AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0198250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198250 MtrunA17_Chr2g0291591 89.661 561 36 1 1 561 25 563 0.0 1042
Msa0198250 MtrunA17_Chr2g0291581 50.156 640 304 5 46 681 55 683 0.0 645
Msa0198250 MtrunA17_Chr1g0207551 33.868 623 400 6 61 680 33 646 3.05e-116 368
Msa0198250 MtrunA17_Chr2g0296781 35.443 553 349 5 77 625 12 560 3.12e-116 365
Msa0198250 MtrunA17_Chr3g0080351 32.132 638 383 7 61 680 75 680 2.23e-113 361
Msa0198250 MtrunA17_Chr2g0329031 32.800 625 390 8 62 678 14 616 2.86e-111 353
Msa0198250 MtrunA17_Chr5g0441581 33.987 612 375 8 61 661 31 624 1.01e-110 350
Msa0198250 MtrunA17_Chr5g0448761 33.126 643 393 12 61 680 59 687 4.75e-108 345
Msa0198250 MtrunA17_Chr6g0477261 37.778 450 276 3 178 625 2 449 6.85e-106 337
Msa0198250 MtrunA17_Chr1g0202341 31.045 641 415 11 56 681 45 673 8.78e-106 337
Msa0198250 MtrunA17_Chr1g0196541 33.627 568 361 7 66 625 1 560 1.76e-103 332
Msa0198250 MtrunA17_Chr5g0440451 30.327 643 409 12 60 681 41 665 1.34e-87 295
Msa0198250 MtrunA17_Chr8g0363841 29.762 588 383 8 61 628 7 584 2.63e-87 288
Msa0198250 MtrunA17_Chr2g0287061 31.130 575 345 10 61 630 182 710 1.93e-86 288
Msa0198250 MtrunA17_Chr5g0448511 33.621 464 298 6 222 681 3 460 1.74e-85 280
Msa0198250 MtrunA17_Chr3g0118611 32.981 473 293 8 231 692 118 577 8.48e-75 256
Msa0198250 MtrunA17_Chr2g0324011 26.620 571 394 9 61 619 9 566 4.60e-70 239
Msa0198250 MtrunA17_Chr2g0287651 27.320 582 395 11 66 634 79 645 1.94e-68 241
Msa0198250 MtrunA17_Chr1g0203721 28.374 578 373 13 65 621 66 623 5.63e-66 234
Msa0198250 MtrunA17_Chr1g0203051 28.624 545 365 12 74 608 91 621 1.27e-65 229
Msa0198250 MtrunA17_Chr6g0458391 26.341 615 400 12 29 619 178 763 3.19e-63 224
Msa0198250 MtrunA17_Chr6g0458391 35.556 135 80 3 59 186 88 222 3.65e-11 66.6
Msa0198250 MtrunA17_Chr2g0276841 25.291 601 399 15 49 626 57 630 3.77e-54 198
Msa0198250 MtrunA17_Chr3g0082121 26.817 578 378 15 58 619 40 588 7.02e-53 194
Msa0198250 MtrunA17_Chr1g0198761 25.758 594 371 16 64 619 49 610 6.20e-52 192
Msa0198250 MtrunA17_Chr2g0294841 24.561 627 423 16 11 617 8 604 2.60e-46 176
Msa0198250 MtrunA17_Chr2g0290391 24.382 607 417 15 36 619 24 611 9.45e-43 165
Msa0198250 MtrunA17_Chr7g0258861 28.920 287 195 4 61 339 9 294 1.61e-39 148
Msa0198250 MtrunA17_Chr5g0431001 26.196 439 272 13 58 462 57 477 3.93e-34 137
Msa0198250 MtrunA17_Chr1g0164591 26.582 316 205 7 144 449 10 308 6.80e-30 120
Msa0198250 MtrunA17_Chr2g0329421 34.014 147 90 3 55 196 22 166 3.93e-15 75.1
Msa0198250 MtrunA17_Chr4g0033611 36.538 104 63 1 61 161 75 178 4.00e-15 75.9
Msa0198250 MtrunA17_Chr2g0329361 29.032 155 94 3 11 159 20 164 1.22e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198250 AT1G80010.1 53.528 652 286 7 41 680 74 720 0.0 696
Msa0198250 AT1G52520.1 50.147 678 297 13 25 681 42 699 0.0 643
Msa0198250 AT4G15090.1 33.387 620 398 6 61 674 50 660 2.77e-120 379
Msa0198250 AT4G15090.5 33.387 620 398 6 61 674 50 660 2.77e-120 379
Msa0198250 AT4G15090.3 33.387 620 398 6 61 674 50 660 2.77e-120 379
Msa0198250 AT4G15090.2 33.387 620 398 6 61 674 50 660 2.77e-120 379
Msa0198250 AT4G15090.4 33.387 620 398 6 61 674 50 660 2.77e-120 379
Msa0198250 AT1G76320.3 34.138 621 383 9 66 680 1 601 2.41e-112 354
Msa0198250 AT1G76320.1 34.138 621 383 9 66 680 1 601 1.23e-111 354
Msa0198250 AT1G76320.4 34.138 621 383 9 66 680 1 601 1.23e-111 354
Msa0198250 AT1G76320.2 34.138 621 383 9 66 680 1 601 1.76e-111 353
Msa0198250 AT3G22170.2 29.709 653 409 8 61 695 69 689 1.09e-104 338
Msa0198250 AT3G22170.1 29.709 653 409 8 61 695 69 689 1.09e-104 338
Msa0198250 AT4G38180.1 32.982 570 366 8 61 621 72 634 1.24e-103 334
Msa0198250 AT2G27110.2 29.586 676 417 15 13 681 16 639 2.26e-92 306
Msa0198250 AT2G27110.1 29.586 676 417 15 13 681 16 639 2.26e-92 306
Msa0198250 AT5G18960.2 29.430 632 402 9 47 677 196 784 5.67e-90 298
Msa0198250 AT5G18960.2 30.159 126 79 1 61 186 42 158 8.71e-13 72.4
Msa0198250 AT5G18960.1 29.430 632 402 9 47 677 196 784 5.67e-90 298
Msa0198250 AT5G18960.1 30.159 126 79 1 61 186 42 158 8.71e-13 72.4
Msa0198250 AT3G06250.2 28.834 652 408 10 35 677 156 760 5.50e-88 292
Msa0198250 AT3G06250.2 30.405 148 91 3 61 208 27 162 6.95e-13 72.8
Msa0198250 AT3G06250.1 28.834 652 408 10 35 677 156 760 5.50e-88 292
Msa0198250 AT3G06250.1 30.405 148 91 3 61 208 27 162 6.95e-13 72.8
Msa0198250 AT3G06250.3 28.834 652 408 10 35 677 156 760 5.50e-88 292
Msa0198250 AT3G06250.3 30.405 148 91 3 61 208 27 162 6.95e-13 72.8
Msa0198250 AT2G32250.5 31.655 556 332 6 65 618 41 550 1.23e-87 291
Msa0198250 AT2G32250.2 31.655 556 332 6 65 618 41 550 1.84e-87 292
Msa0198250 AT2G32250.4 31.655 556 332 6 65 618 41 550 1.84e-87 292
Msa0198250 AT2G32250.6 31.362 558 331 7 65 618 41 550 2.40e-87 291
Msa0198250 AT2G32250.1 31.362 558 331 7 65 618 41 550 2.40e-87 291
Msa0198250 AT2G32250.3 31.362 558 331 7 65 618 41 550 2.40e-87 291
Msa0198250 AT2G32250.7 31.532 555 332 6 66 618 1 509 8.61e-87 289
Msa0198250 AT2G32250.8 31.532 555 332 6 66 618 1 509 9.36e-87 289
Msa0198250 AT2G27110.3 32.645 484 305 7 205 681 25 494 5.60e-85 283
Msa0198250 AT4G19990.7 29.853 613 367 10 43 635 16 585 1.13e-83 281
Msa0198250 AT4G19990.3 30.236 592 350 10 64 635 23 571 1.14e-83 280
Msa0198250 AT4G19990.4 30.236 592 350 10 64 635 23 571 1.14e-83 280
Msa0198250 AT4G19990.5 30.236 592 350 10 64 635 23 571 1.85e-83 280
Msa0198250 AT4G19990.6 30.236 592 350 10 64 635 23 571 2.19e-83 280
Msa0198250 AT4G19990.2 30.236 592 350 10 64 635 23 571 2.19e-83 280
Msa0198250 AT4G19990.1 30.813 529 317 9 113 635 29 514 3.59e-76 259
Msa0198250 AT4G38170.1 30.998 471 296 9 233 692 19 471 5.07e-72 244
Msa0198250 AT1G10240.2 25.389 579 392 13 60 618 46 604 4.52e-53 195
Msa0198250 AT1G10240.1 25.389 579 392 13 60 618 46 604 4.52e-53 195
Msa0198250 AT5G28530.1 26.667 600 384 19 62 632 55 627 4.04e-46 175
Msa0198250 AT5G28530.3 26.167 600 383 18 62 632 55 623 2.39e-45 172
Msa0198250 AT5G28530.2 26.167 600 383 18 62 632 55 623 2.39e-45 172
Msa0198250 AT5G28530.4 26.488 336 217 9 304 632 252 564 2.60e-24 108
Msa0198250 AT5G28530.5 25.893 336 215 9 304 632 252 560 1.79e-23 105
Msa0198250 AT3G59470.3 37.037 108 65 1 61 165 69 176 4.30e-15 76.3
Msa0198250 AT3G59470.1 37.037 108 65 1 61 165 69 176 4.30e-15 76.3
Msa0198250 AT3G59470.2 37.037 108 65 1 61 165 81 188 5.03e-15 76.3

Find 167 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACCAAATAATGATTT+TGG 0.088603 2_1:-16841421 None:intergenic
GACAATTGAGGAACATATTT+TGG 0.117184 2_1:+16840220 Msa0198250:CDS
GATATCCCAAAATCATTATT+TGG 0.175601 2_1:+16841415 Msa0198250:CDS
TGGTTGTCTGGTGCAGTTTC+AGG 0.204396 2_1:+16840575 Msa0198250:CDS
TGCACGAAAGCACTTATTAA+TGG 0.206460 2_1:-16842071 None:intergenic
AATAGCTATGCCAGGGAAAT+TGG 0.208039 2_1:+16839679 Msa0198250:CDS
AGGGCTGCATATAGTTATTT+TGG 0.210404 2_1:+16840258 Msa0198250:CDS
CAAAGAGGGATCAACAAATA+TGG 0.210429 2_1:+16841908 Msa0198250:three_prime_UTR
CAAATATGGGTCATGGCTTT+AGG 0.218583 2_1:+16841922 Msa0198250:three_prime_UTR
AAAATCATTATTTGGTTTCT+TGG 0.223441 2_1:+16841423 Msa0198250:CDS
TTTGGATTGATTCTAGTTCT+AGG 0.231462 2_1:+16840238 Msa0198250:CDS
AACTGAAGCTCTTGATGATT+TGG 0.234723 2_1:+16840905 Msa0198250:CDS
CGGTTTGTAACAATAGTTTC+TGG 0.236513 2_1:-16840465 None:intergenic
AATTAGGACTCACCAGTTTA+TGG 0.247549 2_1:-16840167 None:intergenic
ATTTATAGAGTCTTTGAATA+AGG 0.281326 2_1:+16841451 Msa0198250:CDS
ACTTCAGCACTTTGAACTTA+AGG 0.313892 2_1:+16842133 Msa0198250:three_prime_UTR
TAGATGAATTTGAAAGAGAT+TGG 0.315956 2_1:+16840652 Msa0198250:CDS
AGTCGGCTCAACCTTTCTTT+TGG 0.323275 2_1:-16839974 None:intergenic
CCATTTGGGTCTATTCAATC+AGG 0.337710 2_1:-16842168 None:intergenic
ACTGTAGATGCTTCCGGTTA+TGG 0.346656 2_1:+16840039 Msa0198250:CDS
CTCTACTATTGCACATTCTA+TGG 0.347062 2_1:-16840496 None:intergenic
AAATGATCAAAACACTGAAC+TGG 0.347410 2_1:-16841356 None:intergenic
CTGTAGATGCTTCCGGTTAT+GGG 0.351570 2_1:+16840040 Msa0198250:CDS
CTTCAGCACTTTGAACTTAA+GGG 0.357282 2_1:+16842134 Msa0198250:three_prime_UTR
AGTCAATTGTTTGAGATTGA+TGG 0.375923 2_1:+16839520 Msa0198250:CDS
CTCTGTCCTCGTGCAAGCTT+CGG 0.376248 2_1:-16840719 None:intergenic
GCACGAGGACAGAGAGCTTT+GGG 0.378976 2_1:+16840728 Msa0198250:CDS
CTTCTCTTTACTGTTACGTT+TGG 0.380146 2_1:-16839731 None:intergenic
TTACTTCTGCCACCATAAAC+TGG 0.384916 2_1:+16840155 Msa0198250:CDS
AAATATGGGTCATGGCTTTA+GGG 0.385928 2_1:+16841923 Msa0198250:three_prime_UTR
AACATCCATGATTACTACTA+TGG 0.390907 2_1:+16842038 Msa0198250:three_prime_UTR
TTGGATTGATTCTAGTTCTA+GGG 0.391970 2_1:+16840239 Msa0198250:CDS
AAATGCCTATCATTTCTTAC+CGG 0.393224 2_1:-16841122 None:intergenic
TGAGAGTAGTGGAATCTAAT+AGG 0.393466 2_1:+16839857 Msa0198250:CDS
ATATTTCGAGCAGGGTTTGA+TGG 0.395255 2_1:-16841729 None:intergenic
TTATTGCATAATGTTGGGTC+AGG 0.399471 2_1:-16840680 None:intergenic
TGCACGAGGACAGAGAGCTT+TGG 0.400964 2_1:+16840727 Msa0198250:CDS
GATTTCTTATTGCATAATGT+TGG 0.401141 2_1:-16840686 None:intergenic
GATGGTGGCGAACATGAAAA+TGG 0.403685 2_1:+16839538 Msa0198250:CDS
TGGAATTTCTAATTACGAAA+AGG 0.404269 2_1:+16840782 Msa0198250:CDS
TCAAACTCCACTCCCTCAAC+AGG 0.406663 2_1:-16839628 None:intergenic
GGATGGAGAGAAAACCCATT+TGG 0.407564 2_1:-16842183 None:intergenic
CTTGCAATAGACAAATTCTA+TGG 0.410394 2_1:-16840536 None:intergenic
AGAATTTGAGCTCCCATAAC+CGG 0.414377 2_1:-16840052 None:intergenic
ATTTCTTATTGCATAATGTT+GGG 0.422728 2_1:-16840685 None:intergenic
ATGCCAACTGTAGATGCTTC+CGG 0.429407 2_1:+16840033 Msa0198250:CDS
CTATTCGTGTTAAATCTTCG+TGG 0.432290 2_1:+16839707 Msa0198250:CDS
GGAATTTCTAATTACGAAAA+GGG 0.436213 2_1:+16840783 Msa0198250:CDS
AATTTGTGAGACGCTGAAAC+AGG 0.436325 2_1:-16841045 None:intergenic
AATGTGTCCTTGGAGTAAAC+TGG 0.441443 2_1:-16840753 None:intergenic
GGTTTGTAACAATAGTTTCT+GGG 0.441868 2_1:-16840464 None:intergenic
CTCTTTCAGGATCAAATGAA+TGG 0.442050 2_1:-16839912 None:intergenic
ACTTCAAAGGCTACCTATGC+AGG 0.442185 2_1:+16841201 Msa0198250:CDS
ATTCCACTAGTTGCATTTGT+TGG 0.443557 2_1:+16840327 Msa0198250:CDS
AGATGAATTTGAAAGAGATT+GGG 0.444699 2_1:+16840653 Msa0198250:CDS
GCAGATCATCCGTGGTTGTC+TGG 0.446361 2_1:+16840563 Msa0198250:CDS
CTGATTGAATAGACCCAAAT+GGG 0.446453 2_1:+16842169 Msa0198250:three_prime_UTR
CTCCACTCCCTCAACAGGTT+GGG 0.449152 2_1:-16839623 None:intergenic
GATGGAGAGAAAACCCATTT+GGG 0.454882 2_1:-16842182 None:intergenic
TGTAATTGCTTTAACTTCAA+AGG 0.458366 2_1:+16841188 Msa0198250:CDS
AATAGTTTGTCTTCTAAGAC+TGG 0.459031 2_1:+16841792 Msa0198250:exon
GATGCAGGTTGCAGCTGTTA+AGG 0.463308 2_1:+16841706 Msa0198250:intron
AGAACATCAAGGGGAAGAAC+CGG 0.463849 2_1:+16841103 Msa0198250:CDS
CAACACCATAGTAGTAATCA+TGG 0.474207 2_1:-16842043 None:intergenic
TAGTGGAATCTAATAGGTGG+AGG 0.476847 2_1:+16839863 Msa0198250:CDS
AAAGAGGGATCAACAAATAT+GGG 0.478243 2_1:+16841909 Msa0198250:three_prime_UTR
CCTGATTGAATAGACCCAAA+TGG 0.479246 2_1:+16842168 Msa0198250:three_prime_UTR
TGTCCGACTGATTCTTAGCT+CGG 0.481381 2_1:+16841990 Msa0198250:three_prime_UTR
ATAGCTATTATAATAGTTGT+AGG 0.483777 2_1:-16839665 None:intergenic
CGCCCAACCTGTTGAGGGAG+TGG 0.485119 2_1:+16839621 Msa0198250:CDS
TGCTCGAAATATGTGTTTGG+TGG 0.487448 2_1:+16841740 Msa0198250:CDS
CCCTGCTCGAAATATGTGTT+TGG 0.491484 2_1:+16841737 Msa0198250:CDS
ACATCATCACCACCTCATCT+TGG 0.493280 2_1:-16841019 None:intergenic
GTCTTGTGTTGTAGTTGTGA+AGG 0.496440 2_1:+16839763 Msa0198250:CDS
TAGAGAGTTGCAACTCATAG+TGG 0.499235 2_1:-16840965 None:intergenic
CGTAGGAAAGAAACAAGAAC+AGG 0.499540 2_1:+16839814 Msa0198250:CDS
AGACATTTGAAACGTATACT+TGG 0.502054 2_1:+16840403 Msa0198250:CDS
ATCCTTAATTACAATGGTGT+GGG 0.502114 2_1:+16841236 Msa0198250:CDS
ACTATTATAATAGCTATGCC+AGG 0.505200 2_1:+16839671 Msa0198250:CDS
TTATCATAATTCATGTATGT+AGG 0.507183 2_1:-16841764 None:intergenic
AAGAACCGGTAAGAAATGAT+AGG 0.508332 2_1:+16841117 Msa0198250:CDS
ACCAAACACATATTTCGAGC+AGG 0.509508 2_1:-16841738 None:intergenic
TTTGAAAATTTCTTCAGCAA+CGG 0.512540 2_1:-16841889 None:intergenic
CACATAGGAGGATGGACAGT+GGG 0.512891 2_1:+16839950 Msa0198250:CDS
CAAATTCTATGGTGAGCCCT+CGG 0.514324 2_1:-16840525 None:intergenic
ATTACAAATGCAACGTACTT+CGG 0.514793 2_1:-16841171 None:intergenic
TACTATTTCCAGATAGATGA+GGG 0.522528 2_1:+16839433 None:intergenic
TAAGCAACTACTTGAGGTTG+AGG 0.526880 2_1:+16839468 Msa0198250:CDS
GGACAGTGGGGCCAAAAGAA+AGG 0.531952 2_1:+16839963 Msa0198250:CDS
ATACTTGGTTATTTAGAGCA+TGG 0.532023 2_1:+16840418 Msa0198250:CDS
GGGAGCTCAAATTCTAATGA+AGG 0.533763 2_1:+16840060 Msa0198250:CDS
ATCAAAACACTGAACTGGGT+TGG 0.536498 2_1:-16841351 None:intergenic
AGACTACGCCCAACCTGTTG+AGG 0.540785 2_1:+16839615 Msa0198250:CDS
AAATTCTATGGTGAGCCCTC+GGG 0.542802 2_1:-16840524 None:intergenic
TATCCTTAATTACAATGGTG+TGG 0.549164 2_1:+16841235 Msa0198250:CDS
ACTCCACTCCCTCAACAGGT+TGG 0.553844 2_1:-16839624 None:intergenic
GACTACGCCCAACCTGTTGA+GGG 0.556672 2_1:+16839616 Msa0198250:CDS
GTGATGGATCTGAATGATGA+TGG 0.557426 2_1:+16840198 Msa0198250:CDS
AATAGCAAATCCAATTTCCC+TGG 0.562021 2_1:-16839689 None:intergenic
CCAAACACATATTTCGAGCA+GGG 0.562427 2_1:-16841737 None:intergenic
CTGATTCTTAGCTCGGAAGA+AGG 0.563727 2_1:+16841997 Msa0198250:three_prime_UTR
TATACAAGGCATGCCTGCAT+AGG 0.564010 2_1:-16841214 None:intergenic
GGAAGATGAGGCATTTCAGA+TGG 0.566330 2_1:+16840596 Msa0198250:CDS
TATTGCATAATGTTGGGTCA+GGG 0.567535 2_1:-16840679 None:intergenic
ACATGGTAAAAGAACATCAA+GGG 0.568150 2_1:+16841093 Msa0198250:CDS
CGAGTCTATAGTGACATACA+TGG 0.575473 2_1:+16841076 Msa0198250:CDS
TTGTATATCCTTAATTACAA+TGG 0.575751 2_1:+16841230 Msa0198250:CDS
CACATTCTATGGTCTTACAT+CGG 0.577150 2_1:-16840485 None:intergenic
CTCTAAATCACATAGGAGGA+TGG 0.578313 2_1:+16839942 Msa0198250:CDS
GTTTGTAACAATAGTTTCTG+GGG 0.579296 2_1:-16840463 None:intergenic
CATTTGGGTCTATTCAATCA+GGG 0.580053 2_1:-16842167 None:intergenic
TTTGTAACAATAGTTTCTGG+GGG 0.582883 2_1:-16840462 None:intergenic
TTACTATTTCCAGATAGATG+AGG 0.583204 2_1:+16839432 None:intergenic
GTGGCGAACATGAAAATGGA+AGG 0.585092 2_1:+16839542 Msa0198250:CDS
ACTACTTGAGGTTGAGGACA+AGG 0.585298 2_1:+16839474 Msa0198250:CDS
AATGATCAAAACACTGAACT+GGG 0.585970 2_1:-16841355 None:intergenic
GGATCAACAAATATGGGTCA+TGG 0.587419 2_1:+16841915 Msa0198250:three_prime_UTR
ACAAAGTAAGCAACTACTTG+AGG 0.589391 2_1:+16839462 Msa0198250:CDS
TCCTTAATTACAATGGTGTG+GGG 0.589480 2_1:+16841237 Msa0198250:CDS
ATAAAGAAGCTAATAGTCGT+AGG 0.594056 2_1:+16839797 Msa0198250:CDS
TACATGGTAAAAGAACATCA+AGG 0.596297 2_1:+16841092 Msa0198250:CDS
ACACCAACAAATGCAACTAG+TGG 0.596327 2_1:-16840330 None:intergenic
TTGGGCTCCAGTTTACTCCA+AGG 0.596913 2_1:+16840746 Msa0198250:CDS
AAAACTCTAAATCACATAGG+AGG 0.599156 2_1:+16839938 Msa0198250:CDS
GCTCGAAATATGTGTTTGGT+GGG 0.599382 2_1:+16841741 Msa0198250:CDS
CGACTCTAGATGTTGAAGTA+CGG 0.600367 2_1:+16839992 Msa0198250:CDS
GGAATCTAATAGGTGGAGGG+TGG 0.600823 2_1:+16839867 Msa0198250:CDS
CTTGACAAAATATAATGACA+TGG 0.602201 2_1:-16841266 None:intergenic
CAAGTCTTGCAGATCATCCG+TGG 0.605006 2_1:+16840555 Msa0198250:CDS
ATTCAATAAGTTCCAAGATG+AGG 0.606495 2_1:+16841007 Msa0198250:CDS
CATAGAATGTGCAATAGTAG+AGG 0.608377 2_1:+16840497 Msa0198250:CDS
GGTATGCAAGTAGTTGAAGA+AGG 0.610848 2_1:+16841389 Msa0198250:CDS
TAACCGGAAGCATCTACAGT+TGG 0.612183 2_1:-16840036 None:intergenic
ACTATGACTGTCAACTCCCG+TGG 0.616006 2_1:-16839572 None:intergenic
GAGTAGTGGAATCTAATAGG+TGG 0.616272 2_1:+16839860 Msa0198250:CDS
CAATAAGTTCCAAGATGAGG+TGG 0.616780 2_1:+16841010 Msa0198250:CDS
AGCTCAAATTCTAATGAAGG+AGG 0.617343 2_1:+16840063 Msa0198250:CDS
CGCAAAACTCTAAATCACAT+AGG 0.623536 2_1:+16839935 Msa0198250:CDS
AATGGAAGGGAGGAAACCAC+GGG 0.626247 2_1:+16839556 Msa0198250:CDS
GGTGCAGTTTCAGGAAGATG+AGG 0.635119 2_1:+16840584 Msa0198250:CDS
CTTCCGAGCTAAGAATCAGT+CGG 0.637499 2_1:-16841993 None:intergenic
AAATGGAAGGGAGGAAACCA+CGG 0.638573 2_1:+16839555 Msa0198250:CDS
CCTTAATTACAATGGTGTGG+GGG 0.643743 2_1:+16841238 Msa0198250:CDS
ATTGTAATTAAGGATATACA+AGG 0.644132 2_1:-16841228 None:intergenic
CATGGTAAAAGAACATCAAG+GGG 0.645016 2_1:+16841094 Msa0198250:CDS
CGTACTTCAACATCTAGAGT+CGG 0.648024 2_1:-16839991 None:intergenic
CTATTATAATAGCTATGCCA+GGG 0.648310 2_1:+16839672 Msa0198250:CDS
TTTGTTGGTGTTAATCACCA+TGG 0.653331 2_1:+16840342 Msa0198250:CDS
ACATTGTCAGAGCTGAGATG+TGG 0.654932 2_1:-16841320 None:intergenic
TAGGACTCACCAGTTTATGG+TGG 0.657453 2_1:-16840164 None:intergenic
CAATTGTTTGAGATTGATGG+TGG 0.658357 2_1:+16839523 Msa0198250:CDS
CGGACAAAAGCACATTCTCA+CGG 0.659870 2_1:-16841973 None:intergenic
AGTGGAATCTAATAGGTGGA+GGG 0.661358 2_1:+16839864 Msa0198250:CDS
TTTGATCATTTGTACAAACG+TGG 0.664936 2_1:+16841368 Msa0198250:CDS
AATGATTAGACTGAGAGTAG+TGG 0.669263 2_1:+16839846 Msa0198250:CDS
TGGCGAACATGAAAATGGAA+GGG 0.678993 2_1:+16839543 Msa0198250:CDS
CGAACATGAAAATGGAAGGG+AGG 0.681120 2_1:+16839546 Msa0198250:CDS
TTGTAACAATAGTTTCTGGG+GGG 0.684006 2_1:-16840461 None:intergenic
CTACTTGAGGTTGAGGACAA+GGG 0.687690 2_1:+16839475 Msa0198250:CDS
AAAGCTCCGAAGCTTGCACG+AGG 0.688357 2_1:+16840713 Msa0198250:CDS
CTAGCAAAACAGATTGACCA+TGG 0.689075 2_1:-16840359 None:intergenic
GAAACTGCACCAGACAACCA+CGG 0.692031 2_1:-16840572 None:intergenic
TCACATAGGAGGATGGACAG+TGG 0.701404 2_1:+16839949 Msa0198250:CDS
ACTATTTCCAGATAGATGAG+GGG 0.701880 2_1:+16839434 None:intergenic
ACATAGGAGGATGGACAGTG+GGG 0.705660 2_1:+16839951 Msa0198250:CDS
CGTAACAGTAAAGAGAAGCG+TGG 0.709182 2_1:+16839736 Msa0198250:CDS
TGAATGATGATGGACAATTG+AGG 0.749302 2_1:+16840208 Msa0198250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGCTATTATAATAGTTGT+AGG - chr2_1:16839668-16839687 None:intergenic 20.0%
!!! CAAATTCATCTAATGTTTTA+GGG - chr2_1:16840644-16840663 None:intergenic 20.0%
!!! TCAAATTCATCTAATGTTTT+AGG - chr2_1:16840645-16840664 None:intergenic 20.0%
!! ATTTCTTATTGCATAATGTT+GGG - chr2_1:16840688-16840707 None:intergenic 20.0%
!! ATTGTAATTAAGGATATACA+AGG - chr2_1:16841231-16841250 None:intergenic 20.0%
!! TTGTATATCCTTAATTACAA+TGG + chr2_1:16841230-16841249 Msa0198250:CDS 20.0%
!!! AGAAACCAAATAATGATTTT+GGG - chr2_1:16841423-16841442 None:intergenic 20.0%
!!! AAGAAACCAAATAATGATTT+TGG - chr2_1:16841424-16841443 None:intergenic 20.0%
!!! AAAATCATTATTTGGTTTCT+TGG + chr2_1:16841423-16841442 Msa0198250:CDS 20.0%
!! ATTTATAGAGTCTTTGAATA+AGG + chr2_1:16841451-16841470 Msa0198250:CDS 20.0%
!! TTATCATAATTCATGTATGT+AGG - chr2_1:16841767-16841786 None:intergenic 20.0%
!!! TCCTAATTTTTTCTATGTGA+TGG + chr2_1:16840182-16840201 Msa0198250:CDS 25.0%
! TCCATCACATAGAAAAAATT+AGG - chr2_1:16840186-16840205 None:intergenic 25.0%
! TAGATGAATTTGAAAGAGAT+TGG + chr2_1:16840652-16840671 Msa0198250:CDS 25.0%
! AGATGAATTTGAAAGAGATT+GGG + chr2_1:16840653-16840672 Msa0198250:CDS 25.0%
! GATTTCTTATTGCATAATGT+TGG - chr2_1:16840689-16840708 None:intergenic 25.0%
! TGGAATTTCTAATTACGAAA+AGG + chr2_1:16840782-16840801 Msa0198250:CDS 25.0%
! GGAATTTCTAATTACGAAAA+GGG + chr2_1:16840783-16840802 Msa0198250:CDS 25.0%
!!! ATCTATGATTCCCTTTTTTA+AGG + chr2_1:16840809-16840828 Msa0198250:CDS 25.0%
!!! TCTATGATTCCCTTTTTTAA+GGG + chr2_1:16840810-16840829 Msa0198250:CDS 25.0%
!! TGTAATTGCTTTAACTTCAA+AGG + chr2_1:16841188-16841207 Msa0198250:CDS 25.0%
! CTTGACAAAATATAATGACA+TGG - chr2_1:16841269-16841288 None:intergenic 25.0%
!! GTCATTATATTTTGTCAAGA+TGG + chr2_1:16841270-16841289 Msa0198250:CDS 25.0%
!! ATTATATTTTGTCAAGATGG+AGG + chr2_1:16841273-16841292 Msa0198250:CDS 25.0%
! GATATCCCAAAATCATTATT+TGG + chr2_1:16841415-16841434 Msa0198250:CDS 25.0%
! AGAACAATTTATGTATCAGA+AGG - chr2_1:16841568-16841587 None:intergenic 25.0%
!! ATAGAATGTGAATGTCTTTT+TGG + chr2_1:16841635-16841654 Msa0198250:intron 25.0%
! TTTGAAAATTTCTTCAGCAA+CGG - chr2_1:16841892-16841911 None:intergenic 25.0%
! AGTCAATTGTTTGAGATTGA+TGG + chr2_1:16839520-16839539 Msa0198250:CDS 30.0%
ACTATTATAATAGCTATGCC+AGG + chr2_1:16839671-16839690 Msa0198250:CDS 30.0%
CTATTATAATAGCTATGCCA+GGG + chr2_1:16839672-16839691 Msa0198250:CDS 30.0%
ATAAAGAAGCTAATAGTCGT+AGG + chr2_1:16839797-16839816 Msa0198250:CDS 30.0%
AAAACTCTAAATCACATAGG+AGG + chr2_1:16839938-16839957 Msa0198250:CDS 30.0%
! GACAATTGAGGAACATATTT+TGG + chr2_1:16840220-16840239 Msa0198250:CDS 30.0%
!! TTTGGATTGATTCTAGTTCT+AGG + chr2_1:16840238-16840257 Msa0198250:CDS 30.0%
!! TTGGATTGATTCTAGTTCTA+GGG + chr2_1:16840239-16840258 Msa0198250:CDS 30.0%
!!! ATATAGTTATTTTGGTGACG+TGG + chr2_1:16840266-16840285 Msa0198250:CDS 30.0%
! AGACATTTGAAACGTATACT+TGG + chr2_1:16840403-16840422 Msa0198250:CDS 30.0%
! ATACTTGGTTATTTAGAGCA+TGG + chr2_1:16840418-16840437 Msa0198250:CDS 30.0%
! TTTGTAACAATAGTTTCTGG+GGG - chr2_1:16840465-16840484 None:intergenic 30.0%
GTTTGTAACAATAGTTTCTG+GGG - chr2_1:16840466-16840485 None:intergenic 30.0%
GGTTTGTAACAATAGTTTCT+GGG - chr2_1:16840467-16840486 None:intergenic 30.0%
CTTGCAATAGACAAATTCTA+TGG - chr2_1:16840539-16840558 None:intergenic 30.0%
ATTCAATAAGTTCCAAGATG+AGG + chr2_1:16841007-16841026 Msa0198250:CDS 30.0%
TACATGGTAAAAGAACATCA+AGG + chr2_1:16841092-16841111 Msa0198250:CDS 30.0%
ACATGGTAAAAGAACATCAA+GGG + chr2_1:16841093-16841112 Msa0198250:CDS 30.0%
AAATGCCTATCATTTCTTAC+CGG - chr2_1:16841125-16841144 None:intergenic 30.0%
ATTACAAATGCAACGTACTT+CGG - chr2_1:16841174-16841193 None:intergenic 30.0%
TATCCTTAATTACAATGGTG+TGG + chr2_1:16841235-16841254 Msa0198250:CDS 30.0%
ATCCTTAATTACAATGGTGT+GGG + chr2_1:16841236-16841255 Msa0198250:CDS 30.0%
AATGATCAAAACACTGAACT+GGG - chr2_1:16841358-16841377 None:intergenic 30.0%
AAATGATCAAAACACTGAAC+TGG - chr2_1:16841359-16841378 None:intergenic 30.0%
TTTGATCATTTGTACAAACG+TGG + chr2_1:16841368-16841387 Msa0198250:CDS 30.0%
ATGCTAATATGTTGTGCATA+AGG + chr2_1:16841517-16841536 Msa0198250:intron 30.0%
! ATTTATGTATCAGAAGGCAT+GGG - chr2_1:16841562-16841581 None:intergenic 30.0%
AATTTATGTATCAGAAGGCA+TGG - chr2_1:16841563-16841582 None:intergenic 30.0%
!! AATAGTTTGTCTTCTAAGAC+TGG + chr2_1:16841792-16841811 Msa0198250:exon 30.0%
! TGCTGAAGAAATTTTCAAAG+AGG + chr2_1:16841893-16841912 Msa0198250:three_prime_UTR 30.0%
! GCTGAAGAAATTTTCAAAGA+GGG + chr2_1:16841894-16841913 Msa0198250:three_prime_UTR 30.0%
AAAGAGGGATCAACAAATAT+GGG + chr2_1:16841909-16841928 Msa0198250:three_prime_UTR 30.0%
AACATCCATGATTACTACTA+TGG + chr2_1:16842038-16842057 Msa0198250:three_prime_UTR 30.0%
ACAAAGTAAGCAACTACTTG+AGG + chr2_1:16839462-16839481 Msa0198250:CDS 35.0%
! CAATTGTTTGAGATTGATGG+TGG + chr2_1:16839523-16839542 Msa0198250:CDS 35.0%
AATAGCAAATCCAATTTCCC+TGG - chr2_1:16839692-16839711 None:intergenic 35.0%
CTATTCGTGTTAAATCTTCG+TGG + chr2_1:16839707-16839726 Msa0198250:CDS 35.0%
CTTCTCTTTACTGTTACGTT+TGG - chr2_1:16839734-16839753 None:intergenic 35.0%
AATGATTAGACTGAGAGTAG+TGG + chr2_1:16839846-16839865 Msa0198250:CDS 35.0%
! TGAGAGTAGTGGAATCTAAT+AGG + chr2_1:16839857-16839876 Msa0198250:CDS 35.0%
CTCTTTCAGGATCAAATGAA+TGG - chr2_1:16839915-16839934 None:intergenic 35.0%
CGCAAAACTCTAAATCACAT+AGG + chr2_1:16839935-16839954 Msa0198250:CDS 35.0%
AGCTCAAATTCTAATGAAGG+AGG + chr2_1:16840063-16840082 Msa0198250:CDS 35.0%
!!! TTTTTTTAGCTTCAGTCTCC+TGG - chr2_1:16840112-16840131 None:intergenic 35.0%
AGGAGACTGAAGCTAAAAAA+AGG + chr2_1:16840111-16840130 Msa0198250:CDS 35.0%
AATTAGGACTCACCAGTTTA+TGG - chr2_1:16840170-16840189 None:intergenic 35.0%
!! TGAATGATGATGGACAATTG+AGG + chr2_1:16840208-16840227 Msa0198250:CDS 35.0%
! AGGGCTGCATATAGTTATTT+TGG + chr2_1:16840258-16840277 Msa0198250:CDS 35.0%
ATTCCACTAGTTGCATTTGT+TGG + chr2_1:16840327-16840346 Msa0198250:CDS 35.0%
!! TTTGTTGGTGTTAATCACCA+TGG + chr2_1:16840342-16840361 Msa0198250:CDS 35.0%
! TTGTAACAATAGTTTCTGGG+GGG - chr2_1:16840464-16840483 None:intergenic 35.0%
CGGTTTGTAACAATAGTTTC+TGG - chr2_1:16840468-16840487 None:intergenic 35.0%
! CACATTCTATGGTCTTACAT+CGG - chr2_1:16840488-16840507 None:intergenic 35.0%
CTCTACTATTGCACATTCTA+TGG - chr2_1:16840499-16840518 None:intergenic 35.0%
CATAGAATGTGCAATAGTAG+AGG + chr2_1:16840497-16840516 Msa0198250:CDS 35.0%
TATTGCATAATGTTGGGTCA+GGG - chr2_1:16840682-16840701 None:intergenic 35.0%
TTATTGCATAATGTTGGGTC+AGG - chr2_1:16840683-16840702 None:intergenic 35.0%
TGCACATGACCCTTAAAAAA+GGG - chr2_1:16840822-16840841 None:intergenic 35.0%
ATGCACATGACCCTTAAAAA+AGG - chr2_1:16840823-16840842 None:intergenic 35.0%
! AACTGAAGCTCTTGATGATT+TGG + chr2_1:16840905-16840924 Msa0198250:CDS 35.0%
CATGGTAAAAGAACATCAAG+GGG + chr2_1:16841094-16841113 Msa0198250:CDS 35.0%
AAGAACCGGTAAGAAATGAT+AGG + chr2_1:16841117-16841136 Msa0198250:CDS 35.0%
TCCTTAATTACAATGGTGTG+GGG + chr2_1:16841237-16841256 Msa0198250:CDS 35.0%
CATGGGTGAACAAAAATGAA+TGG - chr2_1:16841545-16841564 None:intergenic 35.0%
GATCAATGCATAAACCATAG+TGG + chr2_1:16841678-16841697 Msa0198250:intron 35.0%
AATGCATAAACCATAGTGGT+TGG + chr2_1:16841682-16841701 Msa0198250:intron 35.0%
CAAAGAGGGATCAACAAATA+TGG + chr2_1:16841908-16841927 Msa0198250:three_prime_UTR 35.0%
! AAATATGGGTCATGGCTTTA+GGG + chr2_1:16841923-16841942 Msa0198250:three_prime_UTR 35.0%
CAACACCATAGTAGTAATCA+TGG - chr2_1:16842046-16842065 None:intergenic 35.0%
!! TGCACGAAAGCACTTATTAA+TGG - chr2_1:16842074-16842093 None:intergenic 35.0%
ACTTCAGCACTTTGAACTTA+AGG + chr2_1:16842133-16842152 Msa0198250:three_prime_UTR 35.0%
CTTCAGCACTTTGAACTTAA+GGG + chr2_1:16842134-16842153 Msa0198250:three_prime_UTR 35.0%
CATTTGGGTCTATTCAATCA+GGG - chr2_1:16842170-16842189 None:intergenic 35.0%
CTGATTGAATAGACCCAAAT+GGG + chr2_1:16842169-16842188 Msa0198250:three_prime_UTR 35.0%
TAAGCAACTACTTGAGGTTG+AGG + chr2_1:16839468-16839487 Msa0198250:CDS 40.0%
TGGCGAACATGAAAATGGAA+GGG + chr2_1:16839543-16839562 Msa0198250:CDS 40.0%
AATAGCTATGCCAGGGAAAT+TGG + chr2_1:16839679-16839698 Msa0198250:CDS 40.0%
GTCTTGTGTTGTAGTTGTGA+AGG + chr2_1:16839763-16839782 Msa0198250:CDS 40.0%
CGTAGGAAAGAAACAAGAAC+AGG + chr2_1:16839814-16839833 Msa0198250:CDS 40.0%
! GAGTAGTGGAATCTAATAGG+TGG + chr2_1:16839860-16839879 Msa0198250:CDS 40.0%
TAGTGGAATCTAATAGGTGG+AGG + chr2_1:16839863-16839882 Msa0198250:CDS 40.0%
AGTGGAATCTAATAGGTGGA+GGG + chr2_1:16839864-16839883 Msa0198250:CDS 40.0%
! TTAGAGTTTTGCGCTCTTTC+AGG - chr2_1:16839928-16839947 None:intergenic 40.0%
CTCTAAATCACATAGGAGGA+TGG + chr2_1:16839942-16839961 Msa0198250:CDS 40.0%
! CGTACTTCAACATCTAGAGT+CGG - chr2_1:16839994-16840013 None:intergenic 40.0%
CGACTCTAGATGTTGAAGTA+CGG + chr2_1:16839992-16840011 Msa0198250:CDS 40.0%
AGAATTTGAGCTCCCATAAC+CGG - chr2_1:16840055-16840074 None:intergenic 40.0%
GGGAGCTCAAATTCTAATGA+AGG + chr2_1:16840060-16840079 Msa0198250:CDS 40.0%
! GCAACAACGTTAAGTTTTCC+AGG + chr2_1:16840091-16840110 Msa0198250:CDS 40.0%
TTACTTCTGCCACCATAAAC+TGG + chr2_1:16840155-16840174 Msa0198250:CDS 40.0%
!! GTGATGGATCTGAATGATGA+TGG + chr2_1:16840198-16840217 Msa0198250:CDS 40.0%
ACACCAACAAATGCAACTAG+TGG - chr2_1:16840333-16840352 None:intergenic 40.0%
CTAGCAAAACAGATTGACCA+TGG - chr2_1:16840362-16840381 None:intergenic 40.0%
! CATGGTCAATCTGTTTTGCT+AGG + chr2_1:16840360-16840379 Msa0198250:CDS 40.0%
! CAATCTGTTTTGCTAGGATG+TGG + chr2_1:16840366-16840385 Msa0198250:CDS 40.0%
! AATAGTAGAGGTTTTCCCGA+GGG + chr2_1:16840509-16840528 Msa0198250:CDS 40.0%
AATGTGTCCTTGGAGTAAAC+TGG - chr2_1:16840756-16840775 None:intergenic 40.0%
!!! TCCAAGGACACATTTTTTGC+TGG + chr2_1:16840762-16840781 Msa0198250:CDS 40.0%
TCCAGCAAAAAATGTGTCCT+TGG - chr2_1:16840766-16840785 None:intergenic 40.0%
TAGAGAGTTGCAACTCATAG+TGG - chr2_1:16840968-16840987 None:intergenic 40.0%
CAATAAGTTCCAAGATGAGG+TGG + chr2_1:16841010-16841029 Msa0198250:CDS 40.0%
AATTTGTGAGACGCTGAAAC+AGG - chr2_1:16841048-16841067 None:intergenic 40.0%
CGAGTCTATAGTGACATACA+TGG + chr2_1:16841076-16841095 Msa0198250:CDS 40.0%
CCTTAATTACAATGGTGTGG+GGG + chr2_1:16841238-16841257 Msa0198250:CDS 40.0%
ATCAAAACACTGAACTGGGT+TGG - chr2_1:16841354-16841373 None:intergenic 40.0%
GGTATGCAAGTAGTTGAAGA+AGG + chr2_1:16841389-16841408 Msa0198250:CDS 40.0%
ATATTTCGAGCAGGGTTTGA+TGG - chr2_1:16841732-16841751 None:intergenic 40.0%
CCAAACACATATTTCGAGCA+GGG - chr2_1:16841740-16841759 None:intergenic 40.0%
ACCAAACACATATTTCGAGC+AGG - chr2_1:16841741-16841760 None:intergenic 40.0%
TGCTCGAAATATGTGTTTGG+TGG + chr2_1:16841740-16841759 Msa0198250:CDS 40.0%
GCTCGAAATATGTGTTTGGT+GGG + chr2_1:16841741-16841760 Msa0198250:CDS 40.0%
GGATCAACAAATATGGGTCA+TGG + chr2_1:16841915-16841934 Msa0198250:three_prime_UTR 40.0%
CAAATATGGGTCATGGCTTT+AGG + chr2_1:16841922-16841941 Msa0198250:three_prime_UTR 40.0%
CCATTTGGGTCTATTCAATC+AGG - chr2_1:16842171-16842190 None:intergenic 40.0%
CCTGATTGAATAGACCCAAA+TGG + chr2_1:16842168-16842187 Msa0198250:three_prime_UTR 40.0%
ACTACTTGAGGTTGAGGACA+AGG + chr2_1:16839474-16839493 Msa0198250:CDS 45.0%
CTACTTGAGGTTGAGGACAA+GGG + chr2_1:16839475-16839494 Msa0198250:CDS 45.0%
! GATGGTGGCGAACATGAAAA+TGG + chr2_1:16839538-16839557 Msa0198250:CDS 45.0%
GTGGCGAACATGAAAATGGA+AGG + chr2_1:16839542-16839561 Msa0198250:CDS 45.0%
CGAACATGAAAATGGAAGGG+AGG + chr2_1:16839546-16839565 Msa0198250:CDS 45.0%
AAATGGAAGGGAGGAAACCA+CGG + chr2_1:16839555-16839574 Msa0198250:CDS 45.0%
CGTAACAGTAAAGAGAAGCG+TGG + chr2_1:16839736-16839755 Msa0198250:CDS 45.0%
!! AGTCGGCTCAACCTTTCTTT+TGG - chr2_1:16839977-16839996 None:intergenic 45.0%
ATGCCAACTGTAGATGCTTC+CGG + chr2_1:16840033-16840052 Msa0198250:CDS 45.0%
!! TAACCGGAAGCATCTACAGT+TGG - chr2_1:16840039-16840058 None:intergenic 45.0%
ACTGTAGATGCTTCCGGTTA+TGG + chr2_1:16840039-16840058 Msa0198250:CDS 45.0%
CTGTAGATGCTTCCGGTTAT+GGG + chr2_1:16840040-16840059 Msa0198250:CDS 45.0%
TAGGACTCACCAGTTTATGG+TGG - chr2_1:16840167-16840186 None:intergenic 45.0%
! CAATAGTAGAGGTTTTCCCG+AGG + chr2_1:16840508-16840527 Msa0198250:CDS 45.0%
AAATTCTATGGTGAGCCCTC+GGG - chr2_1:16840527-16840546 None:intergenic 45.0%
CAAATTCTATGGTGAGCCCT+CGG - chr2_1:16840528-16840547 None:intergenic 45.0%
! GGAAGATGAGGCATTTCAGA+TGG + chr2_1:16840596-16840615 Msa0198250:CDS 45.0%
!!! TGGCATCTTGTTTTCAGCTG+TGG - chr2_1:16840948-16840967 None:intergenic 45.0%
ACATCATCACCACCTCATCT+TGG - chr2_1:16841022-16841041 None:intergenic 45.0%
AGAACATCAAGGGGAAGAAC+CGG + chr2_1:16841103-16841122 Msa0198250:CDS 45.0%
ACTTCAAAGGCTACCTATGC+AGG + chr2_1:16841201-16841220 Msa0198250:CDS 45.0%
TATACAAGGCATGCCTGCAT+AGG - chr2_1:16841217-16841236 None:intergenic 45.0%
CCCCCACACCATTGTAATTA+AGG - chr2_1:16841241-16841260 None:intergenic 45.0%
ACATTGTCAGAGCTGAGATG+TGG - chr2_1:16841323-16841342 None:intergenic 45.0%
GGTTCGTTGTGTAACAGACA+AGG + chr2_1:16841472-16841491 Msa0198250:intron 45.0%
CCCTGCTCGAAATATGTGTT+TGG + chr2_1:16841737-16841756 Msa0198250:CDS 45.0%
! CGGACAAAAGCACATTCTCA+CGG - chr2_1:16841976-16841995 None:intergenic 45.0%
! TGTCCGACTGATTCTTAGCT+CGG + chr2_1:16841990-16842009 Msa0198250:three_prime_UTR 45.0%
CTTCCGAGCTAAGAATCAGT+CGG - chr2_1:16841996-16842015 None:intergenic 45.0%
CTGATTCTTAGCTCGGAAGA+AGG + chr2_1:16841997-16842016 Msa0198250:three_prime_UTR 45.0%
AATGGAAGGGAGGAAACCAC+GGG + chr2_1:16839556-16839575 Msa0198250:CDS 50.0%
ACTATGACTGTCAACTCCCG+TGG - chr2_1:16839575-16839594 None:intergenic 50.0%
TCAAACTCCACTCCCTCAAC+AGG - chr2_1:16839631-16839650 None:intergenic 50.0%
GGAATCTAATAGGTGGAGGG+TGG + chr2_1:16839867-16839886 Msa0198250:CDS 50.0%
TCACATAGGAGGATGGACAG+TGG + chr2_1:16839949-16839968 Msa0198250:CDS 50.0%
CACATAGGAGGATGGACAGT+GGG + chr2_1:16839950-16839969 Msa0198250:CDS 50.0%
ACATAGGAGGATGGACAGTG+GGG + chr2_1:16839951-16839970 Msa0198250:CDS 50.0%
CAAGTCTTGCAGATCATCCG+TGG + chr2_1:16840555-16840574 Msa0198250:CDS 50.0%
GAAACTGCACCAGACAACCA+CGG - chr2_1:16840575-16840594 None:intergenic 50.0%
TGGTTGTCTGGTGCAGTTTC+AGG + chr2_1:16840575-16840594 Msa0198250:CDS 50.0%
GGTGCAGTTTCAGGAAGATG+AGG + chr2_1:16840584-16840603 Msa0198250:CDS 50.0%
TTGGGCTCCAGTTTACTCCA+AGG + chr2_1:16840746-16840765 Msa0198250:CDS 50.0%
!! ACCATAGTGGTTGGTGATGC+AGG + chr2_1:16841691-16841710 Msa0198250:intron 50.0%
ACCTGCATCACCAACCACTA+TGG - chr2_1:16841695-16841714 None:intergenic 50.0%
GATGCAGGTTGCAGCTGTTA+AGG + chr2_1:16841706-16841725 Msa0198250:intron 50.0%
AGACTACGCCCAACCTGTTG+AGG + chr2_1:16839615-16839634 Msa0198250:CDS 55.0%
GACTACGCCCAACCTGTTGA+GGG + chr2_1:16839616-16839635 Msa0198250:CDS 55.0%
CTCCACTCCCTCAACAGGTT+GGG - chr2_1:16839626-16839645 None:intergenic 55.0%
ACTCCACTCCCTCAACAGGT+TGG - chr2_1:16839627-16839646 None:intergenic 55.0%
GGACAGTGGGGCCAAAAGAA+AGG + chr2_1:16839963-16839982 Msa0198250:CDS 55.0%
GCAGATCATCCGTGGTTGTC+TGG + chr2_1:16840563-16840582 Msa0198250:CDS 55.0%
AAAGCTCCGAAGCTTGCACG+AGG + chr2_1:16840713-16840732 Msa0198250:CDS 55.0%
CTCTGTCCTCGTGCAAGCTT+CGG - chr2_1:16840722-16840741 None:intergenic 55.0%
TGCACGAGGACAGAGAGCTT+TGG + chr2_1:16840727-16840746 Msa0198250:CDS 55.0%
GCACGAGGACAGAGAGCTTT+GGG + chr2_1:16840728-16840747 Msa0198250:CDS 55.0%
CGCCCAACCTGTTGAGGGAG+TGG + chr2_1:16839621-16839640 Msa0198250:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16839445 16842197 16839445 ID=Msa0198250;Name=Msa0198250
chr2_1 mRNA 16839445 16842197 16839445 ID=Msa0198250-mRNA-1;Parent=Msa0198250;Name=Msa0198250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|1|1|2|401|703
chr2_1 exon 16839445 16841472 16839445 ID=Msa0198250-mRNA-1:exon:6956;Parent=Msa0198250-mRNA-1
chr2_1 exon 16841713 16842197 16841713 ID=Msa0198250-mRNA-1:exon:6957;Parent=Msa0198250-mRNA-1
chr2_1 CDS 16839445 16841472 16839445 ID=Msa0198250-mRNA-1:cds;Parent=Msa0198250-mRNA-1
chr2_1 CDS 16841713 16841796 16841713 ID=Msa0198250-mRNA-1:cds;Parent=Msa0198250-mRNA-1
chr2_1 three_prime_UTR 16841797 16842197 16841797 ID=Msa0198250-mRNA-1:three_prime_utr;Parent=Msa0198250-mRNA-1
Gene Sequence

>Msa0198250

ATAGATGAGGGGTCTCTACAAAGTAAGCAACTACTTGAGGTTGAGGACAAGGGCAACGAGCTTGAGAATGACTGTAGTCAATTGTTTGAGATTGATGGTGGCGAACATGAAAATGGAAGGGAGGAAACCACGGGAGTTGACAGTCATAGTGAAGAATCTCAAAGAACAAAAGACTACGCCCAACCTGTTGAGGGAGTGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAATAGCTATGCCAGGGAAATTGGATTTGCTATTCGTGTTAAATCTTCGTGGACCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGTTGTAGTTGTGAAGGTTTCAAAACAAATAAAGAAGCTAATAGTCGTAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGACTGAGAGTAGTGGAATCTAATAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCGCAAAACTCTAAATCACATAGGAGGATGGACAGTGGGGCCAAAAGAAAGGTTGAGCCGACTCTAGATGTTGAAGTACGGACAATCAAGTTATATCGAATGCCAACTGTAGATGCTTCCGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAACTAGCAACAACGTTAAGTTTTCCAGGAGACTGAAGCTAAAAAAAGGTGATGCAGAACTTATTTCAAATTACTTCTGCCACCATAAACTGGTGAGTCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAATTGAGGAACATATTTTGGATTGATTCTAGTTCTAGGGCTGCATATAGTTATTTTGGTGACGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTAGTTGCATTTGTTGGTGTTAATCACCATGGTCAATCTGTTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACGTATACTTGGTTATTTAGAGCATGGCTTTCTTGTATGTCTAGTCGCCCCCCAGAAACTATTGTTACAAACCGATGTAAGACCATAGAATGTGCAATAGTAGAGGTTTTCCCGAGGGCTCACCATAGAATTTGTCTATTGCAAGTCTTGCAGATCATCCGTGGTTGTCTGGTGCAGTTTCAGGAAGATGAGGCATTTCAGATGGCACTGACAAGAGTGATATATGACCCTAAAACATTAGATGAATTTGAAAGAGATTGGGATTCCCTGACCCAACATTATGCAATAAGAAATCATGCAAAGCTCCGAAGCTTGCACGAGGACAGAGAGCTTTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCTGGAATTTCTAATTACGAAAAGGGTGAATCTATGATTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAACAAAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAGTCCACAGCTGAAAACAAGATGCCACTATGAGTTGCAACTCTCTAAATTGTACACGAATGCAATATTCAATAAGTTCCAAGATGAGGTGGTGATGATGTCTTCCTGTTTCAGCGTCTCACAAATTCAAACAAACGAGTCTATAGTGACATACATGGTAAAAGAACATCAAGGGGAAGAACCGGTAAGAAATGATAGGCATTTTGAAGTCATGTATGATAAAGCATTAACCGAAGTACGTTGCATTTGTAATTGCTTTAACTTCAAAGGCTACCTATGCAGGCATGCCTTGTATATCCTTAATTACAATGGTGTGGGGGAAATTCCATGTCATTATATTTTGTCAAGATGGAGGAAAGATTTTAAGCGATTGTATGTACCACATCTCAGCTCTGACAATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGGTATGCAAGTAGTTGAAGAAGGCACGATATCCCAAAATCATTATTTGGTTTCTTGGCAGACATTTATAGAGTCTTTGAATAAGGTTGCAGCTGTTAAGGCCATCAAACCCTGCTCGAAATATGTGTTTGGTGGGCCTACATACATGAATTATGATAAAGAGAAATAG
Protein sequence

>Msa0198250

IDEGSLQSKQLLEVEDKGNELENDCSQLFEIDGGEHENGREETTGVDSHSEESQRTKDYAQPVEGVEFETYDDAYNYYNSYAREIGFAIRVKSSWTKRNSKEKRGAVLCCSCEGFKTNKEANSRRKETRTGCLAMIRLRVVESNRWRVDEVKLEHNHSFDPERAQNSKSHRRMDSGAKRKVEPTLDVEVRTIKLYRMPTVDASGYGSSNSNEGGTSNNVKFSRRLKLKKGDAELISNYFCHHKLVSPNFFYVMDLNDDGQLRNIFWIDSSSRAAYSYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGLLADETFETYTWLFRAWLSCMSSRPPETIVTNRCKTIECAIVEVFPRAHHRICLLQVLQIIRGCLVQFQEDEAFQMALTRVIYDPKTLDEFERDWDSLTQHYAIRNHAKLRSLHEDRELWAPVYSKDTFFAGISNYEKGESMIPFFKGHVHQQTSLKEFFEIYELVQQKKQKTEALDDLESQNSSPQLKTRCHYELQLSKLYTNAIFNKFQDEVVMMSSCFSVSQIQTNESIVTYMVKEHQGEEPVRNDRHFEVMYDKALTEVRCICNCFNFKGYLCRHALYILNYNGVGEIPCHYILSRWRKDFKRLYVPHLSSDNVDITNPVQCFDHLYKRGMQVVEEGTISQNHYLVSWQTFIESLNKVAAVKAIKPCSKYVFGGPTYMNYDKEK*