AlfalfaGEDB | Msa0317920

M. sativa cultivar zhongmu-4 / Msa0317920

KEGG: K17604
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317920	XP_024631611.1	42.147	382	139	8	38	338	1	381	8.41e-78	280
Msa0317920	XP_024631611.1	89.140	709	55	1	344	1052	1	687	0.0	1318

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317920	sp\|Q9S793\|FRS8_ARATH	53.435	655	288	7	408	1050	74	723	0.0	697
Msa0317920	sp\|Q9S793\|FRS8_ARATH	37.313	335	135	6	76	339	88	418	5.17e-62	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0317920	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0317920	0.818499	1.899085e-52	-8.615850e-47
Msa0072370	Msa0317920	0.810894	9.184323e-51	-8.615850e-47
Msa0089380	Msa0317920	0.806080	9.786183e-50	-8.615850e-47
Msa0110970	Msa0317920	0.830645	2.613842e-55	-8.615850e-47
Msa0140780	Msa0317920	0.800395	1.470497e-48	-8.615850e-47
Msa0157290	Msa0317920	0.818012	2.447323e-52	-8.615850e-47
Msa0184960	Msa0317920	0.800013	1.758443e-48	-8.615850e-47
Msa0198250	Msa0317920	0.923712	1.848281e-89	-8.615850e-47
Msa0243100	Msa0317920	0.815001	1.156279e-51	-8.615850e-47
Msa0278530	Msa0317920	0.930920	8.093090e-94	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317920	MtrunA17_Chr2g0291591	89.402	585	40	1	344	928	1	563	0.0	1085
Msa0317920	MtrunA17_Chr2g0291591	42.147	382	139	8	38	338	1	381	1.98e-83	281
Msa0317920	MtrunA17_Chr2g0291581	50.155	644	306	5	413	1052	55	687	0.0	644
Msa0317920	MtrunA17_Chr2g0291581	64.932	365	30	6	60	342	33	381	5.93e-141	439
Msa0317920	MtrunA17_Chr2g0296781	35.262	553	350	5	444	992	12	560	7.62e-112	363
Msa0317920	MtrunA17_Chr2g0296781	47.945	146	70	1	196	335	165	310	7.89e-39	155
Msa0317920	MtrunA17_Chr1g0207551	33.874	617	396	6	428	1041	33	640	2.70e-111	364
Msa0317920	MtrunA17_Chr1g0207551	41.772	158	85	2	190	341	199	355	8.07e-32	134
Msa0317920	MtrunA17_Chr3g0080351	32.488	631	376	8	428	1040	75	673	1.35e-108	358
Msa0317920	MtrunA17_Chr3g0080351	29.870	385	188	12	22	344	28	392	1.34e-31	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317920	AT1G80010.1	53.435	655	288	7	408	1050	74	723	0.0	697
Msa0317920	AT1G80010.1	37.313	335	135	6	76	339	88	418	5.25e-63	228
Msa0317920	AT1G52520.1	50.000	680	299	13	392	1050	42	701	0.0	641
Msa0317920	AT1G52520.1	42.377	387	151	9	21	342	18	397	3.35e-80	277
Msa0317920	AT4G15090.1	33.226	620	399	6	428	1041	50	660	1.52e-115	376
Msa0317920	AT4G15090.1	36.898	187	107	4	157	335	186	369	6.08e-32	135
Msa0317920	AT4G15090.5	33.226	620	399	6	428	1041	50	660	1.52e-115	376
Msa0317920	AT4G15090.5	36.898	187	107	4	157	335	186	369	6.08e-32	135
Msa0317920	AT4G15090.3	33.226	620	399	6	428	1041	50	660	1.52e-115	376
Msa0317920	AT4G15090.3	36.898	187	107	4	157	335	186	369	6.08e-32	135

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Find 240 sgRNAs with CRISPR-Local

Find 713 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTAAATCACATAGG+AGG	0.599156	2_4:-16090047	Msa0317920:CDS
AAAATCATTATTTGGTTTCT+TGG	0.223441	2_4:-16088562	Msa0317920:CDS
AAAGAGGGATCAACAAATAT+GGG	0.478243	2_4:-16088076	Msa0317920:three_prime_UTR
AAAGCTCCGAAGCTTGCACG+AGG	0.688357	2_4:-16089272	Msa0317920:CDS
AAATAATAGAATCATATAAA+TGG	0.289585	2_4:-16096040	Msa0317920:CDS
AAATATGGGTCATGGCTTTA+GGG	0.385928	2_4:-16088062	Msa0317920:three_prime_UTR
AAATGATCAAAACACTGAAC+TGG	0.347410	2_4:+16088629	None:intergenic
AAATGCCTATCATTTCTTAC+CGG	0.393224	2_4:+16088863	None:intergenic
AAATGGAAGGGAGGAAACCA+CGG	0.638573	2_4:-16090430	Msa0317920:CDS
AAATTCTATGGTGAGCCCTC+GGG	0.542802	2_4:+16089461	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATGAAGAGCGATATTTAA+CGG	-	chr2_4:16087926-16087945	Msa0317920:three_prime_UTR	30.0%
CTTCAAATTATGCTAGGTTT+AGG	-	chr2_4:16088100-16088119	Msa0317920:three_prime_UTR	30.0%
AATACATAATTAACCCAGCA+CGG	-	chr2_4:16088187-16088206	Msa0317920:three_prime_UTR	30.0%
AGTAACCGAAAATTTGGTAA+GGG	-	chr2_4:16088470-16088489	Msa0317920:three_prime_UTR	30.0%
TCCACTGTAGTAATTAATCA+TGG	-	chr2_4:16088499-16088518	Msa0317920:exon	30.0%
ACCATGATTAATTACTACAG+TGG	+	chr2_4:16088503-16088522	None:intergenic	30.0%
TTTATAGGGGCAAAAATCTT+TGG	-	chr2_4:16088722-16088741	Msa0317920:CDS	30.0%
AACTACAAAATAACCAAGCA+AGG	-	chr2_4:16088870-16088889	Msa0317920:CDS	30.0%
TAGTCATAACGAAAGAATCT+GGG	+	chr2_4:16089288-16089307	None:intergenic	30.0%
ATAGTCATAACGAAAGAATC+TGG	+	chr2_4:16089289-16089308	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	16087810	16099420	16087810	ID=Msa0317920;Name=Msa0317920
chr2_4	mRNA	16087810	16099420	16087810	ID=Msa0317920-mRNA-1;Parent=Msa0317920;Name=Msa0317920-mRNA-1;_AED=0.13;_eAED=0.13;_QI=51\|0.44\|0.5\|1\|0.22\|0.4\|10\|521\|1052
chr2_4	exon	16087810	16088294	16087810	ID=Msa0317920-mRNA-1:exon:6057;Parent=Msa0317920-mRNA-1
chr2_4	exon	16088469	16090562	16088469	ID=Msa0317920-mRNA-1:exon:6056;Parent=Msa0317920-mRNA-1
chr2_4	exon	16091949	16092044	16091949	ID=Msa0317920-mRNA-1:exon:6055;Parent=Msa0317920-mRNA-1
chr2_4	exon	16095896	16096065	16095896	ID=Msa0317920-mRNA-1:exon:6054;Parent=Msa0317920-mRNA-1
chr2_4	exon	16096084	16096332	16096084	ID=Msa0317920-mRNA-1:exon:6053;Parent=Msa0317920-mRNA-1
chr2_4	exon	16096411	16096533	16096411	ID=Msa0317920-mRNA-1:exon:6052;Parent=Msa0317920-mRNA-1
chr2_4	exon	16096621	16096759	16096621	ID=Msa0317920-mRNA-1:exon:6051;Parent=Msa0317920-mRNA-1
chr2_4	exon	16096823	16096963	16096823	ID=Msa0317920-mRNA-1:exon:6050;Parent=Msa0317920-mRNA-1
chr2_4	exon	16098143	16098238	16098143	ID=Msa0317920-mRNA-1:exon:6049;Parent=Msa0317920-mRNA-1
chr2_4	exon	16099283	16099420	16099283	ID=Msa0317920-mRNA-1:exon:6048;Parent=Msa0317920-mRNA-1
chr2_4	five_prime_UTR	16099370	16099420	16099370	ID=Msa0317920-mRNA-1:five_prime_utr;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16099283	16099369	16099283	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16098143	16098238	16098143	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16096823	16096963	16096823	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16096621	16096759	16096621	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16096411	16096533	16096411	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16096084	16096332	16096084	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16095896	16096065	16095896	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16091949	16092044	16091949	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	CDS	16088505	16090562	16088505	ID=Msa0317920-mRNA-1:cds;Parent=Msa0317920-mRNA-1
chr2_4	three_prime_UTR	16088469	16088504	16088469	ID=Msa0317920-mRNA-1:three_prime_utr;Parent=Msa0317920-mRNA-1
chr2_4	three_prime_UTR	16087810	16088294	16087810	ID=Msa0317920-mRNA-1:three_prime_utr;Parent=Msa0317920-mRNA-1

Gene Sequence

>Msa0317920

ATGTCGAATCTTGGGACTGAACAACAACTTGTCTCCGCCGTTGAGCCTCTCCCTTCAGAAGAAGAAGATGAAGAGCGATATTTAACGAGTTCATGTGAACCCTCTGATCGGATCATGACGGGTGATACTGTGTGTGCTCCAAATTATAAAGACTTGTCACTGAGCTCTAATCTCGATGTCACGATGGAAGATACTTCACCATGCAGCAAGCAATCGCCGGATGGAGAATGCATTGAAATTCCAAGAGATGAAGATGGTGCTCTAATTGAATTTGATTGTCAAGACGATATTTCTGAGGGTAAAAAGGAATTTGTTGCACCTGCCGTTGGATTTTGTGTGAGGATTAAGAATTCATGGTTCAAGCGAAATAGCAAAGAAAAATACGGTGCAGTGCTTTGTTGTAGCAGTCAAGGTTTCAAAAGAATAAAAGATGTTAACAATTTGAGAAAAGAAACCAGAACTGGTGCTAAGATACATAAATCCATTAAAAAGATGGGAAGTGGAACTAAAAATAACTCGTTGCCTAGTTCTGATGCAGAGGGGAAAACAATTAAGGTATATCATGCACTTGTGATAGATACAGAAGGTGACACACAAGCCATTTATAATTTCCTCTGCCGTATGCAATTGACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGGCATTTAAGGAATGCATTATGGGTTGATGCTAAATCTAGGGCTGCATGCGGTTATTTTAGTGATGTCATTTATCTTGACAACACTTATTTGGTAAACAAATATGAAATCCCTCTTGTGGCTTTAGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGTGAAATAATAGAATCATATAAATGGTTGTTTAGAACATGGAACACATGTATATCAGGTTGTTCTCCTCAAACTATTATTACAGATAGATGCAAAGCTTTGCAGAGTGTAATTGCTGAAGTTTTTCCCAGATCTCATCATTGCTTTAGCTTGTCATTAATTATGAAAAAAAACTCATGTGAACTCTCTGGCCGAATCATGACCGACAATGCAGCGTGTTCTCCAAAGGATAAAGGCTTGTTGCTGAGCCCTAATCTCGACATCACGATAGATGAGGGGTCTCTACAAAGTAAGCAACTACTTGAGGTTGAGGACAAGGGCAACGAGCTTGAGAATGACTGTAGTCAATTGTTTGAGATCGATGGTGGCGAACATGAAAATGGAAGGGAGGAAACCACGGGAGTTGACAGTCATAGTGAAGAATCTCAAAGAACAAAAGACTACGCCCAACCTGTTGAGGGAGTGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAATAGCTATGCCAGGGAAATTGGATTTGCTATTCGGGTTAAATCTTCGTGGACCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGTTGTAGTTGTGAAGGTTTCAAAACAAATAAAGAAGCTAATAGTCGTAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGACTGAGAGTAGTGGAATCTAATAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCGCAAAACTCTAAATCACATAGGAGGATGGACAGTGGGGCCAAAAGAAAGGTTGAGCCGACTCTAGATGTTGAAGTACGGACAATCAAGTTATATCGAATGCCAACTGTAGATGCTTCTGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAACTAGCAACAACGTTAAGTTTTCCAGGAGACTGAAGCTAAAAAAAGGTGATGCAGAACTTATTTCAAATTACTTCTGCCACCATAAACTGGTGAGTCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAATTGAGGAACATATTTTGGATTGATTCTAGTTCTAGGGCTGCATATAGTTATTTTGGTGACGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTAGTTGCATTTGTTGGTGTTAATCACCATGGTCAATCTGTTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACGTATACTTGGTTATTTAGAGCATGGCTTTCTTGTATGTCTAGTCGCCCCCCAGAAACTATTGTTACAAACCGATGTAAGACCATAGAATGTGCAATAGTAGAGGTTTTCCCGAGGGCTCACCATAGAATTTGTCTATTGCAAGTCTTGCAGATCATCCGTGGTTGTCTGGTGCAGTTTCAGGAAGATGAGGCATTTCAGATGGCACTGACAAGAGTGATATATGACCCTAAAACATTAGATGAATTTGAAAGAGATTGGGATTCCCTGACCCAACATTATGCAATAAGAAATCATGCAAAGCTCCGAAGCTTGCACGAGGACAGAGAGCTTTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCTGGAATTTCTAATTACGAAAAGGGTGAATCTATGATTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAACAAAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAGTCCACAGCTGAAAACAAGATGCCACTATGAGTTGCAACTCTCTAAATTGTACACGAATGCAATATTCAATAAGTTCCAAGATGAGGTGGTGATGATGTCTTCCTGTTTCAGCGTCTCACAAATTCAAACAAACGAGTCTATAGTGACATACATGGTAAAAGAACATCAAGGGGAAGAACCGGTAAGAAATGATAGGCATTTTGAAGTCATGTATGATAAAGCATTAACCGAAGTACGTTGCATTTGTAATTGCTTTAACTTCAAAGGCTACCTATGCGGGCATGCCTTGTATATCCTTAATTACAATGGTGTGGGGGAAATTCCATGTCATTATATTTTGTCAAGATGGAGGAAAGATTTTAAGCGATTGTATGTACCACATCTCAGCTCTGACAATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGGTATGCAAGTAGTTGAAGAAGGCACGATATCCCAAAATCATTATTTGGTTTCTTGGCAGACATTTATAGAGTCTTTGAATAAGGTTCGTTGTGTAACAGACAAGGTTGAATAA

Protein sequence

>Msa0317920

MSNLGTEQQLVSAVEPLPSEEEDEERYLTSSCEPSDRIMTGDTVCAPNYKDLSLSSNLDVTMEDTSPCSKQSPDGECIEIPRDEDGALIEFDCQDDISEGKKEFVAPAVGFCVRIKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVNNLRKETRTGAKIHKSIKKMGSGTKNNSLPSSDAEGKTIKVYHALVIDTEGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNALWVDAKSRAACGYFSDVIYLDNTYLVNKYEIPLVALVGINHHGQSVLLGEIIESYKWLFRTWNTCISGCSPQTIITDRCKALQSVIAEVFPRSHHCFSLSLIMKKNSCELSGRIMTDNAACSPKDKGLLLSPNLDITIDEGSLQSKQLLEVEDKGNELENDCSQLFEIDGGEHENGREETTGVDSHSEESQRTKDYAQPVEGVEFETYDDAYNYYNSYAREIGFAIRVKSSWTKRNSKEKRGAVLCCSCEGFKTNKEANSRRKETRTGCLAMIRLRVVESNRWRVDEVKLEHNHSFDPERAQNSKSHRRMDSGAKRKVEPTLDVEVRTIKLYRMPTVDASGYGSSNSNEGGTSNNVKFSRRLKLKKGDAELISNYFCHHKLVSPNFFYVMDLNDDGQLRNIFWIDSSSRAAYSYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGLLADETFETYTWLFRAWLSCMSSRPPETIVTNRCKTIECAIVEVFPRAHHRICLLQVLQIIRGCLVQFQEDEAFQMALTRVIYDPKTLDEFERDWDSLTQHYAIRNHAKLRSLHEDRELWAPVYSKDTFFAGISNYEKGESMIPFFKGHVHQQTSLKEFFEIYELVQQKKQKTEALDDLESQNSSPQLKTRCHYELQLSKLYTNAIFNKFQDEVVMMSSCFSVSQIQTNESIVTYMVKEHQGEEPVRNDRHFEVMYDKALTEVRCICNCFNFKGYLCGHALYILNYNGVGEIPCHYILSRWRKDFKRLYVPHLSSDNVDITNPVQCFDHLYKRGMQVVEEGTISQNHYLVSWQTFIESLNKVRCVTDKVE*