Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275680 | XP_013462769.1 | 95.822 | 383 | 6 | 2 | 1 | 375 | 1 | 381 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275680 | sp|Q4TU14|RHF1A_ARATH | 44.286 | 350 | 144 | 9 | 32 | 352 | 38 | 365 | 6.02e-74 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275680 | A0A072V4R5 | 95.822 | 383 | 6 | 2 | 1 | 375 | 1 | 381 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0275680 | 0.828299 | 9.709115e-55 | -8.615850e-47 |
| Msa0013050 | Msa0275680 | 0.840097 | 1.067576e-57 | -8.615850e-47 |
| Msa0030380 | Msa0275680 | -0.825951 | 3.542790e-54 | -8.615850e-47 |
| Msa0085360 | Msa0275680 | 0.824383 | 8.317483e-54 | -8.615850e-47 |
| Msa0162770 | Msa0275680 | 0.802051 | 6.738954e-49 | -8.615850e-47 |
| Msa0168640 | Msa0275680 | 0.850074 | 2.147538e-60 | -8.615850e-47 |
| Msa0173740 | Msa0275680 | -0.829520 | 4.917441e-55 | -8.615850e-47 |
| Msa0173820 | Msa0275680 | -0.832370 | 9.824526e-56 | -8.615850e-47 |
| Msa0177700 | Msa0275680 | 0.817157 | 3.814255e-52 | -8.615850e-47 |
| Msa0196360 | Msa0275680 | 0.833063 | 6.613725e-56 | -8.615850e-47 |
| Msa0200950 | Msa0275680 | 0.801659 | 8.110215e-49 | -8.615850e-47 |
| Msa0236270 | Msa0275680 | -0.806362 | 8.533855e-50 | -8.615850e-47 |
| Msa0238250 | Msa0275680 | 0.952316 | 3.151339e-110 | -8.615850e-47 |
| Msa0244270 | Msa0275680 | -0.804650 | 1.951037e-49 | -8.615850e-47 |
| Msa0275680 | Msa0315930 | 0.817609 | 3.017265e-52 | -8.615850e-47 |
| Msa0275680 | Msa0358170 | -0.817832 | 2.687325e-52 | -8.615850e-47 |
| Msa0275680 | Msa0378080 | -0.820505 | 6.621451e-53 | -8.615850e-47 |
| Msa0275680 | Msa0380040 | -0.807222 | 5.615290e-50 | -8.615850e-47 |
| Msa0275680 | Msa0387910 | -0.811215 | 7.826444e-51 | -8.615850e-47 |
| Msa0275680 | Msa0419640 | 0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0275680 | Msa0421780 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
| Msa0275680 | Msa0429290 | -0.820311 | 7.335741e-53 | -8.615850e-47 |
| Msa0275680 | Msa0465790 | -0.801964 | 7.023122e-49 | -8.615850e-47 |
| Msa0275680 | Msa0468160 | -0.810302 | 1.233293e-50 | -8.615850e-47 |
| Msa0275680 | Msa0469910 | 0.823947 | 1.052780e-53 | -8.615850e-47 |
| Msa0275680 | Msa0470180 | -0.804079 | 2.566044e-49 | -8.615850e-47 |
| Msa0275680 | Msa0473830 | 0.806991 | 6.286831e-50 | -8.615850e-47 |
| Msa0275680 | Msa0475580 | -0.812124 | 4.963578e-51 | -8.615850e-47 |
| Msa0275680 | Msa0493920 | -0.810784 | 9.703372e-51 | -8.615850e-47 |
| Msa0275680 | Msa0518040 | -0.824089 | 9.748630e-54 | -8.615850e-47 |
| Msa0275680 | Msa0518070 | 0.802450 | 5.577182e-49 | -8.615850e-47 |
| Msa0275680 | Msa0519220 | -0.819566 | 1.085646e-52 | -8.615850e-47 |
| Msa0275680 | Msa0553220 | 0.822991 | 1.761415e-53 | -8.615850e-47 |
| Msa0275680 | Msa0590680 | -0.828254 | 9.955093e-55 | -8.615850e-47 |
| Msa0275680 | Msa0618010 | -0.833910 | 4.064228e-56 | -8.615850e-47 |
| Msa0275680 | Msa0618200 | 0.803848 | 2.865324e-49 | -8.615850e-47 |
| Msa0275680 | Msa0621120 | -0.817704 | 2.872839e-52 | -8.615850e-47 |
| Msa0275680 | Msa0669850 | -0.801332 | 9.465068e-49 | -8.615850e-47 |
| Msa0275680 | Msa0688370 | -0.811627 | 6.369803e-51 | -8.615850e-47 |
| Msa0275680 | Msa0690250 | -0.810996 | 8.731995e-51 | -8.615850e-47 |
| Msa0275680 | Msa0712310 | -0.834572 | 2.774035e-56 | -8.615850e-47 |
| Msa0275680 | Msa0752620 | -0.821088 | 4.862395e-53 | -8.615850e-47 |
| Msa0275680 | Msa0784860 | -0.837137 | 6.207331e-57 | -8.615850e-47 |
| Msa0275680 | Msa0795030 | -0.820107 | 8.166550e-53 | -8.615850e-47 |
| Msa0275680 | Msa0813720 | -0.807037 | 6.145977e-50 | -8.615850e-47 |
| Msa0275680 | Msa0830990 | -0.836165 | 1.097996e-56 | -8.615850e-47 |
| Msa0275680 | Msa0852730 | -0.814857 | 1.244061e-51 | -8.615850e-47 |
| Msa0275680 | Msa0854120 | -0.801025 | 1.093605e-48 | -8.615850e-47 |
| Msa0275680 | Msa0870150 | -0.841892 | 3.607680e-58 | -8.615850e-47 |
| Msa0275680 | Msa0880220 | -0.813612 | 2.344041e-51 | -8.615850e-47 |
| Msa0275680 | Msa0900630 | -0.800041 | 1.735798e-48 | -8.615850e-47 |
| Msa0275680 | Msa0909000 | 0.819898 | 9.120636e-53 | -8.615850e-47 |
| Msa0275680 | Msa0926460 | -0.817036 | 4.061078e-52 | -8.615850e-47 |
| Msa0275680 | Msa0960150 | 0.803690 | 3.091176e-49 | -8.615850e-47 |
| Msa0275680 | Msa0965860 | -0.816210 | 6.219016e-52 | -8.615850e-47 |
| Msa0275680 | Msa1001580 | -0.823147 | 1.619705e-53 | -8.615850e-47 |
| Msa0275680 | Msa1028470 | 0.808745 | 2.662897e-50 | -8.615850e-47 |
| Msa0275680 | Msa1047400 | -0.817704 | 2.872454e-52 | -8.615850e-47 |
| Msa0275680 | Msa1067440 | 0.805934 | 1.050251e-49 | -8.615850e-47 |
| Msa0275680 | Msa1069660 | 0.818680 | 1.727672e-52 | -8.615850e-47 |
| Msa0275680 | Msa1084470 | -0.804317 | 2.289095e-49 | -8.615850e-47 |
| Msa0275680 | Msa1126120 | 0.864589 | 1.090320e-64 | -8.615850e-47 |
| Msa0275680 | Msa1136540 | -0.822870 | 1.879581e-53 | -8.615850e-47 |
| Msa0275680 | Msa1143930 | 0.837811 | 4.170226e-57 | -8.615850e-47 |
| Msa0275680 | Msa1171870 | -0.816313 | 5.897617e-52 | -8.615850e-47 |
| Msa0275680 | Msa1217430 | 0.835800 | 1.359213e-56 | -8.615850e-47 |
| Msa0275680 | Msa1260130 | -0.834106 | 3.631533e-56 | -8.615850e-47 |
| Msa0275680 | Msa1267260 | -0.803803 | 2.928135e-49 | -8.615850e-47 |
| Msa0275680 | Msa1270960 | 0.820750 | 5.814873e-53 | -8.615850e-47 |
| Msa0275680 | Msa1300050 | -0.811740 | 6.018264e-51 | -8.615850e-47 |
| Msa0275680 | Msa1302100 | -0.805473 | 1.312631e-49 | -8.615850e-47 |
| Msa0275680 | Msa1302190 | 0.853065 | 3.055684e-61 | -8.615850e-47 |
| Msa0275680 | Msa1306430 | -0.812378 | 4.370318e-51 | -8.615850e-47 |
| Msa0275680 | Msa1306580 | -0.832237 | 1.060338e-55 | -8.615850e-47 |
| Msa0275680 | Msa1308080 | 0.819682 | 1.021499e-52 | -8.615850e-47 |
| Msa0275680 | Msa1342640 | 0.801458 | 8.919614e-49 | -8.615850e-47 |
| Msa0275680 | Msa1347010 | -0.800238 | 1.583159e-48 | -8.615850e-47 |
| Msa0275680 | Msa1375340 | -0.816939 | 4.269374e-52 | -8.615850e-47 |
| Msa0275680 | Msa1382310 | -0.803994 | 2.671851e-49 | -8.615850e-47 |
| Msa0275680 | Msa1382410 | -0.807422 | 5.095442e-50 | -8.615850e-47 |
| Msa0275680 | Msa1387200 | -0.828774 | 7.457150e-55 | -8.615850e-47 |
| Msa0275680 | Msa1397950 | -0.812143 | 4.917935e-51 | -8.615850e-47 |
| Msa0275680 | Msa1403930 | 0.805527 | 1.278572e-49 | -8.615850e-47 |
| Msa0275680 | Msa1427830 | -0.826844 | 2.170821e-54 | -8.615850e-47 |
| Msa0275680 | Msa1453620 | -0.827049 | 1.938963e-54 | -8.615850e-47 |
| Msa0275680 | Msa1454110 | -0.844609 | 6.799961e-59 | -8.615850e-47 |
| Msa0275680 | Msa1460470 | -0.810764 | 9.798853e-51 | -8.615850e-47 |
| Msa0275680 | Msa1465960 | -0.825938 | 3.567299e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275680 | MtrunA17_Chr2g0287991 | 95.822 | 383 | 6 | 2 | 1 | 375 | 1 | 381 | 0.0 | 736 |
| Msa0275680 | MtrunA17_Chr2g0322261 | 39.542 | 349 | 175 | 10 | 34 | 346 | 31 | 379 | 2.78e-57 | 191 |
| Msa0275680 | MtrunA17_Chr7g0267851 | 35.621 | 306 | 150 | 11 | 4 | 280 | 10 | 297 | 6.67e-43 | 151 |
| Msa0275680 | MtrunA17_Chr8g0348651 | 54.167 | 48 | 22 | 0 | 37 | 84 | 137 | 184 | 1.47e-12 | 65.9 |
| Msa0275680 | MtrunA17_Chr8g0387191 | 52.174 | 46 | 22 | 0 | 37 | 82 | 153 | 198 | 6.56e-12 | 64.3 |
| Msa0275680 | MtrunA17_Chr7g0248061 | 52.083 | 48 | 23 | 0 | 37 | 84 | 137 | 184 | 2.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275680 | AT4G14220.1 | 44.286 | 350 | 144 | 9 | 32 | 352 | 38 | 365 | 6.12e-75 | 237 |
| Msa0275680 | AT5G22000.3 | 42.333 | 300 | 138 | 6 | 34 | 303 | 27 | 321 | 9.05e-60 | 197 |
| Msa0275680 | AT5G22000.1 | 42.333 | 300 | 138 | 6 | 34 | 303 | 27 | 321 | 9.05e-60 | 197 |
| Msa0275680 | AT5G22000.2 | 43.522 | 301 | 133 | 9 | 34 | 303 | 27 | 321 | 9.55e-60 | 197 |
| Msa0275680 | AT5G22000.4 | 38.672 | 256 | 120 | 9 | 79 | 303 | 1 | 250 | 1.18e-31 | 122 |
| Msa0275680 | AT4G00335.2 | 47.273 | 55 | 29 | 0 | 34 | 88 | 133 | 187 | 7.96e-12 | 64.3 |
| Msa0275680 | AT4G00335.1 | 47.273 | 55 | 29 | 0 | 34 | 88 | 133 | 187 | 7.96e-12 | 64.3 |
| Msa0275680 | AT4G00335.3 | 47.273 | 55 | 29 | 0 | 34 | 88 | 133 | 187 | 7.96e-12 | 64.3 |
| Msa0275680 | AT5G41350.1 | 45.833 | 48 | 26 | 0 | 37 | 84 | 158 | 205 | 7.22e-11 | 62.0 |
| Msa0275680 | AT5G41350.3 | 45.833 | 48 | 26 | 0 | 37 | 84 | 158 | 205 | 7.22e-11 | 62.0 |
| Msa0275680 | AT5G41350.2 | 45.833 | 48 | 26 | 0 | 37 | 84 | 183 | 230 | 8.04e-11 | 62.0 |
| Msa0275680 | AT4G23450.5 | 45.098 | 51 | 28 | 0 | 38 | 88 | 102 | 152 | 9.71e-11 | 60.1 |
| Msa0275680 | AT4G23450.1 | 45.098 | 51 | 28 | 0 | 38 | 88 | 102 | 152 | 9.71e-11 | 60.1 |
| Msa0275680 | AT4G23450.6 | 45.098 | 51 | 28 | 0 | 38 | 88 | 102 | 152 | 9.71e-11 | 60.1 |
| Msa0275680 | AT4G23450.4 | 45.098 | 51 | 28 | 0 | 38 | 88 | 102 | 152 | 9.71e-11 | 60.1 |
Find 117 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTCTGGGCCTGTATC+TGG | 0.093435 | 2_3:-7823838 | Msa0275680:CDS |
| TGAAATAATTTACTAGATTT+TGG | 0.099497 | 2_3:-7821904 | Msa0275680:three_prime_UTR |
| GAGCCAGTAACTTCTCTTTA+AGG | 0.167971 | 2_3:+7823050 | None:intergenic |
| CATATGCTTTATTTCTTTGT+AGG | 0.241246 | 2_3:-7825879 | Msa0275680:five_prime_UTR |
| CTCTAATTCCTGTCCGTAAT+GGG | 0.265206 | 2_3:-7822910 | Msa0275680:CDS |
| AATTTATTTAGGCCAATTTC+AGG | 0.278253 | 2_3:-7821831 | Msa0275680:three_prime_UTR |
| CTAAAACAGTAGCCTGAAAT+TGG | 0.301994 | 2_3:+7821819 | None:intergenic |
| GAAAGTGATTGCCAACATAT+TGG | 0.309790 | 2_3:+7824351 | None:intergenic |
| AGCAGAAAATTTAGATTTGA+AGG | 0.325081 | 2_3:+7823200 | None:intergenic |
| TAATTCTTGCAACAGATATA+AGG | 0.332956 | 2_3:-7823098 | Msa0275680:intron |
| TCCTCTCTACATGTCAATAC+TGG | 0.336210 | 2_3:-7821937 | Msa0275680:three_prime_UTR |
| CTATGCTGACTTGTTCAAAA+AGG | 0.355448 | 2_3:-7822103 | Msa0275680:three_prime_UTR |
| TTTAGTTTCCTCTCATCCTT+AGG | 0.365277 | 2_3:+7823252 | None:intergenic |
| CCTCTAATTCCTGTCCGTAA+TGG | 0.378043 | 2_3:-7822911 | Msa0275680:CDS |
| TGAACCTCACCTACTTTGTA+AGG | 0.389739 | 2_3:-7821739 | Msa0275680:three_prime_UTR |
| GCCTTGATCTTGCCTCAAAA+AGG | 0.392265 | 2_3:-7822943 | Msa0275680:CDS |
| TAAATTCCTACTACAAATCA+TGG | 0.392317 | 2_3:+7822016 | None:intergenic |
| AAAGTGATTGCCAACATATT+GGG | 0.393517 | 2_3:+7824352 | None:intergenic |
| AGAGAGAAGGGAGAAAGAAA+AGG | 0.399544 | 2_3:+7825801 | None:intergenic |
| CAGAGAAGACAGGGATCGTC+TGG | 0.403840 | 2_3:-7823889 | Msa0275680:CDS |
| CTCTCATCCTTAGGTGGTGA+TGG | 0.404554 | 2_3:+7823261 | None:intergenic |
| CATCTTCACTCACTAATTCT+CGG | 0.418524 | 2_3:-7824152 | Msa0275680:CDS |
| GAGAGAAGGGAGAAAGAAAA+GGG | 0.423480 | 2_3:+7825802 | None:intergenic |
| AGGTGAAAGTAGCCATGGTT+AGG | 0.423647 | 2_3:+7825737 | None:intergenic |
| ACTCTTCTGGGCCTGTATCT+GGG | 0.428779 | 2_3:-7823837 | Msa0275680:CDS |
| TGGCCTTAAAGAGAAGTTAC+TGG | 0.429545 | 2_3:-7823053 | Msa0275680:CDS |
| CCATTACGGACAGGAATTAG+AGG | 0.430973 | 2_3:+7822911 | None:intergenic |
| GGAAATTCCTCCATATGTTC+AGG | 0.432060 | 2_3:-7822765 | Msa0275680:intron |
| CTCTTCAACAGACTTCCCTT+CGG | 0.442480 | 2_3:+7822871 | None:intergenic |
| ACCTGCATTGCATTCTTGAA+TGG | 0.443529 | 2_3:-7824474 | Msa0275680:intron |
| AAGATGAAACATACAGTTGA+TGG | 0.451081 | 2_3:+7825577 | None:intergenic |
| CTACAAAGAAATAAAGCATA+TGG | 0.452255 | 2_3:+7825880 | None:intergenic |
| GAGATGAATGCTGGCATAGC+TGG | 0.452625 | 2_3:-7822986 | Msa0275680:CDS |
| GGACGAGCGTTGGCAGTTGA+TGG | 0.452688 | 2_3:+7823757 | None:intergenic |
| GTTGATTGCATCCCAGATAC+AGG | 0.453284 | 2_3:+7823826 | None:intergenic |
| ATCTTCACTCACTAATTCTC+GGG | 0.453331 | 2_3:-7824151 | Msa0275680:CDS |
| ATGCTGTGAAGACTTAGCTT+GGG | 0.454516 | 2_3:-7822139 | Msa0275680:exon |
| GAAGAGGATGGAGCTGAGAA+AGG | 0.454590 | 2_3:+7825670 | None:intergenic |
| GTCGGTGAGCTACCGCCAAC+TGG | 0.458070 | 2_3:+7823790 | None:intergenic |
| CTCTACTTGCAGCGGCATAT+AGG | 0.463448 | 2_3:+7823929 | None:intergenic |
| TGATGATGATGGAGAAGAGA+AGG | 0.464602 | 2_3:+7825714 | None:intergenic |
| TTTCTTTGAAAGACCCTGCC+TGG | 0.465367 | 2_3:-7824332 | Msa0275680:intron |
| AGCTGAGAAAGGAGGAGGAG+TGG | 0.468770 | 2_3:+7825681 | None:intergenic |
| GATGGACTAACCTGAACATA+TGG | 0.471478 | 2_3:+7822755 | None:intergenic |
| ATCTCATCACACGTCTGAAT+CGG | 0.477572 | 2_3:-7825830 | Msa0275680:five_prime_UTR |
| AAATTTAGATTTGAAGGACT+CGG | 0.485514 | 2_3:+7823206 | None:intergenic |
| GATGGAGCTGAGAAAGGAGG+AGG | 0.494226 | 2_3:+7825676 | None:intergenic |
| TTAGGTGAGAACTGAGGAAG+TGG | 0.495917 | 2_3:+7825761 | None:intergenic |
| TGTTCAGAGACAGAGAAGAC+AGG | 0.496007 | 2_3:-7823899 | Msa0275680:CDS |
| CAAATAAACATATACCAGGC+AGG | 0.496575 | 2_3:+7824318 | None:intergenic |
| TGAATAAGAAGAAAGAGAGA+AGG | 0.496936 | 2_3:+7825788 | None:intergenic |
| GAGGATGGAGCTGAGAAAGG+AGG | 0.499832 | 2_3:+7825673 | None:intergenic |
| GTACTAAATCCTTACAAAGT+AGG | 0.500324 | 2_3:+7821730 | None:intergenic |
| AAGTAGCCATGGTTAGGGTT+AGG | 0.500621 | 2_3:+7825743 | None:intergenic |
| AATGCTCCATGATTTGTAGT+AGG | 0.501923 | 2_3:-7822022 | Msa0275680:three_prime_UTR |
| TTACAGTCCATCACCACCTA+AGG | 0.512771 | 2_3:-7823268 | Msa0275680:CDS |
| CTAGTGTTTCTTGCAACCTC+AGG | 0.514134 | 2_3:+7823736 | None:intergenic |
| AATTTAGATTTGAAGGACTC+GGG | 0.514225 | 2_3:+7823207 | None:intergenic |
| AGACAGGGATCGTCTGGAGC+AGG | 0.517977 | 2_3:-7823883 | Msa0275680:CDS |
| GAATAAGAAGAAAGAGAGAA+GGG | 0.518676 | 2_3:+7825789 | None:intergenic |
| GAAGATGAAGATGATGATGA+TGG | 0.518836 | 2_3:+7825703 | None:intergenic |
| ACCATTCAAGAATGCAATGC+AGG | 0.523952 | 2_3:+7824473 | None:intergenic |
| ATCAAAATCAATTTCATCTG+AGG | 0.534385 | 2_3:+7823969 | None:intergenic |
| AGATTTGAAGGACTCGGGAA+AGG | 0.536774 | 2_3:+7823212 | None:intergenic |
| GCAAAGAGTGCCCAATATGT+TGG | 0.538649 | 2_3:-7824362 | Msa0275680:CDS |
| AGTTTCCTCTCATCCTTAGG+TGG | 0.539896 | 2_3:+7823255 | None:intergenic |
| ATCATCAAAAGCTGAAGAAG+AGG | 0.541296 | 2_3:+7825654 | None:intergenic |
| TCTGTTGAAGAGAAAGACAC+TGG | 0.543702 | 2_3:-7822860 | Msa0275680:CDS |
| GGTGAAAGTAGCCATGGTTA+GGG | 0.547953 | 2_3:+7825738 | None:intergenic |
| TTGAAAACAAGAATCTCTGA+TGG | 0.551136 | 2_3:+7823859 | None:intergenic |
| GTTCAGAGACAGAGAAGACA+GGG | 0.552538 | 2_3:-7823898 | Msa0275680:CDS |
| TAGCACTGTTGCTAGTCGAA+TGG | 0.553644 | 2_3:-7822786 | Msa0275680:CDS |
| CCACAGCGTCAAGAAGCTCT+TGG | 0.555254 | 2_3:+7824211 | None:intergenic |
| ACAGTAAAAGAGCTGAGTAA+AGG | 0.560131 | 2_3:-7823019 | Msa0275680:CDS |
| AAAGGTGCAAGAGACGACTT+TGG | 0.562692 | 2_3:-7822085 | Msa0275680:three_prime_UTR |
| TCACCATTAGAATATCCAAA+GGG | 0.563103 | 2_3:+7824126 | None:intergenic |
| TGGAGCATTGATAACAATGC+AGG | 0.563861 | 2_3:+7822036 | None:intergenic |
| AACTGCCAACGCTCGTCCTG+AGG | 0.563873 | 2_3:-7823752 | Msa0275680:CDS |
| GATGCTGTGAAGACTTAGCT+TGG | 0.567829 | 2_3:-7822140 | Msa0275680:exon |
| CTTACAACTTCACCAGTTGG+CGG | 0.573253 | 2_3:-7823802 | Msa0275680:CDS |
| TGATGATGGAGAAGAGAAGG+AGG | 0.574257 | 2_3:+7825717 | None:intergenic |
| GAAGGAGGTGAAAGTAGCCA+TGG | 0.575347 | 2_3:+7825732 | None:intergenic |
| AGAGCTTCTTGACGCTGTGG+AGG | 0.581549 | 2_3:-7824208 | Msa0275680:CDS |
| TCTAATTCCTGTCCGTAATG+GGG | 0.587637 | 2_3:-7822909 | Msa0275680:CDS |
| ACGCATACCAACATGTGCAT+TGG | 0.588346 | 2_3:+7822059 | None:intergenic |
| ACACTTACAACTTCACCAGT+TGG | 0.591557 | 2_3:-7823805 | Msa0275680:CDS |
| CTAATTCCTGTCCGTAATGG+GGG | 0.595714 | 2_3:-7822908 | Msa0275680:CDS |
| AGATGAAACATACAGTTGAT+GGG | 0.600146 | 2_3:+7825578 | None:intergenic |
| AATTCTAAAACTGAAGCAAG+TGG | 0.605650 | 2_3:-7822836 | Msa0275680:CDS |
| CCAAGAGCTTCTTGACGCTG+TGG | 0.605864 | 2_3:-7824211 | Msa0275680:CDS |
| GTTCAACGTGAGATGAATGC+TGG | 0.607319 | 2_3:-7822995 | Msa0275680:CDS |
| TGCAACCTCAGGACGAGCGT+TGG | 0.607887 | 2_3:+7823747 | None:intergenic |
| ATCACCATTAGAATATCCAA+AGG | 0.608593 | 2_3:+7824125 | None:intergenic |
| TCAAAAGCTGAAGAAGAGGA+TGG | 0.610945 | 2_3:+7825658 | None:intergenic |
| AAATAAACATATACCAGGCA+GGG | 0.612594 | 2_3:+7824319 | None:intergenic |
| TCAATTTCTAAAAGTACTCG+TGG | 0.615408 | 2_3:-7823073 | Msa0275680:CDS |
| GGCAGTTGATGGTAGATCAG+TGG | 0.627162 | 2_3:+7823768 | None:intergenic |
| TCCAGTATTGACATGTAGAG+AGG | 0.628190 | 2_3:+7821936 | None:intergenic |
| CATCACCACCTAAGGATGAG+AGG | 0.629698 | 2_3:-7823260 | Msa0275680:CDS |
| ACAGTGCTAGAAATGTGTGA+GGG | 0.630970 | 2_3:+7822800 | None:intergenic |
| CTGTTGAAGAGAAAGACACT+GGG | 0.636117 | 2_3:-7822859 | Msa0275680:CDS |
| AACAGTGCTAGAAATGTGTG+AGG | 0.645291 | 2_3:+7822799 | None:intergenic |
| GGACTAACCTGAACATATGG+AGG | 0.649006 | 2_3:+7822758 | None:intergenic |
| TTGCAAGAAACACTAGTCCA+AGG | 0.652898 | 2_3:-7823729 | Msa0275680:intron |
| AAAACGAGCTCTACTTGCAG+CGG | 0.654386 | 2_3:+7823921 | None:intergenic |
| TTGGTGACCAATGCACATGT+TGG | 0.660739 | 2_3:-7822066 | Msa0275680:three_prime_UTR |
| AAATCCTTACAAAGTAGGTG+AGG | 0.660803 | 2_3:+7821735 | None:intergenic |
| GATCAATTTATAGAGCTCAG+TGG | 0.663393 | 2_3:-7821983 | Msa0275680:three_prime_UTR |
| CAGTGCTAGAAATGTGTGAG+GGG | 0.664316 | 2_3:+7822801 | None:intergenic |
| ACCATTAGAATATCCAAAGG+GGG | 0.670624 | 2_3:+7824128 | None:intergenic |
| GTTGATGGTAGATCAGTGGT+CGG | 0.680474 | 2_3:+7823772 | None:intergenic |
| AGTGCTAGAAATGTGTGAGG+GGG | 0.683784 | 2_3:+7822802 | None:intergenic |
| TTAGGGTTAGGTGAGAACTG+AGG | 0.689355 | 2_3:+7825755 | None:intergenic |
| TGCTGTGAAGACTTAGCTTG+GGG | 0.693141 | 2_3:-7822138 | Msa0275680:exon |
| GTAGAGAGGAACAATAACCA+TGG | 0.693467 | 2_3:+7821950 | None:intergenic |
| TTCTCACCTAACCCTAACCA+TGG | 0.704621 | 2_3:-7825749 | Msa0275680:exon |
| CACCATTAGAATATCCAAAG+GGG | 0.704628 | 2_3:+7824127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTAGATTTTGCATT+TGG | - | chr2_3:7822039-7822058 | Msa0275680:three_prime_UTR | 15.0% |
| !!! | TTTTTTTAGATTTTGCATTT+GGG | - | chr2_3:7822040-7822059 | Msa0275680:three_prime_UTR | 15.0% |
| !! | TTATGATGATTAAATAAACA+TGG | + | chr2_3:7822425-7822444 | None:intergenic | 15.0% |
| !! | ATGTTTATTTAATCATCATA+AGG | - | chr2_3:7822424-7822443 | Msa0275680:intron | 15.0% |
| !!! | AAGTAATAAATTTTTATGTG+TGG | - | chr2_3:7822806-7822825 | Msa0275680:CDS | 15.0% |
| !!! | ACATAAATTGTTTTTTCTTT+AGG | - | chr2_3:7823185-7823204 | Msa0275680:intron | 15.0% |
| !! | TTGTAACTTATATATATTCA+GGG | + | chr2_3:7824025-7824044 | None:intergenic | 15.0% |
| !! | TTTGTAACTTATATATATTC+AGG | + | chr2_3:7824026-7824045 | None:intergenic | 15.0% |
| !!! | AAAACCCTATAATTTTAATA+TGG | - | chr2_3:7825036-7825055 | Msa0275680:intron | 15.0% |
| !! | GATACCATATTAAAATTATA+GGG | + | chr2_3:7825043-7825062 | None:intergenic | 15.0% |
| !! | TGATACCATATTAAAATTAT+AGG | + | chr2_3:7825044-7825063 | None:intergenic | 15.0% |
| !!! | TGAAATAATTTACTAGATTT+TGG | - | chr2_3:7825676-7825695 | Msa0275680:CDS | 15.0% |
| !!! | AATTTTTTGTTGAGAAATGA+GGG | - | chr2_3:7822195-7822214 | Msa0275680:intron | 20.0% |
| !!! | TGAATTTGCTTAAAATTTCA+AGG | - | chr2_3:7822291-7822310 | Msa0275680:intron | 20.0% |
| !!! | ATATGTTACGTTTTAATTTC+AGG | - | chr2_3:7823059-7823078 | Msa0275680:CDS | 20.0% |
| !! | TTTCTTGTGTTAAAATTTGT+TGG | - | chr2_3:7823511-7823530 | Msa0275680:intron | 20.0% |
| !!! | TTACGAGTAAAAAGTTATTT+TGG | - | chr2_3:7823960-7823979 | Msa0275680:CDS | 20.0% |
| !! | TTAACATATGAAACATTAGT+AGG | + | chr2_3:7824264-7824283 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAGTTTGATAGA+TGG | + | chr2_3:7824852-7824871 | None:intergenic | 20.0% |
| !!! | TATGTGATACTTTTATTTCT+AGG | - | chr2_3:7824904-7824923 | Msa0275680:intron | 20.0% |
| !! | ATATTGTCAACTAAAAAATC+TGG | - | chr2_3:7825144-7825163 | Msa0275680:intron | 20.0% |
| !!! | TAATAGAATAAGTTTGTTTG+CGG | - | chr2_3:7825175-7825194 | Msa0275680:intron | 20.0% |
| !!! | TGTTGTCAACTATTTTTTTT+GGG | + | chr2_3:7825310-7825329 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAACTATTTTTTT+TGG | + | chr2_3:7825311-7825330 | None:intergenic | 20.0% |
| !!! | AATAATTTACTAGATTTTGG+AGG | - | chr2_3:7825679-7825698 | Msa0275680:CDS | 20.0% |
| ! | CTACAAAGAAATAAAGCATA+TGG | + | chr2_3:7821703-7821722 | None:intergenic | 25.0% |
| !!! | CATATGCTTTATTTCTTTGT+AGG | - | chr2_3:7821701-7821720 | Msa0275680:three_prime_UTR | 25.0% |
| ! | CATCAAATTTCTATACAACA+AGG | + | chr2_3:7822155-7822174 | None:intergenic | 25.0% |
| ! | AATTTGATGTGTGTTTATGA+TGG | - | chr2_3:7822166-7822185 | Msa0275680:intron | 25.0% |
| !!! | CAATTTTTTGTTGAGAAATG+AGG | - | chr2_3:7822194-7822213 | Msa0275680:intron | 25.0% |
| !!! | TGTTTTTACCTTGATTTTTG+TGG | - | chr2_3:7822247-7822266 | Msa0275680:intron | 25.0% |
| ! | TTTAATCATCATAAGGAATC+AGG | - | chr2_3:7822431-7822450 | Msa0275680:intron | 25.0% |
| ! | TTAATCATCATAAGGAATCA+GGG | - | chr2_3:7822432-7822451 | Msa0275680:intron | 25.0% |
| !! | TAAACTTTTATGACACTGTT+TGG | - | chr2_3:7822492-7822511 | Msa0275680:intron | 25.0% |
| !! | AAACTTTTATGACACTGTTT+GGG | - | chr2_3:7822493-7822512 | Msa0275680:intron | 25.0% |
| ! | GTTATATAAGCACTTATGAA+TGG | + | chr2_3:7822658-7822677 | None:intergenic | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr2_3:7822702-7822721 | Msa0275680:intron | 25.0% |
| !! | TAAATTTTTATGTGTGGATG+AGG | - | chr2_3:7822812-7822831 | Msa0275680:CDS | 25.0% |
| ! | ATAGATAAATATATCGTTGC+GGG | + | chr2_3:7822916-7822935 | None:intergenic | 25.0% |
| ! | GATAGATAAATATATCGTTG+CGG | + | chr2_3:7822917-7822936 | None:intergenic | 25.0% |
| ! | AAACGTAACATATTAACACA+CGG | + | chr2_3:7823052-7823071 | None:intergenic | 25.0% |
| ! | CTAATTCATCAAGCTATATA+AGG | + | chr2_3:7823136-7823155 | None:intergenic | 25.0% |
| ! | TTTGCAAATAAACATATACC+AGG | + | chr2_3:7823269-7823288 | None:intergenic | 25.0% |
| !! | AAAAAGCTAGTATTGAGAAT+GGG | + | chr2_3:7823303-7823322 | None:intergenic | 25.0% |
| !! | TAAAAAGCTAGTATTGAGAA+TGG | + | chr2_3:7823304-7823323 | None:intergenic | 25.0% |
| !!! | TTCTCAATACTAGCTTTTTA+TGG | - | chr2_3:7823304-7823323 | Msa0275680:intron | 25.0% |
| ! | ATAGTATGATAAACGTATCA+AGG | + | chr2_3:7823549-7823568 | None:intergenic | 25.0% |
| ! | TACTATCATTCAATGATTAG+AGG | - | chr2_3:7823563-7823582 | Msa0275680:intron | 25.0% |
| ! | ATCAAAATCAATTTCATCTG+AGG | + | chr2_3:7823614-7823633 | None:intergenic | 25.0% |
| !!! | AGATGAAATTGATTTTGATG+AGG | - | chr2_3:7823615-7823634 | Msa0275680:intron | 25.0% |
| !!! | CTTTTAAGTATAATAAGCAG+TGG | - | chr2_3:7823890-7823909 | Msa0275680:CDS | 25.0% |
| ! | TGATGAATTAAACTGACTAA+TGG | - | chr2_3:7824079-7824098 | Msa0275680:intron | 25.0% |
| !! | TCAAGGATGTTTTGTAATTT+TGG | - | chr2_3:7824173-7824192 | Msa0275680:CDS | 25.0% |
| !! | CAAGGATGTTTTGTAATTTT+GGG | - | chr2_3:7824174-7824193 | Msa0275680:CDS | 25.0% |
| !!! | TTCATATGTTAACTTTTTCC+TGG | - | chr2_3:7824272-7824291 | Msa0275680:intron | 25.0% |
| ! | AAATTTAGATTTGAAGGACT+CGG | + | chr2_3:7824377-7824396 | None:intergenic | 25.0% |
| ! | AGCAGAAAATTTAGATTTGA+AGG | + | chr2_3:7824383-7824402 | None:intergenic | 25.0% |
| ! | TAATTCTTGCAACAGATATA+AGG | - | chr2_3:7824482-7824501 | Msa0275680:CDS | 25.0% |
| ! | ATATGATTTGAATTCCTTCA+CGG | + | chr2_3:7825128-7825147 | None:intergenic | 25.0% |
| ! | AAAGAAAAGAAAAAAACGCT+TGG | - | chr2_3:7825255-7825274 | Msa0275680:intron | 25.0% |
| ! | TAAATTCCTACTACAAATCA+TGG | + | chr2_3:7825567-7825586 | None:intergenic | 25.0% |
| ! | AATTTATTTAGGCCAATTTC+AGG | - | chr2_3:7825749-7825768 | Msa0275680:exon | 25.0% |
| GAATAAGAAGAAAGAGAGAA+GGG | + | chr2_3:7821794-7821813 | None:intergenic | 30.0% | |
| TGAATAAGAAGAAAGAGAGA+AGG | + | chr2_3:7821795-7821814 | None:intergenic | 30.0% | |
| AGATGAAACATACAGTTGAT+GGG | + | chr2_3:7822005-7822024 | None:intergenic | 30.0% | |
| AAGATGAAACATACAGTTGA+TGG | + | chr2_3:7822006-7822025 | None:intergenic | 30.0% | |
| AACTCAAACCACAAAAATCA+AGG | + | chr2_3:7822258-7822277 | None:intergenic | 30.0% | |
| ! | AAGCTATTCTAAAGAGCTTA+TGG | + | chr2_3:7822571-7822590 | None:intergenic | 30.0% |
| TAGATAAATATATCGTTGCG+GGG | + | chr2_3:7822915-7822934 | None:intergenic | 30.0% | |
| ! | GTTTAATTATGCCTTTTGTG+AGG | - | chr2_3:7822944-7822963 | Msa0275680:CDS | 30.0% |
| TTGTAACTAATCCTCACAAA+AGG | + | chr2_3:7822958-7822977 | None:intergenic | 30.0% | |
| ATAGCTTGATGAATTAGTCA+TGG | - | chr2_3:7823139-7823158 | Msa0275680:intron | 30.0% | |
| AAAGTGATTGCCAACATATT+GGG | + | chr2_3:7823231-7823250 | None:intergenic | 30.0% | |
| AAATAAACATATACCAGGCA+GGG | + | chr2_3:7823264-7823283 | None:intergenic | 30.0% | |
| !! | CTAGCTTTTTATGGTATGAT+TGG | - | chr2_3:7823313-7823332 | Msa0275680:intron | 30.0% |
| TCACCATTAGAATATCCAAA+GGG | + | chr2_3:7823457-7823476 | None:intergenic | 30.0% | |
| ATCACCATTAGAATATCCAA+AGG | + | chr2_3:7823458-7823477 | None:intergenic | 30.0% | |
| TTGAAAACAAGAATCTCTGA+TGG | + | chr2_3:7823724-7823743 | None:intergenic | 30.0% | |
| !!! | ATTCTTGTTTTCAACTCTTC+TGG | - | chr2_3:7823730-7823749 | Msa0275680:CDS | 30.0% |
| !!! | TTCTTGTTTTCAACTCTTCT+GGG | - | chr2_3:7823731-7823750 | Msa0275680:CDS | 30.0% |
| TACTCGTAAGTAAACAATCA+GGG | + | chr2_3:7823949-7823968 | None:intergenic | 30.0% | |
| TTACTCGTAAGTAAACAATC+AGG | + | chr2_3:7823950-7823969 | None:intergenic | 30.0% | |
| TGAATAACAAGAGACATTCA+AGG | - | chr2_3:7824156-7824175 | Msa0275680:CDS | 30.0% | |
| ! | AAATGAGTGAACAGTCATTT+TGG | + | chr2_3:7824240-7824259 | None:intergenic | 30.0% |
| AATTTAGATTTGAAGGACTC+GGG | + | chr2_3:7824376-7824395 | None:intergenic | 30.0% | |
| TAAGATAAGTTAGCAGTGAA+GGG | + | chr2_3:7824458-7824477 | None:intergenic | 30.0% | |
| TTAAGATAAGTTAGCAGTGA+AGG | + | chr2_3:7824459-7824478 | None:intergenic | 30.0% | |
| !! | TCAATTTCTAAAAGTACTCG+TGG | - | chr2_3:7824507-7824526 | Msa0275680:intron | 30.0% |
| !! | AATTCTAAAACTGAAGCAAG+TGG | - | chr2_3:7824744-7824763 | Msa0275680:intron | 30.0% |
| !! | GTTTTAGATAAAGAGAGGAA+AGG | + | chr2_3:7825021-7825040 | None:intergenic | 30.0% |
| !!! | ATAGGGTTTTAGATAAAGAG+AGG | + | chr2_3:7825026-7825045 | None:intergenic | 30.0% |
| ! | ATAAGTTTGTTTGCGGAATT+TGG | - | chr2_3:7825182-7825201 | Msa0275680:intron | 30.0% |
| ! | TAAGTTTGTTTGCGGAATTT+GGG | - | chr2_3:7825183-7825202 | Msa0275680:intron | 30.0% |
| AAAGAAAAAAACGCTTGGAT+TGG | - | chr2_3:7825260-7825279 | Msa0275680:intron | 30.0% | |
| AATACATTCATCACTTCGAA+AGG | + | chr2_3:7825340-7825359 | None:intergenic | 30.0% | |
| !!! | TTACTATTTTGATTCCAGAG+AGG | - | chr2_3:7825413-7825432 | Msa0275680:intron | 30.0% |
| GTACTAAATCCTTACAAAGT+AGG | + | chr2_3:7825853-7825872 | None:intergenic | 30.0% | |
| ! | GAAGATGAAGATGATGATGA+TGG | + | chr2_3:7821880-7821899 | None:intergenic | 35.0% |
| ATCATCAAAAGCTGAAGAAG+AGG | + | chr2_3:7821929-7821948 | None:intergenic | 35.0% | |
| TTTGTTGAGAAATGAGGGTT+TGG | - | chr2_3:7822200-7822219 | Msa0275680:intron | 35.0% | |
| ! | GCTTATTTGAGTTTATCTGC+TGG | - | chr2_3:7822467-7822486 | Msa0275680:intron | 35.0% |
| CACCTTATGACATGATCATA+AGG | - | chr2_3:7822529-7822548 | Msa0275680:intron | 35.0% | |
| CACCTTATGATCATGTCATA+AGG | + | chr2_3:7822534-7822553 | None:intergenic | 35.0% | |
| TATCTCACTCAGTGTATAAC+AGG | - | chr2_3:7822853-7822872 | Msa0275680:CDS | 35.0% | |
| ATCTCACTCAGTGTATAACA+GGG | - | chr2_3:7822854-7822873 | Msa0275680:CDS | 35.0% | |
| TACAACCTGTAGATTACCAA+AGG | - | chr2_3:7822980-7822999 | Msa0275680:CDS | 35.0% | |
| ACAACCTGTAGATTACCAAA+GGG | - | chr2_3:7822981-7823000 | Msa0275680:CDS | 35.0% | |
| !! | TTTTCCCTTTGGTAATCTAC+AGG | + | chr2_3:7822988-7823007 | None:intergenic | 35.0% |
| TAACACACGGTTCAACATTT+AGG | + | chr2_3:7823039-7823058 | None:intergenic | 35.0% | |
| ! | GAATTAGTCATGGATTGTTG+TGG | - | chr2_3:7823149-7823168 | Msa0275680:intron | 35.0% |
| GAAAGTGATTGCCAACATAT+TGG | + | chr2_3:7823232-7823251 | None:intergenic | 35.0% | |
| CAAATAAACATATACCAGGC+AGG | + | chr2_3:7823265-7823284 | None:intergenic | 35.0% | |
| CATCTTCACTCACTAATTCT+CGG | - | chr2_3:7823428-7823447 | Msa0275680:intron | 35.0% | |
| ATCTTCACTCACTAATTCTC+GGG | - | chr2_3:7823429-7823448 | Msa0275680:intron | 35.0% | |
| ACCATTAGAATATCCAAAGG+GGG | + | chr2_3:7823455-7823474 | None:intergenic | 35.0% | |
| CACCATTAGAATATCCAAAG+GGG | + | chr2_3:7823456-7823475 | None:intergenic | 35.0% | |
| GAGGAAAATTACTCTCTTTC+AGG | - | chr2_3:7823582-7823601 | Msa0275680:intron | 35.0% | |
| GTTATACACAATCAGTACCT+TGG | + | chr2_3:7823871-7823890 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCCTAAATATACG+AGG | - | chr2_3:7823977-7823996 | Msa0275680:CDS | 35.0% |
| ! | CTAGAATGTATTAGCCTATC+AGG | + | chr2_3:7824215-7824234 | None:intergenic | 35.0% |
| CTGATAGGCTAATACATTCT+AGG | - | chr2_3:7824213-7824232 | Msa0275680:CDS | 35.0% | |
| ! | TTTAGTTTCCTCTCATCCTT+AGG | + | chr2_3:7824331-7824350 | None:intergenic | 35.0% |
| ACAGTAAAAGAGCTGAGTAA+AGG | - | chr2_3:7824561-7824580 | Msa0275680:intron | 35.0% | |
| AAGAGTTTGATAGATGGAGA+TGG | + | chr2_3:7824846-7824865 | None:intergenic | 35.0% | |
| AACAATGATGAGACAGTTCA+TGG | + | chr2_3:7825089-7825108 | None:intergenic | 35.0% | |
| !! | CTATGCTGACTTGTTCAAAA+AGG | - | chr2_3:7825477-7825496 | Msa0275680:intron | 35.0% |
| ! | AATGCTCCATGATTTGTAGT+AGG | - | chr2_3:7825558-7825577 | Msa0275680:intron | 35.0% |
| GATCAATTTATAGAGCTCAG+TGG | - | chr2_3:7825597-7825616 | Msa0275680:CDS | 35.0% | |
| !!! | TCAGTGGATTTTTTCATCCA+TGG | - | chr2_3:7825613-7825632 | Msa0275680:CDS | 35.0% |
| CTAAAACAGTAGCCTGAAAT+TGG | + | chr2_3:7825764-7825783 | None:intergenic | 35.0% | |
| AAATCCTTACAAAGTAGGTG+AGG | + | chr2_3:7825848-7825867 | None:intergenic | 35.0% | |
| ATCTCATCACACGTCTGAAT+CGG | - | chr2_3:7821750-7821769 | Msa0275680:three_prime_UTR | 40.0% | |
| GAGAGAAGGGAGAAAGAAAA+GGG | + | chr2_3:7821781-7821800 | None:intergenic | 40.0% | |
| AGAGAGAAGGGAGAAAGAAA+AGG | + | chr2_3:7821782-7821801 | None:intergenic | 40.0% | |
| !! | TGATGATGATGGAGAAGAGA+AGG | + | chr2_3:7821869-7821888 | None:intergenic | 40.0% |
| TCAAAAGCTGAAGAAGAGGA+TGG | + | chr2_3:7821925-7821944 | None:intergenic | 40.0% | |
| !!! | ATGAGGGTTTGGTGTGATTT+TGG | - | chr2_3:7822211-7822230 | Msa0275680:intron | 40.0% |
| !!! | TGAGGGTTTGGTGTGATTTT+GGG | - | chr2_3:7822212-7822231 | Msa0275680:intron | 40.0% |
| GATGTGTATAAGGTCCTGTT+TGG | + | chr2_3:7822719-7822738 | None:intergenic | 40.0% | |
| ! | CAGCTAGCAAATTTTCCCTT+TGG | + | chr2_3:7822999-7823018 | None:intergenic | 40.0% |
| ACCTGCATTGCATTCTTGAA+TGG | - | chr2_3:7823106-7823125 | Msa0275680:intron | 40.0% | |
| ACCATTCAAGAATGCAATGC+AGG | + | chr2_3:7823110-7823129 | None:intergenic | 40.0% | |
| ! | TAGTCATGGATTGTTGTGGT+TGG | - | chr2_3:7823153-7823172 | Msa0275680:intron | 40.0% |
| ACACTTACAACTTCACCAGT+TGG | - | chr2_3:7823775-7823794 | Msa0275680:CDS | 40.0% | |
| TTGCAAGAAACACTAGTCCA+AGG | - | chr2_3:7823851-7823870 | Msa0275680:CDS | 40.0% | |
| GATACCGCCTCGTATATTTA+GGG | + | chr2_3:7823987-7824006 | None:intergenic | 40.0% | |
| TGATACCGCCTCGTATATTT+AGG | + | chr2_3:7823988-7824007 | None:intergenic | 40.0% | |
| GTGTTCTTCGTTCGTTAGTT+TGG | + | chr2_3:7824121-7824140 | None:intergenic | 40.0% | |
| ACGAACGAAGAACACATTCA+AGG | - | chr2_3:7824126-7824145 | Msa0275680:CDS | 40.0% | |
| AAGAACTCTGAACACAAACC+AGG | + | chr2_3:7824293-7824312 | None:intergenic | 40.0% | |
| !! | AATTTTCTGCTGCTTCAGCT+AGG | - | chr2_3:7824392-7824411 | Msa0275680:intron | 40.0% |
| ! | TGGCCTTAAAGAGAAGTTAC+TGG | - | chr2_3:7824527-7824546 | Msa0275680:intron | 40.0% |
| GAGCCAGTAACTTCTCTTTA+AGG | + | chr2_3:7824533-7824552 | None:intergenic | 40.0% | |
| !!! | ACCTTTTTGAGGCAAGATCA+AGG | + | chr2_3:7824641-7824660 | None:intergenic | 40.0% |
| TGATCTTGCCTCAAAAAGGT+CGG | - | chr2_3:7824641-7824660 | Msa0275680:intron | 40.0% | |
| CTCTAATTCCTGTCCGTAAT+GGG | - | chr2_3:7824670-7824689 | Msa0275680:intron | 40.0% | |
| TCTAATTCCTGTCCGTAATG+GGG | - | chr2_3:7824671-7824690 | Msa0275680:intron | 40.0% | |
| TCTGTTGAAGAGAAAGACAC+TGG | - | chr2_3:7824720-7824739 | Msa0275680:intron | 40.0% | |
| CTGTTGAAGAGAAAGACACT+GGG | - | chr2_3:7824721-7824740 | Msa0275680:intron | 40.0% | |
| ACAGTGCTAGAAATGTGTGA+GGG | + | chr2_3:7824783-7824802 | None:intergenic | 40.0% | |
| AACAGTGCTAGAAATGTGTG+AGG | + | chr2_3:7824784-7824803 | None:intergenic | 40.0% | |
| GGAAATTCCTCCATATGTTC+AGG | - | chr2_3:7824815-7824834 | Msa0275680:intron | 40.0% | |
| !! | GATGGACTAACCTGAACATA+TGG | + | chr2_3:7824828-7824847 | None:intergenic | 40.0% |
| GTATCAAAGTATACCCTCCT+GGG | - | chr2_3:7825058-7825077 | Msa0275680:intron | 40.0% | |
| AATGATGAGACAGTTCATGG+AGG | + | chr2_3:7825086-7825105 | None:intergenic | 40.0% | |
| TGATTTGAATTCCTTCACGG+TGG | + | chr2_3:7825125-7825144 | None:intergenic | 40.0% | |
| ATGCTGTGAAGACTTAGCTT+GGG | - | chr2_3:7825441-7825460 | Msa0275680:intron | 40.0% | |
| !! | TGGAGCATTGATAACAATGC+AGG | + | chr2_3:7825547-7825566 | None:intergenic | 40.0% |
| GTAGAGAGGAACAATAACCA+TGG | + | chr2_3:7825633-7825652 | None:intergenic | 40.0% | |
| TCCTCTCTACATGTCAATAC+TGG | - | chr2_3:7825643-7825662 | Msa0275680:CDS | 40.0% | |
| !! | TCCAGTATTGACATGTAGAG+AGG | + | chr2_3:7825647-7825666 | None:intergenic | 40.0% |
| TGAACCTCACCTACTTTGTA+AGG | - | chr2_3:7825841-7825860 | Msa0275680:five_prime_UTR | 40.0% | |
| TTAGGTGAGAACTGAGGAAG+TGG | + | chr2_3:7821822-7821841 | None:intergenic | 45.0% | |
| TTAGGGTTAGGTGAGAACTG+AGG | + | chr2_3:7821828-7821847 | None:intergenic | 45.0% | |
| TTCTCACCTAACCCTAACCA+TGG | - | chr2_3:7821831-7821850 | Msa0275680:three_prime_UTR | 45.0% | |
| AAGTAGCCATGGTTAGGGTT+AGG | + | chr2_3:7821840-7821859 | None:intergenic | 45.0% | |
| GGTGAAAGTAGCCATGGTTA+GGG | + | chr2_3:7821845-7821864 | None:intergenic | 45.0% | |
| AGGTGAAAGTAGCCATGGTT+AGG | + | chr2_3:7821846-7821865 | None:intergenic | 45.0% | |
| !! | TGATGATGGAGAAGAGAAGG+AGG | + | chr2_3:7821866-7821885 | None:intergenic | 45.0% |
| CTCAAATAAGCCATCCAAGC+AGG | + | chr2_3:7822458-7822477 | None:intergenic | 45.0% | |
| CAGCTGCTTCGATGTGTATA+AGG | + | chr2_3:7822729-7822748 | None:intergenic | 45.0% | |
| CTTATACACATCGAAGCAGC+TGG | - | chr2_3:7822727-7822746 | Msa0275680:intron | 45.0% | |
| GGGTAAATGTTTGGCATCAC+AGG | + | chr2_3:7822895-7822914 | None:intergenic | 45.0% | |
| ATCGTTGCGGGGTAAATGTT+TGG | + | chr2_3:7822904-7822923 | None:intergenic | 45.0% | |
| !! | GCAAAGAGTGCCCAATATGT+TGG | - | chr2_3:7823218-7823237 | Msa0275680:CDS | 45.0% |
| ! | TTTCTTTGAAAGACCCTGCC+TGG | - | chr2_3:7823248-7823267 | Msa0275680:CDS | 45.0% |
| GCCCCCTTTGGATATTCTAA+TGG | - | chr2_3:7823451-7823470 | Msa0275680:intron | 45.0% | |
| AAAACGAGCTCTACTTGCAG+CGG | + | chr2_3:7823662-7823681 | None:intergenic | 45.0% | |
| TGTTCAGAGACAGAGAAGAC+AGG | - | chr2_3:7823681-7823700 | Msa0275680:intron | 45.0% | |
| GTTCAGAGACAGAGAAGACA+GGG | - | chr2_3:7823682-7823701 | Msa0275680:intron | 45.0% | |
| GTTGATTGCATCCCAGATAC+AGG | + | chr2_3:7823757-7823776 | None:intergenic | 45.0% | |
| CTTACAACTTCACCAGTTGG+CGG | - | chr2_3:7823778-7823797 | Msa0275680:CDS | 45.0% | |
| !! | GTTGATGGTAGATCAGTGGT+CGG | + | chr2_3:7823811-7823830 | None:intergenic | 45.0% |
| CTAGTGTTTCTTGCAACCTC+AGG | + | chr2_3:7823847-7823866 | None:intergenic | 45.0% | |
| TGGTCCCTAAATATACGAGG+CGG | - | chr2_3:7823980-7823999 | Msa0275680:intron | 45.0% | |
| TTACAGTCCATCACCACCTA+AGG | - | chr2_3:7824312-7824331 | Msa0275680:intron | 45.0% | |
| AGTTTCCTCTCATCCTTAGG+TGG | + | chr2_3:7824328-7824347 | None:intergenic | 45.0% | |
| AGATTTGAAGGACTCGGGAA+AGG | + | chr2_3:7824371-7824390 | None:intergenic | 45.0% | |
| GTTCAACGTGAGATGAATGC+TGG | - | chr2_3:7824585-7824604 | Msa0275680:intron | 45.0% | |
| GCCTTGATCTTGCCTCAAAA+AGG | - | chr2_3:7824637-7824656 | Msa0275680:intron | 45.0% | |
| GATCTTGCCTCAAAAAGGTC+GGG | - | chr2_3:7824642-7824661 | Msa0275680:intron | 45.0% | |
| CCATTACGGACAGGAATTAG+AGG | + | chr2_3:7824672-7824691 | None:intergenic | 45.0% | |
| CCTCTAATTCCTGTCCGTAA+TGG | - | chr2_3:7824669-7824688 | Msa0275680:intron | 45.0% | |
| CTAATTCCTGTCCGTAATGG+GGG | - | chr2_3:7824672-7824691 | Msa0275680:intron | 45.0% | |
| ! | GAACTTCAGGCTTTTCCGAA+GGG | - | chr2_3:7824694-7824713 | Msa0275680:intron | 45.0% |
| CTCTTCAACAGACTTCCCTT+CGG | + | chr2_3:7824712-7824731 | None:intergenic | 45.0% | |
| AGTGCTAGAAATGTGTGAGG+GGG | + | chr2_3:7824781-7824800 | None:intergenic | 45.0% | |
| CAGTGCTAGAAATGTGTGAG+GGG | + | chr2_3:7824782-7824801 | None:intergenic | 45.0% | |
| TAGCACTGTTGCTAGTCGAA+TGG | - | chr2_3:7824794-7824813 | Msa0275680:intron | 45.0% | |
| GGACTAACCTGAACATATGG+AGG | + | chr2_3:7824825-7824844 | None:intergenic | 45.0% | |
| GGTATCAAAGTATACCCTCC+TGG | - | chr2_3:7825057-7825076 | Msa0275680:intron | 45.0% | |
| GATGCTGTGAAGACTTAGCT+TGG | - | chr2_3:7825440-7825459 | Msa0275680:intron | 45.0% | |
| ! | TGCTGTGAAGACTTAGCTTG+GGG | - | chr2_3:7825442-7825461 | Msa0275680:intron | 45.0% |
| ! | AAAGGTGCAAGAGACGACTT+TGG | - | chr2_3:7825495-7825514 | Msa0275680:intron | 45.0% |
| ! | TTGGTGACCAATGCACATGT+TGG | - | chr2_3:7825514-7825533 | Msa0275680:intron | 45.0% |
| ACGCATACCAACATGTGCAT+TGG | + | chr2_3:7825524-7825543 | None:intergenic | 45.0% | |
| !! | GAAAAATTATTAATTTATTT+AGG | - | chr2_3:7825738-7825757 | Msa0275680:exon | 5.0% |
| GAAGGAGGTGAAAGTAGCCA+TGG | + | chr2_3:7821851-7821870 | None:intergenic | 50.0% | |
| GAAGAGGATGGAGCTGAGAA+AGG | + | chr2_3:7821913-7821932 | None:intergenic | 50.0% | |
| ATAAGGAATCAGGGCCTGCT+TGG | - | chr2_3:7822441-7822460 | Msa0275680:intron | 50.0% | |
| CTCTACTTGCAGCGGCATAT+AGG | + | chr2_3:7823654-7823673 | None:intergenic | 50.0% | |
| AACTCTTCTGGGCCTGTATC+TGG | - | chr2_3:7823742-7823761 | Msa0275680:CDS | 50.0% | |
| ACTCTTCTGGGCCTGTATCT+GGG | - | chr2_3:7823743-7823762 | Msa0275680:CDS | 50.0% | |
| !! | GGCAGTTGATGGTAGATCAG+TGG | + | chr2_3:7823815-7823834 | None:intergenic | 50.0% |
| CTATAACGACTGCGCCTGAT+AGG | - | chr2_3:7824198-7824217 | Msa0275680:CDS | 50.0% | |
| CTCTCATCCTTAGGTGGTGA+TGG | + | chr2_3:7824322-7824341 | None:intergenic | 50.0% | |
| CATCACCACCTAAGGATGAG+AGG | - | chr2_3:7824320-7824339 | Msa0275680:intron | 50.0% | |
| GAGATGAATGCTGGCATAGC+TGG | - | chr2_3:7824594-7824613 | Msa0275680:intron | 50.0% | |
| ! | AGGAGAACCCGACCTTTTTG+AGG | + | chr2_3:7824652-7824671 | None:intergenic | 50.0% |
| AGCCTGAAGTTCCCCCATTA+CGG | + | chr2_3:7824686-7824705 | None:intergenic | 50.0% | |
| ! | GGAACTTCAGGCTTTTCCGA+AGG | - | chr2_3:7824693-7824712 | Msa0275680:intron | 50.0% |
| TCACAGCATCATGTCCTCTC+TGG | + | chr2_3:7825430-7825449 | None:intergenic | 50.0% | |
| AGCTGAGAAAGGAGGAGGAG+TGG | + | chr2_3:7821902-7821921 | None:intergenic | 55.0% | |
| GATGGAGCTGAGAAAGGAGG+AGG | + | chr2_3:7821907-7821926 | None:intergenic | 55.0% | |
| GAGGATGGAGCTGAGAAAGG+AGG | + | chr2_3:7821910-7821929 | None:intergenic | 55.0% | |
| CCACAGCGTCAAGAAGCTCT+TGG | + | chr2_3:7823372-7823391 | None:intergenic | 55.0% | |
| CCAAGAGCTTCTTGACGCTG+TGG | - | chr2_3:7823369-7823388 | Msa0275680:intron | 55.0% | |
| AGAGCTTCTTGACGCTGTGG+AGG | - | chr2_3:7823372-7823391 | Msa0275680:intron | 55.0% | |
| ACTAATTCTCGGGCCCCCTT+TGG | - | chr2_3:7823439-7823458 | Msa0275680:intron | 55.0% | |
| CAGAGAAGACAGGGATCGTC+TGG | - | chr2_3:7823691-7823710 | Msa0275680:intron | 55.0% | |
| GAAGTTCCCCCATTACGGAC+AGG | + | chr2_3:7824681-7824700 | None:intergenic | 55.0% | |
| ! | GTCCGTAATGGGGGAACTTC+AGG | - | chr2_3:7824681-7824700 | Msa0275680:intron | 55.0% |
| GTTCATGGAGGATCCCAGGA+GGG | + | chr2_3:7825074-7825093 | None:intergenic | 55.0% | |
| AGTTCATGGAGGATCCCAGG+AGG | + | chr2_3:7825075-7825094 | None:intergenic | 55.0% | |
| GACAGTTCATGGAGGATCCC+AGG | + | chr2_3:7825078-7825097 | None:intergenic | 55.0% | |
| GGAATCAGGGCCTGCTTGGA+TGG | - | chr2_3:7822445-7822464 | Msa0275680:intron | 60.0% | |
| ! | AGACAGGGATCGTCTGGAGC+AGG | - | chr2_3:7823697-7823716 | Msa0275680:intron | 60.0% |
| !! | GGACGAGCGTTGGCAGTTGA+TGG | + | chr2_3:7823826-7823845 | None:intergenic | 60.0% |
| AACTGCCAACGCTCGTCCTG+AGG | - | chr2_3:7823828-7823847 | Msa0275680:CDS | 60.0% | |
| TGCAACCTCAGGACGAGCGT+TGG | + | chr2_3:7823836-7823855 | None:intergenic | 60.0% | |
| GCTGTCGAGTTCCACCGTGA+AGG | - | chr2_3:7825111-7825130 | Msa0275680:intron | 60.0% | |
| GTCGGTGAGCTACCGCCAAC+TGG | + | chr2_3:7823793-7823812 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7821691 | 7825911 | 7821691 | ID=Msa0275680;Name=Msa0275680 |
| chr2_3 | mRNA | 7821691 | 7825911 | 7821691 | ID=Msa0275680-mRNA-1;Parent=Msa0275680;Name=Msa0275680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=159|1|1|1|1|1|8|454|375 |
| chr2_3 | exon | 7821691 | 7822171 | 7821691 | ID=Msa0275680-mRNA-1:exon:3568;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7822766 | 7823105 | 7822766 | ID=Msa0275680-mRNA-1:exon:3567;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7823189 | 7823296 | 7823189 | ID=Msa0275680-mRNA-1:exon:3566;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7823730 | 7823998 | 7823730 | ID=Msa0275680-mRNA-1:exon:3565;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7824122 | 7824233 | 7824122 | ID=Msa0275680-mRNA-1:exon:3564;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7824333 | 7824395 | 7824333 | ID=Msa0275680-mRNA-1:exon:3563;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7824475 | 7824521 | 7824475 | ID=Msa0275680-mRNA-1:exon:3562;Parent=Msa0275680-mRNA-1 |
| chr2_3 | exon | 7825591 | 7825911 | 7825591 | ID=Msa0275680-mRNA-1:exon:3561;Parent=Msa0275680-mRNA-1 |
| chr2_3 | five_prime_UTR | 7825753 | 7825911 | 7825753 | ID=Msa0275680-mRNA-1:five_prime_utr;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7825591 | 7825752 | 7825591 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7824475 | 7824521 | 7824475 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7824333 | 7824395 | 7824333 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7824122 | 7824233 | 7824122 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7823730 | 7823998 | 7823730 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7823189 | 7823296 | 7823189 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7822766 | 7823105 | 7822766 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | CDS | 7822145 | 7822171 | 7822145 | ID=Msa0275680-mRNA-1:cds;Parent=Msa0275680-mRNA-1 |
| chr2_3 | three_prime_UTR | 7821691 | 7822144 | 7821691 | ID=Msa0275680-mRNA-1:three_prime_utr;Parent=Msa0275680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
