AlfalfaGEDB | Msa0094790

M. sativa cultivar zhongmu-4 / Msa0094790

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094790	G7JQ18	96.864	287	8	1	1	287	1	286	0.0	572

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa0094790	0.803596	3.231991e-49	-8.615850e-47
Msa0003080	Msa0094790	0.817542	3.124173e-52	-8.615850e-47
Msa0016040	Msa0094790	0.836655	8.241145e-57	-8.615850e-47
Msa0016530	Msa0094790	0.802913	4.477355e-49	-8.615850e-47
Msa0017670	Msa0094790	0.811205	7.864099e-51	-8.615850e-47
Msa0017930	Msa0094790	0.804514	2.082994e-49	-8.615850e-47
Msa0017950	Msa0094790	0.806303	8.782587e-50	-8.615850e-47
Msa0020540	Msa0094790	0.807425	5.086975e-50	-8.615850e-47
Msa0025160	Msa0094790	0.846202	2.519252e-59	-8.615850e-47
Msa0025580	Msa0094790	0.813582	2.379509e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094790	MtrunA17_Chr4g0069121	96.864	287	8	1	1	287	1	286	0.0	572
Msa0094790	MtrunA17_Chr4g0058901	35.374	294	162	10	2	280	10	290	7.30e-51	170
Msa0094790	MtrunA17_Chr4g0075211	32.443	262	149	13	34	277	38	289	7.64e-28	110
Msa0094790	MtrunA17_Chr2g0288891	33.203	256	135	13	32	265	22	263	1.33e-27	109
Msa0094790	MtrunA17_Chr8g0381971	30.712	267	156	11	15	265	10	263	1.92e-27	108
Msa0094790	MtrunA17_Chr5g0415341	31.439	264	164	9	13	264	8	266	2.90e-27	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0094790	AT3G17350.1	63.525	244	80	3	32	267	29	271	9.24e-112	325
Msa0094790	AT3G17350.2	64.167	240	77	3	34	265	31	269	1.12e-110	322
Msa0094790	AT5G50290.1	33.582	268	160	7	13	264	1	266	7.58e-47	159
Msa0094790	AT1G10380.2	34.800	250	136	9	34	264	29	270	6.22e-32	120
Msa0094790	AT1G10380.1	34.800	250	136	9	34	264	29	270	6.97e-32	120
Msa0094790	AT1G11915.1	31.203	266	162	8	5	255	4	263	2.64e-29	114

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Find 66 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGTCCTGTGATGG+AGG	0.608306	1_2:-78146405	None:intergenic
AAACCGAATGGGTAGTTTAT+AGG	0.261528	1_2:-78146171	None:intergenic
AAAGTTGTACACAATCTGGT+GGG	0.724462	1_2:+78146742	Msa0094790:CDS
AACCATCTTCCAAACCGAAT+GGG	0.514516	1_2:-78146182	None:intergenic
AAGGAGTGTACAATGCTCTT+TGG	0.408970	1_2:+78147337	Msa0094790:CDS
AAGTTTCACTAATTCAACAA+GGG	0.686221	1_2:+78146812	Msa0094790:CDS
ACAAAGTATGGTTTGGAGGG+TGG	0.526138	1_2:-78145986	None:intergenic
ACACAATCTGGTGGGATTTG+TGG	0.447706	1_2:+78146750	Msa0094790:CDS
ACCGGAAGCATGATATCAGA+AGG	0.604148	1_2:+78147318	Msa0094790:CDS
ACTAATTCAACAAGGGAATG+TGG	0.573682	1_2:+78146819	Msa0094790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAGAGAAGTAACTTT+GGG	-	chr1_2:78145967-78145986	None:intergenic	30.0%
CAAAGAAACAAAGTATGGTT+TGG	-	chr1_2:78145996-78146015	None:intergenic	30.0%
GAAAGCAAAGAAACAAAGTA+TGG	-	chr1_2:78146001-78146020	None:intergenic	30.0%
ATGAGTTTGAAGATTGTGAA+TGG	-	chr1_2:78146069-78146088	None:intergenic	30.0%
ATTCCTATAAACTACCCATT+CGG	+	chr1_2:78146168-78146187	Msa0094790:CDS	30.0%
AGTTTGAAAGAATAACTCAG+TGG	-	chr1_2:78146247-78146266	None:intergenic	30.0%
TTATTCTTTCAAACTCCTTC+TGG	+	chr1_2:78146252-78146271	Msa0094790:CDS	30.0%
TGACTACAACAAAAAAACCA+TGG	+	chr1_2:78146296-78146315	Msa0094790:CDS	30.0%
CAAGTTTCACTAATTCAACA+AGG	+	chr1_2:78146811-78146830	Msa0094790:CDS	30.0%
CTACTACTTGGTTTCTTATT+TGG	+	chr1_2:78146846-78146865	Msa0094790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	78145964	78147742	78145964	ID=Msa0094790;Name=Msa0094790
chr1_2	mRNA	78145964	78147742	78145964	ID=Msa0094790-mRNA-1;Parent=Msa0094790;Name=Msa0094790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=84\|0.5\|0.33\|0.66\|1\|1\|3\|0\|301
chr1_2	exon	78145964	78146840	78145964	ID=Msa0094790-mRNA-1:exon:27804;Parent=Msa0094790-mRNA-1
chr1_2	exon	78147310	78147374	78147310	ID=Msa0094790-mRNA-1:exon:27805;Parent=Msa0094790-mRNA-1
chr1_2	exon	78147695	78147742	78147695	ID=Msa0094790-mRNA-1:exon:27806;Parent=Msa0094790-mRNA-1
chr1_2	five_prime_UTR	78145964	78146047	78145964	ID=Msa0094790-mRNA-1:five_prime_utr;Parent=Msa0094790-mRNA-1
chr1_2	CDS	78146048	78146840	78146048	ID=Msa0094790-mRNA-1:cds;Parent=Msa0094790-mRNA-1
chr1_2	CDS	78147310	78147374	78147310	ID=Msa0094790-mRNA-1:cds;Parent=Msa0094790-mRNA-1
chr1_2	CDS	78147695	78147742	78147695	ID=Msa0094790-mRNA-1:cds;Parent=Msa0094790-mRNA-1

Gene Sequence

>Msa0094790

ATGCATCATCTTCTAACACCATTCACAATCTTCAAACTCATTATACTAACACTCCATCTACAACTACTACAAGCCATTCCCATTCACACACTCTCACCCTGCAAAACCTCATGTGGTACCATTCCTATAAACTACCCATTCGGTTTGGAAGATGGTTGTGGAGCACCACAGTTCAGAAACATGTTCAACTGCACAACCACTGAGTTATTCTTTCAAACTCCTTCTGGTTCTTACAAAGTTCAATCCATTGACTACAACAAAAAAACCATGGTACTCTACGACCCATCAATGTCAACTTGCTCCATTCTTCAACCTCATCATGATTTTCTCATGACAGATATTCAATCTGCTATTATTCCTCCATCACAGGACACTGTTTTTGTTCTGTTAAATTGCTCTATAGACTCTCCTGTTCTTAACCATTACAAATATCTTTGTTTTAACTTTGAAGGACACACTTGTGATGAGCTTTATGGTGGTTGCAATGCTTTTAGGGTGTTTCATTTGATGACAAATAGCTCACCACCACCTTGTTGTTTCACGAGCTATAATACTGTGAAGTTTATGAGTATGAATATTTTGGATTGTACACATTATACTAGTGTGTTTAATAGTGATAAATTGAGAGGTGTTGGTCCTTTGGATTGGGTTTATGGGATTAAGCTTTCTTTTAGTGTGCCTGATACTGGATGTGAAAGTTGTACACAATCTGGTGGGATTTGTGGGTTTGATACTGAAACTGAAGGTCTTCTTTGTCTCTGCTCAAGTTTCACTAATTCAACAAGGGAATGTGCTGCTGGAACCGGAAGCATGATATCAGAAGGAGTGTACAATGCTCTTTGGACACGGCACCAAGTGGTGGGCAATGAAGATTATTCTCTGTACCTCTCTAGTGATATAAAGTAG

Protein sequence

>Msa0094790

MHHLLTPFTIFKLIILTLHLQLLQAIPIHTLSPCKTSCGTIPINYPFGLEDGCGAPQFRNMFNCTTTELFFQTPSGSYKVQSIDYNKKTMVLYDPSMSTCSILQPHHDFLMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLMTNSSPPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDTGCESCTQSGGICGFDTETEGLLCLCSSFTNSTRECAAGTGSMISEGVYNALWTRHQVVGNEDYSLYLSSDIK*