Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198820 | XP_013463044.1 | 97.222 | 468 | 13 | 0 | 1 | 468 | 1 | 468 | 0.0 | 912 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198820 | sp|Q94C59|PATL4_ARATH | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 1.71e-175 | 506 |
| Msa0198820 | sp|Q94C59|PATL4_ARATH | 46.226 | 106 | 50 | 2 | 1 | 100 | 1 | 105 | 5.03e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198820 | A0A072V4Y7 | 97.222 | 468 | 13 | 0 | 1 | 468 | 1 | 468 | 0.0 | 912 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077560 | Msa0198820 | 0.822313 | 2.533215e-53 | -8.615850e-47 |
| Msa0094790 | Msa0198820 | 0.802971 | 4.355231e-49 | -8.615850e-47 |
| Msa0198820 | Msa0241610 | 0.835328 | 1.788449e-56 | -8.615850e-47 |
| Msa0198820 | Msa0754450 | 0.801094 | 1.058737e-48 | -8.615850e-47 |
| Msa0198820 | Msa1158200 | 0.811186 | 7.938559e-51 | -8.615850e-47 |
| Msa0198820 | Msa1190180 | 0.816820 | 4.540644e-52 | -8.615850e-47 |
| Msa0198820 | Msa1258000 | 0.802832 | 4.652499e-49 | -8.615850e-47 |
| Msa0198820 | Msa1401670 | 0.809684 | 1.675731e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198820 | MtrunA17_Chr2g0293201 | 97.222 | 468 | 13 | 0 | 1 | 468 | 1 | 468 | 0.0 | 912 |
| Msa0198820 | MtrunA17_Chr8g0385291 | 50.000 | 394 | 182 | 6 | 81 | 467 | 116 | 501 | 7.36e-133 | 393 |
| Msa0198820 | MtrunA17_Chr3g0131071 | 50.943 | 371 | 169 | 7 | 88 | 452 | 193 | 556 | 2.37e-128 | 384 |
| Msa0198820 | MtrunA17_Chr1g0183881 | 44.691 | 405 | 197 | 5 | 64 | 468 | 91 | 468 | 3.50e-126 | 375 |
| Msa0198820 | MtrunA17_Chr4g0014901 | 49.608 | 383 | 181 | 7 | 88 | 463 | 213 | 590 | 2.17e-125 | 377 |
| Msa0198820 | MtrunA17_Chr4g0014911 | 43.191 | 470 | 209 | 8 | 6 | 462 | 35 | 459 | 2.88e-119 | 357 |
| Msa0198820 | MtrunA17_Chr4g0004981 | 49.123 | 342 | 164 | 5 | 124 | 461 | 107 | 442 | 1.38e-117 | 352 |
| Msa0198820 | MtrunA17_Chr7g0243541 | 36.682 | 428 | 175 | 9 | 47 | 468 | 62 | 399 | 1.68e-85 | 268 |
| Msa0198820 | MtrunA17_Chr3g0131581 | 28.571 | 210 | 134 | 6 | 142 | 349 | 67 | 262 | 4.23e-19 | 87.0 |
| Msa0198820 | MtrunA17_Chr8g0385681 | 29.048 | 210 | 133 | 8 | 142 | 349 | 50 | 245 | 2.21e-16 | 79.0 |
| Msa0198820 | MtrunA17_Chr8g0385691 | 29.048 | 210 | 133 | 8 | 142 | 349 | 47 | 242 | 1.89e-15 | 76.3 |
| Msa0198820 | MtrunA17_Chr4g0035381 | 27.434 | 226 | 151 | 6 | 132 | 349 | 74 | 294 | 4.39e-13 | 70.9 |
| Msa0198820 | MtrunA17_Chr5g0404711 | 26.689 | 296 | 180 | 11 | 70 | 349 | 12 | 286 | 9.46e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198820 | AT1G30690.1 | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 1.74e-176 | 506 |
| Msa0198820 | AT1G30690.1 | 46.226 | 106 | 50 | 2 | 1 | 100 | 1 | 105 | 5.11e-13 | 71.6 |
| Msa0198820 | AT1G30690.2 | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 1.74e-176 | 506 |
| Msa0198820 | AT1G30690.2 | 46.226 | 106 | 50 | 2 | 1 | 100 | 1 | 105 | 5.11e-13 | 71.6 |
| Msa0198820 | AT1G72160.1 | 45.233 | 451 | 204 | 7 | 14 | 461 | 75 | 485 | 1.82e-125 | 374 |
| Msa0198820 | AT4G09160.1 | 42.956 | 433 | 196 | 7 | 34 | 462 | 276 | 661 | 9.01e-119 | 362 |
| Msa0198820 | AT4G09160.2 | 42.956 | 433 | 196 | 7 | 34 | 462 | 251 | 636 | 9.04e-119 | 362 |
| Msa0198820 | AT4G09160.3 | 42.956 | 433 | 196 | 7 | 34 | 462 | 251 | 636 | 9.64e-119 | 362 |
| Msa0198820 | AT3G51670.1 | 47.826 | 368 | 176 | 7 | 109 | 466 | 44 | 405 | 9.55e-116 | 346 |
| Msa0198820 | AT1G22530.2 | 43.570 | 381 | 194 | 9 | 87 | 464 | 286 | 648 | 3.47e-96 | 303 |
| Msa0198820 | AT1G22530.1 | 43.570 | 381 | 194 | 9 | 87 | 464 | 320 | 682 | 4.87e-96 | 304 |
| Msa0198820 | AT1G72150.1 | 42.857 | 343 | 180 | 8 | 126 | 464 | 243 | 573 | 2.70e-87 | 278 |
| Msa0198820 | AT1G01630.1 | 26.667 | 210 | 138 | 6 | 142 | 349 | 50 | 245 | 2.81e-14 | 73.2 |
| Msa0198820 | AT4G08690.2 | 27.820 | 266 | 158 | 10 | 108 | 362 | 14 | 256 | 1.14e-13 | 72.0 |
| Msa0198820 | AT4G08690.1 | 27.820 | 266 | 158 | 10 | 108 | 362 | 14 | 256 | 1.14e-13 | 72.0 |
| Msa0198820 | AT4G08690.3 | 27.820 | 266 | 158 | 10 | 108 | 362 | 14 | 256 | 1.14e-13 | 72.0 |
| Msa0198820 | AT2G21540.3 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 3.72e-11 | 65.9 |
| Msa0198820 | AT2G21540.5 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 3.72e-11 | 65.9 |
| Msa0198820 | AT2G21540.6 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 4.03e-11 | 65.5 |
| Msa0198820 | AT2G21540.2 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 4.03e-11 | 65.5 |
| Msa0198820 | AT2G21540.1 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 4.03e-11 | 65.5 |
| Msa0198820 | AT2G21540.4 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 4.03e-11 | 65.5 |
| Msa0198820 | AT4G36490.1 | 28.682 | 258 | 156 | 10 | 106 | 349 | 45 | 288 | 5.02e-11 | 65.5 |
| Msa0198820 | AT3G24840.1 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.91e-11 | 65.1 |
| Msa0198820 | AT3G24840.6 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.91e-11 | 65.1 |
| Msa0198820 | AT3G24840.4 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.91e-11 | 65.1 |
| Msa0198820 | AT3G24840.2 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.91e-11 | 65.1 |
| Msa0198820 | AT3G24840.7 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.97e-11 | 65.1 |
| Msa0198820 | AT3G24840.3 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.97e-11 | 65.1 |
| Msa0198820 | AT3G24840.5 | 27.451 | 255 | 158 | 10 | 109 | 349 | 72 | 313 | 5.97e-11 | 65.1 |
Find 113 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATAATTCAATTCTTTA+AGG | 0.059255 | 2_1:-17524593 | None:intergenic |
| CAACAACAACCTCAACTTTC+TGG | 0.131542 | 2_1:-17522278 | None:intergenic |
| GTGCTGGGACTTGGCTGTTT+TGG | 0.168500 | 2_1:+17524358 | Msa0198820:CDS |
| GAGATTTATCAAAAGACTTT+TGG | 0.206251 | 2_1:+17522888 | Msa0198820:CDS |
| TACACAATCATTGTTCAAAA+AGG | 0.217177 | 2_1:+17524431 | Msa0198820:CDS |
| AACCATGACTGCTGAAACTA+TGG | 0.219621 | 2_1:+17522242 | Msa0198820:exon |
| TGAGAAATGTTCATCTTATA+AGG | 0.250454 | 2_1:+17522374 | Msa0198820:CDS |
| TTTGTTCCATTGTGTGTATT+TGG | 0.253649 | 2_1:+17524624 | Msa0198820:three_prime_UTR |
| AATGAAGATTGATTCGGTTT+TGG | 0.295898 | 2_1:+17522761 | Msa0198820:CDS |
| AGCTCTTTCTTTGAAGGTCC+TGG | 0.306334 | 2_1:-17523038 | None:intergenic |
| GAGAATGATTCTGAGTTCTT+TGG | 0.307280 | 2_1:+17523668 | Msa0198820:CDS |
| TTGAAACCACCAAAGTTAAC+AGG | 0.338939 | 2_1:-17523641 | None:intergenic |
| TGTTGAAGAAGACACTTAAA+TGG | 0.342376 | 2_1:+17522730 | Msa0198820:CDS |
| CATTTCTCAACTGTCTTTGT+GGG | 0.348798 | 2_1:-17522360 | None:intergenic |
| ATTCTAAGCTCTTTCTTTGA+AGG | 0.358035 | 2_1:-17523044 | None:intergenic |
| AACAACAACCTCAACTTTCT+GGG | 0.358226 | 2_1:-17522277 | None:intergenic |
| GTTCACAAGAAGGACCTATT+AGG | 0.377937 | 2_1:+17524465 | Msa0198820:CDS |
| GTGAAAGGTGGAGTGAGTTG+TGG | 0.391479 | 2_1:-17522047 | None:intergenic |
| TGAAAGGTGGAGTGAGTTGT+GGG | 0.392439 | 2_1:-17522046 | None:intergenic |
| GAGATGGAGGTGTTCTGTTA+TGG | 0.398108 | 2_1:+17522938 | Msa0198820:CDS |
| TTCTTGAAAGTGTTCCTAAT+AGG | 0.405231 | 2_1:-17524479 | None:intergenic |
| AAACACTTTGTGCTGGGACT+TGG | 0.406964 | 2_1:+17524349 | Msa0198820:CDS |
| TGAAGGAAGAAGAAGAGAAA+AGG | 0.407319 | 2_1:+17522571 | Msa0198820:CDS |
| ACATTTCTCAACTGTCTTTG+TGG | 0.408771 | 2_1:-17522361 | None:intergenic |
| TTTGAGGGCAAGAGAGTTCA+AGG | 0.413112 | 2_1:+17522689 | Msa0198820:CDS |
| GAAGGAAGAAGAAGAGAAAA+GGG | 0.413453 | 2_1:+17522572 | Msa0198820:CDS |
| TTTGTTCTTTGAGTTAAGAA+TGG | 0.417407 | 2_1:-17523460 | None:intergenic |
| ACTCCTTCATTTCCTTTGCT+TGG | 0.417448 | 2_1:-17522645 | None:intergenic |
| GTTGAAGCTTTGAAAGAAGA+AGG | 0.427026 | 2_1:+17522525 | Msa0198820:CDS |
| TTAACAGGGATCTCCTCAAT+TGG | 0.430450 | 2_1:-17523626 | None:intergenic |
| AGAGAAAAGGGTTGAAGAGG+TGG | 0.435026 | 2_1:+17522584 | Msa0198820:CDS |
| GCAAACTGTTACAATGTTGC+AGG | 0.436211 | 2_1:+17523076 | Msa0198820:CDS |
| GGTTGAAGAGGTGGAAGAAA+AGG | 0.436625 | 2_1:+17522593 | Msa0198820:CDS |
| GAAGGAAATGAAGATTGATT+CGG | 0.437171 | 2_1:+17522755 | Msa0198820:CDS |
| AAGAACAAAGAGCAAATTTG+TGG | 0.438490 | 2_1:+17523474 | Msa0198820:CDS |
| AAAGGAAGAAGAGACCAAAA+AGG | 0.439180 | 2_1:+17522503 | Msa0198820:CDS |
| GAGATCCCTGTTAACTTTGG+TGG | 0.444480 | 2_1:+17523635 | Msa0198820:CDS |
| TCAGAACTCATTCTCAAGGC+TGG | 0.446261 | 2_1:+17523707 | Msa0198820:CDS |
| AACATCTATAGTGTGTTTGA+TGG | 0.447007 | 2_1:+17522861 | Msa0198820:CDS |
| GTTGAGGTTGTTGTTGAAGA+AGG | 0.448048 | 2_1:+17522285 | Msa0198820:CDS |
| GCAGGACAATTACCCTGAAT+TGG | 0.448528 | 2_1:+17523094 | Msa0198820:CDS |
| TCTCAAAGAGTTTGAGAAGA+AGG | 0.453923 | 2_1:+17522419 | Msa0198820:CDS |
| GGTGTTCTGTTATGGAGAAA+TGG | 0.464992 | 2_1:+17522946 | Msa0198820:CDS |
| GAGGAGATCCCTGTTAACTT+TGG | 0.465010 | 2_1:+17523632 | Msa0198820:CDS |
| AAGAAAAGGATTTGTCTTTG+TGG | 0.466796 | 2_1:+17522607 | Msa0198820:CDS |
| TGAAAAGGAAAGAAAGGAAA+AGG | 0.467444 | 2_1:-17522008 | None:intergenic |
| GCTCTTTCTTTGAAGGTCCT+GGG | 0.469920 | 2_1:-17523037 | None:intergenic |
| GAAGTTTGAAAAGGAAAGAA+AGG | 0.470868 | 2_1:-17522014 | None:intergenic |
| AAAGAAGAAGGTGGTGAAGA+GGG | 0.471661 | 2_1:+17522537 | Msa0198820:CDS |
| TGTTGAAGCAAAGGAATCAA+TGG | 0.472432 | 2_1:+17522326 | Msa0198820:CDS |
| GGTTTATATGAAGTTTGAAA+AGG | 0.473857 | 2_1:-17522023 | None:intergenic |
| GTGTATGAGCCCTCATCATT+GGG | 0.473892 | 2_1:-17524413 | None:intergenic |
| GTTGTTGTGTTTGTGAAAGG+TGG | 0.477554 | 2_1:-17522059 | None:intergenic |
| AGAAAAGGATTTGTCTTTGT+GGG | 0.480642 | 2_1:+17522608 | Msa0198820:CDS |
| AGTGTTTCAGTGACCTTAGC+GGG | 0.483761 | 2_1:-17523505 | None:intergenic |
| TGTGTATGAGCCCTCATCAT+TGG | 0.484245 | 2_1:-17524414 | None:intergenic |
| TTCTCTCACACTTTCCTCAA+AGG | 0.486409 | 2_1:+17522114 | Msa0198820:five_prime_UTR |
| AACCATAGTTTCAGCAGTCA+TGG | 0.488553 | 2_1:-17522244 | None:intergenic |
| AGGTTGGAAACACTTTGTGC+TGG | 0.495437 | 2_1:+17524342 | Msa0198820:intron |
| TATAGAGATTCCTGCATTGG+AGG | 0.495571 | 2_1:+17523742 | Msa0198820:CDS |
| TTGCCAAGCAAAGGAAATGA+AGG | 0.497177 | 2_1:+17522642 | Msa0198820:CDS |
| GATAGATACATCACTGGCTC+AGG | 0.497814 | 2_1:-17524747 | None:intergenic |
| AGAAGAGAAAAGGGTTGAAG+AGG | 0.500355 | 2_1:+17522581 | Msa0198820:CDS |
| ATTGTGAGAATAACCTTCCC+AGG | 0.508061 | 2_1:-17524509 | None:intergenic |
| AGCTCTTGTTGTTCTTGTAA+CGG | 0.509938 | 2_1:-17524568 | None:intergenic |
| TTTGATTGAGTTTAGATCAA+AGG | 0.509973 | 2_1:+17522443 | Msa0198820:CDS |
| TGTTTCAGAACTCATTCTCA+AGG | 0.510830 | 2_1:+17523703 | Msa0198820:CDS |
| GCTTCTGCTGCTTATATGAA+CGG | 0.524197 | 2_1:+17522807 | Msa0198820:CDS |
| GAGAACAAGACATACCTTTG+AGG | 0.524295 | 2_1:-17522128 | None:intergenic |
| AACTATAGAGATTCCTGCAT+TGG | 0.526873 | 2_1:+17523739 | Msa0198820:CDS |
| AAAGGTGGAGTGAGTTGTGG+GGG | 0.529910 | 2_1:-17522044 | None:intergenic |
| TGAAGAAAGTGTTGAAGCAA+AGG | 0.530342 | 2_1:+17522317 | Msa0198820:CDS |
| GTTCTGAAACAGAAGCATCT+TGG | 0.530758 | 2_1:-17523691 | None:intergenic |
| GGGTTGGGAGGTAAGTTACA+AGG | 0.531439 | 2_1:+17524379 | Msa0198820:CDS |
| CTCTTTCTTTGAAGGTCCTG+GGG | 0.533455 | 2_1:-17523036 | None:intergenic |
| TGTGGTTGCTCGTCCCGCTA+AGG | 0.534020 | 2_1:+17523492 | Msa0198820:CDS |
| CAAGAACAATGAACCTGGGA+AGG | 0.538958 | 2_1:+17524496 | Msa0198820:CDS |
| AGAGGGTGAGAAAGTTGTGA+AGG | 0.539054 | 2_1:+17522554 | Msa0198820:CDS |
| GTAGTTGTTGTGTTTGTGAA+AGG | 0.543221 | 2_1:-17522062 | None:intergenic |
| AAATAGGTACATTCCAATTG+AGG | 0.545143 | 2_1:+17523613 | Msa0198820:intron |
| GGTTGGAAACACTTTGTGCT+GGG | 0.556295 | 2_1:+17524343 | Msa0198820:intron |
| GAAAGTGTGAGAGAAAATTG+AGG | 0.560804 | 2_1:-17522106 | None:intergenic |
| GAAAGGTGGAGTGAGTTGTG+GGG | 0.561189 | 2_1:-17522045 | None:intergenic |
| GAAAGAAGAAGGTGGTGAAG+AGG | 0.561752 | 2_1:+17522536 | Msa0198820:CDS |
| ACTTTCAAGAACAATGAACC+TGG | 0.565748 | 2_1:+17524491 | Msa0198820:CDS |
| AAGAAGATAGGTTCACAAGA+AGG | 0.566410 | 2_1:+17524455 | Msa0198820:CDS |
| AATGATCTTAAGAATTCCCC+AGG | 0.566461 | 2_1:+17523020 | Msa0198820:CDS |
| GGACAATTACCCTGAATTGG+TGG | 0.572018 | 2_1:+17523097 | Msa0198820:CDS |
| AAAGGAAAGAAAGGAAAAGG+TGG | 0.573599 | 2_1:-17522005 | None:intergenic |
| TTAACTTTGGTGGTTTCAAG+AGG | 0.578804 | 2_1:+17523645 | Msa0198820:CDS |
| CAGAAGCTGAATTTGAAACC+AGG | 0.580201 | 2_1:+17522972 | Msa0198820:CDS |
| ATGAAACCAAATACACACAA+TGG | 0.580373 | 2_1:-17524630 | None:intergenic |
| GGAATTTGTTCCCAATGATG+AGG | 0.582127 | 2_1:+17524403 | Msa0198820:CDS |
| AGAAGAAGCCCAGAAAGTTG+AGG | 0.591236 | 2_1:+17522269 | Msa0198820:CDS |
| GAAAAGGATTTGTCTTTGTG+GGG | 0.592402 | 2_1:+17522609 | Msa0198820:CDS |
| GAATTTGTTCCCAATGATGA+GGG | 0.593569 | 2_1:+17524404 | Msa0198820:CDS |
| CAGTGTTTCAGTGACCTTAG+CGG | 0.595987 | 2_1:-17523506 | None:intergenic |
| AGATGAGATAGATACATCAC+TGG | 0.598675 | 2_1:-17524753 | None:intergenic |
| GAAGACACTTAAATGGAGGA+AGG | 0.599488 | 2_1:+17522737 | Msa0198820:CDS |
| AGGAAATGAAGGAGTTGATG+TGG | 0.611522 | 2_1:+17522653 | Msa0198820:CDS |
| TTGAGAGCATAGTACCAGAA+AGG | 0.611651 | 2_1:-17523424 | None:intergenic |
| TAACTTTGGTGGTTTCAAGA+GGG | 0.622260 | 2_1:+17523646 | Msa0198820:CDS |
| CTATAGATGTTGTAACACAC+AGG | 0.639890 | 2_1:-17522849 | None:intergenic |
| CTTTCAAGAACAATGAACCT+GGG | 0.640545 | 2_1:+17524492 | Msa0198820:CDS |
| TGAAACCACCAAAGTTAACA+GGG | 0.657918 | 2_1:-17523640 | None:intergenic |
| AAGGAAAGAAAGGAAAAGGT+GGG | 0.658363 | 2_1:-17522004 | None:intergenic |
| GAAGCTTTGAAAGAAGAAGG+TGG | 0.663635 | 2_1:+17522528 | Msa0198820:CDS |
| TGAAGAAGACACTTAAATGG+AGG | 0.668116 | 2_1:+17522733 | Msa0198820:CDS |
| AGCAAAGAAGAAACACCACC+TGG | 0.670300 | 2_1:-17522990 | None:intergenic |
| ATGAACGGTGTTGATCGCGA+AGG | 0.683407 | 2_1:+17522822 | Msa0198820:CDS |
| TTGGGAGGTAAGTTACAAGG+AGG | 0.694505 | 2_1:+17524382 | Msa0198820:CDS |
| TATAGATGTTGTAACACACA+GGG | 0.704028 | 2_1:-17522848 | None:intergenic |
| AAGCTGAATTTGAAACCAGG+TGG | 0.704521 | 2_1:+17522975 | Msa0198820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTATCAAAAGACTTTT+GGG | + | chr2_1:17522889-17522908 | Msa0198820:CDS | 20.0% |
| !!! | GAAAAAGAAACTTACATTTT+TGG | - | chr2_1:17523123-17523142 | None:intergenic | 20.0% |
| !! | GTGATACTATTATAAGAAAA+TGG | + | chr2_1:17523238-17523257 | Msa0198820:intron | 20.0% |
| !!! | GAAATGATTAATTGATTTTG+AGG | - | chr2_1:17523543-17523562 | None:intergenic | 20.0% |
| !! | TTAAATCGTTTAATCAAACA+TGG | + | chr2_1:17524164-17524183 | Msa0198820:intron | 20.0% |
| !!! | TCTAAAATCAAATGCAAAAT+TGG | + | chr2_1:17524288-17524307 | Msa0198820:intron | 20.0% |
| !!! | AAGGTTTTTTGTCTTTTAAT+AGG | + | chr2_1:17524322-17524341 | Msa0198820:intron | 20.0% |
| !!! | TTTTTTGTCTTTTAATAGGT+TGG | + | chr2_1:17524326-17524345 | Msa0198820:intron | 20.0% |
| !! | CTTCATAATTCAATTCTTTA+AGG | - | chr2_1:17524596-17524615 | None:intergenic | 20.0% |
| !!! | TTCATTTAGATTTTGAAAGT+AGG | + | chr2_1:17524648-17524667 | Msa0198820:three_prime_UTR | 20.0% |
| ! | GGTTTATATGAAGTTTGAAA+AGG | - | chr2_1:17522026-17522045 | None:intergenic | 25.0% |
| ! | TTCTCATCACTTTAAATTTC+TGG | + | chr2_1:17522153-17522172 | Msa0198820:intron | 25.0% |
| ! | TCTCATCACTTTAAATTTCT+GGG | + | chr2_1:17522154-17522173 | Msa0198820:intron | 25.0% |
| !!! | GTCTCAAAATTCTCTTTTTT+TGG | + | chr2_1:17522180-17522199 | Msa0198820:intron | 25.0% |
| ! | TGAGAAATGTTCATCTTATA+AGG | + | chr2_1:17522374-17522393 | Msa0198820:CDS | 25.0% |
| ! | TTTGATTGAGTTTAGATCAA+AGG | + | chr2_1:17522443-17522462 | Msa0198820:CDS | 25.0% |
| !! | TTCTTCCTTTTTCTCAAAAA+GGG | - | chr2_1:17522493-17522512 | None:intergenic | 25.0% |
| !! | GAGATTTATCAAAAGACTTT+TGG | + | chr2_1:17522888-17522907 | Msa0198820:CDS | 25.0% |
| !! | TTTGTTCTTTGAGTTAAGAA+TGG | - | chr2_1:17523463-17523482 | None:intergenic | 25.0% |
| !! | TTTGAGATGGAAAGTAAATA+AGG | - | chr2_1:17523596-17523615 | None:intergenic | 25.0% |
| ! | ATTTACTTTCCATCTCAAAT+AGG | + | chr2_1:17523597-17523616 | Msa0198820:intron | 25.0% |
| ! | CTTATACATAAGAACTGATA+TGG | + | chr2_1:17524118-17524137 | Msa0198820:intron | 25.0% |
| ! | AAAATTGGACACATTCTAAA+AGG | + | chr2_1:17524303-17524322 | Msa0198820:intron | 25.0% |
| ! | TACACAATCATTGTTCAAAA+AGG | + | chr2_1:17524431-17524450 | Msa0198820:CDS | 25.0% |
| ! | ACACAATCATTGTTCAAAAA+GGG | + | chr2_1:17524432-17524451 | Msa0198820:CDS | 25.0% |
| !!! | ATTTAGATTTTGAAAGTAGG+TGG | + | chr2_1:17524651-17524670 | Msa0198820:three_prime_UTR | 25.0% |
| !!! | AGAGTTTTGAAGACTAAAAA+AGG | + | chr2_1:17524687-17524706 | Msa0198820:three_prime_UTR | 25.0% |
| !!! | TTTTTTAGTTGAAGTCTTCA+AGG | - | chr2_1:17524811-17524830 | None:intergenic | 25.0% |
| ! | GAAGACTTCAACTAAAAAAT+TGG | + | chr2_1:17524812-17524831 | Msa0198820:three_prime_UTR | 25.0% |
| TGAAAAGGAAAGAAAGGAAA+AGG | - | chr2_1:17522011-17522030 | None:intergenic | 30.0% | |
| GAAGTTTGAAAAGGAAAGAA+AGG | - | chr2_1:17522017-17522036 | None:intergenic | 30.0% | |
| ! | CTTCTTCCTTTTTCTCAAAA+AGG | - | chr2_1:17522494-17522513 | None:intergenic | 30.0% |
| ! | TTTCAAAGCTTCAACCTTTT+TGG | - | chr2_1:17522520-17522539 | None:intergenic | 30.0% |
| AAGAAAAGGATTTGTCTTTG+TGG | + | chr2_1:17522607-17522626 | Msa0198820:CDS | 30.0% | |
| AGAAAAGGATTTGTCTTTGT+GGG | + | chr2_1:17522608-17522627 | Msa0198820:CDS | 30.0% | |
| !!! | TGGTTTTGTTGAAGTTTTTG+AGG | + | chr2_1:17522673-17522692 | Msa0198820:CDS | 30.0% |
| !!! | GGTTTTGTTGAAGTTTTTGA+GGG | + | chr2_1:17522674-17522693 | Msa0198820:CDS | 30.0% |
| TGTTGAAGAAGACACTTAAA+TGG | + | chr2_1:17522730-17522749 | Msa0198820:CDS | 30.0% | |
| GAAGGAAATGAAGATTGATT+CGG | + | chr2_1:17522755-17522774 | Msa0198820:CDS | 30.0% | |
| !!! | AATGAAGATTGATTCGGTTT+TGG | + | chr2_1:17522761-17522780 | Msa0198820:CDS | 30.0% |
| !!! | AGAAGATTTTGGTTCTGATT+TGG | + | chr2_1:17522785-17522804 | Msa0198820:CDS | 30.0% |
| TATAGATGTTGTAACACACA+GGG | - | chr2_1:17522851-17522870 | None:intergenic | 30.0% | |
| AACATCTATAGTGTGTTTGA+TGG | + | chr2_1:17522861-17522880 | Msa0198820:CDS | 30.0% | |
| !! | AGAGAAAAGAGTTTTTGAGA+TGG | + | chr2_1:17522922-17522941 | Msa0198820:CDS | 30.0% |
| ATTCTAAGCTCTTTCTTTGA+AGG | - | chr2_1:17523047-17523066 | None:intergenic | 30.0% | |
| ! | TTTTCATCAATGTTCCTTTC+TGG | + | chr2_1:17523410-17523429 | Msa0198820:CDS | 30.0% |
| AAGAACAAAGAGCAAATTTG+TGG | + | chr2_1:17523474-17523493 | Msa0198820:CDS | 30.0% | |
| AAATAGGTACATTCCAATTG+AGG | + | chr2_1:17523613-17523632 | Msa0198820:intron | 30.0% | |
| ATAGTAGCTGTGAGATTATT+TGG | + | chr2_1:17524005-17524024 | Msa0198820:intron | 30.0% | |
| TAGTAGCTGTGAGATTATTT+GGG | + | chr2_1:17524006-17524025 | Msa0198820:intron | 30.0% | |
| TATGGTGTGAATTCTTAACA+TGG | + | chr2_1:17524136-17524155 | Msa0198820:intron | 30.0% | |
| !! | GCATTTGATTTTAGAAGAAC+TGG | - | chr2_1:17524283-17524302 | None:intergenic | 30.0% |
| !! | TTCTTGAAAGTGTTCCTAAT+AGG | - | chr2_1:17524482-17524501 | None:intergenic | 30.0% |
| ACTCATCAAACAAAAAGAAG+AGG | + | chr2_1:17524537-17524556 | Msa0198820:CDS | 30.0% | |
| CTCATCAAACAAAAAGAAGA+GGG | + | chr2_1:17524538-17524557 | Msa0198820:CDS | 30.0% | |
| TTTGTTCCATTGTGTGTATT+TGG | + | chr2_1:17524624-17524643 | Msa0198820:three_prime_UTR | 30.0% | |
| ATGAAACCAAATACACACAA+TGG | - | chr2_1:17524633-17524652 | None:intergenic | 30.0% | |
| GTAGTTGTTGTGTTTGTGAA+AGG | - | chr2_1:17522065-17522084 | None:intergenic | 35.0% | |
| ! | GAAAGTGTGAGAGAAAATTG+AGG | - | chr2_1:17522109-17522128 | None:intergenic | 35.0% |
| AACAACAACCTCAACTTTCT+GGG | - | chr2_1:17522280-17522299 | None:intergenic | 35.0% | |
| !! | TGAAGAAAGTGTTGAAGCAA+AGG | + | chr2_1:17522317-17522336 | Msa0198820:CDS | 35.0% |
| TGTTGAAGCAAAGGAATCAA+TGG | + | chr2_1:17522326-17522345 | Msa0198820:CDS | 35.0% | |
| CATTTCTCAACTGTCTTTGT+GGG | - | chr2_1:17522363-17522382 | None:intergenic | 35.0% | |
| ACATTTCTCAACTGTCTTTG+TGG | - | chr2_1:17522364-17522383 | None:intergenic | 35.0% | |
| TCTCAAAGAGTTTGAGAAGA+AGG | + | chr2_1:17522419-17522438 | Msa0198820:CDS | 35.0% | |
| ! | AAGGTTGAAGAAGCAGTTTT+AGG | + | chr2_1:17522462-17522481 | Msa0198820:CDS | 35.0% |
| ! | AGGTTGAAGAAGCAGTTTTA+GGG | + | chr2_1:17522463-17522482 | Msa0198820:CDS | 35.0% |
| !! | GAACACCCTTTTTGAGAAAA+AGG | + | chr2_1:17522485-17522504 | Msa0198820:CDS | 35.0% |
| AAAGGAAGAAGAGACCAAAA+AGG | + | chr2_1:17522503-17522522 | Msa0198820:CDS | 35.0% | |
| !! | GTTGAAGCTTTGAAAGAAGA+AGG | + | chr2_1:17522525-17522544 | Msa0198820:CDS | 35.0% |
| TGAAGGAAGAAGAAGAGAAA+AGG | + | chr2_1:17522571-17522590 | Msa0198820:CDS | 35.0% | |
| GAAGGAAGAAGAAGAGAAAA+GGG | + | chr2_1:17522572-17522591 | Msa0198820:CDS | 35.0% | |
| GAAAAGGATTTGTCTTTGTG+GGG | + | chr2_1:17522609-17522628 | Msa0198820:CDS | 35.0% | |
| TGAAGAAGACACTTAAATGG+AGG | + | chr2_1:17522733-17522752 | Msa0198820:CDS | 35.0% | |
| !!! | TCGGTTTTGGAAGAAGATTT+TGG | + | chr2_1:17522774-17522793 | Msa0198820:CDS | 35.0% |
| CTATAGATGTTGTAACACAC+AGG | - | chr2_1:17522852-17522871 | None:intergenic | 35.0% | |
| !!! | GAAAAGAGTTTTTGAGATGG+AGG | + | chr2_1:17522925-17522944 | Msa0198820:CDS | 35.0% |
| AATGATCTTAAGAATTCCCC+AGG | + | chr2_1:17523020-17523039 | Msa0198820:CDS | 35.0% | |
| GTTTACGTTGATACTAACAC+CGG | + | chr2_1:17523191-17523210 | Msa0198820:intron | 35.0% | |
| ATTGTTACTGAATCTCGTGT+TGG | + | chr2_1:17523268-17523287 | Msa0198820:intron | 35.0% | |
| TTAGACACTAACATGTGTAG+CGG | + | chr2_1:17523293-17523312 | Msa0198820:intron | 35.0% | |
| AACGCGACATTACAGATTAA+AGG | - | chr2_1:17523331-17523350 | None:intergenic | 35.0% | |
| TTTAATCTGTAATGTCGCGT+TGG | + | chr2_1:17523330-17523349 | Msa0198820:intron | 35.0% | |
| TGGAATGTACCTATTTGAGA+TGG | - | chr2_1:17523609-17523628 | None:intergenic | 35.0% | |
| TGAAACCACCAAAGTTAACA+GGG | - | chr2_1:17523643-17523662 | None:intergenic | 35.0% | |
| TTGAAACCACCAAAGTTAAC+AGG | - | chr2_1:17523644-17523663 | None:intergenic | 35.0% | |
| ! | TTAACTTTGGTGGTTTCAAG+AGG | + | chr2_1:17523645-17523664 | Msa0198820:CDS | 35.0% |
| ! | TAACTTTGGTGGTTTCAAGA+GGG | + | chr2_1:17523646-17523665 | Msa0198820:CDS | 35.0% |
| GAGAATGATTCTGAGTTCTT+TGG | + | chr2_1:17523668-17523687 | Msa0198820:CDS | 35.0% | |
| TGTTTCAGAACTCATTCTCA+AGG | + | chr2_1:17523703-17523722 | Msa0198820:CDS | 35.0% | |
| AACTATAGAGATTCCTGCAT+TGG | + | chr2_1:17523739-17523758 | Msa0198820:CDS | 35.0% | |
| CATGGTGTGAATTCTTAACT+TGG | + | chr2_1:17524182-17524201 | Msa0198820:intron | 35.0% | |
| ! | GAATTTGTTCCCAATGATGA+GGG | + | chr2_1:17524404-17524423 | Msa0198820:CDS | 35.0% |
| GTTCAAAAAGGGAAGAAGAT+AGG | + | chr2_1:17524443-17524462 | Msa0198820:CDS | 35.0% | |
| AAGAAGATAGGTTCACAAGA+AGG | + | chr2_1:17524455-17524474 | Msa0198820:CDS | 35.0% | |
| ACTTTCAAGAACAATGAACC+TGG | + | chr2_1:17524491-17524510 | Msa0198820:CDS | 35.0% | |
| CTTTCAAGAACAATGAACCT+GGG | + | chr2_1:17524492-17524511 | Msa0198820:CDS | 35.0% | |
| !! | AGCTCTTGTTGTTCTTGTAA+CGG | - | chr2_1:17524571-17524590 | None:intergenic | 35.0% |
| AGATGAGATAGATACATCAC+TGG | - | chr2_1:17524756-17524775 | None:intergenic | 35.0% | |
| GTTGTTGTGTTTGTGAAAGG+TGG | - | chr2_1:17522062-17522081 | None:intergenic | 40.0% | |
| TTCTCTCACACTTTCCTCAA+AGG | + | chr2_1:17522114-17522133 | Msa0198820:five_prime_UTR | 40.0% | |
| GAGAACAAGACATACCTTTG+AGG | - | chr2_1:17522131-17522150 | None:intergenic | 40.0% | |
| AACCATGACTGCTGAAACTA+TGG | + | chr2_1:17522242-17522261 | Msa0198820:exon | 40.0% | |
| AACCATAGTTTCAGCAGTCA+TGG | - | chr2_1:17522247-17522266 | None:intergenic | 40.0% | |
| CAACAACAACCTCAACTTTC+TGG | - | chr2_1:17522281-17522300 | None:intergenic | 40.0% | |
| ! | GTTGAGGTTGTTGTTGAAGA+AGG | + | chr2_1:17522285-17522304 | Msa0198820:CDS | 40.0% |
| !! | GAAGCTTTGAAAGAAGAAGG+TGG | + | chr2_1:17522528-17522547 | Msa0198820:CDS | 40.0% |
| AAAGAAGAAGGTGGTGAAGA+GGG | + | chr2_1:17522537-17522556 | Msa0198820:CDS | 40.0% | |
| AGAAGAGAAAAGGGTTGAAG+AGG | + | chr2_1:17522581-17522600 | Msa0198820:CDS | 40.0% | |
| TTGCCAAGCAAAGGAAATGA+AGG | + | chr2_1:17522642-17522661 | Msa0198820:CDS | 40.0% | |
| ACTCCTTCATTTCCTTTGCT+TGG | - | chr2_1:17522648-17522667 | None:intergenic | 40.0% | |
| !! | AGGAAATGAAGGAGTTGATG+TGG | + | chr2_1:17522653-17522672 | Msa0198820:CDS | 40.0% |
| GAAGACACTTAAATGGAGGA+AGG | + | chr2_1:17522737-17522756 | Msa0198820:CDS | 40.0% | |
| ! | GCTTCTGCTGCTTATATGAA+CGG | + | chr2_1:17522807-17522826 | Msa0198820:CDS | 40.0% |
| !! | TCAAAAGACTTTTGGGAGTG+AGG | + | chr2_1:17522896-17522915 | Msa0198820:CDS | 40.0% |
| GGTGTTCTGTTATGGAGAAA+TGG | + | chr2_1:17522946-17522965 | Msa0198820:CDS | 40.0% | |
| ! | CAGAAGCTGAATTTGAAACC+AGG | + | chr2_1:17522972-17522991 | Msa0198820:CDS | 40.0% |
| ! | AAGCTGAATTTGAAACCAGG+TGG | + | chr2_1:17522975-17522994 | Msa0198820:CDS | 40.0% |
| GCAAACTGTTACAATGTTGC+AGG | + | chr2_1:17523076-17523095 | Msa0198820:CDS | 40.0% | |
| !!! | CATTTTTGGCCACCAATTCA+GGG | - | chr2_1:17523109-17523128 | None:intergenic | 40.0% |
| !!! | ACATTTTTGGCCACCAATTC+AGG | - | chr2_1:17523110-17523129 | None:intergenic | 40.0% |
| ! | TTGAGAGCATAGTACCAGAA+AGG | - | chr2_1:17523427-17523446 | None:intergenic | 40.0% |
| TTAACAGGGATCTCCTCAAT+TGG | - | chr2_1:17523629-17523648 | None:intergenic | 40.0% | |
| !! | GTTCTGAAACAGAAGCATCT+TGG | - | chr2_1:17523694-17523713 | None:intergenic | 40.0% |
| TATAGAGATTCCTGCATTGG+AGG | + | chr2_1:17523742-17523761 | Msa0198820:CDS | 40.0% | |
| ! | GTAGTTTTTACCTCCAATGC+AGG | - | chr2_1:17523755-17523774 | None:intergenic | 40.0% |
| TCCACTCTATAGTGTGCTTT+AGG | + | chr2_1:17523795-17523814 | Msa0198820:intron | 40.0% | |
| TCCTAAAGCACACTATAGAG+TGG | - | chr2_1:17523799-17523818 | None:intergenic | 40.0% | |
| AGGAATATGCAGTGCATGTT+AGG | + | chr2_1:17523815-17523834 | Msa0198820:intron | 40.0% | |
| TTTGAGAAAGACTCTGAGCT+AGG | + | chr2_1:17523914-17523933 | Msa0198820:intron | 40.0% | |
| ! | TTTTGGACAAGTGCATGTGA+GGG | + | chr2_1:17523945-17523964 | Msa0198820:intron | 40.0% |
| CTTGTAGAGCTCATGCATAA+AGG | - | chr2_1:17524049-17524068 | None:intergenic | 40.0% | |
| ! | GGAATTTGTTCCCAATGATG+AGG | + | chr2_1:17524403-17524422 | Msa0198820:CDS | 40.0% |
| GTTCACAAGAAGGACCTATT+AGG | + | chr2_1:17524465-17524484 | Msa0198820:CDS | 40.0% | |
| ATTGTGAGAATAACCTTCCC+AGG | - | chr2_1:17524512-17524531 | None:intergenic | 40.0% | |
| TGAAAGGTGGAGTGAGTTGT+GGG | - | chr2_1:17522049-17522068 | None:intergenic | 45.0% | |
| AGAAGAAGCCCAGAAAGTTG+AGG | + | chr2_1:17522269-17522288 | Msa0198820:CDS | 45.0% | |
| GAAAGAAGAAGGTGGTGAAG+AGG | + | chr2_1:17522536-17522555 | Msa0198820:CDS | 45.0% | |
| AGAGGGTGAGAAAGTTGTGA+AGG | + | chr2_1:17522554-17522573 | Msa0198820:CDS | 45.0% | |
| AGAGAAAAGGGTTGAAGAGG+TGG | + | chr2_1:17522584-17522603 | Msa0198820:CDS | 45.0% | |
| GGTTGAAGAGGTGGAAGAAA+AGG | + | chr2_1:17522593-17522612 | Msa0198820:CDS | 45.0% | |
| !!! | GTGTCACTTTTGCCAAGCAA+AGG | + | chr2_1:17522633-17522652 | Msa0198820:CDS | 45.0% |
| TTTGAGGGCAAGAGAGTTCA+AGG | + | chr2_1:17522689-17522708 | Msa0198820:CDS | 45.0% | |
| !! | GAGATGGAGGTGTTCTGTTA+TGG | + | chr2_1:17522938-17522957 | Msa0198820:CDS | 45.0% |
| AGCAAAGAAGAAACACCACC+TGG | - | chr2_1:17522993-17523012 | None:intergenic | 45.0% | |
| ! | CTCTTTCTTTGAAGGTCCTG+GGG | - | chr2_1:17523039-17523058 | None:intergenic | 45.0% |
| ! | GCTCTTTCTTTGAAGGTCCT+GGG | - | chr2_1:17523040-17523059 | None:intergenic | 45.0% |
| ! | AGCTCTTTCTTTGAAGGTCC+TGG | - | chr2_1:17523041-17523060 | None:intergenic | 45.0% |
| GCAGGACAATTACCCTGAAT+TGG | + | chr2_1:17523094-17523113 | Msa0198820:CDS | 45.0% | |
| GGACAATTACCCTGAATTGG+TGG | + | chr2_1:17523097-17523116 | Msa0198820:CDS | 45.0% | |
| ! | GTAATGTCGCGTTGGTAGAT+AGG | + | chr2_1:17523338-17523357 | Msa0198820:intron | 45.0% |
| AGTGTTTCAGTGACCTTAGC+GGG | - | chr2_1:17523508-17523527 | None:intergenic | 45.0% | |
| CAGTGTTTCAGTGACCTTAG+CGG | - | chr2_1:17523509-17523528 | None:intergenic | 45.0% | |
| GAGGAGATCCCTGTTAACTT+TGG | + | chr2_1:17523632-17523651 | Msa0198820:CDS | 45.0% | |
| GAGATCCCTGTTAACTTTGG+TGG | + | chr2_1:17523635-17523654 | Msa0198820:CDS | 45.0% | |
| TCAGAACTCATTCTCAAGGC+TGG | + | chr2_1:17523707-17523726 | Msa0198820:CDS | 45.0% | |
| !!! | TGAGCTAGGCTGGTTTGTTT+TGG | + | chr2_1:17523928-17523947 | Msa0198820:intron | 45.0% |
| !! | GTTTTGGACAAGTGCATGTG+AGG | + | chr2_1:17523944-17523963 | Msa0198820:intron | 45.0% |
| AGGTTGGAAACACTTTGTGC+TGG | + | chr2_1:17524342-17524361 | Msa0198820:intron | 45.0% | |
| GGTTGGAAACACTTTGTGCT+GGG | + | chr2_1:17524343-17524362 | Msa0198820:intron | 45.0% | |
| AAACACTTTGTGCTGGGACT+TGG | + | chr2_1:17524349-17524368 | Msa0198820:CDS | 45.0% | |
| TTGGGAGGTAAGTTACAAGG+AGG | + | chr2_1:17524382-17524401 | Msa0198820:CDS | 45.0% | |
| GTGTATGAGCCCTCATCATT+GGG | - | chr2_1:17524416-17524435 | None:intergenic | 45.0% | |
| TGTGTATGAGCCCTCATCAT+TGG | - | chr2_1:17524417-17524436 | None:intergenic | 45.0% | |
| CAAGAACAATGAACCTGGGA+AGG | + | chr2_1:17524496-17524515 | Msa0198820:CDS | 45.0% | |
| !! | GATAGATACATCACTGGCTC+AGG | - | chr2_1:17524750-17524769 | None:intergenic | 45.0% |
| !! | TATAATTAAAAAAAAAGTAA+AGG | - | chr2_1:17523168-17523187 | None:intergenic | 5.0% |
| AAAGGTGGAGTGAGTTGTGG+GGG | - | chr2_1:17522047-17522066 | None:intergenic | 50.0% | |
| GAAAGGTGGAGTGAGTTGTG+GGG | - | chr2_1:17522048-17522067 | None:intergenic | 50.0% | |
| GTGAAAGGTGGAGTGAGTTG+TGG | - | chr2_1:17522050-17522069 | None:intergenic | 50.0% | |
| !! | ATGAACGGTGTTGATCGCGA+AGG | + | chr2_1:17522822-17522841 | Msa0198820:CDS | 50.0% |
| ACGTGTGTCAGTGTCATGTC+CGG | - | chr2_1:17523213-17523232 | None:intergenic | 50.0% | |
| AGAAAGACTCTGAGCTAGGC+TGG | + | chr2_1:17523918-17523937 | Msa0198820:intron | 50.0% | |
| !! | TGCTGGGACTTGGCTGTTTT+GGG | + | chr2_1:17524359-17524378 | Msa0198820:CDS | 50.0% |
| !!! | GGACTTGGCTGTTTTGGGTT+GGG | + | chr2_1:17524364-17524383 | Msa0198820:CDS | 50.0% |
| GGGTTGGGAGGTAAGTTACA+AGG | + | chr2_1:17524379-17524398 | Msa0198820:CDS | 50.0% | |
| ! | GTGCTGGGACTTGGCTGTTT+TGG | + | chr2_1:17524358-17524377 | Msa0198820:CDS | 55.0% |
| !! | GGGACTTGGCTGTTTTGGGT+TGG | + | chr2_1:17524363-17524382 | Msa0198820:CDS | 55.0% |
| !!! | CTTGGCTGTTTTGGGTTGGG+AGG | + | chr2_1:17524367-17524386 | Msa0198820:CDS | 55.0% |
| TGTGGTTGCTCGTCCCGCTA+AGG | + | chr2_1:17523492-17523511 | Msa0198820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 17522006 | 17524848 | 17522006 | ID=Msa0198820;Name=Msa0198820 |
| chr2_1 | mRNA | 17522006 | 17524848 | 17522006 | ID=Msa0198820-mRNA-1;Parent=Msa0198820;Name=Msa0198820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=143|1|1|1|0.75|0.6|5|250|468 |
| chr2_1 | exon | 17522006 | 17522135 | 17522006 | ID=Msa0198820-mRNA-1:exon:7418;Parent=Msa0198820-mRNA-1 |
| chr2_1 | exon | 17522233 | 17523127 | 17522233 | ID=Msa0198820-mRNA-1:exon:7419;Parent=Msa0198820-mRNA-1 |
| chr2_1 | exon | 17523409 | 17523533 | 17523409 | ID=Msa0198820-mRNA-1:exon:7420;Parent=Msa0198820-mRNA-1 |
| chr2_1 | exon | 17523619 | 17523763 | 17523619 | ID=Msa0198820-mRNA-1:exon:7421;Parent=Msa0198820-mRNA-1 |
| chr2_1 | exon | 17524344 | 17524848 | 17524344 | ID=Msa0198820-mRNA-1:exon:7422;Parent=Msa0198820-mRNA-1 |
| chr2_1 | five_prime_UTR | 17522006 | 17522135 | 17522006 | ID=Msa0198820-mRNA-1:five_prime_utr;Parent=Msa0198820-mRNA-1 |
| chr2_1 | five_prime_UTR | 17522233 | 17522245 | 17522233 | ID=Msa0198820-mRNA-1:five_prime_utr;Parent=Msa0198820-mRNA-1 |
| chr2_1 | CDS | 17522246 | 17523127 | 17522246 | ID=Msa0198820-mRNA-1:cds;Parent=Msa0198820-mRNA-1 |
| chr2_1 | CDS | 17523409 | 17523533 | 17523409 | ID=Msa0198820-mRNA-1:cds;Parent=Msa0198820-mRNA-1 |
| chr2_1 | CDS | 17523619 | 17523763 | 17523619 | ID=Msa0198820-mRNA-1:cds;Parent=Msa0198820-mRNA-1 |
| chr2_1 | CDS | 17524344 | 17524598 | 17524344 | ID=Msa0198820-mRNA-1:cds;Parent=Msa0198820-mRNA-1 |
| chr2_1 | three_prime_UTR | 17524599 | 17524848 | 17524599 | ID=Msa0198820-mRNA-1:three_prime_utr;Parent=Msa0198820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
