_utr;Parent=Msa0102240-mRNA-1
chr1_3 five_prime_UTR 8936374 8936407 8936374 ID=Msa0102240-mRNA-1:five_prime_utr;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8936271 8936373 8936271 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8936030 8936142 8936030 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8935752 8935850 8935752 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8935586 8935642 8935586 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8935326 8935478 8935326 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8935156 8935240 8935156 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8934684 8934774 8934684 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8934244 8934408 8934244 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8934030 8934152 8934030 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8933859 8933934 8933859 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8933571 8933706 8933571 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8932406 8933487 8932406 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8932108 8932298 8932108 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 CDS 8931846 8931963 8931846 ID=Msa0102240-mRNA-1:cds;Parent=Msa0102240-mRNA-1
chr1_3 three_prime_UTR 8931494 8931845 8931494 ID=Msa0102240-mRNA-1:three_prime_utr;Parent=Msa0102240-mRNA-1
Gene Sequence

>Msa0102240

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGAAAAAGAAGTGTTTCCAGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACGGCTAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTGTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTAGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTCAGCCGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGGATGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCCGCTCATGCAGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGGCATGTCCTTCGGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGGACTCACCTTTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGGGTTAGTGTTTGGGAGATTGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCCGGATATTTGGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGAAGGAACAGTGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTAAAAGAGTTCCCTTGCAAGATATGAAGTCCACACAGGTTATAGAGAATCCAAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAACACCTTTAACATGCATTCATTGTTGAAAAGTGAGCAACCGGAAAAGTTGCTGCCTATCGCCAAAACCAATAATACAAAATTAGAATCTGAGGTGTTACCTGATCATATGTTTGACTTCCCATCTTTTGAAAGCTGCAACAACATCGAAAAAGTGAATACGGCAAACCAACTAACATATTATAATCAAAACCAAAACCAAACTCAAAATCCATTACTCGCTCATACTAGTTCATCGCCAATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAAATGATTGACATGCTCCAACCCGATTCTTCTATTGTAAACAGCATGATTCCGCAGATAGACGTAGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTCAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTATTAATAGTGTCAGTACCACTATGGTTGATCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAAGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAGCTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGTTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTGCTAGTTGGAGATGATCCTTGGGAGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTGAACAGCGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>Msa0102240

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTHLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENEGTVELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPKRVPLQDMKSTQVIENPKVHLSSTESIPNNTFNMHSLLKSEQPEKLLPIAKTNNTKLESEVLPDHMFDFPSFESCNNIEKVNTANQLTYYNQNQNQTQNPLLAHTSSSPMQQPQLESSMSHPQMIDMLQPDSSIVNSMIPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDAINSVSTTMVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV*