Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196360 | XP_013462769.1 | 98.425 | 381 | 6 | 0 | 1 | 381 | 1 | 381 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196360 | sp|Q4TU14|RHF1A_ARATH | 44.134 | 358 | 141 | 10 | 30 | 358 | 38 | 365 | 2.55e-72 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196360 | A0A072V4R5 | 98.425 | 381 | 6 | 0 | 1 | 381 | 1 | 381 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196360 | Msa0238250 | 0.898978 | 3.122319e-77 | -8.615850e-47 |
| Msa0196360 | Msa0275680 | 0.833063 | 6.613725e-56 | -8.615850e-47 |
| Msa0196360 | Msa0315930 | 0.948355 | 1.112970e-106 | -8.615850e-47 |
| Msa0196360 | Msa0376450 | 0.803144 | 4.009843e-49 | -8.615850e-47 |
| Msa0196360 | Msa0471720 | 0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0196360 | Msa0607340 | 0.809088 | 2.249346e-50 | -8.615850e-47 |
| Msa0196360 | Msa0967650 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196360 | MtrunA17_Chr2g0287991 | 98.425 | 381 | 6 | 0 | 1 | 381 | 1 | 381 | 0.0 | 766 |
| Msa0196360 | MtrunA17_Chr2g0322261 | 38.746 | 351 | 183 | 8 | 32 | 352 | 31 | 379 | 5.63e-59 | 196 |
| Msa0196360 | MtrunA17_Chr7g0267851 | 34.936 | 312 | 150 | 10 | 4 | 286 | 10 | 297 | 1.04e-42 | 151 |
| Msa0196360 | MtrunA17_Chr8g0348651 | 54.167 | 48 | 22 | 0 | 35 | 82 | 137 | 184 | 1.73e-12 | 65.9 |
| Msa0196360 | MtrunA17_Chr8g0387191 | 47.170 | 53 | 28 | 0 | 35 | 87 | 153 | 205 | 7.44e-12 | 64.3 |
| Msa0196360 | MtrunA17_Chr7g0248061 | 52.083 | 48 | 23 | 0 | 35 | 82 | 137 | 184 | 2.40e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196360 | AT4G14220.1 | 44.134 | 358 | 141 | 10 | 30 | 358 | 38 | 365 | 2.59e-73 | 233 |
| Msa0196360 | AT5G22000.2 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.00e-60 | 199 |
| Msa0196360 | AT5G22000.3 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.24e-60 | 199 |
| Msa0196360 | AT5G22000.1 | 43.234 | 303 | 139 | 9 | 32 | 309 | 27 | 321 | 2.24e-60 | 199 |
| Msa0196360 | AT5G22000.4 | 38.372 | 258 | 126 | 9 | 77 | 309 | 1 | 250 | 2.32e-32 | 124 |
| Msa0196360 | AT4G00335.2 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 1.00e-11 | 63.9 |
| Msa0196360 | AT4G00335.1 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 1.00e-11 | 63.9 |
| Msa0196360 | AT4G00335.3 | 47.273 | 55 | 29 | 0 | 32 | 86 | 133 | 187 | 1.00e-11 | 63.9 |
| Msa0196360 | AT5G41350.1 | 45.833 | 48 | 26 | 0 | 35 | 82 | 158 | 205 | 8.47e-11 | 61.6 |
| Msa0196360 | AT5G41350.3 | 45.833 | 48 | 26 | 0 | 35 | 82 | 158 | 205 | 8.47e-11 | 61.6 |
| Msa0196360 | AT5G41350.2 | 45.833 | 48 | 26 | 0 | 35 | 82 | 183 | 230 | 9.44e-11 | 62.0 |
Find 119 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATAATTTACTTGATTT+TGG | 0.079977 | 2_1:-13534677 | Msa0196360:three_prime_UTR |
| AACTCTTCTGGGCCTGTATC+TGG | 0.093435 | 2_1:-13536627 | Msa0196360:CDS |
| GAGCCAGTAACTTCTCTTTA+AGG | 0.167971 | 2_1:+13535815 | None:intergenic |
| ATATGCTTTATTTCTTTGTT+AGG | 0.262791 | 2_1:-13538673 | Msa0196360:five_prime_UTR |
| CTCTAATTCCTGTCCGTAAT+GGG | 0.265206 | 2_1:-13535675 | Msa0196360:CDS |
| AATTTATTTAGGCCAATTTC+AGG | 0.278253 | 2_1:-13534604 | Msa0196360:three_prime_UTR |
| CTAAAACAGTAGCCTGAAAT+TGG | 0.301994 | 2_1:+13534592 | None:intergenic |
| AGCAGAAAATTTAGATTTGA+AGG | 0.325081 | 2_1:+13535965 | None:intergenic |
| CTGAGGTTGATGTCCCTTAC+AGG | 0.328512 | 2_1:-13536500 | Msa0196360:CDS |
| TAATTCTTGCAACAGATATA+AGG | 0.332956 | 2_1:-13535863 | Msa0196360:intron |
| TCCTCTCTACATGTCAATAC+TGG | 0.336210 | 2_1:-13534710 | Msa0196360:three_prime_UTR |
| GAAAGCGATTGCCAACATAT+TGG | 0.359019 | 2_1:+13537140 | None:intergenic |
| TTTAGTTTCCTCTCATCCTT+AGG | 0.365277 | 2_1:+13536017 | None:intergenic |
| AATCAGTACCTTGGCCTGTA+AGG | 0.372499 | 2_1:+13536486 | None:intergenic |
| CCTCTAATTCCTGTCCGTAA+TGG | 0.378043 | 2_1:-13535676 | Msa0196360:CDS |
| AAAGCGATTGCCAACATATT+GGG | 0.384600 | 2_1:+13537141 | None:intergenic |
| CTATGCTGACTTGTTCAAAA+AGG | 0.387482 | 2_1:-13534876 | Msa0196360:three_prime_UTR |
| GCCTTGATCTTGCCTCAAAA+AGG | 0.392265 | 2_1:-13535708 | Msa0196360:CDS |
| TAAATTCCTACTACAAATCA+TGG | 0.392317 | 2_1:+13534789 | None:intergenic |
| AGAGAGAAGGGAGAAAGAAA+AGG | 0.399544 | 2_1:+13538595 | None:intergenic |
| CAGAGAAGACAGGGATCGTC+TGG | 0.403840 | 2_1:-13536678 | Msa0196360:CDS |
| CTCTCATCCTTAGGTGGTGA+TGG | 0.404554 | 2_1:+13536026 | None:intergenic |
| CATCTTCACTCACTAATTCT+CGG | 0.418524 | 2_1:-13536941 | Msa0196360:CDS |
| GAGAGAAGGGAGAAAGAAAA+GGG | 0.423480 | 2_1:+13538596 | None:intergenic |
| AGGTGAAAGTAGCCATGGTT+AGG | 0.423647 | 2_1:+13538531 | None:intergenic |
| ACTCTTCTGGGCCTGTATCT+GGG | 0.428779 | 2_1:-13536626 | Msa0196360:CDS |
| TGGCCTTAAAGAGAAGTTAC+TGG | 0.429545 | 2_1:-13535818 | Msa0196360:CDS |
| CCATTACGGACAGGAATTAG+AGG | 0.430973 | 2_1:+13535676 | None:intergenic |
| GGAAATTCCTCCATATGTTC+AGG | 0.432060 | 2_1:-13535530 | Msa0196360:intron |
| TAACAAAGAAATAAAGCATA+TGG | 0.436058 | 2_1:+13538675 | None:intergenic |
| AAGATGAAACATACAGTTGA+TGG | 0.442023 | 2_1:+13538377 | None:intergenic |
| CTCTTCAACAGACTTCCCTT+CGG | 0.442480 | 2_1:+13535636 | None:intergenic |
| ACCTGCATTGCATTCTTGAA+TGG | 0.443529 | 2_1:-13537263 | Msa0196360:intron |
| GAGATGAATGCTGGCATAGC+TGG | 0.452625 | 2_1:-13535751 | Msa0196360:CDS |
| GGACGAGCGTTGGCAGTTGA+TGG | 0.452688 | 2_1:+13536546 | None:intergenic |
| GTTGATTGCATCCCAGATAC+AGG | 0.453284 | 2_1:+13536615 | None:intergenic |
| ATCTTCACTCACTAATTCTC+GGG | 0.453331 | 2_1:-13536940 | Msa0196360:CDS |
| GAAGAGGATGGAGCTGAGAA+AGG | 0.454590 | 2_1:+13538470 | None:intergenic |
| GTCGGTGAGCTACCGCCAAC+TGG | 0.458070 | 2_1:+13536579 | None:intergenic |
| CTCTACTTGCAGCGGCATAT+AGG | 0.463448 | 2_1:+13536718 | None:intergenic |
| TGATGATGATGGAGAAGAGA+AGG | 0.464602 | 2_1:+13538508 | None:intergenic |
| TTTCTTTGAAAGACCCTGCC+TGG | 0.468531 | 2_1:-13537121 | Msa0196360:intron |
| AGCTGAGAAAGGAGGAGGAG+TGG | 0.468770 | 2_1:+13538481 | None:intergenic |
| GATGGACTAACCTGAACATA+TGG | 0.471478 | 2_1:+13535520 | None:intergenic |
| ATCTCATCACACGTCTGAAT+CGG | 0.477572 | 2_1:-13538624 | Msa0196360:five_prime_UTR |
| AAATTTAGATTTGAAGGACT+CGG | 0.485514 | 2_1:+13535971 | None:intergenic |
| GTACTAAATCCTTGCAAAGT+AGG | 0.488402 | 2_1:+13534503 | None:intergenic |
| GATGGAGCTGAGAAAGGAGG+AGG | 0.494226 | 2_1:+13538476 | None:intergenic |
| TTAGGTGAGAACTGAGGAAG+TGG | 0.495917 | 2_1:+13538555 | None:intergenic |
| TGTTCAGAGACAGAGAAGAC+AGG | 0.496007 | 2_1:-13536688 | Msa0196360:CDS |
| CAAATAAACATATACCAGGC+AGG | 0.496575 | 2_1:+13537107 | None:intergenic |
| TGAATAAGAAGAAAGAGAGA+AGG | 0.496936 | 2_1:+13538582 | None:intergenic |
| GAGGATGGAGCTGAGAAAGG+AGG | 0.499832 | 2_1:+13538473 | None:intergenic |
| AAGTAGCCATGGTTAGGGTT+AGG | 0.500621 | 2_1:+13538537 | None:intergenic |
| AATGCTCCATGATTTGTAGT+AGG | 0.501923 | 2_1:-13534795 | Msa0196360:three_prime_UTR |
| TTACAGTCCATCACCACCTA+AGG | 0.512771 | 2_1:-13536033 | Msa0196360:CDS |
| AATTTAGATTTGAAGGACTC+GGG | 0.514225 | 2_1:+13535972 | None:intergenic |
| AGACAGGGATCGTCTGGAGC+AGG | 0.517977 | 2_1:-13536672 | Msa0196360:CDS |
| CTAGTGTTTCTTGCAACCTC+AGG | 0.518593 | 2_1:+13536525 | None:intergenic |
| GAATAAGAAGAAAGAGAGAA+GGG | 0.518676 | 2_1:+13538583 | None:intergenic |
| ACCATTCAAGAATGCAATGC+AGG | 0.523952 | 2_1:+13537262 | None:intergenic |
| TGAACCTCACCTACTTTGCA+AGG | 0.534145 | 2_1:-13534512 | Msa0196360:three_prime_UTR |
| ATCAAAATCAATTTCATCTG+AGG | 0.534385 | 2_1:+13536758 | None:intergenic |
| AGATTTGAAGGACTCGGGAA+AGG | 0.536774 | 2_1:+13535977 | None:intergenic |
| GCAAAGAGTGCCCAATATGT+TGG | 0.538649 | 2_1:-13537151 | Msa0196360:CDS |
| AGTTTCCTCTCATCCTTAGG+TGG | 0.539896 | 2_1:+13536020 | None:intergenic |
| ATCATCAAAAGCTGAAGAAG+AGG | 0.541296 | 2_1:+13538454 | None:intergenic |
| TCTGTTGAAGAGAAAGACAC+TGG | 0.543702 | 2_1:-13535625 | Msa0196360:CDS |
| GGTGAAAGTAGCCATGGTTA+GGG | 0.547953 | 2_1:+13538532 | None:intergenic |
| TTGAAAACAAGAATCTCTGA+TGG | 0.551136 | 2_1:+13536648 | None:intergenic |
| GTTCAGAGACAGAGAAGACA+GGG | 0.552538 | 2_1:-13536687 | Msa0196360:CDS |
| TAGCACTGTTGCTAGTCGAA+TGG | 0.553644 | 2_1:-13535551 | Msa0196360:CDS |
| CCACAGCGTCAAGAAGCTCT+TGG | 0.555254 | 2_1:+13537000 | None:intergenic |
| ACAGTAAAAGAGCTGAGTAA+AGG | 0.560131 | 2_1:-13535784 | Msa0196360:CDS |
| AAAGGTGCAAGAGACGACTT+TGG | 0.562692 | 2_1:-13534858 | Msa0196360:three_prime_UTR |
| TCACCATTAGAATATCCAAA+GGG | 0.563103 | 2_1:+13536915 | None:intergenic |
| TGGAGCATTGATAACAATGC+AGG | 0.563861 | 2_1:+13534809 | None:intergenic |
| AACTGCCAACGCTCGTCCTG+AGG | 0.563873 | 2_1:-13536541 | Msa0196360:CDS |
| ATCAGTACCTTGGCCTGTAA+GGG | 0.570690 | 2_1:+13536487 | None:intergenic |
| CTTACAACTTCACCAGTTGG+CGG | 0.573253 | 2_1:-13536591 | Msa0196360:CDS |
| TGATGATGGAGAAGAGAAGG+AGG | 0.574257 | 2_1:+13538511 | None:intergenic |
| GAAGGAGGTGAAAGTAGCCA+TGG | 0.575347 | 2_1:+13538526 | None:intergenic |
| AGAGCTTCTTGACGCTGTGG+AGG | 0.581549 | 2_1:-13536997 | Msa0196360:CDS |
| GGAGTGGAAGATGATGATGA+TGG | 0.581573 | 2_1:+13538497 | None:intergenic |
| TCTAATTCCTGTCCGTAATG+GGG | 0.587637 | 2_1:-13535674 | Msa0196360:CDS |
| CTGTAAGGGACATCAACCTC+AGG | 0.588123 | 2_1:+13536501 | None:intergenic |
| ACGCATACCAACATGTGCAT+TGG | 0.588346 | 2_1:+13534832 | None:intergenic |
| AGATGAAACATACAGTTGAT+GGG | 0.591088 | 2_1:+13538378 | None:intergenic |
| ACACTTACAACTTCACCAGT+TGG | 0.591557 | 2_1:-13536594 | Msa0196360:CDS |
| TTGATGTCCCTTACAGGCCA+AGG | 0.595595 | 2_1:-13536494 | Msa0196360:intron |
| CTAATTCCTGTCCGTAATGG+GGG | 0.595714 | 2_1:-13535673 | Msa0196360:CDS |
| AATTCTAAAACTGAAGCAAG+TGG | 0.605650 | 2_1:-13535601 | Msa0196360:CDS |
| CCAAGAGCTTCTTGACGCTG+TGG | 0.605864 | 2_1:-13537000 | Msa0196360:CDS |
| GTTCAACGTGAGATGAATGC+TGG | 0.607319 | 2_1:-13535760 | Msa0196360:CDS |
| TGCAACCTCAGGACGAGCGT+TGG | 0.607887 | 2_1:+13536536 | None:intergenic |
| ATCACCATTAGAATATCCAA+AGG | 0.608593 | 2_1:+13536914 | None:intergenic |
| TCAAAAGCTGAAGAAGAGGA+TGG | 0.610945 | 2_1:+13538458 | None:intergenic |
| AAATAAACATATACCAGGCA+GGG | 0.612594 | 2_1:+13537108 | None:intergenic |
| TCAATTTCTAAAAGTACTCG+TGG | 0.615408 | 2_1:-13535838 | Msa0196360:CDS |
| AAATCCTTGCAAAGTAGGTG+AGG | 0.624918 | 2_1:+13534508 | None:intergenic |
| GGCAGTTGATGGTAGATCAG+TGG | 0.627162 | 2_1:+13536557 | None:intergenic |
| TCCAGTATTGACATGTAGAG+AGG | 0.628190 | 2_1:+13534709 | None:intergenic |
| CATCACCACCTAAGGATGAG+AGG | 0.629698 | 2_1:-13536025 | Msa0196360:CDS |
| ACAGTGCTAGAAATGTGTGA+GGG | 0.630970 | 2_1:+13535565 | None:intergenic |
| CTGTTGAAGAGAAAGACACT+GGG | 0.636117 | 2_1:-13535624 | Msa0196360:CDS |
| AACAGTGCTAGAAATGTGTG+AGG | 0.645291 | 2_1:+13535564 | None:intergenic |
| GGACTAACCTGAACATATGG+AGG | 0.649006 | 2_1:+13535523 | None:intergenic |
| AAAACGAGCTCTACTTGCAG+CGG | 0.654386 | 2_1:+13536710 | None:intergenic |
| TTGGTGACCAATGCACATGT+TGG | 0.660739 | 2_1:-13534839 | Msa0196360:three_prime_UTR |
| GATCAATTTATAGAGCTCAG+TGG | 0.663393 | 2_1:-13534756 | Msa0196360:three_prime_UTR |
| CAGTGCTAGAAATGTGTGAG+GGG | 0.664316 | 2_1:+13535566 | None:intergenic |
| ACCATTAGAATATCCAAAGG+GGG | 0.670624 | 2_1:+13536917 | None:intergenic |
| TGCAAGAAACACTAGTCCTG+AGG | 0.676328 | 2_1:-13536517 | Msa0196360:CDS |
| GTTGATGGTAGATCAGTGGT+CGG | 0.680474 | 2_1:+13536561 | None:intergenic |
| AGTGCTAGAAATGTGTGAGG+GGG | 0.683784 | 2_1:+13535567 | None:intergenic |
| TTAGGGTTAGGTGAGAACTG+AGG | 0.689355 | 2_1:+13538549 | None:intergenic |
| GTAGAGAGGAACAATAACCA+TGG | 0.693467 | 2_1:+13534723 | None:intergenic |
| TTCTCACCTAACCCTAACCA+TGG | 0.704621 | 2_1:-13538543 | Msa0196360:exon |
| CACCATTAGAATATCCAAAG+GGG | 0.704628 | 2_1:+13536916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAATAAATTTTTATGTG+TGG | - | chr2_1:13535585-13535604 | Msa0196360:CDS | 15.0% |
| !!! | ACATAAATTGTTTTTTCTTT+AGG | - | chr2_1:13535964-13535983 | Msa0196360:CDS | 15.0% |
| !! | TTGTAACTTATATATATTCA+GGG | + | chr2_1:13536828-13536847 | None:intergenic | 15.0% |
| !! | TTTGTAACTTATATATATTC+AGG | + | chr2_1:13536829-13536848 | None:intergenic | 15.0% |
| !!! | AAAACCCTATAATTTTAATA+TGG | - | chr2_1:13537840-13537859 | Msa0196360:intron | 15.0% |
| !! | GATACCATATTAAAATTATA+GGG | + | chr2_1:13537847-13537866 | None:intergenic | 15.0% |
| !! | TGATACCATATTAAAATTAT+AGG | + | chr2_1:13537848-13537867 | None:intergenic | 15.0% |
| !!! | TGAAATAATTTACTTGATTT+TGG | - | chr2_1:13538471-13538490 | Msa0196360:CDS | 15.0% |
| !! | TAACAAAGAAATAAAGCATA+TGG | + | chr2_1:13534476-13534495 | None:intergenic | 20.0% |
| !!! | ATATGCTTTATTTCTTTGTT+AGG | - | chr2_1:13534475-13534494 | Msa0196360:three_prime_UTR | 20.0% |
| !!! | TTTTTTTCAGTTTTTGCATT+TGG | - | chr2_1:13534800-13534819 | Msa0196360:three_prime_UTR | 20.0% |
| !!! | TTTTTTCAGTTTTTGCATTT+GGG | - | chr2_1:13534801-13534820 | Msa0196360:three_prime_UTR | 20.0% |
| !!! | AATTTTTTGTTGAGAAATGT+GGG | - | chr2_1:13534957-13534976 | Msa0196360:intron | 20.0% |
| !!! | TGAATTTGCTTAAAATTTCA+AGG | - | chr2_1:13535059-13535078 | Msa0196360:intron | 20.0% |
| !!! | TCTGTATTGATACAAATATT+GGG | - | chr2_1:13535148-13535167 | Msa0196360:intron | 20.0% |
| !!! | ATATGTTACGTTTTAATTTC+AGG | - | chr2_1:13535838-13535857 | Msa0196360:CDS | 20.0% |
| !! | TTTCTTGTGTTAAAATTTGT+TGG | - | chr2_1:13536290-13536309 | Msa0196360:intron | 20.0% |
| !!! | TTACGAGTAAAAAGTTATTT+TGG | - | chr2_1:13536763-13536782 | Msa0196360:CDS | 20.0% |
| !! | TTAACATATGAAACATTAGT+AGG | + | chr2_1:13537067-13537086 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAGTTTGATAGA+TGG | + | chr2_1:13537655-13537674 | None:intergenic | 20.0% |
| !!! | TATGTGATACTTTTATTTCT+AGG | - | chr2_1:13537708-13537727 | Msa0196360:intron | 20.0% |
| !! | ATATTGTCAACTAAAAAATC+TGG | - | chr2_1:13537948-13537967 | Msa0196360:intron | 20.0% |
| !!! | TAATAGAATAAGTTTGTTTG+CGG | - | chr2_1:13537979-13537998 | Msa0196360:intron | 20.0% |
| !!! | TGTTGTCAACTATTTTTTTT+GGG | + | chr2_1:13538114-13538133 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAACTATTTTTTT+TGG | + | chr2_1:13538115-13538134 | None:intergenic | 20.0% |
| !!! | AATAATTTACTTGATTTTGG+AGG | - | chr2_1:13538474-13538493 | Msa0196360:CDS | 20.0% |
| ! | AATTTGATGTGTGTTTATGA+TGG | - | chr2_1:13534928-13534947 | Msa0196360:intron | 25.0% |
| !!! | CAATTTTTTGTTGAGAAATG+TGG | - | chr2_1:13534956-13534975 | Msa0196360:intron | 25.0% |
| !! | TTTGGCGTGATTTAAATTTT+GGG | - | chr2_1:13534980-13534999 | Msa0196360:intron | 25.0% |
| !!! | TGTTTTTACCTTGATTTTTG+TGG | - | chr2_1:13535015-13535034 | Msa0196360:intron | 25.0% |
| !! | GTCTGTATTGATACAAATAT+TGG | - | chr2_1:13535147-13535166 | Msa0196360:intron | 25.0% |
| ! | GTGCTTATTTAATCATCATA+AGG | - | chr2_1:13535203-13535222 | Msa0196360:intron | 25.0% |
| ! | TTTAATCATCATAAGGAATC+AGG | - | chr2_1:13535210-13535229 | Msa0196360:intron | 25.0% |
| ! | TTAATCATCATAAGGAATCA+GGG | - | chr2_1:13535211-13535230 | Msa0196360:intron | 25.0% |
| !! | TAAACTTTTATGACACTGTT+TGG | - | chr2_1:13535271-13535290 | Msa0196360:intron | 25.0% |
| !! | AAACTTTTATGACACTGTTT+GGG | - | chr2_1:13535272-13535291 | Msa0196360:intron | 25.0% |
| ! | GTTATATAAGCACTTATGAA+TGG | + | chr2_1:13535437-13535456 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr2_1:13535481-13535500 | Msa0196360:intron | 25.0% |
| !! | TAAATTTTTATGTGTGGATG+AGG | - | chr2_1:13535591-13535610 | Msa0196360:CDS | 25.0% |
| ! | ATAGATAAATATATCGTTGC+GGG | + | chr2_1:13535695-13535714 | None:intergenic | 25.0% |
| ! | GATAGATAAATATATCGTTG+CGG | + | chr2_1:13535696-13535715 | None:intergenic | 25.0% |
| ! | AAACGTAACATATTAACACA+CGG | + | chr2_1:13535831-13535850 | None:intergenic | 25.0% |
| ! | CTAATTCATCAAGCTATATA+AGG | + | chr2_1:13535915-13535934 | None:intergenic | 25.0% |
| ! | TTTGCAAATAAACATATACC+AGG | + | chr2_1:13536048-13536067 | None:intergenic | 25.0% |
| ! | AAAAAGCTTGTATTGAGAAT+GGG | + | chr2_1:13536082-13536101 | None:intergenic | 25.0% |
| ! | TAAAAAGCTTGTATTGAGAA+TGG | + | chr2_1:13536083-13536102 | None:intergenic | 25.0% |
| !! | TTCTCAATACAAGCTTTTTA+TGG | - | chr2_1:13536083-13536102 | Msa0196360:intron | 25.0% |
| ! | TACTATCATTCAATGATTAG+AGG | - | chr2_1:13536342-13536361 | Msa0196360:intron | 25.0% |
| ! | ATCAAAATCAATTTCATCTG+AGG | + | chr2_1:13536393-13536412 | None:intergenic | 25.0% |
| !!! | AGATGAAATTGATTTTGATG+AGG | - | chr2_1:13536394-13536413 | Msa0196360:intron | 25.0% |
| !!! | CTTTTAAGTATAATAAGCAG+TGG | - | chr2_1:13536693-13536712 | Msa0196360:CDS | 25.0% |
| ! | TGATGAATTAAACTGACTAA+TGG | - | chr2_1:13536882-13536901 | Msa0196360:intron | 25.0% |
| !! | TCAAGGATGTTTTGTAATTT+TGG | - | chr2_1:13536976-13536995 | Msa0196360:CDS | 25.0% |
| !! | CAAGGATGTTTTGTAATTTT+GGG | - | chr2_1:13536977-13536996 | Msa0196360:CDS | 25.0% |
| !!! | TTCATATGTTAACTTTTTCC+TGG | - | chr2_1:13537075-13537094 | Msa0196360:intron | 25.0% |
| ! | AAATTTAGATTTGAAGGACT+CGG | + | chr2_1:13537180-13537199 | None:intergenic | 25.0% |
| ! | AGCAGAAAATTTAGATTTGA+AGG | + | chr2_1:13537186-13537205 | None:intergenic | 25.0% |
| ! | TAATTCTTGCAACAGATATA+AGG | - | chr2_1:13537285-13537304 | Msa0196360:CDS | 25.0% |
| ! | ATATGATTTGAATTCCTTCA+CGG | + | chr2_1:13537932-13537951 | None:intergenic | 25.0% |
| ! | AAAGAAAAGAAAAAAACGCT+TGG | - | chr2_1:13538059-13538078 | Msa0196360:intron | 25.0% |
| ! | TAAATTCCTACTACAAATCA+TGG | + | chr2_1:13538362-13538381 | None:intergenic | 25.0% |
| ! | AATTTATTTAGGCCAATTTC+AGG | - | chr2_1:13538544-13538563 | Msa0196360:exon | 25.0% |
| GAATAAGAAGAAAGAGAGAA+GGG | + | chr2_1:13534568-13534587 | None:intergenic | 30.0% | |
| TGAATAAGAAGAAAGAGAGA+AGG | + | chr2_1:13534569-13534588 | None:intergenic | 30.0% | |
| AGATGAAACATACAGTTGAT+GGG | + | chr2_1:13534773-13534792 | None:intergenic | 30.0% | |
| AAGATGAAACATACAGTTGA+TGG | + | chr2_1:13534774-13534793 | None:intergenic | 30.0% | |
| ! | GTTTGGCGTGATTTAAATTT+TGG | - | chr2_1:13534979-13534998 | Msa0196360:intron | 30.0% |
| AACACAAACCACAAAAATCA+AGG | + | chr2_1:13535026-13535045 | None:intergenic | 30.0% | |
| !!! | TTCTGTTTTTGCATAAGCAA+CGG | - | chr2_1:13535181-13535200 | Msa0196360:intron | 30.0% |
| ! | ACTTATTTGAGTTTATCCAC+TGG | - | chr2_1:13535246-13535265 | Msa0196360:intron | 30.0% |
| GTCATAAAAGTTTATACCAG+TGG | + | chr2_1:13535265-13535284 | None:intergenic | 30.0% | |
| ! | AAGCTATTCTAAAGAGCTTA+TGG | + | chr2_1:13535350-13535369 | None:intergenic | 30.0% |
| AAACTTAACCCTGTTATACA+CGG | + | chr2_1:13535644-13535663 | None:intergenic | 30.0% | |
| TAGATAAATATATCGTTGCG+GGG | + | chr2_1:13535694-13535713 | None:intergenic | 30.0% | |
| ! | GTTTAATTATGCCTTTTGTG+AGG | - | chr2_1:13535723-13535742 | Msa0196360:CDS | 30.0% |
| TTGTAACTAATCCTCACAAA+AGG | + | chr2_1:13535737-13535756 | None:intergenic | 30.0% | |
| ATAGCTTGATGAATTAGTCA+TGG | - | chr2_1:13535918-13535937 | Msa0196360:intron | 30.0% | |
| AAATAAACATATACCAGGCA+GGG | + | chr2_1:13536043-13536062 | None:intergenic | 30.0% | |
| ! | CAAGCTTTTTATGGTATGAT+TGG | - | chr2_1:13536092-13536111 | Msa0196360:intron | 30.0% |
| TCACCATTAGAATATCCAAA+GGG | + | chr2_1:13536236-13536255 | None:intergenic | 30.0% | |
| ATCACCATTAGAATATCCAA+AGG | + | chr2_1:13536237-13536256 | None:intergenic | 30.0% | |
| ATAGTATGATACACGTATCA+AGG | + | chr2_1:13536328-13536347 | None:intergenic | 30.0% | |
| TTGAAAACAAGAATCTCTGA+TGG | + | chr2_1:13536503-13536522 | None:intergenic | 30.0% | |
| !!! | ATTCTTGTTTTCAACTCTTC+TGG | - | chr2_1:13536509-13536528 | Msa0196360:CDS | 30.0% |
| !!! | TTCTTGTTTTCAACTCTTCT+GGG | - | chr2_1:13536510-13536529 | Msa0196360:CDS | 30.0% |
| TACTCGTAAGTAAACAATCA+GGG | + | chr2_1:13536752-13536771 | None:intergenic | 30.0% | |
| TTACTCGTAAGTAAACAATC+AGG | + | chr2_1:13536753-13536772 | None:intergenic | 30.0% | |
| TGAATAACAAGAGACATTCA+AGG | - | chr2_1:13536959-13536978 | Msa0196360:CDS | 30.0% | |
| ! | AAATGAGTGAACAGTCATTT+TGG | + | chr2_1:13537043-13537062 | None:intergenic | 30.0% |
| AATTTAGATTTGAAGGACTC+GGG | + | chr2_1:13537179-13537198 | None:intergenic | 30.0% | |
| TAAGATAAGTTAGCAGTGAA+GGG | + | chr2_1:13537261-13537280 | None:intergenic | 30.0% | |
| TTAAGATAAGTTAGCAGTGA+AGG | + | chr2_1:13537262-13537281 | None:intergenic | 30.0% | |
| !! | TCAATTTCTAAAAGTACTCG+TGG | - | chr2_1:13537310-13537329 | Msa0196360:intron | 30.0% |
| !! | AATTCTAAAACTGAAGCAAG+TGG | - | chr2_1:13537547-13537566 | Msa0196360:intron | 30.0% |
| !! | GTTTTAGATAAAGAGAGGAA+AGG | + | chr2_1:13537825-13537844 | None:intergenic | 30.0% |
| !!! | ATAGGGTTTTAGATAAAGAG+AGG | + | chr2_1:13537830-13537849 | None:intergenic | 30.0% |
| ! | ATAAGTTTGTTTGCGGAATT+TGG | - | chr2_1:13537986-13538005 | Msa0196360:intron | 30.0% |
| ! | TAAGTTTGTTTGCGGAATTT+GGG | - | chr2_1:13537987-13538006 | Msa0196360:intron | 30.0% |
| AAAGAAAAAAACGCTTGGAT+TGG | - | chr2_1:13538064-13538083 | Msa0196360:intron | 30.0% | |
| AATACATTCATCACTTCGAA+AGG | + | chr2_1:13538144-13538163 | None:intergenic | 30.0% | |
| !!! | TTACTATTTTGATTCCAGAG+AGG | - | chr2_1:13538217-13538236 | Msa0196360:intron | 30.0% |
| ATCATCAAAAGCTGAAGAAG+AGG | + | chr2_1:13534697-13534716 | None:intergenic | 35.0% | |
| TTTGTTGAGAAATGTGGGTT+TGG | - | chr2_1:13534962-13534981 | Msa0196360:intron | 35.0% | |
| CTCAAATAAGTCATCCAAAC+AGG | + | chr2_1:13535237-13535256 | None:intergenic | 35.0% | |
| TACAACCTGTAGATTACCAA+AGG | - | chr2_1:13535759-13535778 | Msa0196360:CDS | 35.0% | |
| ACAACCTGTAGATTACCAAA+GGG | - | chr2_1:13535760-13535779 | Msa0196360:CDS | 35.0% | |
| !! | TTTTCCCTTTGGTAATCTAC+AGG | + | chr2_1:13535767-13535786 | None:intergenic | 35.0% |
| TAACACACGGTTCAACATTT+AGG | + | chr2_1:13535818-13535837 | None:intergenic | 35.0% | |
| ! | GAATTAGTCATGGATTGTTG+TGG | - | chr2_1:13535928-13535947 | Msa0196360:intron | 35.0% |
| AAAGCGATTGCCAACATATT+GGG | + | chr2_1:13536010-13536029 | None:intergenic | 35.0% | |
| CAAATAAACATATACCAGGC+AGG | + | chr2_1:13536044-13536063 | None:intergenic | 35.0% | |
| CATCTTCACTCACTAATTCT+CGG | - | chr2_1:13536207-13536226 | Msa0196360:intron | 35.0% | |
| ATCTTCACTCACTAATTCTC+GGG | - | chr2_1:13536208-13536227 | Msa0196360:intron | 35.0% | |
| ACCATTAGAATATCCAAAGG+GGG | + | chr2_1:13536234-13536253 | None:intergenic | 35.0% | |
| CACCATTAGAATATCCAAAG+GGG | + | chr2_1:13536235-13536254 | None:intergenic | 35.0% | |
| GAGGAAAATTACTCTCTTTC+AGG | - | chr2_1:13536361-13536380 | Msa0196360:intron | 35.0% | |
| GTTATACACAATCAGTACCT+TGG | + | chr2_1:13536674-13536693 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCCTAAATATACG+AGG | - | chr2_1:13536780-13536799 | Msa0196360:intron | 35.0% |
| ! | CTAGAATGTATTAGCCTATC+AGG | + | chr2_1:13537018-13537037 | None:intergenic | 35.0% |
| CTGATAGGCTAATACATTCT+AGG | - | chr2_1:13537016-13537035 | Msa0196360:intron | 35.0% | |
| ! | TTTAGTTTCCTCTCATCCTT+AGG | + | chr2_1:13537134-13537153 | None:intergenic | 35.0% |
| ACAGTAAAAGAGCTGAGTAA+AGG | - | chr2_1:13537364-13537383 | Msa0196360:intron | 35.0% | |
| AAGAGTTTGATAGATGGAGA+TGG | + | chr2_1:13537649-13537668 | None:intergenic | 35.0% | |
| AACAATGATGAGACAGTTCA+TGG | + | chr2_1:13537893-13537912 | None:intergenic | 35.0% | |
| !! | CTATGCTGACTTGTTCAAAA+AGG | - | chr2_1:13538272-13538291 | Msa0196360:intron | 35.0% |
| ! | AATGCTCCATGATTTGTAGT+AGG | - | chr2_1:13538353-13538372 | Msa0196360:intron | 35.0% |
| GATCAATTTATAGAGCTCAG+TGG | - | chr2_1:13538392-13538411 | Msa0196360:CDS | 35.0% | |
| !!! | TCAGTGGATTTTTTCATCCA+TGG | - | chr2_1:13538408-13538427 | Msa0196360:CDS | 35.0% |
| CTAAAACAGTAGCCTGAAAT+TGG | + | chr2_1:13538559-13538578 | None:intergenic | 35.0% | |
| GTACTAAATCCTTGCAAAGT+AGG | + | chr2_1:13538648-13538667 | None:intergenic | 35.0% | |
| ATCTCATCACACGTCTGAAT+CGG | - | chr2_1:13534524-13534543 | Msa0196360:three_prime_UTR | 40.0% | |
| GAGAGAAGGGAGAAAGAAAA+GGG | + | chr2_1:13534555-13534574 | None:intergenic | 40.0% | |
| AGAGAGAAGGGAGAAAGAAA+AGG | + | chr2_1:13534556-13534575 | None:intergenic | 40.0% | |
| !! | TGATGATGATGGAGAAGAGA+AGG | + | chr2_1:13534643-13534662 | None:intergenic | 40.0% |
| TCAAAAGCTGAAGAAGAGGA+TGG | + | chr2_1:13534693-13534712 | None:intergenic | 40.0% | |
| CACGTTGTGACATGATCATA+AGG | - | chr2_1:13535308-13535327 | Msa0196360:intron | 40.0% | |
| AATGTGCATAAGGTCCTGTT+TGG | + | chr2_1:13535498-13535517 | None:intergenic | 40.0% | |
| TATCTCACTCCGTGTATAAC+AGG | - | chr2_1:13535632-13535651 | Msa0196360:CDS | 40.0% | |
| ATCTCACTCCGTGTATAACA+GGG | - | chr2_1:13535633-13535652 | Msa0196360:CDS | 40.0% | |
| ! | CAGCTAGCAAATTTTCCCTT+TGG | + | chr2_1:13535778-13535797 | None:intergenic | 40.0% |
| ACCTGCATTGCATTCTTGAA+TGG | - | chr2_1:13535885-13535904 | Msa0196360:intron | 40.0% | |
| ACCATTCAAGAATGCAATGC+AGG | + | chr2_1:13535889-13535908 | None:intergenic | 40.0% | |
| ! | TAGTCATGGATTGTTGTGGT+TGG | - | chr2_1:13535932-13535951 | Msa0196360:intron | 40.0% |
| GAAAGCGATTGCCAACATAT+TGG | + | chr2_1:13536011-13536030 | None:intergenic | 40.0% | |
| ACACTTACAACTTCACCAGT+TGG | - | chr2_1:13536554-13536573 | Msa0196360:CDS | 40.0% | |
| GATACCGCCTCGTATATTTA+GGG | + | chr2_1:13536790-13536809 | None:intergenic | 40.0% | |
| TGATACCGCCTCGTATATTT+AGG | + | chr2_1:13536791-13536810 | None:intergenic | 40.0% | |
| GTGTTCTTCGTTCGTTAGTT+TGG | + | chr2_1:13536924-13536943 | None:intergenic | 40.0% | |
| ACGAACGAAGAACACATTCA+AGG | - | chr2_1:13536929-13536948 | Msa0196360:CDS | 40.0% | |
| AAGAACTCTGAACACAAACC+AGG | + | chr2_1:13537096-13537115 | None:intergenic | 40.0% | |
| !! | AATTTTCTGCTGCTTCAGCT+AGG | - | chr2_1:13537195-13537214 | Msa0196360:intron | 40.0% |
| ! | TGGCCTTAAAGAGAAGTTAC+TGG | - | chr2_1:13537330-13537349 | Msa0196360:intron | 40.0% |
| GAGCCAGTAACTTCTCTTTA+AGG | + | chr2_1:13537336-13537355 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTGAGGCAAGATCA+AGG | + | chr2_1:13537444-13537463 | None:intergenic | 40.0% |
| TGATCTTGCCTCAAAAAGGT+CGG | - | chr2_1:13537444-13537463 | Msa0196360:intron | 40.0% | |
| CTCTAATTCCTGTCCGTAAT+GGG | - | chr2_1:13537473-13537492 | Msa0196360:intron | 40.0% | |
| TCTAATTCCTGTCCGTAATG+GGG | - | chr2_1:13537474-13537493 | Msa0196360:intron | 40.0% | |
| TCTGTTGAAGAGAAAGACAC+TGG | - | chr2_1:13537523-13537542 | Msa0196360:intron | 40.0% | |
| CTGTTGAAGAGAAAGACACT+GGG | - | chr2_1:13537524-13537543 | Msa0196360:intron | 40.0% | |
| ACAGTGCTAGAAATGTGTGA+GGG | + | chr2_1:13537586-13537605 | None:intergenic | 40.0% | |
| AACAGTGCTAGAAATGTGTG+AGG | + | chr2_1:13537587-13537606 | None:intergenic | 40.0% | |
| GGAAATTCCTCCATATGTTC+AGG | - | chr2_1:13537618-13537637 | Msa0196360:intron | 40.0% | |
| !! | GATGGACTAACCTGAACATA+TGG | + | chr2_1:13537631-13537650 | None:intergenic | 40.0% |
| GTATCAAAGTATACCCTCCT+GGG | - | chr2_1:13537862-13537881 | Msa0196360:intron | 40.0% | |
| AATGATGAGACAGTTCATGG+AGG | + | chr2_1:13537890-13537909 | None:intergenic | 40.0% | |
| TGATTTGAATTCCTTCACGG+TGG | + | chr2_1:13537929-13537948 | None:intergenic | 40.0% | |
| !! | TGGAGCATTGATAACAATGC+AGG | + | chr2_1:13538342-13538361 | None:intergenic | 40.0% |
| GTAGAGAGGAACAATAACCA+TGG | + | chr2_1:13538428-13538447 | None:intergenic | 40.0% | |
| TCCTCTCTACATGTCAATAC+TGG | - | chr2_1:13538438-13538457 | Msa0196360:CDS | 40.0% | |
| !! | TCCAGTATTGACATGTAGAG+AGG | + | chr2_1:13538442-13538461 | None:intergenic | 40.0% |
| AAATCCTTGCAAAGTAGGTG+AGG | + | chr2_1:13538643-13538662 | None:intergenic | 40.0% | |
| TTAGGTGAGAACTGAGGAAG+TGG | + | chr2_1:13534596-13534615 | None:intergenic | 45.0% | |
| TTAGGGTTAGGTGAGAACTG+AGG | + | chr2_1:13534602-13534621 | None:intergenic | 45.0% | |
| TTCTCACCTAACCCTAACCA+TGG | - | chr2_1:13534605-13534624 | Msa0196360:three_prime_UTR | 45.0% | |
| AAGTAGCCATGGTTAGGGTT+AGG | + | chr2_1:13534614-13534633 | None:intergenic | 45.0% | |
| GGTGAAAGTAGCCATGGTTA+GGG | + | chr2_1:13534619-13534638 | None:intergenic | 45.0% | |
| AGGTGAAAGTAGCCATGGTT+AGG | + | chr2_1:13534620-13534639 | None:intergenic | 45.0% | |
| !! | TGATGATGGAGAAGAGAAGG+AGG | + | chr2_1:13534640-13534659 | None:intergenic | 45.0% |
| ! | GGAGTGGAAGATGATGATGA+TGG | + | chr2_1:13534654-13534673 | None:intergenic | 45.0% |
| ATAAGGAATCAGGGCCTGTT+TGG | - | chr2_1:13535220-13535239 | Msa0196360:intron | 45.0% | |
| CAGCTGCTTCAATGTGCATA+AGG | + | chr2_1:13535508-13535527 | None:intergenic | 45.0% | |
| CTTATGCACATTGAAGCAGC+TGG | - | chr2_1:13535506-13535525 | Msa0196360:intron | 45.0% | |
| GGGTAAATGTTTGGCATCAC+AGG | + | chr2_1:13535674-13535693 | None:intergenic | 45.0% | |
| ATCGTTGCGGGGTAAATGTT+TGG | + | chr2_1:13535683-13535702 | None:intergenic | 45.0% | |
| !! | GCAAAGAGTGCCCAATATGT+TGG | - | chr2_1:13535997-13536016 | Msa0196360:CDS | 45.0% |
| ! | TTTCTTTGAAAGACCCTGCC+TGG | - | chr2_1:13536027-13536046 | Msa0196360:CDS | 45.0% |
| GCCCCCTTTGGATATTCTAA+TGG | - | chr2_1:13536230-13536249 | Msa0196360:intron | 45.0% | |
| AAAACGAGCTCTACTTGCAG+CGG | + | chr2_1:13536441-13536460 | None:intergenic | 45.0% | |
| TGTTCAGAGACAGAGAAGAC+AGG | - | chr2_1:13536460-13536479 | Msa0196360:intron | 45.0% | |
| GTTCAGAGACAGAGAAGACA+GGG | - | chr2_1:13536461-13536480 | Msa0196360:intron | 45.0% | |
| GTTGATTGCATCCCAGATAC+AGG | + | chr2_1:13536536-13536555 | None:intergenic | 45.0% | |
| CTTACAACTTCACCAGTTGG+CGG | - | chr2_1:13536557-13536576 | Msa0196360:CDS | 45.0% | |
| !! | GTTGATGGTAGATCAGTGGT+CGG | + | chr2_1:13536590-13536609 | None:intergenic | 45.0% |
| CTAGTGTTTCTTGCAACCTC+AGG | + | chr2_1:13536626-13536645 | None:intergenic | 45.0% | |
| TGCAAGAAACACTAGTCCTG+AGG | - | chr2_1:13536631-13536650 | Msa0196360:CDS | 45.0% | |
| ATCAGTACCTTGGCCTGTAA+GGG | + | chr2_1:13536664-13536683 | None:intergenic | 45.0% | |
| AATCAGTACCTTGGCCTGTA+AGG | + | chr2_1:13536665-13536684 | None:intergenic | 45.0% | |
| TGGTCCCTAAATATACGAGG+CGG | - | chr2_1:13536783-13536802 | Msa0196360:intron | 45.0% | |
| TTACAGTCCATCACCACCTA+AGG | - | chr2_1:13537115-13537134 | Msa0196360:intron | 45.0% | |
| AGTTTCCTCTCATCCTTAGG+TGG | + | chr2_1:13537131-13537150 | None:intergenic | 45.0% | |
| AGATTTGAAGGACTCGGGAA+AGG | + | chr2_1:13537174-13537193 | None:intergenic | 45.0% | |
| GTTCAACGTGAGATGAATGC+TGG | - | chr2_1:13537388-13537407 | Msa0196360:intron | 45.0% | |
| GCCTTGATCTTGCCTCAAAA+AGG | - | chr2_1:13537440-13537459 | Msa0196360:intron | 45.0% | |
| GATCTTGCCTCAAAAAGGTC+GGG | - | chr2_1:13537445-13537464 | Msa0196360:intron | 45.0% | |
| CCATTACGGACAGGAATTAG+AGG | + | chr2_1:13537475-13537494 | None:intergenic | 45.0% | |
| CCTCTAATTCCTGTCCGTAA+TGG | - | chr2_1:13537472-13537491 | Msa0196360:intron | 45.0% | |
| CTAATTCCTGTCCGTAATGG+GGG | - | chr2_1:13537475-13537494 | Msa0196360:intron | 45.0% | |
| ! | GAACTTCAGGCTTTTCCGAA+GGG | - | chr2_1:13537497-13537516 | Msa0196360:intron | 45.0% |
| CTCTTCAACAGACTTCCCTT+CGG | + | chr2_1:13537515-13537534 | None:intergenic | 45.0% | |
| AGTGCTAGAAATGTGTGAGG+GGG | + | chr2_1:13537584-13537603 | None:intergenic | 45.0% | |
| CAGTGCTAGAAATGTGTGAG+GGG | + | chr2_1:13537585-13537604 | None:intergenic | 45.0% | |
| TAGCACTGTTGCTAGTCGAA+TGG | - | chr2_1:13537597-13537616 | Msa0196360:intron | 45.0% | |
| GGACTAACCTGAACATATGG+AGG | + | chr2_1:13537628-13537647 | None:intergenic | 45.0% | |
| GGTATCAAAGTATACCCTCC+TGG | - | chr2_1:13537861-13537880 | Msa0196360:intron | 45.0% | |
| ! | AAAGGTGCAAGAGACGACTT+TGG | - | chr2_1:13538290-13538309 | Msa0196360:intron | 45.0% |
| ! | TTGGTGACCAATGCACATGT+TGG | - | chr2_1:13538309-13538328 | Msa0196360:intron | 45.0% |
| ACGCATACCAACATGTGCAT+TGG | + | chr2_1:13538319-13538338 | None:intergenic | 45.0% | |
| TGAACCTCACCTACTTTGCA+AGG | - | chr2_1:13538636-13538655 | Msa0196360:five_prime_UTR | 45.0% | |
| !! | GAAAAATTATTAATTTATTT+AGG | - | chr2_1:13538533-13538552 | Msa0196360:exon | 5.0% |
| GAAGGAGGTGAAAGTAGCCA+TGG | + | chr2_1:13534625-13534644 | None:intergenic | 50.0% | |
| GAAGAGGATGGAGCTGAGAA+AGG | + | chr2_1:13534681-13534700 | None:intergenic | 50.0% | |
| CTCTACTTGCAGCGGCATAT+AGG | + | chr2_1:13536433-13536452 | None:intergenic | 50.0% | |
| AACTCTTCTGGGCCTGTATC+TGG | - | chr2_1:13536521-13536540 | Msa0196360:CDS | 50.0% | |
| ACTCTTCTGGGCCTGTATCT+GGG | - | chr2_1:13536522-13536541 | Msa0196360:CDS | 50.0% | |
| !! | GGCAGTTGATGGTAGATCAG+TGG | + | chr2_1:13536594-13536613 | None:intergenic | 50.0% |
| CTGTAAGGGACATCAACCTC+AGG | + | chr2_1:13536650-13536669 | None:intergenic | 50.0% | |
| !! | CTGAGGTTGATGTCCCTTAC+AGG | - | chr2_1:13536648-13536667 | Msa0196360:CDS | 50.0% |
| TTGATGTCCCTTACAGGCCA+AGG | - | chr2_1:13536654-13536673 | Msa0196360:CDS | 50.0% | |
| CTATAACGACTGCGCCTGAT+AGG | - | chr2_1:13537001-13537020 | Msa0196360:CDS | 50.0% | |
| CTCTCATCCTTAGGTGGTGA+TGG | + | chr2_1:13537125-13537144 | None:intergenic | 50.0% | |
| CATCACCACCTAAGGATGAG+AGG | - | chr2_1:13537123-13537142 | Msa0196360:CDS | 50.0% | |
| GAGATGAATGCTGGCATAGC+TGG | - | chr2_1:13537397-13537416 | Msa0196360:intron | 50.0% | |
| ! | AGGAGAACCCGACCTTTTTG+AGG | + | chr2_1:13537455-13537474 | None:intergenic | 50.0% |
| AGCCTGAAGTTCCCCCATTA+CGG | + | chr2_1:13537489-13537508 | None:intergenic | 50.0% | |
| ! | GGAACTTCAGGCTTTTCCGA+AGG | - | chr2_1:13537496-13537515 | Msa0196360:intron | 50.0% |
| TCACAGCATCATGTCCTCTC+TGG | + | chr2_1:13538234-13538253 | None:intergenic | 50.0% | |
| AGCTGAGAAAGGAGGAGGAG+TGG | + | chr2_1:13534670-13534689 | None:intergenic | 55.0% | |
| GATGGAGCTGAGAAAGGAGG+AGG | + | chr2_1:13534675-13534694 | None:intergenic | 55.0% | |
| GAGGATGGAGCTGAGAAAGG+AGG | + | chr2_1:13534678-13534697 | None:intergenic | 55.0% | |
| CCACAGCGTCAAGAAGCTCT+TGG | + | chr2_1:13536151-13536170 | None:intergenic | 55.0% | |
| CCAAGAGCTTCTTGACGCTG+TGG | - | chr2_1:13536148-13536167 | Msa0196360:intron | 55.0% | |
| AGAGCTTCTTGACGCTGTGG+AGG | - | chr2_1:13536151-13536170 | Msa0196360:intron | 55.0% | |
| ACTAATTCTCGGGCCCCCTT+TGG | - | chr2_1:13536218-13536237 | Msa0196360:intron | 55.0% | |
| CAGAGAAGACAGGGATCGTC+TGG | - | chr2_1:13536470-13536489 | Msa0196360:intron | 55.0% | |
| GAAGTTCCCCCATTACGGAC+AGG | + | chr2_1:13537484-13537503 | None:intergenic | 55.0% | |
| ! | GTCCGTAATGGGGGAACTTC+AGG | - | chr2_1:13537484-13537503 | Msa0196360:intron | 55.0% |
| GTTCATGGAGGATCCCAGGA+GGG | + | chr2_1:13537878-13537897 | None:intergenic | 55.0% | |
| AGTTCATGGAGGATCCCAGG+AGG | + | chr2_1:13537879-13537898 | None:intergenic | 55.0% | |
| GACAGTTCATGGAGGATCCC+AGG | + | chr2_1:13537882-13537901 | None:intergenic | 55.0% | |
| ! | AGACAGGGATCGTCTGGAGC+AGG | - | chr2_1:13536476-13536495 | Msa0196360:intron | 60.0% |
| !! | GGACGAGCGTTGGCAGTTGA+TGG | + | chr2_1:13536605-13536624 | None:intergenic | 60.0% |
| AACTGCCAACGCTCGTCCTG+AGG | - | chr2_1:13536607-13536626 | Msa0196360:CDS | 60.0% | |
| TGCAACCTCAGGACGAGCGT+TGG | + | chr2_1:13536615-13536634 | None:intergenic | 60.0% | |
| GCTGTCGAGTTCCACCGTGA+AGG | - | chr2_1:13537915-13537934 | Msa0196360:intron | 60.0% | |
| GTCGGTGAGCTACCGCCAAC+TGG | + | chr2_1:13536572-13536591 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13534464 | 13538706 | 13534464 | ID=Msa0196360;Name=Msa0196360 |
| chr2_1 | mRNA | 13534464 | 13538706 | 13534464 | ID=Msa0196360-mRNA-1;Parent=Msa0196360;Name=Msa0196360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=160|1|1|1|1|1|8|445|381 |
| chr2_1 | exon | 13534464 | 13534935 | 13534464 | ID=Msa0196360-mRNA-1:exon:5872;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13535531 | 13535870 | 13535531 | ID=Msa0196360-mRNA-1:exon:5871;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13535954 | 13536061 | 13535954 | ID=Msa0196360-mRNA-1:exon:5870;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13536495 | 13536787 | 13536495 | ID=Msa0196360-mRNA-1:exon:5869;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13536911 | 13537022 | 13536911 | ID=Msa0196360-mRNA-1:exon:5868;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13537122 | 13537184 | 13537122 | ID=Msa0196360-mRNA-1:exon:5867;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13537264 | 13537310 | 13537264 | ID=Msa0196360-mRNA-1:exon:5866;Parent=Msa0196360-mRNA-1 |
| chr2_1 | exon | 13538391 | 13538706 | 13538391 | ID=Msa0196360-mRNA-1:exon:5865;Parent=Msa0196360-mRNA-1 |
| chr2_1 | five_prime_UTR | 13538547 | 13538706 | 13538547 | ID=Msa0196360-mRNA-1:five_prime_utr;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13538391 | 13538546 | 13538391 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13537264 | 13537310 | 13537264 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13537122 | 13537184 | 13537122 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13536911 | 13537022 | 13536911 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13536495 | 13536787 | 13536495 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13535954 | 13536061 | 13535954 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13535531 | 13535870 | 13535531 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | CDS | 13534909 | 13534935 | 13534909 | ID=Msa0196360-mRNA-1:cds;Parent=Msa0196360-mRNA-1 |
| chr2_1 | three_prime_UTR | 13534464 | 13534908 | 13534464 | ID=Msa0196360-mRNA-1:three_prime_utr;Parent=Msa0196360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
