Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258000 | XP_003608787.1 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258000 | sp|Q9LNA5|ACR8_ARATH | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa1258000 | 0.843841 | 1.093150e-58 | -8.615850e-47 |
| Msa0077560 | Msa1258000 | 0.846119 | 2.652519e-59 | -8.615850e-47 |
| Msa0082020 | Msa1258000 | 0.800888 | 1.166828e-48 | -8.615850e-47 |
| Msa0094780 | Msa1258000 | 0.802819 | 4.682527e-49 | -8.615850e-47 |
| Msa0102240 | Msa1258000 | 0.820330 | 7.260000e-53 | -8.615850e-47 |
| Msa0610700 | Msa1258000 | -0.806226 | 9.116010e-50 | -8.615850e-47 |
| Msa0611210 | Msa1258000 | 0.808236 | 3.419366e-50 | -8.615850e-47 |
| Msa0652770 | Msa1258000 | 0.810772 | 9.763281e-51 | -8.615850e-47 |
| Msa0662820 | Msa1258000 | 0.838613 | 2.590998e-57 | -8.615850e-47 |
| Msa0674480 | Msa1258000 | 0.815053 | 1.126022e-51 | -8.615850e-47 |
| Msa0693340 | Msa1258000 | -0.849793 | 2.573384e-60 | -8.615850e-47 |
| Msa0709440 | Msa1258000 | 0.801218 | 9.987019e-49 | -8.615850e-47 |
| Msa0734250 | Msa1258000 | 0.821429 | 4.056860e-53 | -8.615850e-47 |
| Msa0772220 | Msa1258000 | 0.802535 | 5.358075e-49 | -8.615850e-47 |
| Msa0776640 | Msa1258000 | 0.800429 | 1.447118e-48 | -8.615850e-47 |
| Msa0815970 | Msa1258000 | 0.804296 | 2.312987e-49 | -8.615850e-47 |
| Msa0125360 | Msa1258000 | 0.837085 | 6.398766e-57 | -8.615850e-47 |
| Msa0128460 | Msa1258000 | 0.800987 | 1.113465e-48 | -8.615850e-47 |
| Msa0142430 | Msa1258000 | 0.801845 | 7.429283e-49 | -8.615850e-47 |
| Msa0198820 | Msa1258000 | 0.802832 | 4.652499e-49 | -8.615850e-47 |
| Msa0204950 | Msa1258000 | 0.833451 | 5.294310e-56 | -8.615850e-47 |
| Msa1258000 | Msa1299740 | -0.820034 | 8.490033e-53 | -8.615850e-47 |
| Msa1258000 | Msa1340200 | 0.801280 | 9.700445e-49 | -8.615850e-47 |
| Msa1258000 | Msa1365820 | 0.836185 | 1.085192e-56 | -8.615850e-47 |
| Msa1258000 | Msa1368390 | 0.824871 | 6.380958e-54 | -8.615850e-47 |
| Msa1258000 | Msa1389900 | 0.803425 | 3.507981e-49 | -8.615850e-47 |
| Msa1258000 | Msa1391500 | 0.801790 | 7.626831e-49 | -8.615850e-47 |
| Msa1258000 | Msa1398810 | 0.823673 | 1.220236e-53 | -8.615850e-47 |
| Msa1258000 | Msa1401670 | 0.982915 | 2.448173e-156 | -8.615850e-47 |
| Msa1258000 | Msa1405460 | 0.832722 | 8.035708e-56 | -8.615850e-47 |
| Msa1258000 | Msa1412000 | 0.803224 | 3.861071e-49 | -8.615850e-47 |
| Msa1258000 | Msa1427110 | 0.804141 | 2.491294e-49 | -8.615850e-47 |
| Msa1258000 | Msa1464090 | 0.824579 | 7.478978e-54 | -8.615850e-47 |
| Msa0408380 | Msa1258000 | 0.804270 | 2.341386e-49 | -8.615850e-47 |
| Msa0409830 | Msa1258000 | 0.826346 | 2.852627e-54 | -8.615850e-47 |
| Msa1072940 | Msa1258000 | 0.816743 | 4.725418e-52 | -8.615850e-47 |
| Msa1074890 | Msa1258000 | 0.813372 | 2.645950e-51 | -8.615850e-47 |
| Msa1074900 | Msa1258000 | 0.811995 | 5.296311e-51 | -8.615850e-47 |
| Msa1106590 | Msa1258000 | 0.802255 | 6.119179e-49 | -8.615850e-47 |
| Msa0241610 | Msa1258000 | 0.863816 | 1.899368e-64 | -8.615850e-47 |
| Msa0249850 | Msa1258000 | 0.832720 | 8.046024e-56 | -8.615850e-47 |
| Msa0263230 | Msa1258000 | 0.805315 | 1.416314e-49 | -8.615850e-47 |
| Msa0269210 | Msa1258000 | 0.808913 | 2.452267e-50 | -8.615850e-47 |
| Msa0281470 | Msa1258000 | 0.832277 | 1.036263e-55 | -8.615850e-47 |
| Msa0288620 | Msa1258000 | 0.800879 | 1.171809e-48 | -8.615850e-47 |
| Msa0300840 | Msa1258000 | 0.816807 | 4.571351e-52 | -8.615850e-47 |
| Msa0307270 | Msa1258000 | 0.820000 | 8.643236e-53 | -8.615850e-47 |
| Msa0320600 | Msa1258000 | 0.831228 | 1.880371e-55 | -8.615850e-47 |
| Msa0338340 | Msa1258000 | 0.823016 | 1.737757e-53 | -8.615850e-47 |
| Msa0361910 | Msa1258000 | 0.821789 | 3.349230e-53 | -8.615850e-47 |
| Msa1115740 | Msa1258000 | 0.811204 | 7.870875e-51 | -8.615850e-47 |
| Msa1150960 | Msa1258000 | 0.805137 | 1.543539e-49 | -8.615850e-47 |
| Msa1158200 | Msa1258000 | 0.852227 | 5.302480e-61 | -8.615850e-47 |
| Msa1160920 | Msa1258000 | 0.810089 | 1.370770e-50 | -8.615850e-47 |
| Msa1162230 | Msa1258000 | 0.802367 | 5.802489e-49 | -8.615850e-47 |
| Msa1171290 | Msa1258000 | 0.800888 | 1.166437e-48 | -8.615850e-47 |
| Msa1184890 | Msa1258000 | 0.843798 | 1.122389e-58 | -8.615850e-47 |
| Msa1190160 | Msa1258000 | 0.963716 | 1.995732e-122 | -8.615850e-47 |
| Msa1190180 | Msa1258000 | 0.980583 | 1.485930e-150 | -8.615850e-47 |
| Msa1192560 | Msa1258000 | 0.802562 | 5.290333e-49 | -8.615850e-47 |
| Msa0519760 | Msa1258000 | 0.829272 | 5.648849e-55 | -8.615850e-47 |
| Msa0519810 | Msa1258000 | 0.811614 | 6.410093e-51 | -8.615850e-47 |
| Msa0519840 | Msa1258000 | 0.827952 | 1.177376e-54 | -8.615850e-47 |
| Msa0529030 | Msa1258000 | 0.829273 | 5.643537e-55 | -8.615850e-47 |
| Msa0534720 | Msa1258000 | 0.808575 | 2.895204e-50 | -8.615850e-47 |
| Msa0543560 | Msa1258000 | 0.807210 | 5.650828e-50 | -8.615850e-47 |
| Msa0555860 | Msa1258000 | -0.825194 | 5.354804e-54 | -8.615850e-47 |
| Msa0579070 | Msa1258000 | -0.820660 | 6.100700e-53 | -8.615850e-47 |
| Msa0597700 | Msa1258000 | 0.830447 | 2.922090e-55 | -8.615850e-47 |
| Msa0599420 | Msa1258000 | 0.810126 | 1.345699e-50 | -8.615850e-47 |
| Msa0865420 | Msa1258000 | 0.814029 | 1.896824e-51 | -8.615850e-47 |
| Msa0878280 | Msa1258000 | 0.802077 | 6.658312e-49 | -8.615850e-47 |
| Msa0945030 | Msa1258000 | 0.807540 | 4.808564e-50 | -8.615850e-47 |
| Msa0945190 | Msa1258000 | 0.805938 | 1.048331e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258000 | MtrunA17_Chr4g0056741 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Msa1258000 | MtrunA17_Chr5g0398581 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| Msa1258000 | MtrunA17_Chr5g0420221 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 3.43e-151 | 437 |
| Msa1258000 | MtrunA17_Chr7g0222461 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.11e-150 | 435 |
| Msa1258000 | MtrunA17_Chr7g0224571 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 2.48e-146 | 424 |
| Msa1258000 | MtrunA17_Chr3g0125661 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 1.97e-132 | 389 |
| Msa1258000 | MtrunA17_Chr1g0159541 | 46.698 | 424 | 196 | 6 | 3 | 399 | 6 | 426 | 3.32e-130 | 383 |
| Msa1258000 | MtrunA17_Chr5g0400941 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 6.28e-105 | 320 |
| Msa1258000 | MtrunA17_Chr4g0054261 | 38.551 | 428 | 227 | 7 | 9 | 400 | 31 | 458 | 8.26e-93 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258000 | AT1G12420.1 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Msa1258000 | AT4G22780.1 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1258000 | AT4G22780.2 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1258000 | AT1G12420.2 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.53e-177 | 499 |
| Msa1258000 | AT1G69040.2 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.44e-154 | 444 |
| Msa1258000 | AT1G69040.1 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.72e-154 | 444 |
| Msa1258000 | AT2G03730.2 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1258000 | AT2G03730.1 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1258000 | AT3G01990.7 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1258000 | AT3G01990.5 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1258000 | AT3G01990.11 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.79e-137 | 401 |
| Msa1258000 | AT3G01990.6 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.94e-137 | 402 |
| Msa1258000 | AT3G01990.10 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1258000 | AT3G01990.1 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1258000 | AT1G76990.4 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1258000 | AT1G76990.5 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1258000 | AT1G76990.2 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1258000 | AT1G76990.3 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1258000 | AT1G76990.1 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1258000 | AT5G25320.1 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.33e-113 | 342 |
| Msa1258000 | AT3G01990.9 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 2.06e-108 | 324 |
| Msa1258000 | AT3G01990.4 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.12e-108 | 324 |
| Msa1258000 | AT5G25320.3 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 3.01e-108 | 328 |
| Msa1258000 | AT3G01990.2 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.55e-108 | 323 |
| Msa1258000 | AT5G65890.1 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1258000 | AT5G65890.3 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1258000 | AT3G01990.3 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.10e-87 | 269 |
| Msa1258000 | AT5G65890.4 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1258000 | AT5G65890.2 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1258000 | AT3G01990.8 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 4.09e-87 | 268 |
| Msa1258000 | AT5G25320.2 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.97e-87 | 270 |
| Msa1258000 | AT5G65890.5 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.05e-62 | 207 |
| Msa1258000 | AT2G39570.1 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.59e-11 | 65.5 |
Find 152 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8_2:-59069500 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8_2:-59069552 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8_2:-59070216 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8_2:+59071031 | Msa1258000:CDS |
| ATTATTCCTTGCTTCAAGTT+TGG | 0.225846 | 8_2:+59071143 | Msa1258000:three_prime_UTR |
| CAAGCAAAGCACATTTAAAA+TGG | 0.244916 | 8_2:-59071287 | None:intergenic |
| TTATTCCTTGCTTCAAGTTT+GGG | 0.252486 | 8_2:+59071144 | Msa1258000:three_prime_UTR |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8_2:-59070162 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8_2:+59069930 | Msa1258000:CDS |
| TGAGAAGGAATAGGAGAGTT+TGG | 0.278470 | 8_2:+59068584 | Msa1258000:five_prime_UTR |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8_2:+59069501 | Msa1258000:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8_2:-59069375 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8_2:+59069688 | Msa1258000:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8_2:-59070535 | None:intergenic |
| TGTCTCATAACCGTCGTTTC+AGG | 0.310934 | 8_2:+59068734 | Msa1258000:five_prime_UTR |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8_2:-59070534 | None:intergenic |
| TGAATCTTTCTATGTATAGA+AGG | 0.325840 | 8_2:-59068685 | None:intergenic |
| TTGGTTGGATTGGATTCATT+TGG | 0.330750 | 8_2:+59071220 | Msa1258000:three_prime_UTR |
| AGGTAGAGGGAGGAACAATT+TGG | 0.330947 | 8_2:+59071411 | Msa1258000:three_prime_UTR |
| GAATGTAGAATATGATTCTT+TGG | 0.337577 | 8_2:+59071369 | Msa1258000:three_prime_UTR |
| TTTCTTGAATGCAGGGTGTT+AGG | 0.338412 | 8_2:+59070700 | Msa1258000:intron |
| TATTTGCGTGGACATCCTAT+TGG | 0.346323 | 8_2:-59071607 | None:intergenic |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8_2:+59071032 | Msa1258000:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8_2:+59070244 | Msa1258000:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8_2:+59070103 | Msa1258000:CDS |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8_2:+59070021 | Msa1258000:CDS |
| CCATCCCTCCAGCTGGATAA+AGG | 0.365406 | 8_2:-59071257 | None:intergenic |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8_2:-59070013 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8_2:+59070055 | Msa1258000:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8_2:-59070179 | None:intergenic |
| CAGAGAGAGTGAGAAGGAAT+AGG | 0.402611 | 8_2:+59068575 | Msa1258000:five_prime_UTR |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8_2:+59069579 | Msa1258000:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8_2:+59070999 | Msa1258000:CDS |
| TAGGAGAGTTTGGTAAGAGT+GGG | 0.425429 | 8_2:+59068594 | Msa1258000:five_prime_UTR |
| ATCTTTCATGAGCGTGCATA+AGG | 0.426731 | 8_2:-59071543 | None:intergenic |
| TTCTTAAAGCAGAAAGATAA+GGG | 0.434943 | 8_2:+59071070 | Msa1258000:exon |
| TGCTTTGCTTGAAGAAAAGA+AGG | 0.436855 | 8_2:+59071299 | Msa1258000:three_prime_UTR |
| ATCCATAGTAGGTTGTGAAA+AGG | 0.442398 | 8_2:+59071346 | Msa1258000:three_prime_UTR |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8_2:+59070917 | Msa1258000:CDS |
| AGGGAGGAACAATTTGGATT+GGG | 0.445622 | 8_2:+59071417 | Msa1258000:three_prime_UTR |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8_2:+59070254 | Msa1258000:CDS |
| AATAGGTTGTTATCCATAGT+AGG | 0.455518 | 8_2:+59071335 | Msa1258000:three_prime_UTR |
| GTTCTTAAAGCAGAAAGATA+AGG | 0.456386 | 8_2:+59071069 | Msa1258000:exon |
| ATCAAGGCGAGGATTGCGTT+TGG | 0.457398 | 8_2:+59068526 | Msa1258000:five_prime_UTR |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8_2:+59069885 | Msa1258000:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8_2:+59069565 | Msa1258000:CDS |
| GATTGGATTCATTTGGTATG+TGG | 0.463686 | 8_2:+59071227 | Msa1258000:three_prime_UTR |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8_2:+59070245 | Msa1258000:CDS |
| GAGGGAGGAACAATTTGGAT+TGG | 0.467021 | 8_2:+59071416 | Msa1258000:three_prime_UTR |
| CATAACTACCACCGGAGACT+TGG | 0.467944 | 8_2:+59070812 | Msa1258000:CDS |
| GTGGCACAGAAAGGAAGATT+AGG | 0.467978 | 8_2:+59071391 | Msa1258000:three_prime_UTR |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8_2:-59070002 | None:intergenic |
| ATAGGAGAGTTTGGTAAGAG+TGG | 0.469805 | 8_2:+59068593 | Msa1258000:five_prime_UTR |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8_2:-59070779 | None:intergenic |
| CAGAAAGGAAGATTAGGTAG+AGG | 0.477546 | 8_2:+59071397 | Msa1258000:three_prime_UTR |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8_2:-59069366 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8_2:+59069876 | Msa1258000:CDS |
| TCCATAGTAGGTTGTGAAAA+GGG | 0.484251 | 8_2:+59071347 | Msa1258000:three_prime_UTR |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8_2:+59070531 | Msa1258000:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8_2:+59070978 | Msa1258000:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8_2:+59070846 | Msa1258000:CDS |
| ACTAACTCTTACGTAAATTG+TGG | 0.491534 | 8_2:+59071629 | Msa1258000:three_prime_UTR |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8_2:+59069968 | Msa1258000:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8_2:-59070823 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8_2:+59070253 | Msa1258000:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8_2:-59070862 | None:intergenic |
| ATCAAGCTACTAAGATAAGA+TGG | 0.502245 | 8_2:+59068814 | Msa1258000:exon |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8_2:+59069572 | Msa1258000:CDS |
| CTAACTCTTACGTAAATTGT+GGG | 0.509075 | 8_2:+59071630 | Msa1258000:three_prime_UTR |
| TGAGAACATTCCGAGAGAAC+GGG | 0.510017 | 8_2:+59070769 | Msa1258000:CDS |
| GTACCGCATCGAGATCCAAT+AGG | 0.510161 | 8_2:+59071592 | Msa1258000:three_prime_UTR |
| GAGAGTGGGAAGATAGAGAA+AGG | 0.510802 | 8_2:+59068551 | Msa1258000:five_prime_UTR |
| AAGAGGGAGAGTTAAGATCA+AGG | 0.511157 | 8_2:+59068510 | None:intergenic |
| ATGCATTAAAAGCCACCGCT+TGG | 0.514841 | 8_2:+59068646 | Msa1258000:five_prime_UTR |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8_2:+59069373 | Msa1258000:CDS |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | 8_2:-59070550 | None:intergenic |
| ATGAGAACATTCCGAGAGAA+CGG | 0.522763 | 8_2:+59070768 | Msa1258000:CDS |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8_2:+59070975 | Msa1258000:CDS |
| AGCACAGCTTCCTGAAACGA+CGG | 0.523884 | 8_2:-59068744 | None:intergenic |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8_2:-59071025 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8_2:+59069490 | Msa1258000:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8_2:+59069915 | Msa1258000:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8_2:-59070533 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8_2:+59070284 | Msa1258000:CDS |
| AGAGGGTCCATCCCTCCAGC+TGG | 0.533239 | 8_2:-59071264 | None:intergenic |
| CCTTTATCCAGCTGGAGGGA+TGG | 0.539543 | 8_2:+59071257 | Msa1258000:three_prime_UTR |
| GAAAATGACCTTTATCCAGC+TGG | 0.541468 | 8_2:+59071249 | Msa1258000:three_prime_UTR |
| AAAGGACAGAGAGAGTGAGA+AGG | 0.542628 | 8_2:+59068569 | Msa1258000:five_prime_UTR |
| GTCTCCGGTGGTAGTTATGT+CGG | 0.542647 | 8_2:-59070808 | None:intergenic |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8_2:+59070969 | Msa1258000:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8_2:+59070151 | Msa1258000:CDS |
| GATTCTTTGGTGGCACAGAA+AGG | 0.549018 | 8_2:+59071382 | Msa1258000:three_prime_UTR |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8_2:+59068832 | Msa1258000:exon |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8_2:+59070979 | Msa1258000:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8_2:-59069893 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | 8_2:+59070386 | Msa1258000:CDS |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8_2:+59070035 | Msa1258000:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8_2:+59070224 | Msa1258000:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8_2:+59070022 | Msa1258000:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8_2:-59069953 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8_2:+59068819 | Msa1258000:exon |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | 8_2:-59070395 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8_2:-59070243 | None:intergenic |
| TGTAGAATATGATTCTTTGG+TGG | 0.574287 | 8_2:+59071372 | Msa1258000:three_prime_UTR |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8_2:-59070139 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8_2:+59070953 | Msa1258000:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8_2:+59070952 | Msa1258000:CDS |
| CGTAAGAGTTAGTATTTGCG+TGG | 0.584328 | 8_2:-59071619 | None:intergenic |
| AGAAAGGAAGATTAGGTAGA+GGG | 0.587395 | 8_2:+59071398 | Msa1258000:three_prime_UTR |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8_2:+59070980 | Msa1258000:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8_2:+59071015 | Msa1258000:CDS |
| TAATAATCTTCAATAATCCT+CGG | 0.593923 | 8_2:-59068792 | None:intergenic |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8_2:+59069957 | Msa1258000:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8_2:+59069886 | Msa1258000:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8_2:-59070010 | None:intergenic |
| TTACTAGAAATTCCAAGCGG+TGG | 0.604680 | 8_2:-59068658 | None:intergenic |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8_2:-59070368 | None:intergenic |
| GATTGCGTTTGGAAGAGAGT+GGG | 0.607067 | 8_2:+59068537 | Msa1258000:five_prime_UTR |
| GCAGAAAGATAAGGGCGTGA+GGG | 0.608985 | 8_2:+59071078 | Msa1258000:three_prime_UTR |
| AAAGCACATTTAAAATGGAG+AGG | 0.609825 | 8_2:-59071282 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8_2:+59069841 | Msa1258000:CDS |
| GAATCTTTCTATGTATAGAA+GGG | 0.611652 | 8_2:-59068684 | None:intergenic |
| CAAAGCCCAAACTTGAAGCA+AGG | 0.617938 | 8_2:-59071149 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8_2:-59070176 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8_2:-59070197 | None:intergenic |
| AAGCACATTTAAAATGGAGA+GGG | 0.627278 | 8_2:-59071281 | None:intergenic |
| AGCAGAAAGATAAGGGCGTG+AGG | 0.630544 | 8_2:+59071077 | Msa1258000:three_prime_UTR |
| AAGGAAGATTAGGTAGAGGG+AGG | 0.632537 | 8_2:+59071401 | Msa1258000:three_prime_UTR |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8_2:+59069901 | Msa1258000:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8_2:+59070332 | Msa1258000:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8_2:+59069954 | Msa1258000:CDS |
| CTATGCACTGAAGACAGACA+AGG | 0.636939 | 8_2:+59070729 | Msa1258000:CDS |
| AATGACCTTTATCCAGCTGG+AGG | 0.638358 | 8_2:+59071252 | Msa1258000:three_prime_UTR |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8_2:+59069951 | Msa1258000:CDS |
| CGTGCCGACATAACTACCAC+CGG | 0.642054 | 8_2:+59070804 | Msa1258000:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8_2:+59070367 | Msa1258000:CDS |
| GGATTGCGTTTGGAAGAGAG+TGG | 0.648149 | 8_2:+59068536 | Msa1258000:five_prime_UTR |
| CAGACAAGGGCTTCTCGCCG+AGG | 0.655196 | 8_2:+59070743 | Msa1258000:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8_2:+59070255 | Msa1258000:CDS |
| ATGACCTTTATCCAGCTGGA+GGG | 0.662517 | 8_2:+59071253 | Msa1258000:three_prime_UTR |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | 8_2:-59070558 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8_2:+59069583 | Msa1258000:CDS |
| TCGGAATGTTCTCATCACCT+CGG | 0.665865 | 8_2:-59070760 | None:intergenic |
| GGAGAGTTAAGATCAAGGCG+AGG | 0.672892 | 8_2:+59068515 | None:intergenic |
| TAATCTTCAATAATCCTCGG+TGG | 0.688570 | 8_2:-59068789 | None:intergenic |
| ATTTGCAGCCAAGTCTCCGG+TGG | 0.688653 | 8_2:-59070820 | None:intergenic |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8_2:+59069979 | Msa1258000:CDS |
| CATCCTATTGGATCTCGATG+CGG | 0.697688 | 8_2:-59071595 | None:intergenic |
| TATGCACTGAAGACAGACAA+GGG | 0.701710 | 8_2:+59070730 | Msa1258000:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8_2:+59070588 | Msa1258000:CDS |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8_2:+59070368 | Msa1258000:CDS |
| AAGTTACTAGAAATTCCAAG+CGG | 0.792461 | 8_2:-59068661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | - | chr8_2:59069288-59069307 | None:intergenic | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | - | chr8_2:59070473-59070492 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | + | chr8_2:59070483-59070502 | Msa1258000:intron | 10.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | + | chr8_2:59068971-59068990 | Msa1258000:intron | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | - | chr8_2:59069262-59069281 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | + | chr8_2:59069407-59069426 | Msa1258000:intron | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | + | chr8_2:59069408-59069427 | Msa1258000:intron | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | - | chr8_2:59069661-59069680 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | - | chr8_2:59069662-59069681 | None:intergenic | 15.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | - | chr8_2:59069809-59069828 | None:intergenic | 15.0% |
| !!! | ATAATGCAATGTTTTTTTTT+TGG | + | chr8_2:59070429-59070448 | Msa1258000:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | - | chr8_2:59070666-59070685 | None:intergenic | 15.0% |
| !! | TGTACATATTAAAAAAGTAA+AGG | + | chr8_2:59071172-59071191 | Msa1258000:three_prime_UTR | 15.0% |
| !! | GTACATATTAAAAAAGTAAA+GGG | + | chr8_2:59071173-59071192 | Msa1258000:three_prime_UTR | 15.0% |
| !! | TAATAATCTTCAATAATCCT+CGG | - | chr8_2:59068795-59068814 | None:intergenic | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | - | chr8_2:59069018-59069037 | None:intergenic | 20.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | + | chr8_2:59069066-59069085 | Msa1258000:intron | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | - | chr8_2:59069555-59069574 | None:intergenic | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | + | chr8_2:59069612-59069631 | Msa1258000:intron | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | + | chr8_2:59069732-59069751 | Msa1258000:CDS | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | + | chr8_2:59070917-59070936 | Msa1258000:CDS | 20.0% |
| ! | GAATCTTTCTATGTATAGAA+GGG | - | chr8_2:59068687-59068706 | None:intergenic | 25.0% |
| ! | TGAATCTTTCTATGTATAGA+AGG | - | chr8_2:59068688-59068707 | None:intergenic | 25.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | - | chr8_2:59068909-59068928 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | - | chr8_2:59068966-59068985 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | - | chr8_2:59069057-59069076 | None:intergenic | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | - | chr8_2:59069058-59069077 | None:intergenic | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | + | chr8_2:59069065-59069084 | Msa1258000:intron | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | - | chr8_2:59069072-59069091 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | - | chr8_2:59069259-59069278 | None:intergenic | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | + | chr8_2:59069327-59069346 | Msa1258000:intron | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | + | chr8_2:59069328-59069347 | Msa1258000:intron | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | - | chr8_2:59069369-59069388 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | - | chr8_2:59069418-59069437 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | - | chr8_2:59069701-59069720 | None:intergenic | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | + | chr8_2:59069741-59069760 | Msa1258000:intron | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | + | chr8_2:59069862-59069881 | Msa1258000:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | - | chr8_2:59070013-59070032 | None:intergenic | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | - | chr8_2:59070016-59070035 | None:intergenic | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | + | chr8_2:59070055-59070074 | Msa1258000:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | + | chr8_2:59070087-59070106 | Msa1258000:CDS | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | - | chr8_2:59070219-59070238 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | + | chr8_2:59070508-59070527 | Msa1258000:CDS | 25.0% |
| ! | ATTGTTAATTTCTTGAATGC+AGG | + | chr8_2:59070692-59070711 | Msa1258000:intron | 25.0% |
| ! | TTGTTAATTTCTTGAATGCA+GGG | + | chr8_2:59070693-59070712 | Msa1258000:intron | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | + | chr8_2:59070895-59070914 | Msa1258000:CDS | 25.0% |
| ! | TTCTTAAAGCAGAAAGATAA+GGG | + | chr8_2:59071070-59071089 | Msa1258000:exon | 25.0% |
| !!! | AGTTGTTTTTTTTCTTCACT+TGG | + | chr8_2:59071201-59071220 | Msa1258000:three_prime_UTR | 25.0% |
| !! | AAGGATTTGCATTTTGTAAT+AGG | + | chr8_2:59071318-59071337 | Msa1258000:three_prime_UTR | 25.0% |
| ! | GAATGTAGAATATGATTCTT+TGG | + | chr8_2:59071369-59071388 | Msa1258000:three_prime_UTR | 25.0% |
| ! | TTTTATGACGATTTGATCGA+AGG | + | chr8_2:59068617-59068636 | Msa1258000:five_prime_UTR | 30.0% |
| AAGTTACTAGAAATTCCAAG+CGG | - | chr8_2:59068664-59068683 | None:intergenic | 30.0% | |
| ! | TACTTTAAAAAAAACCACCG+AGG | + | chr8_2:59068775-59068794 | Msa1258000:five_prime_UTR | 30.0% |
| ATCAAGCTACTAAGATAAGA+TGG | + | chr8_2:59068814-59068833 | Msa1258000:exon | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | - | chr8_2:59069005-59069024 | None:intergenic | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | + | chr8_2:59069111-59069130 | Msa1258000:intron | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | - | chr8_2:59069139-59069158 | None:intergenic | 30.0% | |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | - | chr8_2:59069251-59069270 | None:intergenic | 30.0% |
| TTCCAATTCAACTATAGTCA+AGG | + | chr8_2:59069373-59069392 | Msa1258000:CDS | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | - | chr8_2:59069378-59069397 | None:intergenic | 30.0% | |
| AAAGCATATGTTTCATCTGA+TGG | + | chr8_2:59069565-59069584 | Msa1258000:CDS | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | + | chr8_2:59069688-59069707 | Msa1258000:CDS | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | + | chr8_2:59069841-59069860 | Msa1258000:CDS | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | + | chr8_2:59070103-59070122 | Msa1258000:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | - | chr8_2:59070200-59070219 | None:intergenic | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | + | chr8_2:59070504-59070523 | Msa1258000:intron | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | - | chr8_2:59070884-59070903 | None:intergenic | 30.0% |
| GAATCAGTTCGTCAAAAAAT+TGG | + | chr8_2:59070894-59070913 | Msa1258000:CDS | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | + | chr8_2:59071032-59071051 | Msa1258000:CDS | 30.0% | |
| GTTCTTAAAGCAGAAAGATA+AGG | + | chr8_2:59071069-59071088 | Msa1258000:exon | 30.0% | |
| ! | ATTATTCCTTGCTTCAAGTT+TGG | + | chr8_2:59071143-59071162 | Msa1258000:three_prime_UTR | 30.0% |
| ! | TTATTCCTTGCTTCAAGTTT+GGG | + | chr8_2:59071144-59071163 | Msa1258000:three_prime_UTR | 30.0% |
| !!! | GTTTTTTTTCTTCACTTGGT+TGG | + | chr8_2:59071205-59071224 | Msa1258000:three_prime_UTR | 30.0% |
| ! | AAGCACATTTAAAATGGAGA+GGG | - | chr8_2:59071284-59071303 | None:intergenic | 30.0% |
| ! | AAAGCACATTTAAAATGGAG+AGG | - | chr8_2:59071285-59071304 | None:intergenic | 30.0% |
| CAAGCAAAGCACATTTAAAA+TGG | - | chr8_2:59071290-59071309 | None:intergenic | 30.0% | |
| AATAGGTTGTTATCCATAGT+AGG | + | chr8_2:59071335-59071354 | Msa1258000:three_prime_UTR | 30.0% | |
| TGTAGAATATGATTCTTTGG+TGG | + | chr8_2:59071372-59071391 | Msa1258000:three_prime_UTR | 30.0% | |
| !!! | TGAAAGATTGCTGTGTTTTT+TGG | + | chr8_2:59071558-59071577 | Msa1258000:three_prime_UTR | 30.0% |
| ACTAACTCTTACGTAAATTG+TGG | + | chr8_2:59071629-59071648 | Msa1258000:three_prime_UTR | 30.0% | |
| CTAACTCTTACGTAAATTGT+GGG | + | chr8_2:59071630-59071649 | Msa1258000:three_prime_UTR | 30.0% | |
| TAATCTTCAATAATCCTCGG+TGG | - | chr8_2:59068792-59068811 | None:intergenic | 35.0% | |
| GCTACTAAGATAAGATGGAA+TGG | + | chr8_2:59068819-59068838 | Msa1258000:exon | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | - | chr8_2:59069503-59069522 | None:intergenic | 35.0% | |
| !! | CAGAAAGCATGGAATTCTTT+TGG | + | chr8_2:59069501-59069520 | Msa1258000:CDS | 35.0% |
| ATGTTTCATCTGATGGAAGA+TGG | + | chr8_2:59069572-59069591 | Msa1258000:CDS | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | - | chr8_2:59070005-59070024 | None:intergenic | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | + | chr8_2:59070021-59070040 | Msa1258000:CDS | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | + | chr8_2:59070022-59070041 | Msa1258000:CDS | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | - | chr8_2:59070142-59070161 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | + | chr8_2:59070151-59070170 | Msa1258000:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | + | chr8_2:59070284-59070303 | Msa1258000:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | + | chr8_2:59070332-59070351 | Msa1258000:CDS | 35.0% | |
| AAGTAACTACCATGTATGCT+TGG | - | chr8_2:59070398-59070417 | None:intergenic | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | - | chr8_2:59070948-59070967 | None:intergenic | 35.0% |
| AAGTCATCAAAAGGTAGAGA+GGG | + | chr8_2:59070953-59070972 | Msa1258000:CDS | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | + | chr8_2:59071031-59071050 | Msa1258000:CDS | 35.0% | |
| ! | TTTTCTTCACTTGGTTGGAT+TGG | + | chr8_2:59071210-59071229 | Msa1258000:three_prime_UTR | 35.0% |
| ! | TTGGTTGGATTGGATTCATT+TGG | + | chr8_2:59071220-59071239 | Msa1258000:three_prime_UTR | 35.0% |
| GATTGGATTCATTTGGTATG+TGG | + | chr8_2:59071227-59071246 | Msa1258000:three_prime_UTR | 35.0% | |
| TGCTTTGCTTGAAGAAAAGA+AGG | + | chr8_2:59071299-59071318 | Msa1258000:three_prime_UTR | 35.0% | |
| ATCCATAGTAGGTTGTGAAA+AGG | + | chr8_2:59071346-59071365 | Msa1258000:three_prime_UTR | 35.0% | |
| TCCATAGTAGGTTGTGAAAA+GGG | + | chr8_2:59071347-59071366 | Msa1258000:three_prime_UTR | 35.0% | |
| AGAAAGGAAGATTAGGTAGA+GGG | + | chr8_2:59071398-59071417 | Msa1258000:three_prime_UTR | 35.0% | |
| TGAGAAGGAATAGGAGAGTT+TGG | + | chr8_2:59068584-59068603 | Msa1258000:five_prime_UTR | 40.0% | |
| ATAGGAGAGTTTGGTAAGAG+TGG | + | chr8_2:59068593-59068612 | Msa1258000:five_prime_UTR | 40.0% | |
| TAGGAGAGTTTGGTAAGAGT+GGG | + | chr8_2:59068594-59068613 | Msa1258000:five_prime_UTR | 40.0% | |
| TTACTAGAAATTCCAAGCGG+TGG | - | chr8_2:59068661-59068680 | None:intergenic | 40.0% | |
| GATGGAATGGTCTTCATGTA+CGG | + | chr8_2:59068832-59068851 | Msa1258000:exon | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | - | chr8_2:59069051-59069070 | None:intergenic | 40.0% | |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | + | chr8_2:59069490-59069509 | Msa1258000:CDS | 40.0% |
| ATCTGATGGAAGATGGTTCA+TGG | + | chr8_2:59069579-59069598 | Msa1258000:CDS | 40.0% | |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | + | chr8_2:59069930-59069949 | Msa1258000:CDS | 40.0% |
| GCTAAAGTATGGACTCACAA+TGG | + | chr8_2:59069979-59069998 | Msa1258000:CDS | 40.0% | |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | + | chr8_2:59070224-59070243 | Msa1258000:CDS | 40.0% |
| CAATTCTGTACAGTCACTAC+CGG | - | chr8_2:59070246-59070265 | None:intergenic | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | + | chr8_2:59070245-59070264 | Msa1258000:CDS | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | + | chr8_2:59070254-59070273 | Msa1258000:CDS | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | + | chr8_2:59070367-59070386 | Msa1258000:CDS | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | + | chr8_2:59070368-59070387 | Msa1258000:CDS | 40.0% | |
| AACCCCAATTAGTTCAGAAC+CGG | + | chr8_2:59070531-59070550 | Msa1258000:CDS | 40.0% | |
| ! | TTTCTTGAATGCAGGGTGTT+AGG | + | chr8_2:59070700-59070719 | Msa1258000:intron | 40.0% |
| TATGCACTGAAGACAGACAA+GGG | + | chr8_2:59070730-59070749 | Msa1258000:CDS | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | + | chr8_2:59070768-59070787 | Msa1258000:CDS | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | - | chr8_2:59070782-59070801 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | + | chr8_2:59070846-59070865 | Msa1258000:CDS | 40.0% | |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | - | chr8_2:59070875-59070894 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | - | chr8_2:59070876-59070895 | None:intergenic | 40.0% |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | + | chr8_2:59070944-59070963 | Msa1258000:CDS | 40.0% |
| CAAGTCATCAAAAGGTAGAG+AGG | + | chr8_2:59070952-59070971 | Msa1258000:CDS | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | + | chr8_2:59070975-59070994 | Msa1258000:CDS | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | + | chr8_2:59070979-59070998 | Msa1258000:CDS | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | - | chr8_2:59071028-59071047 | None:intergenic | 40.0% | |
| !!! | GTGAGGGAATTTTTTGAGTG+TGG | + | chr8_2:59071094-59071113 | Msa1258000:three_prime_UTR | 40.0% |
| GAAAATGACCTTTATCCAGC+TGG | + | chr8_2:59071249-59071268 | Msa1258000:three_prime_UTR | 40.0% | |
| ! | TCCCTTTTCACAACCTACTA+TGG | - | chr8_2:59071351-59071370 | None:intergenic | 40.0% |
| CAGAAAGGAAGATTAGGTAG+AGG | + | chr8_2:59071397-59071416 | Msa1258000:three_prime_UTR | 40.0% | |
| AGGGAGGAACAATTTGGATT+GGG | + | chr8_2:59071417-59071436 | Msa1258000:three_prime_UTR | 40.0% | |
| ATCTTTCATGAGCGTGCATA+AGG | - | chr8_2:59071546-59071565 | None:intergenic | 40.0% | |
| TATTTGCGTGGACATCCTAT+TGG | - | chr8_2:59071610-59071629 | None:intergenic | 40.0% | |
| CGTAAGAGTTAGTATTTGCG+TGG | - | chr8_2:59071622-59071641 | None:intergenic | 40.0% | |
| GATTGCGTTTGGAAGAGAGT+GGG | + | chr8_2:59068537-59068556 | Msa1258000:five_prime_UTR | 45.0% | |
| GAGAGTGGGAAGATAGAGAA+AGG | + | chr8_2:59068551-59068570 | Msa1258000:five_prime_UTR | 45.0% | |
| AAAGGACAGAGAGAGTGAGA+AGG | + | chr8_2:59068569-59068588 | Msa1258000:five_prime_UTR | 45.0% | |
| CAGAGAGAGTGAGAAGGAAT+AGG | + | chr8_2:59068575-59068594 | Msa1258000:five_prime_UTR | 45.0% | |
| ATGCATTAAAAGCCACCGCT+TGG | + | chr8_2:59068646-59068665 | Msa1258000:five_prime_UTR | 45.0% | |
| TGTCTCATAACCGTCGTTTC+AGG | + | chr8_2:59068734-59068753 | Msa1258000:five_prime_UTR | 45.0% | |
| ! | TTTTTCGCATGAGCACTCCT+AGG | + | chr8_2:59068873-59068892 | Msa1258000:CDS | 45.0% |
| AAGAAGGAAGACACGAACCT+AGG | - | chr8_2:59068893-59068912 | None:intergenic | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | - | chr8_2:59069149-59069168 | None:intergenic | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | + | chr8_2:59069583-59069602 | Msa1258000:CDS | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | + | chr8_2:59069876-59069895 | Msa1258000:CDS | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | + | chr8_2:59069885-59069904 | Msa1258000:CDS | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | + | chr8_2:59069886-59069905 | Msa1258000:CDS | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | - | chr8_2:59069896-59069915 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | + | chr8_2:59069968-59069987 | Msa1258000:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | + | chr8_2:59070035-59070054 | Msa1258000:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | - | chr8_2:59070165-59070184 | None:intergenic | 45.0% |
| GGTCTGCAAACATCATTTGG+TGG | - | chr8_2:59070179-59070198 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | - | chr8_2:59070182-59070201 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | + | chr8_2:59070244-59070263 | Msa1258000:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | + | chr8_2:59070253-59070272 | Msa1258000:CDS | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | + | chr8_2:59070255-59070274 | Msa1258000:CDS | 45.0% | |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | - | chr8_2:59070371-59070390 | None:intergenic | 45.0% |
| AAGGGTTGACCAAGCATACA+TGG | + | chr8_2:59070386-59070405 | Msa1258000:CDS | 45.0% | |
| !! | CTCCGGTTCTGAACTAATTG+GGG | - | chr8_2:59070536-59070555 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | - | chr8_2:59070537-59070556 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | - | chr8_2:59070561-59070580 | None:intergenic | 45.0% |
| AGTAGAGAGAAGATCATGCG+AGG | + | chr8_2:59070588-59070607 | Msa1258000:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | + | chr8_2:59070593-59070612 | Msa1258000:intron | 45.0% | |
| CTATGCACTGAAGACAGACA+AGG | + | chr8_2:59070729-59070748 | Msa1258000:CDS | 45.0% | |
| TCGGAATGTTCTCATCACCT+CGG | - | chr8_2:59070763-59070782 | None:intergenic | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | + | chr8_2:59070769-59070788 | Msa1258000:CDS | 45.0% | |
| AACATTTGCAGCCAAGTCTC+CGG | - | chr8_2:59070826-59070845 | None:intergenic | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | + | chr8_2:59070969-59070988 | Msa1258000:CDS | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | + | chr8_2:59070978-59070997 | Msa1258000:CDS | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | + | chr8_2:59070980-59070999 | Msa1258000:CDS | 45.0% | |
| CAAAGCCCAAACTTGAAGCA+AGG | - | chr8_2:59071152-59071171 | None:intergenic | 45.0% | |
| AATGACCTTTATCCAGCTGG+AGG | + | chr8_2:59071252-59071271 | Msa1258000:three_prime_UTR | 45.0% | |
| ATGACCTTTATCCAGCTGGA+GGG | + | chr8_2:59071253-59071272 | Msa1258000:three_prime_UTR | 45.0% | |
| ! | GATTCTTTGGTGGCACAGAA+AGG | + | chr8_2:59071382-59071401 | Msa1258000:three_prime_UTR | 45.0% |
| GTGGCACAGAAAGGAAGATT+AGG | + | chr8_2:59071391-59071410 | Msa1258000:three_prime_UTR | 45.0% | |
| AAGGAAGATTAGGTAGAGGG+AGG | + | chr8_2:59071401-59071420 | Msa1258000:three_prime_UTR | 45.0% | |
| AGGTAGAGGGAGGAACAATT+TGG | + | chr8_2:59071411-59071430 | Msa1258000:three_prime_UTR | 45.0% | |
| GAGGGAGGAACAATTTGGAT+TGG | + | chr8_2:59071416-59071435 | Msa1258000:three_prime_UTR | 45.0% | |
| CATCCTATTGGATCTCGATG+CGG | - | chr8_2:59071598-59071617 | None:intergenic | 45.0% | |
| !! | TTTAAATTAATTAAAATTTG+AGG | - | chr8_2:59069167-59069186 | None:intergenic | 5.0% |
| ATCAAGGCGAGGATTGCGTT+TGG | + | chr8_2:59068526-59068545 | Msa1258000:five_prime_UTR | 50.0% | |
| GGATTGCGTTTGGAAGAGAG+TGG | + | chr8_2:59068536-59068555 | Msa1258000:five_prime_UTR | 50.0% | |
| AGCACAGCTTCCTGAAACGA+CGG | - | chr8_2:59068747-59068766 | None:intergenic | 50.0% | |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | + | chr8_2:59069915-59069934 | Msa1258000:CDS | 50.0% |
| CACCACATCACATTGCAGCT+CGG | - | chr8_2:59069956-59069975 | None:intergenic | 50.0% | |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | - | chr8_2:59070538-59070557 | None:intergenic | 50.0% |
| GTCTCCGGTGGTAGTTATGT+CGG | - | chr8_2:59070811-59070830 | None:intergenic | 50.0% | |
| CATAACTACCACCGGAGACT+TGG | + | chr8_2:59070812-59070831 | Msa1258000:CDS | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | - | chr8_2:59070865-59070884 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | + | chr8_2:59070999-59071018 | Msa1258000:CDS | 50.0% |
| CTCTTGGAAGCCTAGTGAGA+AGG | + | chr8_2:59071015-59071034 | Msa1258000:CDS | 50.0% | |
| ! | AGCAGAAAGATAAGGGCGTG+AGG | + | chr8_2:59071077-59071096 | Msa1258000:three_prime_UTR | 50.0% |
| ! | GCAGAAAGATAAGGGCGTGA+GGG | + | chr8_2:59071078-59071097 | Msa1258000:three_prime_UTR | 50.0% |
| GTACCGCATCGAGATCCAAT+AGG | + | chr8_2:59071592-59071611 | Msa1258000:three_prime_UTR | 50.0% | |
| ! | TTGAAGGGCACAGATCGCGT+TGG | + | chr8_2:59069901-59069920 | Msa1258000:CDS | 55.0% |
| CGAGCTGCAATGTGATGTGG+TGG | + | chr8_2:59069954-59069973 | Msa1258000:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | + | chr8_2:59069957-59069976 | Msa1258000:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | - | chr8_2:59070553-59070572 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACCAC+CGG | + | chr8_2:59070804-59070823 | Msa1258000:CDS | 55.0% |
| ATTTGCAGCCAAGTCTCCGG+TGG | - | chr8_2:59070823-59070842 | None:intergenic | 55.0% | |
| CCATCCCTCCAGCTGGATAA+AGG | - | chr8_2:59071260-59071279 | None:intergenic | 55.0% | |
| CCTTTATCCAGCTGGAGGGA+TGG | + | chr8_2:59071257-59071276 | Msa1258000:three_prime_UTR | 55.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | + | chr8_2:59069951-59069970 | Msa1258000:CDS | 60.0% | |
| CAGACAAGGGCTTCTCGCCG+AGG | + | chr8_2:59070743-59070762 | Msa1258000:CDS | 65.0% | |
| AGAGGGTCCATCCCTCCAGC+TGG | - | chr8_2:59071267-59071286 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 59068518 | 59071669 | 59068518 | ID=Msa1258000;Name=Msa1258000 |
| chr8_2 | mRNA | 59068518 | 59071669 | 59068518 | ID=Msa1258000-mRNA-1;Parent=Msa1258000;Name=Msa1258000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=315|1|1|1|1|1|7|593|441 |
| chr8_2 | exon | 59068518 | 59068894 | 59068518 | ID=Msa1258000-mRNA-1:exon:18260;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59069349 | 59069394 | 59069349 | ID=Msa1258000-mRNA-1:exon:18261;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59069490 | 59069604 | 59069490 | ID=Msa1258000-mRNA-1:exon:18262;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59069686 | 59069753 | 59069686 | ID=Msa1258000-mRNA-1:exon:18263;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59069841 | 59070407 | 59069841 | ID=Msa1258000-mRNA-1:exon:18264;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59070505 | 59070609 | 59070505 | ID=Msa1258000-mRNA-1:exon:18265;Parent=Msa1258000-mRNA-1 |
| chr8_2 | exon | 59070714 | 59071669 | 59070714 | ID=Msa1258000-mRNA-1:exon:18266;Parent=Msa1258000-mRNA-1 |
| chr8_2 | five_prime_UTR | 59068518 | 59068832 | 59068518 | ID=Msa1258000-mRNA-1:five_prime_utr;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59068833 | 59068894 | 59068833 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59069349 | 59069394 | 59069349 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59069490 | 59069604 | 59069490 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59069686 | 59069753 | 59069686 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59069841 | 59070407 | 59069841 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59070505 | 59070609 | 59070505 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | CDS | 59070714 | 59071076 | 59070714 | ID=Msa1258000-mRNA-1:cds;Parent=Msa1258000-mRNA-1 |
| chr8_2 | three_prime_UTR | 59071077 | 59071669 | 59071077 | ID=Msa1258000-mRNA-1:three_prime_utr;Parent=Msa1258000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
