AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077560 MtrunA17_Chr1g0187411 98.806 754 9 0 1 754 73 826 0.0 1541
Msa0077560 MtrunA17_Chr4g0049011 31.892 370 199 13 59 401 280 623 6.63e-34 138
Msa0077560 MtrunA17_Chr1g0182151 29.673 428 226 18 18 400 4 401 1.78e-33 138
Msa0077560 MtrunA17_Chr7g0266631 31.429 385 187 15 59 400 10 360 2.46e-32 134
Msa0077560 MtrunA17_Chr5g0411971 28.063 506 281 20 65 533 421 880 4.40e-32 134
Msa0077560 MtrunA17_Chr2g0312631 31.476 359 184 12 67 409 408 720 7.38e-32 133
Msa0077560 MtrunA17_Chr1g0192481 32.602 319 178 8 124 430 125 418 9.80e-32 131
Msa0077560 MtrunA17_Chr5g0421521 28.431 510 274 22 65 533 396 855 4.31e-31 130
Msa0077560 MtrunA17_Chr1g0178411 31.169 385 188 14 59 400 14 364 5.37e-31 130
Msa0077560 MtrunA17_Chr5g0421591 28.627 510 273 23 65 533 396 855 2.41e-30 128
Msa0077560 MtrunA17_Chr4g0042061 29.942 344 207 12 83 412 463 786 5.03e-30 127
Msa0077560 MtrunA17_Chr1g0195111 29.156 391 232 12 26 399 364 726 1.03e-29 126
Msa0077560 MtrunA17_Chr2g0280421 32.110 327 179 12 99 409 483 782 2.64e-28 121
Msa0077560 MtrunA17_Chr2g0327581 30.184 381 210 11 97 448 94 447 4.16e-28 121
Msa0077560 MtrunA17_Chr7g0271961 29.396 364 205 10 95 444 444 769 4.53e-28 121
Msa0077560 MtrunA17_Chr3g0102921 31.366 322 179 12 103 406 491 788 3.89e-27 118
Msa0077560 MtrunA17_Chr7g0257301 31.803 305 162 9 124 399 459 746 6.14e-27 117
Msa0077560 MtrunA17_Chr7g0238581 25.424 413 234 12 48 424 5 379 2.84e-26 114
Msa0077560 MtrunA17_Chr7g0272871 29.855 345 185 14 76 400 148 455 5.79e-26 114
Msa0077560 MtrunA17_Chr5g0407791 28.239 301 161 10 117 400 952 1214 5.80e-26 114
Msa0077560 MtrunA17_Chr2g0319271 28.228 333 207 10 83 400 430 745 1.69e-25 112
Msa0077560 MtrunA17_Chr5g0427481 29.429 333 185 10 91 396 48 357 4.24e-25 112
Msa0077560 MtrunA17_Chr3g0132921 26.596 470 248 17 91 529 40 443 7.64e-25 109
Msa0077560 MtrunA17_Chr4g0062291 27.244 312 184 9 97 396 174 454 2.01e-24 108
Msa0077560 MtrunA17_Chr1g0153061 28.947 380 182 13 91 418 39 382 2.05e-24 109
Msa0077560 MtrunA17_Chr1g0191851 29.483 329 178 12 90 400 183 475 2.09e-24 109
Msa0077560 MtrunA17_Chr3g0134191 27.824 363 208 10 91 418 39 382 2.31e-24 109
Msa0077560 MtrunA17_Chr8g0369881 27.703 296 177 9 117 404 938 1204 3.09e-24 109
Msa0077560 MtrunA17_Chr1g0191181 28.125 352 212 9 59 396 89 413 4.15e-24 107
Msa0077560 MtrunA17_Chr5g0447041 28.313 332 180 10 119 406 496 813 8.78e-24 107
Msa0077560 MtrunA17_Chr4g0045381 27.887 459 226 19 27 430 154 562 9.02e-24 108
Msa0077560 MtrunA17_Chr2g0307481 27.245 323 186 9 88 396 109 396 2.36e-23 105
Msa0077560 MtrunA17_Chr6g0485471 28.704 324 163 9 98 399 164 441 5.04e-23 104
Msa0077560 MtrunA17_Chr8g0377731 26.988 415 226 16 20 396 15 390 5.16e-23 105
Msa0077560 MtrunA17_Chr2g0331761 27.988 343 188 10 78 399 207 511 1.13e-22 103
Msa0077560 MtrunA17_Chr2g0322291 29.293 396 202 16 56 414 86 440 1.42e-22 103
Msa0077560 MtrunA17_Chr4g0053211 26.761 355 193 11 91 400 43 375 2.74e-22 102
Msa0077560 MtrunA17_Chr5g0398521 29.221 308 175 10 106 393 113 397 4.02e-22 102
Msa0077560 MtrunA17_Chr1g0152231 27.812 320 164 10 105 397 55 334 3.46e-21 99.0
Msa0077560 MtrunA17_Chr4g0035661 26.786 448 245 16 39 462 72 460 2.13e-20 97.1
Msa0077560 MtrunA17_Chr7g0269681 39.583 144 77 3 264 399 55 196 8.97e-20 93.2
Msa0077560 MtrunA17_Chr7g0245931 27.469 324 161 11 105 393 107 391 1.07e-19 94.4
Msa0077560 MtrunA17_Chr4g0069141 27.949 390 203 15 47 396 139 490 1.41e-19 94.7
Msa0077560 MtrunA17_Chr2g0295881 27.273 385 197 12 98 440 247 590 2.07e-19 93.6
Msa0077560 MtrunA17_Chr3g0145071 28.531 354 179 13 130 462 170 470 3.34e-19 93.2
Msa0077560 MtrunA17_Chr7g0258991 27.869 305 156 10 115 396 129 392 3.33e-18 89.7
Msa0077560 MtrunA17_Chr3g0122121 27.394 376 197 16 59 396 99 436 3.45e-18 89.7
Msa0077560 MtrunA17_Chr4g0070001 28.929 280 152 9 130 397 218 462 7.50e-18 88.6
Msa0077560 MtrunA17_Chr4g0067421 27.523 327 167 10 98 396 255 539 8.94e-18 88.2
Msa0077560 MtrunA17_Chr8g0386891 34.270 178 102 4 267 431 21 196 6.26e-16 80.9
Msa0077560 MtrunA17_Chr1g0193221 28.028 289 141 13 134 393 73 323 1.51e-14 78.2
Msa0077560 MtrunA17_Chr8g0367581 25.464 377 198 14 97 458 187 495 1.21e-13 75.1
Msa0077560 MtrunA17_Chr6g0484501 33.113 151 94 3 291 436 83 231 1.28e-12 68.6
Msa0077560 MtrunA17_Chr5g0445211 22.547 479 298 17 52 494 70 511 3.17e-12 70.5
Msa0077560 MtrunA17_Chr3g0142841 26.059 307 165 13 89 374 136 401 1.79e-11 68.2
Msa0077560 MtrunA17_Chr8g0390991 33.333 138 85 3 291 428 53 183 2.69e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077560 AT4G14330.1 58.846 780 238 17 1 751 1 726 0.0 800
Msa0077560 AT4G21270.1 33.333 345 176 13 99 420 478 791 1.01e-34 142
Msa0077560 AT4G05190.1 32.394 355 203 13 59 393 429 766 5.66e-33 136
Msa0077560 AT4G05190.2 32.394 355 203 13 59 393 416 753 1.35e-32 135
Msa0077560 AT2G37420.1 28.000 500 281 20 18 477 3 463 4.48e-32 134
Msa0077560 AT2G37420.2 28.000 500 281 20 18 477 3 463 4.48e-32 134
Msa0077560 AT2G36200.1 31.169 385 188 15 59 400 13 363 3.12e-31 131
Msa0077560 AT2G36200.2 31.169 385 188 15 59 400 13 363 3.19e-31 132
Msa0077560 AT1G09170.2 29.032 434 233 15 18 422 397 784 1.46e-30 129
Msa0077560 AT1G09170.4 29.032 434 233 15 18 422 397 784 1.60e-30 129
Msa0077560 AT1G09170.3 29.197 411 218 14 18 399 397 763 1.68e-30 129
Msa0077560 AT1G09170.7 29.197 411 218 14 18 399 397 763 1.68e-30 129
Msa0077560 AT1G09170.5 29.197 411 218 14 18 399 397 763 4.85e-30 128
Msa0077560 AT2G28620.1 29.108 426 238 15 59 448 51 448 7.87e-30 127
Msa0077560 AT2G28620.3 29.108 426 238 15 59 448 51 448 7.87e-30 127
Msa0077560 AT2G28620.2 29.108 426 238 15 59 448 51 448 7.87e-30 127
Msa0077560 AT2G22610.1 26.590 519 301 16 63 556 437 900 1.60e-29 126
Msa0077560 AT4G27180.1 31.692 325 178 12 99 404 434 733 1.84e-29 125
Msa0077560 AT4G27180.2 31.692 325 178 12 99 404 434 733 1.84e-29 125
Msa0077560 AT2G22610.3 26.590 519 301 16 63 556 438 901 2.02e-29 126
Msa0077560 AT2G22610.2 27.011 522 285 18 63 533 437 913 2.47e-29 125
Msa0077560 AT3G45850.2 31.003 329 175 9 97 400 100 401 2.68e-29 125
Msa0077560 AT3G45850.1 31.003 329 175 9 97 400 100 401 2.68e-29 125
Msa0077560 AT2G47500.2 27.803 446 259 13 26 445 367 775 5.51e-29 124
Msa0077560 AT2G47500.1 27.803 446 259 13 26 445 367 775 6.12e-29 124
Msa0077560 AT5G27000.1 30.163 368 192 15 59 399 395 724 1.37e-28 123
Msa0077560 AT1G73860.1 30.704 355 199 12 95 430 551 877 4.77e-28 121
Msa0077560 AT1G73860.2 30.704 355 199 13 95 430 468 794 8.94e-28 120
Msa0077560 AT1G18410.3 29.538 325 174 11 95 399 531 820 1.73e-27 120
Msa0077560 AT1G18410.2 29.538 325 174 11 95 399 531 820 1.73e-27 120
Msa0077560 AT1G18410.4 29.538 325 174 11 95 399 674 963 1.97e-27 120
Msa0077560 AT1G72250.2 28.151 476 270 16 79 539 525 943 2.14e-27 119
Msa0077560 AT3G44730.1 31.419 296 164 7 124 406 446 715 2.20e-27 119
Msa0077560 AT3G44730.4 31.419 296 164 7 124 406 446 715 2.20e-27 119
Msa0077560 AT1G72250.1 28.151 476 270 16 79 539 516 934 2.22e-27 119
Msa0077560 AT1G72250.4 28.151 476 270 16 79 539 536 954 2.60e-27 119
Msa0077560 AT1G72250.3 28.151 476 270 16 79 539 537 955 2.72e-27 119
Msa0077560 AT3G44730.2 31.419 296 164 7 124 406 491 760 2.92e-27 119
Msa0077560 AT3G44730.3 31.419 296 164 7 124 406 491 760 2.92e-27 119
Msa0077560 AT5G60930.1 28.783 337 190 9 94 396 40 360 6.00e-27 118
Msa0077560 AT3G10310.1 32.119 302 154 9 124 406 430 699 7.81e-27 117
Msa0077560 AT5G60930.3 28.783 337 190 9 94 396 40 360 7.94e-27 118
Msa0077560 AT3G10310.2 32.119 302 154 9 124 406 430 699 8.24e-27 117
Msa0077560 AT5G60930.2 28.783 337 190 9 94 396 40 360 8.64e-27 118
Msa0077560 AT1G18410.5 29.577 355 191 12 95 431 521 834 1.25e-26 117
Msa0077560 AT5G54670.1 31.546 317 181 13 99 400 443 738 1.51e-26 116
Msa0077560 AT5G54670.2 31.546 317 181 13 99 400 443 738 1.51e-26 116
Msa0077560 AT3G54870.3 27.830 424 234 12 115 506 165 548 1.57e-26 116
Msa0077560 AT3G54870.1 27.830 424 234 12 115 506 165 548 1.59e-26 116
Msa0077560 AT5G54670.3 31.546 317 181 13 99 400 383 678 1.59e-26 116
Msa0077560 AT3G54870.2 27.830 424 234 12 115 506 165 548 2.09e-26 116
Msa0077560 AT1G18410.1 30.650 323 165 12 95 399 674 955 3.27e-26 115
Msa0077560 AT1G09170.6 29.570 372 190 13 18 360 397 725 1.43e-25 113
Msa0077560 AT1G09170.8 29.570 372 190 13 18 360 397 725 1.43e-25 113
Msa0077560 AT1G63640.5 28.954 411 227 15 26 406 425 800 1.47e-25 114
Msa0077560 AT1G63640.1 28.954 411 227 15 26 406 435 810 1.49e-25 114
Msa0077560 AT1G63640.4 28.954 411 227 15 26 406 435 810 1.49e-25 114
Msa0077560 AT1G63640.3 28.954 411 227 15 26 406 435 810 1.52e-25 114
Msa0077560 AT5G27550.2 27.520 367 201 11 90 440 168 485 2.87e-25 112
Msa0077560 AT5G27550.1 27.520 367 201 11 90 440 168 485 2.87e-25 112
Msa0077560 AT5G65930.2 27.974 311 173 11 113 406 945 1221 3.05e-25 113
Msa0077560 AT5G65930.1 27.974 311 173 11 113 406 944 1220 3.21e-25 112
Msa0077560 AT5G65930.3 27.974 311 173 11 113 406 951 1227 3.45e-25 112
Msa0077560 AT3G16060.1 29.851 335 175 10 98 415 218 509 5.05e-25 111
Msa0077560 AT1G55550.1 26.420 405 246 12 81 465 111 483 2.42e-24 109
Msa0077560 AT1G63640.2 28.230 418 214 14 26 406 435 803 2.99e-24 109
Msa0077560 AT5G47820.2 27.720 386 214 14 91 436 42 402 3.92e-24 109
Msa0077560 AT5G47820.1 27.720 386 214 14 91 436 42 402 3.92e-24 109
Msa0077560 AT1G18550.1 27.974 311 182 9 97 396 202 481 4.26e-24 108
Msa0077560 AT5G02370.1 27.483 302 180 7 99 396 74 340 4.98e-24 107
Msa0077560 AT1G12430.2 28.750 400 228 15 115 492 131 495 1.20e-23 107
Msa0077560 AT1G12430.1 28.750 400 228 15 115 492 131 495 1.29e-23 107
Msa0077560 AT5G41310.1 27.723 404 221 12 59 438 423 779 2.03e-23 107
Msa0077560 AT5G27950.1 27.108 332 199 10 86 396 95 404 3.85e-23 105
Msa0077560 AT3G50240.2 28.490 351 188 11 91 400 56 384 4.10e-22 102
Msa0077560 AT3G50240.4 28.490 351 188 11 91 400 56 384 4.25e-22 102
Msa0077560 AT3G50240.1 28.490 351 188 11 91 400 56 384 4.38e-22 102
Msa0077560 AT3G17360.3 27.206 408 201 17 34 396 149 505 9.85e-22 102
Msa0077560 AT3G17360.2 27.206 408 201 17 34 396 149 505 1.01e-21 102
Msa0077560 AT3G17360.1 27.206 408 201 17 34 396 149 505 1.05e-21 102
Msa0077560 AT3G49650.1 28.873 284 152 7 130 396 95 345 1.06e-21 101
Msa0077560 AT3G44050.1 29.262 393 206 16 56 414 91 445 1.28e-21 101
Msa0077560 AT3G63480.2 28.448 348 174 13 97 412 52 356 2.20e-21 98.6
Msa0077560 AT3G63480.1 28.775 351 173 12 97 412 52 360 6.72e-21 97.1
Msa0077560 AT1G01950.1 26.119 402 213 15 36 393 38 399 1.03e-20 98.2
Msa0077560 AT1G01950.2 26.119 402 213 15 36 393 38 399 1.08e-20 98.2
Msa0077560 AT1G01950.3 26.119 402 213 15 36 393 38 399 1.17e-20 97.8
Msa0077560 AT3G19050.1 28.398 412 208 17 46 414 178 545 1.19e-20 98.6
Msa0077560 AT1G59540.1 26.558 369 210 12 116 462 60 389 2.96e-20 96.7
Msa0077560 AT3G16630.2 28.045 353 179 12 78 396 215 526 8.59e-20 95.1
Msa0077560 AT3G16630.1 28.045 353 179 12 78 396 215 526 8.59e-20 95.1
Msa0077560 AT2G21380.2 29.373 303 158 10 110 396 159 421 1.90e-19 94.4
Msa0077560 AT2G21380.1 29.373 303 158 10 110 396 159 421 1.90e-19 94.4
Msa0077560 AT5G06670.2 28.620 297 146 10 124 396 131 385 3.50e-19 93.2
Msa0077560 AT5G06670.3 28.620 297 146 10 124 396 131 385 3.50e-19 93.2
Msa0077560 AT5G06670.5 28.620 297 146 10 124 396 131 385 4.26e-19 92.8
Msa0077560 AT5G06670.8 28.197 305 153 10 116 396 123 385 4.82e-19 92.4
Msa0077560 AT5G06670.4 28.197 305 153 10 116 396 123 385 4.82e-19 92.4
Msa0077560 AT5G06670.7 28.197 305 153 10 116 396 123 385 4.82e-19 92.4
Msa0077560 AT3G12020.4 31.000 300 135 13 124 396 134 388 6.80e-19 92.4
Msa0077560 AT3G12020.1 31.000 300 135 13 124 396 134 388 6.80e-19 92.4
Msa0077560 AT1G01950.4 28.522 291 142 10 136 393 1 258 7.02e-19 92.0
Msa0077560 AT4G39050.1 28.904 301 156 11 113 396 156 415 1.34e-18 91.7
Msa0077560 AT3G12020.3 30.333 300 137 12 124 396 134 388 1.57e-18 91.3
Msa0077560 AT3G12020.2 30.333 300 137 12 124 396 134 388 1.57e-18 91.3
Msa0077560 AT1G09170.1 36.806 144 81 3 264 399 586 727 3.58e-18 90.1
Msa0077560 AT5G06670.6 30.070 286 136 12 134 396 150 394 1.56e-17 88.2
Msa0077560 AT5G06670.1 30.070 286 136 12 134 396 150 394 1.56e-17 88.2
Msa0077560 AT4G14150.1 26.748 329 182 11 99 396 126 426 2.92e-17 87.4
Msa0077560 AT1G21730.1 28.477 302 158 11 115 396 131 394 3.67e-17 86.7
Msa0077560 AT3G23670.1 24.403 377 204 11 59 396 97 431 1.68e-16 84.7
Msa0077560 AT3G23670.2 24.403 377 204 11 59 396 97 431 2.45e-16 84.0
Msa0077560 AT3G50240.3 28.904 301 151 11 141 400 4 282 1.03e-15 82.0
Msa0077560 AT5G27950.2 26.538 260 157 7 149 396 1 238 1.20e-15 80.9
Msa0077560 AT2G21300.2 27.915 283 147 10 130 394 101 344 8.43e-15 79.0
Msa0077560 AT2G21300.4 27.915 283 147 10 130 394 101 344 8.43e-15 79.0
Msa0077560 AT2G21300.3 27.915 283 147 10 130 394 101 344 8.43e-15 79.0
Msa0077560 AT2G21300.1 27.915 283 147 10 130 394 101 344 8.43e-15 79.0
Msa0077560 AT2G21300.5 27.915 283 147 10 130 394 101 344 8.43e-15 79.0
Msa0077560 AT1G59540.2 25.893 336 188 12 149 462 1 297 1.11e-14 78.6
Msa0077560 AT5G10470.1 26.899 316 175 11 97 397 183 457 1.81e-14 78.2
Msa0077560 AT3G51150.1 24.533 428 227 15 99 499 66 424 2.03e-14 78.2
Msa0077560 AT5G10470.2 26.899 316 175 11 97 397 183 457 2.04e-14 78.2
Msa0077560 AT3G51150.2 24.533 428 227 15 99 499 66 424 2.11e-14 77.8
Msa0077560 AT3G51150.4 24.533 428 227 15 99 499 66 424 2.11e-14 77.8
Msa0077560 AT3G51150.3 24.533 428 227 15 99 499 66 424 2.11e-14 77.8
Msa0077560 AT4G24170.1 25.442 283 155 9 130 394 80 324 4.81e-13 73.6
Msa0077560 AT4G24170.2 25.442 283 155 9 130 394 80 324 4.81e-13 73.6
Msa0077560 AT5G65460.3 24.768 323 180 12 97 397 179 460 6.89e-13 73.2

Find 200 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTTCCATTTCCTTTC+TGG -0.014771 1_2:-54534439 Msa0077560:five_prime_UTR
GGAATCTTTGTTGTTGAAAT+TGG 0.116300 1_2:+54534257 None:intergenic
TGCTTCAAAATTCACATTAA+TGG 0.168349 1_2:-54534412 Msa0077560:exon
AAGGATTAATGGTGTGAAAT+TGG 0.190481 1_2:-54534028 Msa0077560:CDS
CTTTCTTCCATTTCCTTTCT+GGG 0.191940 1_2:-54534438 Msa0077560:five_prime_UTR
GTTCTAACTCTAGATCTATT+AGG 0.195325 1_2:-54534149 Msa0077560:CDS
ATTAGGGTTAAGGCTGATTT+TGG 0.209720 1_2:-54534132 Msa0077560:CDS
ACAAGAGTTGGAAAAGAAAT+TGG 0.209936 1_2:-54531910 Msa0077560:CDS
GAAGAAAGATTGAATCTTTA+GGG 0.218402 1_2:+54534453 None:intergenic
CTTCAATCTCTTCTCTCAAC+TGG 0.238301 1_2:-54534489 Msa0077560:five_prime_UTR
GGAGGTGGTGGTGGAGGTGG+AGG 0.251870 1_2:-54533757 Msa0077560:CDS
GGAAGAAAGATTGAATCTTT+AGG 0.252673 1_2:+54534452 None:intergenic
GGTGGTGGAGGTGGAGGGTT+TGG 0.257552 1_2:-54533751 Msa0077560:CDS
TCGCTTTGGCTCCATATTCT+AGG 0.260142 1_2:+54532201 None:intergenic
GGGTTCGTTCGTTTACCTTT+AGG 0.261875 1_2:+54531943 None:intergenic
GGAGGTGGAGGGTTTGGATT+TGG 0.275827 1_2:-54533745 Msa0077560:CDS
TGCTTCCAAGTTCTCCTTGT+TGG 0.303528 1_2:+54531134 None:intergenic
ACAATCTCTACCCTAGAATA+TGG 0.305778 1_2:-54532212 Msa0077560:CDS
ACTTGAAGTGATGGGGAAAA+AGG 0.310814 1_2:-54532929 Msa0077560:CDS
AAGAATGCAACCTATATATC+TGG 0.311451 1_2:-54532904 Msa0077560:CDS
GTGAATTCTCAGCATCCTAT+TGG 0.311812 1_2:+54531302 None:intergenic
CTTGCTTGTAAAACAGATAA+AGG 0.314448 1_2:+54534171 None:intergenic
AGGATTAATGGTGTGAAATT+GGG 0.314756 1_2:-54534027 Msa0077560:CDS
AGGGATTGGTGTTCCATATT+GGG 0.326230 1_2:+54531242 None:intergenic
ATTGTCTTGTGGATCTCTTT+AGG 0.326561 1_2:+54532230 None:intergenic
GTAAGTTTGCTGTCTCTAAA+AGG 0.328198 1_2:+54532430 None:intergenic
AACTTGGAAGCATATGTTAT+TGG 0.328997 1_2:-54531123 Msa0077560:CDS
CAAAGGGAGCTCTCCCAATA+TGG 0.331740 1_2:-54531255 Msa0077560:CDS
TTAATCTCCTCCTCACTTGC+AGG 0.333781 1_2:+54531966 None:intergenic
GAATCTTTGTTGTTGAAATT+GGG 0.334497 1_2:+54534258 None:intergenic
ATTCTCGCAATAACTTCAAT+TGG 0.339440 1_2:+54534222 None:intergenic
TTCTAACTCTAGATCTATTA+GGG 0.347769 1_2:-54534148 Msa0077560:CDS
TTTGGTGATGGGTGTGGATG+TGG 0.353870 1_2:+54534282 None:intergenic
TTTGTGGAATCAAGGATTAA+TGG 0.354980 1_2:-54534039 Msa0077560:CDS
ATTGAACAAGCTGGTCAAAC+TGG 0.355976 1_2:-54532633 Msa0077560:CDS
AAGAGGGTATTTACTCAGTA+TGG 0.360775 1_2:+54530875 None:intergenic
TGCTTCATTTCCAGATATAT+AGG 0.362177 1_2:+54532894 None:intergenic
GCAGGCGGGGATTGTGTATA+GGG 0.362748 1_2:-54533932 Msa0077560:CDS
GAAGAGTCTTCCTCCTTAAC+CGG 0.362939 1_2:+54532152 None:intergenic
TAGGGATTGGTGTTCCATAT+TGG 0.364220 1_2:+54531241 None:intergenic
CCGAAGATAGAGGATTATTC+TGG 0.365897 1_2:-54531348 Msa0077560:CDS
GGTAAGAGTCATACGATGTT+TGG 0.372659 1_2:-54533964 Msa0077560:CDS
ATAACTTCAATTGGGTGTTC+AGG 0.383722 1_2:+54534231 None:intergenic
TACAAAAGCACGGATGATCT+TGG 0.385204 1_2:-54531672 Msa0077560:CDS
AGGGCTTTGAGGGATATTCT+TGG 0.387276 1_2:-54533913 Msa0077560:CDS
TTGTGGATCTCTTTAGGATC+AGG 0.388675 1_2:+54532236 None:intergenic
ACAAGAAATTTGTGGAATCA+AGG 0.392206 1_2:-54534047 Msa0077560:CDS
AATGGTGAAATCGATGGATT+TGG 0.394062 1_2:-54531649 Msa0077560:CDS
ATGAAATAGTAGTATTTCAT+AGG 0.394073 1_2:+54531007 None:intergenic
AGTGGAGAAAGAGGTGATAG+AGG 0.394089 1_2:-54531403 Msa0077560:CDS
GGGTGTGGATGTGGTGGTGT+AGG 0.397359 1_2:+54534291 None:intergenic
TCCACCACCACCTCCATTAG+TGG 0.398128 1_2:+54533765 None:intergenic
CTCTAGATCTATTAGGGTTA+AGG 0.400943 1_2:-54534142 Msa0077560:CDS
TCCACTAATGGAGGTGGTGG+TGG 0.407208 1_2:-54533766 Msa0077560:CDS
GTATTTGGACAGGGTTGGTT+TGG 0.407900 1_2:+54531564 None:intergenic
TGAAAACGAGTCAAAAGAAA+TGG 0.408896 1_2:-54531730 Msa0077560:CDS
AGTGGAAGAAGATGAGGAAG+TGG 0.412522 1_2:-54531421 Msa0077560:CDS
ACTAATGGAGGTGGTGGTGG+AGG 0.414276 1_2:-54533763 Msa0077560:CDS
TTGTTGTTGAAATTGGGATT+TGG 0.414314 1_2:+54534264 None:intergenic
TGTTTCTGAGGAAGAGGAAC+TGG 0.414383 1_2:-54534079 Msa0077560:CDS
TTGGGATTTGGTGATGGGTG+TGG 0.417125 1_2:+54534276 None:intergenic
AGCAAAACCCAGAAAGGAAA+TGG 0.418124 1_2:+54534431 None:intergenic
TTGAAATTGGGATTTGGTGA+TGG 0.418140 1_2:+54534270 None:intergenic
ATGTATGGACCGACTGGTTC+TGG 0.420486 1_2:-54533985 Msa0077560:CDS
ACGAACTATACATTTCGCTT+TGG 0.425631 1_2:+54532187 None:intergenic
AATGGAGGTGGTGGTGGAGG+TGG 0.425905 1_2:-54533760 Msa0077560:CDS
AAATGTACTATTATGATGTA+TGG 0.428051 1_2:-54534000 Msa0077560:CDS
TGCTGTGCTAAGAGCTAAAG+TGG 0.429631 1_2:-54531997 Msa0077560:CDS
GAGTTATCAAATGCGTTGAA+TGG 0.429834 1_2:+54534358 None:intergenic
AGCAGGCGGGGATTGTGTAT+AGG 0.429994 1_2:-54533933 Msa0077560:CDS
TGGTCCTCATACCCCGGTTA+AGG 0.430902 1_2:-54532165 Msa0077560:CDS
AGATGAGGAAGTGGAGAAAG+AGG 0.433971 1_2:-54531412 Msa0077560:CDS
CGCTTTGGCTCCATATTCTA+GGG 0.438148 1_2:+54532202 None:intergenic
AGTGATGGTGATTCTTCTAA+AGG 0.439182 1_2:-54533865 Msa0077560:CDS
AGAGGTGATAGAGGAAAAGA+GGG 0.443722 1_2:-54531394 Msa0077560:CDS
TCTTCAGCGCTATATTTCCT+TGG 0.445828 1_2:+54532491 None:intergenic
AAGAGGTGATAGAGGAAAAG+AGG 0.445864 1_2:-54531395 Msa0077560:CDS
GGAGCTGACAAGGAAAATAA+TGG 0.446418 1_2:-54531327 Msa0077560:CDS
AGTGTCCAACAAGGAGAACT+TGG 0.452092 1_2:-54531139 Msa0077560:CDS
GTGGAGGGTTTGGATTTGGT+TGG 0.454092 1_2:-54533741 Msa0077560:CDS
TTTCCAACTCTTGTCTCAGA+TGG 0.455740 1_2:+54531919 None:intergenic
CATATTGGGAGAGCTCCCTT+TGG 0.459595 1_2:+54531256 None:intergenic
GTGATGGTGATTCTTCTAAA+GGG 0.459995 1_2:-54533864 Msa0077560:CDS
CTCAAAAGAAATTCAGAAAG+TGG 0.460854 1_2:-54532863 Msa0077560:CDS
CCAGAATAATCCTCTATCTT+CGG 0.462382 1_2:+54531348 None:intergenic
AAGCATCGTCTCAATTTCAA+TGG 0.463001 1_2:-54534327 Msa0077560:CDS
AGGAAAATAATGGTTCCAAT+AGG 0.463360 1_2:-54531317 Msa0077560:CDS
TTGAGGGATATTCTTGGAGA+TGG 0.464538 1_2:-54533907 Msa0077560:CDS
CCAACTCTTGTCTCAGATGG+CGG 0.465010 1_2:+54531922 None:intergenic
CAACTCTTGTCTCAGATGGC+GGG 0.465050 1_2:+54531923 None:intergenic
TTCTTCTCACTTGATTTCAC+AGG 0.465509 1_2:+54531177 None:intergenic
CTCCAGCTCAACAAACTCAT+TGG 0.466125 1_2:+54531869 None:intergenic
GATTGTGTATAGGGCTTTGA+GGG 0.466134 1_2:-54533923 Msa0077560:CDS
TGAAATTGGGATTTGGTGAT+GGG 0.466283 1_2:+54534271 None:intergenic
TAACAAAAGTCCGAAGATAG+AGG 0.467142 1_2:-54531358 Msa0077560:CDS
TGAGGGATATTCTTGGAGAT+GGG 0.467584 1_2:-54533906 Msa0077560:CDS
GTTTATCATGAAGTTACAAA+TGG 0.468535 1_2:-54532087 Msa0077560:CDS
CTTGCGCGCGAAGTTATTGT+CGG 0.468571 1_2:-54531603 Msa0077560:CDS
CAAAAGAAATGGAGCCGAAT+GGG 0.472089 1_2:-54531719 Msa0077560:CDS
TATATATCTGGAAATGAAGC+AGG 0.472214 1_2:-54532892 Msa0077560:CDS
GGATTAATGGTGTGAAATTG+GGG 0.476005 1_2:-54534026 Msa0077560:CDS
GACCAATGAGTTTGTTGAGC+TGG 0.477397 1_2:-54531871 Msa0077560:CDS
TGAGCTGGAGAGGAAGAGAA+TGG 0.480271 1_2:-54531856 Msa0077560:CDS
AAAGCTGTACAATATGTGAT+TGG 0.483239 1_2:-54531064 Msa0077560:three_prime_UTR
GGATGTGGTGGTGTAGGTGC+TGG 0.486779 1_2:+54534297 None:intergenic
TCCTCCTTAACCGGGGTATG+AGG 0.489867 1_2:+54532161 None:intergenic
TATGTTTGTGCACCAAACTT+TGG 0.490049 1_2:-54531513 Msa0077560:CDS
TGCGAGAATTCGTGACTACC+CGG 0.490085 1_2:-54534208 Msa0077560:CDS
TACTCTCTGTGGAAACCAAA+GGG 0.492142 1_2:-54531271 Msa0077560:CDS
AGAAAGGATATTGCAGCAGC+AGG 0.494111 1_2:-54531832 Msa0077560:CDS
TGAAATTCTGAGGAAGAGAC+TGG 0.495469 1_2:-54531802 Msa0077560:CDS
GAAGTTATTGTCGGCATGCA+AGG 0.497297 1_2:-54531594 Msa0077560:CDS
AGCTGGTCAAACTGGATTTG+AGG 0.498372 1_2:-54532625 Msa0077560:CDS
CTTGGAAGAGGAAGAAGGTG+TGG 0.498494 1_2:+54534386 None:intergenic
AAAGCACTCTTTGTAATGAC+AGG 0.500609 1_2:-54532822 Msa0077560:CDS
AGGTAAATGATCACATTTCA+AGG 0.500630 1_2:+54531027 None:intergenic
AGAGGAAGAGAATGGAAGAA+AGG 0.502616 1_2:-54531848 Msa0077560:CDS
TGTGAAATCAAGTGAGAAGA+AGG 0.502711 1_2:-54531175 Msa0077560:CDS
CTCTTCAAAGCAAGAGCGTA+AGG 0.503952 1_2:-54531754 Msa0077560:CDS
TTAGCCGTCCTCCCACTGTT+GGG 0.505464 1_2:+54532685 None:intergenic
AGGAGAAGAAGAAGCAGAGC+AGG 0.509255 1_2:-54531454 Msa0077560:CDS
GGATTGTGTATAGGGCTTTG+AGG 0.509476 1_2:-54533924 Msa0077560:CDS
CTTGTTCTACAAGAAATTTG+TGG 0.509556 1_2:-54534055 Msa0077560:CDS
TTTGGATGTTCGAAGCAGGC+GGG 0.512838 1_2:-54533946 Msa0077560:CDS
GGTGATGGGTGTGGATGTGG+TGG 0.513114 1_2:+54534285 None:intergenic
TTCTCGCAATAACTTCAATT+GGG 0.514101 1_2:+54534223 None:intergenic
TAGGTCAAACTTGAAGTGAT+GGG 0.516158 1_2:-54532937 Msa0077560:CDS
ATTAGCCGTCCTCCCACTGT+TGG 0.517267 1_2:+54532684 None:intergenic
GAGGTGGTGGTGGAGGTGGA+GGG 0.518438 1_2:-54533756 Msa0077560:CDS
TCAAAGTATTTGGACAGGGT+TGG 0.520555 1_2:+54531559 None:intergenic
TGAATGGATTTGCTTGGAAG+AGG 0.523605 1_2:+54534374 None:intergenic
GATGTTTGGATGTTCGAAGC+AGG 0.524123 1_2:-54533950 Msa0077560:CDS
ATGCGTTGAATGGATTTGCT+TGG 0.524842 1_2:+54534368 None:intergenic
ACGGCTAATGCTTGTGGACA+TGG 0.527289 1_2:-54532670 Msa0077560:CDS
TCAGAAAATATTGAACAAGC+TGG 0.529266 1_2:-54532642 Msa0077560:CDS
GGTGTCTGTTTCTGAGGAAG+AGG 0.533081 1_2:-54534085 Msa0077560:CDS
ATAACTTCGCGCGCAAGGAA+TGG 0.533798 1_2:+54531609 None:intergenic
ATTTGCTTGGAAGAGGAAGA+AGG 0.534731 1_2:+54534381 None:intergenic
TGATGGGGTGTCTGTTTCTG+AGG 0.536317 1_2:-54534091 Msa0077560:CDS
TTCAATTGGGTGTTCAGGAG+GGG 0.536985 1_2:+54534236 None:intergenic
TTGTCCACTAATGGAGGTGG+TGG 0.539176 1_2:-54533769 Msa0077560:CDS
TGAGGAGGAGATTAACCTAA+AGG 0.539837 1_2:-54531958 Msa0077560:CDS
GTCTAAGAACAATGCTTCAA+AGG 0.541228 1_2:-54533719 Msa0077560:intron
CTAATGCTTGTGGACATGGC+AGG 0.542042 1_2:-54532666 Msa0077560:CDS
CTTCAATTGGGTGTTCAGGA+GGG 0.542953 1_2:+54534235 None:intergenic
TTCAGAAAGTGGAGAAGCGA+AGG 0.543184 1_2:-54532852 Msa0077560:CDS
ATGAGTTTGTTGAGCTGGAG+AGG 0.543613 1_2:-54531866 Msa0077560:CDS
AAGAGTCTTCCTCCTTAACC+GGG 0.545497 1_2:+54532153 None:intergenic
TGATAAAGTGGAAGAAGATG+AGG 0.546943 1_2:-54531427 Msa0077560:CDS
GTAGGTCAAACTTGAAGTGA+TGG 0.547426 1_2:-54532938 Msa0077560:intron
CCGCCATCTGAGACAAGAGT+TGG 0.548364 1_2:-54531922 Msa0077560:CDS
CAAACTTACCATGCTTCTGC+AGG 0.553017 1_2:-54532416 Msa0077560:intron
ACTTCAATTGGGTGTTCAGG+AGG 0.559031 1_2:+54534234 None:intergenic
GAGGGATATTCTTGGAGATG+GGG 0.559140 1_2:-54533905 Msa0077560:CDS
AGGATCAAGAATTGCTGCAA+TGG 0.559733 1_2:-54532114 Msa0077560:CDS
AAAGCGAAATGTATAGTTCG+TGG 0.559976 1_2:-54532185 Msa0077560:CDS
CGACAATAACTTCGCGCGCA+AGG 0.566431 1_2:+54531604 None:intergenic
AATTCTTGATCCTAAAATGA+CGG 0.569423 1_2:+54532124 None:intergenic
TTCAATCTCTTCTCTCAACT+GGG 0.570469 1_2:-54534488 Msa0077560:five_prime_UTR
TTACTCTCTGTGGAAACCAA+AGG 0.570732 1_2:-54531272 Msa0077560:CDS
GGATTATTCTGGAGCTGACA+AGG 0.572145 1_2:-54531337 Msa0077560:CDS
GTGGTTGAGTCCATTGCAAA+TGG 0.573506 1_2:-54532466 Msa0077560:CDS
CACAACATATTTACTCTCTG+TGG 0.574191 1_2:-54531282 Msa0077560:CDS
GGGAGGACGGCTAATGCTTG+TGG 0.576293 1_2:-54532676 Msa0077560:CDS
TCAAAAGAAATGGAGCCGAA+TGG 0.576334 1_2:-54531720 Msa0077560:CDS
AGGAGGAAGTTGAAATTCTG+AGG 0.579813 1_2:-54531812 Msa0077560:CDS
ATTATGATGTATGGACCGAC+TGG 0.580492 1_2:-54533991 Msa0077560:CDS
AGTACAGTATATGAAGATGA+AGG 0.580728 1_2:-54531474 Msa0077560:CDS
GTTTGGATGTTCGAAGCAGG+CGG 0.582763 1_2:-54533947 Msa0077560:CDS
ATGTGAATCACCATTTGCAA+TGG 0.583556 1_2:+54532456 None:intergenic
AGAGCAGGATCATGATAAAG+TGG 0.584752 1_2:-54531439 Msa0077560:CDS
GTTGATTACCTGCAGAAGCA+TGG 0.585396 1_2:+54532408 None:intergenic
ACAGATTCTGAAGGTAGTGA+TGG 0.588168 1_2:-54533880 Msa0077560:CDS
TCCTCATACCCCGGTTAAGG+AGG 0.589007 1_2:-54532162 Msa0077560:CDS
GGTATTTACTCAGTATGGAA+TGG 0.591619 1_2:+54530880 None:intergenic
GGAAACAGCTCCTGCAAGTG+AGG 0.597967 1_2:-54531976 Msa0077560:CDS
AGTTCGTGGTCCTCATACCC+CGG 0.605308 1_2:-54532171 Msa0077560:CDS
ATGTCCCAACAGTGGGAGGA+CGG 0.607165 1_2:-54532689 Msa0077560:CDS
CTAGGGTAGAGATTGTCTTG+TGG 0.610211 1_2:+54532219 None:intergenic
AACAGCTCCTGCAAGTGAGG+AGG 0.610821 1_2:-54531973 Msa0077560:CDS
TTGAGACGATGCTTTGAACG+TGG 0.613136 1_2:+54534336 None:intergenic
TCTTGGAATGGTGAAATCGA+TGG 0.615678 1_2:-54531655 Msa0077560:CDS
GCTTAGTGTTTACAAAAGCA+CGG 0.616489 1_2:-54531682 Msa0077560:CDS
AAATATAGCGCTGAAGAGAG+TGG 0.617437 1_2:-54532485 Msa0077560:CDS
AAGGATATTGCAGCAGCAGG+AGG 0.618726 1_2:-54531829 Msa0077560:CDS
GCTGTACAATATGTGATTGG+AGG 0.620047 1_2:-54531061 Msa0077560:three_prime_UTR
CTCGATGTCCCAACAGTGGG+AGG 0.638434 1_2:-54532693 Msa0077560:CDS
ATACTCGATGTCCCAACAGT+GGG 0.638772 1_2:-54532696 Msa0077560:CDS
ATATATCTGGAAATGAAGCA+GGG 0.639127 1_2:-54532891 Msa0077560:CDS
AGGTCAAACTTGAAGTGATG+GGG 0.643466 1_2:-54532936 Msa0077560:CDS
TTGGAAGAGGAAGAAGGTGT+GGG 0.648163 1_2:+54534387 None:intergenic
GATGGGGATACAGATTCTGA+AGG 0.652121 1_2:-54533889 Msa0077560:CDS
GAAATCGATGGATTTGGACA+TGG 0.652176 1_2:-54531643 Msa0077560:CDS
GATACTCGATGTCCCAACAG+TGG 0.654849 1_2:-54532697 Msa0077560:CDS
AAGCACGGATGATCTTGGAA+TGG 0.656263 1_2:-54531667 Msa0077560:CDS
GAGTTCTAGAAGTCACTGCA+TGG 0.664378 1_2:-54532800 Msa0077560:intron
TTGGATGTTCGAAGCAGGCG+GGG 0.667487 1_2:-54533945 Msa0077560:CDS
GATTAATGGTGTGAAATTGG+GGG 0.689277 1_2:-54534025 Msa0077560:CDS
AGAGTCTTCCTCCTTAACCG+GGG 0.728596 1_2:+54532154 None:intergenic
TGACTCTTACCAGAACCAGT+CGG 0.741916 1_2:+54533976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTGTACAAAATTTTGT+TGG - chr1_2:54531930-54531949 Msa0077560:CDS 15.0%
!! TAGTTAAAAACAAAATAGTT+TGG + chr1_2:54532050-54532069 None:intergenic 15.0%
!! AAATGTACTATTATGATGTA+TGG - chr1_2:54531409-54531428 Msa0077560:CDS 20.0%
!!! ATGTTTTACTTATTATGTTC+CGG - chr1_2:54532203-54532222 Msa0077560:CDS 20.0%
!!! TTCATAATTTGTACACATTT+TGG - chr1_2:54532263-54532282 Msa0077560:CDS 20.0%
!! TCAATTAATTAAAAAGGGTA+TGG + chr1_2:54532401-54532420 None:intergenic 20.0%
!! CACACTCAATTAATTAAAAA+GGG + chr1_2:54532406-54532425 None:intergenic 20.0%
!! TTAAAGAAAGAAAATCGATA+TGG + chr1_2:54532836-54532855 None:intergenic 20.0%
!! TTCAAATGAATCCTTAAAAA+GGG + chr1_2:54533114-54533133 None:intergenic 20.0%
!! ATGAAATAGTAGTATTTCAT+AGG + chr1_2:54534405-54534424 None:intergenic 20.0%
!!! TTCAGTATTATTTTTTTGTG+TGG - chr1_2:54534440-54534459 Msa0077560:five_prime_UTR 20.0%
! GAAGAAAGATTGAATCTTTA+GGG + chr1_2:54530959-54530978 None:intergenic 25.0%
! TGCTTCAAAATTCACATTAA+TGG - chr1_2:54530997-54531016 Msa0077560:three_prime_UTR 25.0%
!!! GAATCTTTGTTGTTGAAATT+GGG + chr1_2:54531154-54531173 None:intergenic 25.0%
! TTCTAACTCTAGATCTATTA+GGG - chr1_2:54531261-54531280 Msa0077560:CDS 25.0%
!! TATAGAGATTTTACTCTTGA+TGG - chr1_2:54531301-54531320 Msa0077560:CDS 25.0%
!! ATAGAGATTTTACTCTTGAT+GGG - chr1_2:54531302-54531321 Msa0077560:CDS 25.0%
!!! TGTTTTGGAGATTTATAATG+AGG - chr1_2:54531603-54531622 Msa0077560:CDS 25.0%
! AAACTATTGAGCTATATAGA+TGG + chr1_2:54531965-54531984 None:intergenic 25.0%
! ATATAGCTCAATAGTTTATC+TGG - chr1_2:54531968-54531987 Msa0077560:CDS 25.0%
!! CATATCTAAGGTTTAAGATT+AGG - chr1_2:54532137-54532156 Msa0077560:CDS 25.0%
!! TTAAGATTAGGATTGCTATT+TGG - chr1_2:54532149-54532168 Msa0077560:CDS 25.0%
!!! TAATTTGTACACATTTTGGT+TGG - chr1_2:54532267-54532286 Msa0077560:CDS 25.0%
! GCACACTCAATTAATTAAAA+AGG + chr1_2:54532407-54532426 None:intergenic 25.0%
!! TTTTCTTTCTTTAATCTTGC+AGG - chr1_2:54532842-54532861 Msa0077560:CDS 25.0%
!! TTTTCTGTTTTCCCTTTTTA+AGG - chr1_2:54533100-54533119 Msa0077560:intron 25.0%
! CTTCAAATGAATCCTTAAAA+AGG + chr1_2:54533115-54533134 None:intergenic 25.0%
! AATTCTTGATCCTAAAATGA+CGG + chr1_2:54533288-54533307 None:intergenic 25.0%
! GTTTATCATGAAGTTACAAA+TGG - chr1_2:54533322-54533341 Msa0077560:intron 25.0%
!!! TTTTTCAAAGTATTTGGACA+GGG + chr1_2:54533857-54533876 None:intergenic 25.0%
!!! ATTTTTCAAAGTATTTGGAC+AGG + chr1_2:54533858-54533877 None:intergenic 25.0%
!! TGTCCAAATACTTTGAAAAA+TGG - chr1_2:54533857-54533876 Msa0077560:CDS 25.0%
!!! ACTCCATTTTTCAAAGTATT+TGG + chr1_2:54533863-54533882 None:intergenic 25.0%
GGAAGAAAGATTGAATCTTT+AGG + chr1_2:54530960-54530979 None:intergenic 30.0%
! TTGTTGTTGAAATTGGGATT+TGG + chr1_2:54531148-54531167 None:intergenic 30.0%
!! GGAATCTTTGTTGTTGAAAT+TGG + chr1_2:54531155-54531174 None:intergenic 30.0%
TTCTCGCAATAACTTCAATT+GGG + chr1_2:54531189-54531208 None:intergenic 30.0%
ATTCTCGCAATAACTTCAAT+TGG + chr1_2:54531190-54531209 None:intergenic 30.0%
CTTGCTTGTAAAACAGATAA+AGG + chr1_2:54531241-54531260 None:intergenic 30.0%
GTTCTAACTCTAGATCTATT+AGG - chr1_2:54531260-54531279 Msa0077560:CDS 30.0%
! TAGAGATTTTACTCTTGATG+GGG - chr1_2:54531303-54531322 Msa0077560:CDS 30.0%
CTTGTTCTACAAGAAATTTG+TGG - chr1_2:54531354-54531373 Msa0077560:CDS 30.0%
ACAAGAAATTTGTGGAATCA+AGG - chr1_2:54531362-54531381 Msa0077560:CDS 30.0%
TTTGTGGAATCAAGGATTAA+TGG - chr1_2:54531370-54531389 Msa0077560:CDS 30.0%
AAGGATTAATGGTGTGAAAT+TGG - chr1_2:54531381-54531400 Msa0077560:CDS 30.0%
AGGATTAATGGTGTGAAATT+GGG - chr1_2:54531382-54531401 Msa0077560:CDS 30.0%
!! TTTTGTTCAGGTTACTGTTT+TGG - chr1_2:54531588-54531607 Msa0077560:CDS 30.0%
! TATGATCTTTTGTCCACTAA+TGG - chr1_2:54531631-54531650 Msa0077560:CDS 30.0%
TGTGATGTAACATAACATGT+TGG - chr1_2:54531728-54531747 Msa0077560:CDS 30.0%
! AGTCTGTTGTTGTACATTTT+AGG - chr1_2:54531803-54531822 Msa0077560:CDS 30.0%
TTCTTCAGATCATATGATTC+TGG - chr1_2:54531832-54531851 Msa0077560:CDS 30.0%
!! GATCATATGATTCTGGAATT+TGG - chr1_2:54531839-54531858 Msa0077560:CDS 30.0%
!! TTGGCTTTAGGATTGTTATT+TGG - chr1_2:54531858-54531877 Msa0077560:CDS 30.0%
TTTGTGAGAATATAGCGAAA+CGG + chr1_2:54531886-54531905 None:intergenic 30.0%
TGTTCTTCTGATCATATCTA+AGG - chr1_2:54532125-54532144 Msa0077560:CDS 30.0%
TTCATGAGCATATCACTAAA+CGG + chr1_2:54532177-54532196 None:intergenic 30.0%
AGGATAAGATAAGCTTATCT+GGG - chr1_2:54532320-54532339 Msa0077560:intron 30.0%
TAATTGAGTGTGCTAACATT+TGG - chr1_2:54532414-54532433 Msa0077560:intron 30.0%
ACAAGTTAAATTGCAGAAGT+AGG + chr1_2:54532453-54532472 None:intergenic 30.0%
!! ACTTCTGCAATTTAACTTGT+AGG - chr1_2:54532453-54532472 Msa0077560:CDS 30.0%
AAGAATGCAACCTATATATC+TGG - chr1_2:54532505-54532524 Msa0077560:CDS 30.0%
TGCTTCATTTCCAGATATAT+AGG + chr1_2:54532518-54532537 None:intergenic 30.0%
TATATATCTGGAAATGAAGC+AGG - chr1_2:54532517-54532536 Msa0077560:intron 30.0%
ATATATCTGGAAATGAAGCA+GGG - chr1_2:54532518-54532537 Msa0077560:intron 30.0%
CTCAAAAGAAATTCAGAAAG+TGG - chr1_2:54532546-54532565 Msa0077560:intron 30.0%
!!! ACGACTTTTTTATTCTGATC+AGG - chr1_2:54532688-54532707 Msa0077560:CDS 30.0%
TCAGAAAATATTGAACAAGC+TGG - chr1_2:54532767-54532786 Msa0077560:intron 30.0%
ACAAGAGTTGGAAAAGAAAT+TGG - chr1_2:54533499-54533518 Msa0077560:intron 30.0%
TGAAAACGAGTCAAAAGAAA+TGG - chr1_2:54533679-54533698 Msa0077560:intron 30.0%
! AGTTTTCTCATAAACCCATT+CGG + chr1_2:54533707-54533726 None:intergenic 30.0%
AGTACAGTATATGAAGATGA+AGG - chr1_2:54533935-54533954 Msa0077560:CDS 30.0%
AGGAAAATAATGGTTCCAAT+AGG - chr1_2:54534092-54534111 Msa0077560:CDS 30.0%
! AACTTGGAAGCATATGTTAT+TGG - chr1_2:54534286-54534305 Msa0077560:CDS 30.0%
AAAGCTGTACAATATGTGAT+TGG - chr1_2:54534345-54534364 Msa0077560:CDS 30.0%
AGGTAAATGATCACATTTCA+AGG + chr1_2:54534385-54534404 None:intergenic 30.0%
TTCAATCTCTTCTCTCAACT+GGG - chr1_2:54530921-54530940 Msa0077560:three_prime_UTR 35.0%
TCTTTCTTCCATTTCCTTTC+TGG - chr1_2:54530970-54530989 Msa0077560:three_prime_UTR 35.0%
CTTTCTTCCATTTCCTTTCT+GGG - chr1_2:54530971-54530990 Msa0077560:three_prime_UTR 35.0%
!!! TTTTGAAGCAAAACCCAGAA+AGG + chr1_2:54530987-54531006 None:intergenic 35.0%
GAGTTATCAAATGCGTTGAA+TGG + chr1_2:54531054-54531073 None:intergenic 35.0%
! AAGCATCGTCTCAATTTCAA+TGG - chr1_2:54531082-54531101 Msa0077560:three_prime_UTR 35.0%
!! TGAAATTGGGATTTGGTGAT+GGG + chr1_2:54531141-54531160 None:intergenic 35.0%
!! TTGAAATTGGGATTTGGTGA+TGG + chr1_2:54531142-54531161 None:intergenic 35.0%
ATAACTTCAATTGGGTGTTC+AGG + chr1_2:54531181-54531200 None:intergenic 35.0%
CTCTAGATCTATTAGGGTTA+AGG - chr1_2:54531267-54531286 Msa0077560:CDS 35.0%
!! ATTAGGGTTAAGGCTGATTT+TGG - chr1_2:54531277-54531296 Msa0077560:CDS 35.0%
GGATTAATGGTGTGAAATTG+GGG - chr1_2:54531383-54531402 Msa0077560:CDS 35.0%
GATTAATGGTGTGAAATTGG+GGG - chr1_2:54531384-54531403 Msa0077560:CDS 35.0%
! AGTGATGGTGATTCTTCTAA+AGG - chr1_2:54531544-54531563 Msa0077560:CDS 35.0%
! GTGATGGTGATTCTTCTAAA+GGG - chr1_2:54531545-54531564 Msa0077560:CDS 35.0%
!! TCTTCTAAAGGGTTTTGTCT+CGG - chr1_2:54531556-54531575 Msa0077560:CDS 35.0%
GTCTAAGAACAATGCTTCAA+AGG - chr1_2:54531690-54531709 Msa0077560:CDS 35.0%
!! TGATTCTGGAATTTGGCTTT+AGG - chr1_2:54531846-54531865 Msa0077560:CDS 35.0%
AATTGTATGTGCTGAGCATT+TGG - chr1_2:54532069-54532088 Msa0077560:CDS 35.0%
CTATAGAGTACACAAGAAAG+TGG + chr1_2:54532101-54532120 None:intergenic 35.0%
CACTTTCTTGTGTACTCTAT+AGG - chr1_2:54532099-54532118 Msa0077560:CDS 35.0%
TGCTCTTTCTTTAACTCAGT+TGG - chr1_2:54532294-54532313 Msa0077560:intron 35.0%
! TTCTTTAACTCAGTTGGTTC+AGG - chr1_2:54532300-54532319 Msa0077560:intron 35.0%
CAGGATAAGATAAGCTTATC+TGG - chr1_2:54532319-54532338 Msa0077560:intron 35.0%
AAATTGCAGAAGTAGGAAAG+TGG + chr1_2:54532446-54532465 None:intergenic 35.0%
TAGGTCAAACTTGAAGTGAT+GGG - chr1_2:54532472-54532491 Msa0077560:CDS 35.0%
! AAAGCACTCTTTGTAATGAC+AGG - chr1_2:54532587-54532606 Msa0077560:intron 35.0%
GTTCTGATCGAATTTATCGT+TGG - chr1_2:54532655-54532674 Msa0077560:CDS 35.0%
TGATCGAATTTATCGTTGGT+TGG - chr1_2:54532659-54532678 Msa0077560:CDS 35.0%
CAGACTGCAAAAATTAACCA+AGG - chr1_2:54532901-54532920 Msa0077560:CDS 35.0%
ATGTGAATCACCATTTGCAA+TGG + chr1_2:54532956-54532975 None:intergenic 35.0%
!! GTAAGTTTGCTGTCTCTAAA+AGG + chr1_2:54532982-54533001 None:intergenic 35.0%
AACTTGGAATAACATGGAAC+AGG + chr1_2:54533058-54533077 None:intergenic 35.0%
AGAGCTAACTTGGAATAACA+TGG + chr1_2:54533064-54533083 None:intergenic 35.0%
ATTGTCTTGTGGATCTCTTT+AGG + chr1_2:54533182-54533201 None:intergenic 35.0%
ACAATCTCTACCCTAGAATA+TGG - chr1_2:54533197-54533216 Msa0077560:intron 35.0%
ACGAACTATACATTTCGCTT+TGG + chr1_2:54533225-54533244 None:intergenic 35.0%
AAAGCGAAATGTATAGTTCG+TGG - chr1_2:54533224-54533243 Msa0077560:intron 35.0%
!! TCTTCTTCAACCGTCATTTT+AGG - chr1_2:54533275-54533294 Msa0077560:intron 35.0%
CAAAAAGCTCATGAAGAAAG+AGG - chr1_2:54533382-54533401 Msa0077560:intron 35.0%
GCTTAGTGTTTACAAAAGCA+CGG - chr1_2:54533727-54533746 Msa0077560:CDS 35.0%
! AATGGTGAAATCGATGGATT+TGG - chr1_2:54533760-54533779 Msa0077560:CDS 35.0%
TATGTTTGTGCACCAAACTT+TGG - chr1_2:54533896-54533915 Msa0077560:CDS 35.0%
!! CATGCTTTTTGACCAAAGTT+TGG + chr1_2:54533911-54533930 None:intergenic 35.0%
TGATAAAGTGGAAGAAGATG+AGG - chr1_2:54533982-54534001 Msa0077560:CDS 35.0%
TAACAAAAGTCCGAAGATAG+AGG - chr1_2:54534051-54534070 Msa0077560:CDS 35.0%
CCAGAATAATCCTCTATCTT+CGG + chr1_2:54534064-54534083 None:intergenic 35.0%
CACAACATATTTACTCTCTG+TGG - chr1_2:54534127-54534146 Msa0077560:CDS 35.0%
!!! CATCAGACCTCTTTTTTGTA+GGG + chr1_2:54534189-54534208 None:intergenic 35.0%
!!! TCATCAGACCTCTTTTTTGT+AGG + chr1_2:54534190-54534209 None:intergenic 35.0%
TTCTTCTCACTTGATTTCAC+AGG + chr1_2:54534235-54534254 None:intergenic 35.0%
TGTGAAATCAAGTGAGAAGA+AGG - chr1_2:54534234-54534253 Msa0077560:CDS 35.0%
!!! TGTTTTAAGAGTGTCCAACA+AGG - chr1_2:54534261-54534280 Msa0077560:CDS 35.0%
GGTATTTACTCAGTATGGAA+TGG + chr1_2:54534532-54534551 None:intergenic 35.0%
CTTCAATCTCTTCTCTCAAC+TGG - chr1_2:54530920-54530939 Msa0077560:three_prime_UTR 40.0%
AGCAAAACCCAGAAAGGAAA+TGG + chr1_2:54530981-54531000 None:intergenic 40.0%
ATTTGCTTGGAAGAGGAAGA+AGG + chr1_2:54531031-54531050 None:intergenic 40.0%
! TGAATGGATTTGCTTGGAAG+AGG + chr1_2:54531038-54531057 None:intergenic 40.0%
! ATGCGTTGAATGGATTTGCT+TGG + chr1_2:54531044-54531063 None:intergenic 40.0%
! AAAGGCTTGTCTTTTCGATC+CGG + chr1_2:54531223-54531242 None:intergenic 40.0%
ATTATGATGTATGGACCGAC+TGG - chr1_2:54531418-54531437 Msa0077560:CDS 40.0%
GGTAAGAGTCATACGATGTT+TGG - chr1_2:54531445-54531464 Msa0077560:CDS 40.0%
! GATTGTGTATAGGGCTTTGA+GGG - chr1_2:54531486-54531505 Msa0077560:CDS 40.0%
TTGAGGGATATTCTTGGAGA+TGG - chr1_2:54531502-54531521 Msa0077560:CDS 40.0%
TGAGGGATATTCTTGGAGAT+GGG - chr1_2:54531503-54531522 Msa0077560:CDS 40.0%
! ACAGATTCTGAAGGTAGTGA+TGG - chr1_2:54531529-54531548 Msa0077560:CDS 40.0%
!! CTTCTAAAGGGTTTTGTCTC+GGG - chr1_2:54531557-54531576 Msa0077560:CDS 40.0%
!! TTCTAAAGGGTTTTGTCTCG+GGG - chr1_2:54531558-54531577 Msa0077560:CDS 40.0%
! GATCTTTTGTCCACTAATGG+AGG - chr1_2:54531634-54531653 Msa0077560:CDS 40.0%
TTATGTTCCGGTACACCAAA+AGG - chr1_2:54532215-54532234 Msa0077560:CDS 40.0%
ACCAAAAGGTCAACTGAGAT+CGG - chr1_2:54532229-54532248 Msa0077560:CDS 40.0%
TGAGTGTGCTAACATTTGGA+TGG - chr1_2:54532418-54532437 Msa0077560:CDS 40.0%
GTAGGTCAAACTTGAAGTGA+TGG - chr1_2:54532471-54532490 Msa0077560:CDS 40.0%
AGGTCAAACTTGAAGTGATG+GGG - chr1_2:54532473-54532492 Msa0077560:CDS 40.0%
! ACTTGAAGTGATGGGGAAAA+AGG - chr1_2:54532480-54532499 Msa0077560:CDS 40.0%
!!! GCATGGTATAGTTGCTTTTG+TGG - chr1_2:54532626-54532645 Msa0077560:CDS 40.0%
!!! GGTATAGTTGCTTTTGTGGA+AGG - chr1_2:54532630-54532649 Msa0077560:CDS 40.0%
!!! ATAGTTGCTTTTGTGGAAGG+TGG - chr1_2:54532633-54532652 Msa0077560:CDS 40.0%
ATTGAACAAGCTGGTCAAAC+TGG - chr1_2:54532776-54532795 Msa0077560:intron 40.0%
! TGGATTTGAGGCAAAAATGC+AGG - chr1_2:54532796-54532815 Msa0077560:intron 40.0%
TCTTCAGCGCTATATTTCCT+TGG + chr1_2:54532921-54532940 None:intergenic 40.0%
! AAATATAGCGCTGAAGAGAG+TGG - chr1_2:54532924-54532943 Msa0077560:CDS 40.0%
CAGCATCAAAAGAGCTAACT+TGG + chr1_2:54533074-54533093 None:intergenic 40.0%
!! TTGTGGATCTCTTTAGGATC+AGG + chr1_2:54533176-54533195 None:intergenic 40.0%
AGGATCAAGAATTGCTGCAA+TGG - chr1_2:54533295-54533314 Msa0077560:intron 40.0%
TGAGGAGGAGATTAACCTAA+AGG - chr1_2:54533451-54533470 Msa0077560:intron 40.0%
TTTCCAACTCTTGTCTCAGA+TGG + chr1_2:54533493-54533512 None:intergenic 40.0%
AGAGGAAGAGAATGGAAGAA+AGG - chr1_2:54533561-54533580 Msa0077560:intron 40.0%
AGGAGGAAGTTGAAATTCTG+AGG - chr1_2:54533597-54533616 Msa0077560:intron 40.0%
! TGAAATTCTGAGGAAGAGAC+TGG - chr1_2:54533607-54533626 Msa0077560:intron 40.0%
TCAAAAGAAATGGAGCCGAA+TGG - chr1_2:54533689-54533708 Msa0077560:intron 40.0%
CAAAAGAAATGGAGCCGAAT+GGG - chr1_2:54533690-54533709 Msa0077560:intron 40.0%
! TACAAAAGCACGGATGATCT+TGG - chr1_2:54533737-54533756 Msa0077560:CDS 40.0%
TCTTGGAATGGTGAAATCGA+TGG - chr1_2:54533754-54533773 Msa0077560:CDS 40.0%
! GAAATCGATGGATTTGGACA+TGG - chr1_2:54533766-54533785 Msa0077560:CDS 40.0%
! TCAAAGTATTTGGACAGGGT+TGG + chr1_2:54533853-54533872 None:intergenic 40.0%
AGAGCAGGATCATGATAAAG+TGG - chr1_2:54533970-54533989 Msa0077560:CDS 40.0%
AAGAGGTGATAGAGGAAAAG+AGG - chr1_2:54534014-54534033 Msa0077560:CDS 40.0%
AGAGGTGATAGAGGAAAAGA+GGG - chr1_2:54534015-54534034 Msa0077560:CDS 40.0%
CCGAAGATAGAGGATTATTC+TGG - chr1_2:54534061-54534080 Msa0077560:CDS 40.0%
GGAGCTGACAAGGAAAATAA+TGG - chr1_2:54534082-54534101 Msa0077560:CDS 40.0%
GTGAATTCTCAGCATCCTAT+TGG + chr1_2:54534110-54534129 None:intergenic 40.0%
TTACTCTCTGTGGAAACCAA+AGG - chr1_2:54534137-54534156 Msa0077560:CDS 40.0%
TACTCTCTGTGGAAACCAAA+GGG - chr1_2:54534138-54534157 Msa0077560:CDS 40.0%
! AGGGATTGGTGTTCCATATT+GGG + chr1_2:54534170-54534189 None:intergenic 40.0%
! TAGGGATTGGTGTTCCATAT+TGG + chr1_2:54534171-54534190 None:intergenic 40.0%
CACCAATCCCTACAAAAAAG+AGG - chr1_2:54534179-54534198 Msa0077560:CDS 40.0%
!!! GACCTCTTTTTTGTAGGGAT+TGG + chr1_2:54534184-54534203 None:intergenic 40.0%
GCTGTACAATATGTGATTGG+AGG - chr1_2:54534348-54534367 Msa0077560:CDS 40.0%
! TTGGAAGAGGAAGAAGGTGT+GGG + chr1_2:54531025-54531044 None:intergenic 45.0%
! TTGAGACGATGCTTTGAACG+TGG + chr1_2:54531076-54531095 None:intergenic 45.0%
TTCAATTGGGTGTTCAGGAG+GGG + chr1_2:54531176-54531195 None:intergenic 45.0%
CTTCAATTGGGTGTTCAGGA+GGG + chr1_2:54531177-54531196 None:intergenic 45.0%
ACTTCAATTGGGTGTTCAGG+AGG + chr1_2:54531178-54531197 None:intergenic 45.0%
! AAGGCTTGTCTTTTCGATCC+GGG + chr1_2:54531222-54531241 None:intergenic 45.0%
! TGTTTCTGAGGAAGAGGAAC+TGG - chr1_2:54531330-54531349 Msa0077560:CDS 45.0%
TGACTCTTACCAGAACCAGT+CGG + chr1_2:54531436-54531455 None:intergenic 45.0%
GATGTTTGGATGTTCGAAGC+AGG - chr1_2:54531459-54531478 Msa0077560:CDS 45.0%
GGATTGTGTATAGGGCTTTG+AGG - chr1_2:54531485-54531504 Msa0077560:CDS 45.0%
!! AGGGCTTTGAGGGATATTCT+TGG - chr1_2:54531496-54531515 Msa0077560:CDS 45.0%
GAGGGATATTCTTGGAGATG+GGG - chr1_2:54531504-54531523 Msa0077560:CDS 45.0%
GATGGGGATACAGATTCTGA+AGG - chr1_2:54531520-54531539 Msa0077560:CDS 45.0%
! CTTTTGTCCACTAATGGAGG+TGG - chr1_2:54531637-54531656 Msa0077560:CDS 45.0%
!! CAGTTGACCTTTTGGTGTAC+CGG + chr1_2:54532225-54532244 None:intergenic 45.0%
! TCCGATCTCAGTTGACCTTT+TGG + chr1_2:54532233-54532252 None:intergenic 45.0%
TTCAGAAAGTGGAGAAGCGA+AGG - chr1_2:54532557-54532576 Msa0077560:intron 45.0%
!! GAGTTCTAGAAGTCACTGCA+TGG - chr1_2:54532609-54532628 Msa0077560:intron 45.0%
ATACTCGATGTCCCAACAGT+GGG - chr1_2:54532713-54532732 Msa0077560:intron 45.0%
AGCTGGTCAAACTGGATTTG+AGG - chr1_2:54532784-54532803 Msa0077560:intron 45.0%
GTGGTTGAGTCCATTGCAAA+TGG - chr1_2:54532943-54532962 Msa0077560:intron 45.0%
CAAACTTACCATGCTTCTGC+AGG - chr1_2:54532993-54533012 Msa0077560:intron 45.0%
GTTGATTACCTGCAGAAGCA+TGG + chr1_2:54533004-54533023 None:intergenic 45.0%
CTAGGGTAGAGATTGTCTTG+TGG + chr1_2:54533193-54533212 None:intergenic 45.0%
! CGCTTTGGCTCCATATTCTA+GGG + chr1_2:54533210-54533229 None:intergenic 45.0%
! TCGCTTTGGCTCCATATTCT+AGG + chr1_2:54533211-54533230 None:intergenic 45.0%
AAGAGTCTTCCTCCTTAACC+GGG + chr1_2:54533259-54533278 None:intergenic 45.0%
GAAGAGTCTTCCTCCTTAAC+CGG + chr1_2:54533260-54533279 None:intergenic 45.0%
TGCTGTGCTAAGAGCTAAAG+TGG - chr1_2:54533412-54533431 Msa0077560:intron 45.0%
TTAATCTCCTCCTCACTTGC+AGG + chr1_2:54533446-54533465 None:intergenic 45.0%
GGGTTCGTTCGTTTACCTTT+AGG + chr1_2:54533469-54533488 None:intergenic 45.0%
!! GACCAATGAGTTTGTTGAGC+TGG - chr1_2:54533538-54533557 Msa0077560:intron 45.0%
CTCCAGCTCAACAAACTCAT+TGG + chr1_2:54533543-54533562 None:intergenic 45.0%
!! ATGAGTTTGTTGAGCTGGAG+AGG - chr1_2:54533543-54533562 Msa0077560:intron 45.0%
AGAAAGGATATTGCAGCAGC+AGG - chr1_2:54533577-54533596 Msa0077560:intron 45.0%
! CTCTTCAAAGCAAGAGCGTA+AGG - chr1_2:54533655-54533674 Msa0077560:intron 45.0%
AAGCACGGATGATCTTGGAA+TGG - chr1_2:54533742-54533761 Msa0077560:CDS 45.0%
GAAGTTATTGTCGGCATGCA+AGG - chr1_2:54533815-54533834 Msa0077560:CDS 45.0%
!! GTATTTGGACAGGGTTGGTT+TGG + chr1_2:54533848-54533867 None:intergenic 45.0%
AGTGGAAGAAGATGAGGAAG+TGG - chr1_2:54533988-54534007 Msa0077560:CDS 45.0%
AGATGAGGAAGTGGAGAAAG+AGG - chr1_2:54533997-54534016 Msa0077560:CDS 45.0%
AGTGGAGAAAGAGGTGATAG+AGG - chr1_2:54534006-54534025 Msa0077560:CDS 45.0%
!! GGATTATTCTGGAGCTGACA+AGG - chr1_2:54534072-54534091 Msa0077560:CDS 45.0%
AGTGTCCAACAAGGAGAACT+TGG - chr1_2:54534270-54534289 Msa0077560:CDS 45.0%
TGCTTCCAAGTTCTCCTTGT+TGG + chr1_2:54534278-54534297 None:intergenic 45.0%
CTTGGAAGAGGAAGAAGGTG+TGG + chr1_2:54531026-54531045 None:intergenic 50.0%
!! TTTGGTGATGGGTGTGGATG+TGG + chr1_2:54531130-54531149 None:intergenic 50.0%
!! TTGGGATTTGGTGATGGGTG+TGG + chr1_2:54531136-54531155 None:intergenic 50.0%
TGCGAGAATTCGTGACTACC+CGG - chr1_2:54531201-54531220 Msa0077560:CDS 50.0%
!! TGATGGGGTGTCTGTTTCTG+AGG - chr1_2:54531318-54531337 Msa0077560:CDS 50.0%
!! GGTGTCTGTTTCTGAGGAAG+AGG - chr1_2:54531324-54531343 Msa0077560:CDS 50.0%
! ATGTATGGACCGACTGGTTC+TGG - chr1_2:54531424-54531443 Msa0077560:CDS 50.0%
GTTTGGATGTTCGAAGCAGG+CGG - chr1_2:54531462-54531481 Msa0077560:CDS 50.0%
TTTGGATGTTCGAAGCAGGC+GGG - chr1_2:54531463-54531482 Msa0077560:CDS 50.0%
TTGTCCACTAATGGAGGTGG+TGG - chr1_2:54531640-54531659 Msa0077560:CDS 50.0%
! GTGGAGGGTTTGGATTTGGT+TGG - chr1_2:54531668-54531687 Msa0077560:CDS 50.0%
GATACTCGATGTCCCAACAG+TGG - chr1_2:54532712-54532731 Msa0077560:intron 50.0%
ACGGCTAATGCTTGTGGACA+TGG - chr1_2:54532739-54532758 Msa0077560:intron 50.0%
CTAATGCTTGTGGACATGGC+AGG - chr1_2:54532743-54532762 Msa0077560:intron 50.0%
AGAGTCTTCCTCCTTAACCG+GGG + chr1_2:54533258-54533277 None:intergenic 50.0%
CAACTCTTGTCTCAGATGGC+GGG + chr1_2:54533489-54533508 None:intergenic 50.0%
CCAACTCTTGTCTCAGATGG+CGG + chr1_2:54533490-54533509 None:intergenic 50.0%
TGAGCTGGAGAGGAAGAGAA+TGG - chr1_2:54533553-54533572 Msa0077560:intron 50.0%
AAGGATATTGCAGCAGCAGG+AGG - chr1_2:54533580-54533599 Msa0077560:intron 50.0%
ATAACTTCGCGCGCAAGGAA+TGG + chr1_2:54533803-54533822 None:intergenic 50.0%
CTTGCGCGCGAAGTTATTGT+CGG - chr1_2:54533806-54533825 Msa0077560:CDS 50.0%
AGGAGAAGAAGAAGCAGAGC+AGG - chr1_2:54533955-54533974 Msa0077560:CDS 50.0%
CATATTGGGAGAGCTCCCTT+TGG + chr1_2:54534156-54534175 None:intergenic 50.0%
CAAAGGGAGCTCTCCCAATA+TGG - chr1_2:54534154-54534173 Msa0077560:CDS 50.0%
TTGGATGTTCGAAGCAGGCG+GGG - chr1_2:54531464-54531483 Msa0077560:CDS 55.0%
AGCAGGCGGGGATTGTGTAT+AGG - chr1_2:54531476-54531495 Msa0077560:CDS 55.0%
GCAGGCGGGGATTGTGTATA+GGG - chr1_2:54531477-54531496 Msa0077560:CDS 55.0%
!! AAGGGTTTTGTCTCGGGGTG+AGG - chr1_2:54531563-54531582 Msa0077560:CDS 55.0%
! CGGGGTGAGGACTTTTGTTC+AGG - chr1_2:54531576-54531595 Msa0077560:CDS 55.0%
! TCCACTAATGGAGGTGGTGG+TGG - chr1_2:54531643-54531662 Msa0077560:CDS 55.0%
TCCACCACCACCTCCATTAG+TGG + chr1_2:54531647-54531666 None:intergenic 55.0%
!! ACTAATGGAGGTGGTGGTGG+AGG - chr1_2:54531646-54531665 Msa0077560:CDS 55.0%
GGAGGTGGAGGGTTTGGATT+TGG - chr1_2:54531664-54531683 Msa0077560:CDS 55.0%
ATGTCCCAACAGTGGGAGGA+CGG - chr1_2:54532720-54532739 Msa0077560:intron 55.0%
TTAGCCGTCCTCCCACTGTT+GGG + chr1_2:54532727-54532746 None:intergenic 55.0%
ATTAGCCGTCCTCCCACTGT+TGG + chr1_2:54532728-54532747 None:intergenic 55.0%
AGTTCGTGGTCCTCATACCC+CGG - chr1_2:54533238-54533257 Msa0077560:intron 55.0%
TGGTCCTCATACCCCGGTTA+AGG - chr1_2:54533244-54533263 Msa0077560:intron 55.0%
TCCTCATACCCCGGTTAAGG+AGG - chr1_2:54533247-54533266 Msa0077560:intron 55.0%
TCCTCCTTAACCGGGGTATG+AGG + chr1_2:54533251-54533270 None:intergenic 55.0%
GGAAACAGCTCCTGCAAGTG+AGG - chr1_2:54533433-54533452 Msa0077560:intron 55.0%
AACAGCTCCTGCAAGTGAGG+AGG - chr1_2:54533436-54533455 Msa0077560:intron 55.0%
! CCGCCATCTGAGACAAGAGT+TGG - chr1_2:54533487-54533506 Msa0077560:intron 55.0%
CGACAATAACTTCGCGCGCA+AGG + chr1_2:54533808-54533827 None:intergenic 55.0%
! GGATGTGGTGGTGTAGGTGC+TGG + chr1_2:54531115-54531134 None:intergenic 60.0%
! GGGTGTGGATGTGGTGGTGT+AGG + chr1_2:54531121-54531140 None:intergenic 60.0%
!! GGTGATGGGTGTGGATGTGG+TGG + chr1_2:54531127-54531146 None:intergenic 60.0%
!! AATGGAGGTGGTGGTGGAGG+TGG - chr1_2:54531649-54531668 Msa0077560:CDS 60.0%
CTCGATGTCCCAACAGTGGG+AGG - chr1_2:54532716-54532735 Msa0077560:intron 60.0%
GGGAGGACGGCTAATGCTTG+TGG - chr1_2:54532733-54532752 Msa0077560:intron 60.0%
!! GAGGTGGTGGTGGAGGTGGA+GGG - chr1_2:54531653-54531672 Msa0077560:CDS 65.0%
!! GGTGGTGGAGGTGGAGGGTT+TGG - chr1_2:54531658-54531677 Msa0077560:CDS 65.0%
!! GGAGGTGGTGGTGGAGGTGG+AGG - chr1_2:54531652-54531671 Msa0077560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54530877 54534554 54530877 ID=Msa0077560;Name=Msa0077560
chr1_2 mRNA 54530877 54534554 54530877 ID=Msa0077560-mRNA-1;Parent=Msa0077560;Name=Msa0077560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=139|1|1|1|1|1|5|239|754
chr1_2 exon 54530877 54532309 54530877 ID=Msa0077560-mRNA-1:exon:16919;Parent=Msa0077560-mRNA-1
chr1_2 exon 54532417 54532527 54532417 ID=Msa0077560-mRNA-1:exon:16918;Parent=Msa0077560-mRNA-1
chr1_2 exon 54532614 54532721 54532614 ID=Msa0077560-mRNA-1:exon:16917;Parent=Msa0077560-mRNA-1
chr1_2 exon 54532801 54532956 54532801 ID=Msa0077560-mRNA-1:exon:16916;Parent=Msa0077560-mRNA-1
chr1_2 exon 54533720 54534554 54533720 ID=Msa0077560-mRNA-1:exon:16915;Parent=Msa0077560-mRNA-1
chr1_2 five_prime_UTR 54534416 54534554 54534416 ID=Msa0077560-mRNA-1:five_prime_utr;Parent=Msa0077560-mRNA-1
chr1_2 CDS 54533720 54534415 54533720 ID=Msa0077560-mRNA-1:cds;Parent=Msa0077560-mRNA-1
chr1_2 CDS 54532801 54532956 54532801 ID=Msa0077560-mRNA-1:cds;Parent=Msa0077560-mRNA-1
chr1_2 CDS 54532614 54532721 54532614 ID=Msa0077560-mRNA-1:cds;Parent=Msa0077560-mRNA-1
chr1_2 CDS 54532417 54532527 54532417 ID=Msa0077560-mRNA-1:cds;Parent=Msa0077560-mRNA-1
chr1_2 CDS 54531116 54532309 54531116 ID=Msa0077560-mRNA-1:cds;Parent=Msa0077560-mRNA-1
chr1_2 three_prime_UTR 54530877 54531115 54530877 ID=Msa0077560-mRNA-1:three_prime_utr;Parent=Msa0077560-mRNA-1
Gene Sequence

>Msa0077560

ATGGCTCCCACACCTTCTTCCTCTTCCAAGCAAATCCATTCAACGCATTTGATAACTCCACGTTCAAAGCATCGTCTCAATTTCAATGGTCTCAAACCAGCACCTACACCACCACATCCACACCCATCACCAAATCCCAATTTCAACAACAAAGATTCCCCTCCTGAACACCCAATTGAAGTTATTGCGAGAATTCGTGACTACCCGGATCGAAAAGACAAGCCTTTATCTGTTTTACAAGCAAGTTCTAACTCTAGATCTATTAGGGTTAAGGCTGATTTTGGTTATAGAGATTTTACTCTTGATGGGGTGTCTGTTTCTGAGGAAGAGGAACTGGACTTGTTCTACAAGAAATTTGTGGAATCAAGGATTAATGGTGTGAAATTGGGGGATAAATGTACTATTATGATGTATGGACCGACTGGTTCTGGTAAGAGTCATACGATGTTTGGATGTTCGAAGCAGGCGGGGATTGTGTATAGGGCTTTGAGGGATATTCTTGGAGATGGGGATACAGATTCTGAAGGTAGTGATGGTGATTCTTCTAAAGGGTTTTGTCTCGGGGTGAGGACTTTTGTTCAGGTTACTGTTTTGGAGATTTATAATGAGGAGATTTATGATCTTTTGTCCACTAATGGAGGTGGTGGTGGAGGTGGAGGGTTTGGATTTGGTTGGTCTAAGAACAATGCTTCAAAGGTCAAACTTGAAGTGATGGGGAAAAAGGCTAAGAATGCAACCTATATATCTGGAAATGAAGCAGGGAAGATCTCAAAAGAAATTCAGAAAGTGGAGAAGCGAAGGATTGTTAAAAGCACTCTTTGTAATGACAGGAGTTCTAGAAGTCACTGCATGGTGATACTCGATGTCCCAACAGTGGGAGGACGGCTAATGCTTGTGGACATGGCAGGATCAGAAAATATTGAACAAGCTGGTCAAACTGGATTTGAGGCAAAAATGCAGACTGCAAAAATTAACCAAGGAAATATAGCGCTGAAGAGAGTGGTTGAGTCCATTGCAAATGGTGATTCACATGTGCCTTTTAGAGACAGCAAACTTACCATGCTTCTGCAGGATTCATTTGAAGATGATAAGTCAAAAATTCTAATGATACTATGCGCAAGTCCTGATCCTAAAGAGATCCACAAGACAATCTCTACCCTAGAATATGGAGCCAAAGCGAAATGTATAGTTCGTGGTCCTCATACCCCGGTTAAGGAGGAAGACTCTTCTTCAACCGTCATTTTAGGATCAAGAATTGCTGCAATGGATGAGTTTATCATGAAGTTACAAATGGAAAACAAGCTAAGAGAGAAAGAGCGAAACGAAGCGCACAAAAAGCTCATGAAGAAAGAGGAAGAAATTGCTGTGCTAAGAGCTAAAGTGGAAACAGCTCCTGCAAGTGAGGAGGAGATTAACCTAAAGGTAAACGAACGAACCCGCCATCTGAGACAAGAGTTGGAAAAGAAATTGGAAGAGTGTCAAAGAATGACCAATGAGTTTGTTGAGCTGGAGAGGAAGAGAATGGAAGAAAGGATATTGCAGCAGCAGGAGGAAGTTGAAATTCTGAGGAAGAGACTGGAAGAAATTGAGTTGCAGCTGTGCAGCTCTTCAAAGCAAGAGCGTAAGGATGAAAACGAGTCAAAAGAAATGGAGCCGAATGGGTTTATGAGAAAACTGCTTAGTGTTTACAAAAGCACGGATGATCTTGGAATGGTGAAATCGATGGATTTGGACATGGACGATCAAGAACCATTCCTTGCGCGCGAAGTTATTGTCGGCATGCAAGGCATTTCACCAAACCAACCCTGTCCAAATACTTTGAAAAATGGAGTACAAGAAGATGCTTATGTTTGTGCACCAAACTTTGGTCAAAAAGCATGTCTAAGTACAGTATATGAAGATGAAGGAGAAGAAGAAGCAGAGCAGGATCATGATAAAGTGGAAGAAGATGAGGAAGTGGAGAAAGAGGTGATAGAGGAAAAGAGGGTATGTAGTGTTGTTAACAAAAGTCCGAAGATAGAGGATTATTCTGGAGCTGACAAGGAAAATAATGGTTCCAATAGGATGCTGAGAATTCACAACATATTTACTCTCTGTGGAAACCAAAGGGAGCTCTCCCAATATGGAACACCAATCCCTACAAAAAAGAGGTCTGATGAAAGTTTTGATTTCAAATGTTCTCCTGTGAAATCAAGTGAGAAGAAGGATTCTGTTTTAAGAGTGTCCAACAAGGAGAACTTGGAAGCATATGTTATTGGAAATTAG
Protein sequence

>Msa0077560

MAPTPSSSSKQIHSTHLITPRSKHRLNFNGLKPAPTPPHPHPSPNPNFNNKDSPPEHPIEVIARIRDYPDRKDKPLSVLQASSNSRSIRVKADFGYRDFTLDGVSVSEEEELDLFYKKFVESRINGVKLGDKCTIMMYGPTGSGKSHTMFGCSKQAGIVYRALRDILGDGDTDSEGSDGDSSKGFCLGVRTFVQVTVLEIYNEEIYDLLSTNGGGGGGGGFGFGWSKNNASKVKLEVMGKKAKNATYISGNEAGKISKEIQKVEKRRIVKSTLCNDRSSRSHCMVILDVPTVGGRLMLVDMAGSENIEQAGQTGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTISTLEYGAKAKCIVRGPHTPVKEEDSSSTVILGSRIAAMDEFIMKLQMENKLREKERNEAHKKLMKKEEEIAVLRAKVETAPASEEEINLKVNERTRHLRQELEKKLEECQRMTNEFVELERKRMEERILQQQEEVEILRKRLEEIELQLCSSSKQERKDENESKEMEPNGFMRKLLSVYKSTDDLGMVKSMDLDMDDQEPFLAREVIVGMQGISPNQPCPNTLKNGVQEDAYVCAPNFGQKACLSTVYEDEGEEEAEQDHDKVEEDEEVEKEVIEEKRVCSVVNKSPKIEDYSGADKENNGSNRMLRIHNIFTLCGNQRELSQYGTPIPTKKRSDESFDFKCSPVKSSEKKDSVLRVSNKENLEAYVIGN*