Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216370 | XP_013464732.1 | 97.628 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216370 | sp|P24805|TSJT1_TOBAC | 40.940 | 149 | 87 | 1 | 1 | 149 | 1 | 148 | 1.30e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216370 | B7FHV5 | 97.628 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216370 | Msa0256570 | 0.892144 | 2.080321e-74 | -8.615850e-47 |
| Msa0216370 | Msa0295710 | 0.923031 | 4.533250e-89 | -8.615850e-47 |
| Msa0216370 | Msa0334300 | 0.899792 | 1.394706e-77 | -8.615850e-47 |
| Msa0216370 | Msa0549530 | 0.819690 | 1.017344e-52 | -8.615850e-47 |
| Msa0216370 | Msa0645880 | 0.855116 | 7.826611e-62 | -8.615850e-47 |
| Msa0216370 | Msa0685730 | 0.832315 | 1.014233e-55 | -8.615850e-47 |
| Msa0216370 | Msa1269440 | 0.806943 | 6.435454e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216370 | MtrunA17_Chr2g0317901 | 97.628 | 253 | 6 | 0 | 1 | 253 | 1 | 253 | 0.0 | 516 |
| Msa0216370 | MtrunA17_Chr2g0281901 | 66.000 | 250 | 84 | 1 | 1 | 250 | 1 | 249 | 1.98e-117 | 336 |
| Msa0216370 | MtrunA17_Chr4g0047531 | 60.956 | 251 | 97 | 1 | 1 | 250 | 64 | 314 | 5.82e-107 | 311 |
| Msa0216370 | MtrunA17_Chr1g0166351 | 47.012 | 251 | 124 | 4 | 1 | 247 | 1 | 246 | 3.38e-77 | 234 |
| Msa0216370 | MtrunA17_Chr1g0204611 | 47.222 | 252 | 122 | 5 | 1 | 247 | 1 | 246 | 1.11e-76 | 232 |
| Msa0216370 | MtrunA17_Chr2g0287871 | 41.631 | 233 | 127 | 6 | 1 | 230 | 1 | 227 | 3.44e-55 | 177 |
| Msa0216370 | MtrunA17_Chr4g0065571 | 39.056 | 233 | 134 | 6 | 1 | 230 | 1 | 228 | 6.18e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216370 | AT4G27450.1 | 78.629 | 248 | 52 | 1 | 1 | 247 | 1 | 248 | 3.80e-147 | 411 |
| Msa0216370 | AT3G15450.1 | 68.675 | 249 | 74 | 3 | 1 | 247 | 1 | 247 | 3.18e-125 | 356 |
| Msa0216370 | AT3G15450.2 | 66.839 | 193 | 60 | 3 | 1 | 191 | 1 | 191 | 4.69e-89 | 263 |
| Msa0216370 | AT5G43830.1 | 48.810 | 252 | 119 | 4 | 1 | 247 | 1 | 247 | 6.00e-80 | 241 |
| Msa0216370 | AT3G15450.3 | 64.286 | 182 | 58 | 4 | 1 | 180 | 1 | 177 | 2.49e-75 | 227 |
| Msa0216370 | AT3G22850.1 | 44.939 | 247 | 133 | 1 | 1 | 247 | 1 | 244 | 6.53e-74 | 226 |
| Msa0216370 | AT5G19140.1 | 42.241 | 232 | 127 | 5 | 1 | 230 | 1 | 227 | 3.02e-56 | 180 |
| Msa0216370 | AT5G19140.3 | 48.521 | 169 | 84 | 2 | 63 | 230 | 25 | 191 | 4.32e-51 | 166 |
| Msa0216370 | AT5G19140.2 | 39.655 | 232 | 121 | 6 | 1 | 230 | 1 | 215 | 2.50e-48 | 159 |
Find 74 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTTGATGAACAGAAAA+AGG | 0.221761 | 2_1:-62164395 | None:intergenic |
| TGTTTCTGATTGAAGCTTAT+AGG | 0.236090 | 2_1:+62164959 | Msa0216370:CDS |
| ACAACTTGATCTGGTGGATA+TGG | 0.300897 | 2_1:-62165000 | None:intergenic |
| TCACTACCTTGTTTCTTAGA+AGG | 0.306212 | 2_1:-62166070 | None:intergenic |
| TCCTTACTGAACAAGCAATA+TGG | 0.322158 | 2_1:+62164910 | Msa0216370:CDS |
| CTTGTTTCTTAGAAGGAAAC+AGG | 0.339576 | 2_1:-62166063 | None:intergenic |
| GACATATACTGCTTGTTCTT+GGG | 0.340735 | 2_1:+62164871 | Msa0216370:CDS |
| TGACATATACTGCTTGTTCT+TGG | 0.347373 | 2_1:+62164870 | Msa0216370:CDS |
| GCAGGGCTATTCAGCTCTTC+AGG | 0.347531 | 2_1:-62164242 | None:intergenic |
| TGGTGGATTGAAGTTGTATT+GGG | 0.352740 | 2_1:+62165204 | Msa0216370:CDS |
| GATTCTACAACAAAATCTTA+AGG | 0.360253 | 2_1:-62164177 | None:intergenic |
| TTCATAGAACAAGTATTATC+AGG | 0.367478 | 2_1:-62164332 | None:intergenic |
| GATGTGTGGGGCCAACTTTA+AGG | 0.380784 | 2_1:+62165798 | Msa0216370:CDS |
| TTTAAGCCTTTGTATGATGC+AGG | 0.380881 | 2_1:-62164260 | None:intergenic |
| AATACTTGTTCTATGAACTT+TGG | 0.381957 | 2_1:+62164338 | Msa0216370:CDS |
| AACCCTCTTGTACAACATTA+AGG | 0.386014 | 2_1:-62165264 | None:intergenic |
| GTTGTTTATGACAGCACATA+TGG | 0.386283 | 2_1:+62165051 | Msa0216370:CDS |
| TTGCTCCCATTCCATCCAAT+TGG | 0.404613 | 2_1:-62165869 | None:intergenic |
| ATGGTGGATTGAAGTTGTAT+TGG | 0.415848 | 2_1:+62165203 | Msa0216370:CDS |
| CAAGTTGTTAAGGAACTTGA+TGG | 0.416575 | 2_1:+62165015 | Msa0216370:CDS |
| TAAGGCAAGGTAGGTGGTGG+TGG | 0.423919 | 2_1:-62165993 | None:intergenic |
| TATTGGGGTATTGCCGCTGA+TGG | 0.425828 | 2_1:+62165220 | Msa0216370:CDS |
| TCCACCAGATCAAGTTGTTA+AGG | 0.433324 | 2_1:+62165005 | Msa0216370:CDS |
| TGGTGGTGGTAGGGTTGGCT+AGG | 0.434280 | 2_1:-62165976 | None:intergenic |
| AGAATTTCTTCAGAAAGCTT+AGG | 0.436367 | 2_1:-62164287 | None:intergenic |
| AGTTCCTTAACAACTTGATC+TGG | 0.448722 | 2_1:-62165009 | None:intergenic |
| ACCATATTGCTTGTTCAGTA+AGG | 0.461779 | 2_1:-62164911 | None:intergenic |
| GAACTTATCAACCTTAAAGT+TGG | 0.462511 | 2_1:-62165809 | None:intergenic |
| GTGAATCCAATTGGATGGAA+TGG | 0.469235 | 2_1:+62165863 | Msa0216370:CDS |
| GTGGATGAGCAAGACCTTTG+TGG | 0.473208 | 2_1:-62164220 | None:intergenic |
| ACGACAAATTCAAAAGGATA+AGG | 0.473678 | 2_1:-62166011 | None:intergenic |
| ATTGCCTTCAACTTGTTCAA+TGG | 0.480350 | 2_1:-62165751 | None:intergenic |
| TAGCTAGGTATTGAATATGA+AGG | 0.482423 | 2_1:-62164133 | None:intergenic |
| GCATCCATTGAACAAGTTGA+AGG | 0.484376 | 2_1:+62165747 | Msa0216370:CDS |
| ACATATACTGCTTGTTCTTG+GGG | 0.491371 | 2_1:+62164872 | Msa0216370:CDS |
| AAAACTAACTTTGTTTAGCT+AGG | 0.491814 | 2_1:-62164148 | None:intergenic |
| CAAGCAATATGGTTTGTCAA+AGG | 0.499784 | 2_1:+62164921 | Msa0216370:CDS |
| ACTCCTTCACTGTCTATCCT+TGG | 0.503821 | 2_1:-62165775 | None:intergenic |
| CAATTGATACCTGCTGGAAA+AGG | 0.504528 | 2_1:-62165304 | None:intergenic |
| AAGCAATATGGTTTGTCAAA+GGG | 0.505741 | 2_1:+62164922 | Msa0216370:CDS |
| TGAATCCAATTGGATGGAAT+GGG | 0.508806 | 2_1:+62165864 | Msa0216370:CDS |
| GGCAAGGTAGGTGGTGGTGG+TGG | 0.510546 | 2_1:-62165990 | None:intergenic |
| TTTATGCAGGGTTCTGATGG+TGG | 0.519132 | 2_1:+62165187 | Msa0216370:intron |
| TGAATCACGACAAATTCAAA+AGG | 0.520647 | 2_1:-62166017 | None:intergenic |
| TCCTTAACAACTTGATCTGG+TGG | 0.527113 | 2_1:-62165006 | None:intergenic |
| GGATAAGGCAAGGTAGGTGG+TGG | 0.529393 | 2_1:-62165996 | None:intergenic |
| TCAAAAGGATAAGGCAAGGT+AGG | 0.535525 | 2_1:-62166002 | None:intergenic |
| TTAAGCCTTTGTATGATGCA+GGG | 0.539695 | 2_1:-62164259 | None:intergenic |
| TGTATGTTTCATAGTGAAGG+AGG | 0.544867 | 2_1:+62165709 | Msa0216370:CDS |
| CTGTTTCCTTCTAAGAAACA+AGG | 0.552626 | 2_1:+62166064 | Msa0216370:three_prime_UTR |
| GAGTTGGTAGTGAATCCAAT+TGG | 0.553165 | 2_1:+62165854 | Msa0216370:CDS |
| TGGTAGTGAATCCAATTGGA+TGG | 0.564629 | 2_1:+62165858 | Msa0216370:CDS |
| ATTGGGGTATTGCCGCTGAT+GGG | 0.568391 | 2_1:+62165221 | Msa0216370:CDS |
| GTCAACAGTATTCCTCGAGT+TGG | 0.573016 | 2_1:+62165838 | Msa0216370:CDS |
| GGGTGTATGTTTCATAGTGA+AGG | 0.585970 | 2_1:+62165706 | Msa0216370:intron |
| GGGCTATTCAGCTCTTCAGG+TGG | 0.589074 | 2_1:-62164239 | None:intergenic |
| ACCTGCTGGAAAAGGAGCAA+AGG | 0.590844 | 2_1:-62165296 | None:intergenic |
| TGACCTTAATGTTGTACAAG+AGG | 0.595852 | 2_1:+62165261 | Msa0216370:CDS |
| GGTGGATTGAAGTTGTATTG+GGG | 0.606006 | 2_1:+62165205 | Msa0216370:CDS |
| GACAGTGAAGGAGTGATGTG+TGG | 0.622107 | 2_1:+62165784 | Msa0216370:CDS |
| ACAGTGAAGGAGTGATGTGT+GGG | 0.629204 | 2_1:+62165785 | Msa0216370:CDS |
| AATAGCCCTGCATCATACAA+AGG | 0.630008 | 2_1:+62164254 | Msa0216370:CDS |
| ATAAGCTTCAATCAGAAACA+TGG | 0.642892 | 2_1:-62164956 | None:intergenic |
| AAAGGATAAGGCAAGGTAGG+TGG | 0.645393 | 2_1:-62165999 | None:intergenic |
| ACAAGTTGAAGGCAATGCCA+AGG | 0.645708 | 2_1:+62165758 | Msa0216370:CDS |
| TATAGGACACTGCGTGACCG+TGG | 0.648457 | 2_1:+62164976 | Msa0216370:CDS |
| TGTGCTGTCATAAACAACAA+AGG | 0.658420 | 2_1:-62165046 | None:intergenic |
| AAATTCAAAAGGATAAGGCA+AGG | 0.664416 | 2_1:-62166006 | None:intergenic |
| ATGCCAAGGATAGACAGTGA+AGG | 0.681425 | 2_1:+62165772 | Msa0216370:CDS |
| GACCTTAATGTTGTACAAGA+GGG | 0.690369 | 2_1:+62165262 | Msa0216370:CDS |
| TTGGATTCACTACCAACTCG+AGG | 0.697059 | 2_1:-62165850 | None:intergenic |
| GATCACAACAGACCCATCAG+CGG | 0.715155 | 2_1:-62165233 | None:intergenic |
| GATCTGGTGGATATGGACCA+CGG | 0.727078 | 2_1:-62164993 | None:intergenic |
| CAGTGAAGGAGTGATGTGTG+GGG | 0.800044 | 2_1:+62165786 | Msa0216370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAACAAAAAAAAAAAAAAA+AGG | - | chr2_1:62164467-62164486 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACTCTAAATA+CGG | - | chr2_1:62165535-62165554 | None:intergenic | 10.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | - | chr2_1:62165347-62165366 | None:intergenic | 15.0% |
| !! | GTAAATACATAAAAACTTTA+CGG | + | chr2_1:62165906-62165925 | Msa0216370:three_prime_UTR | 15.0% |
| !! | AAGTAAATAAATGAAGAATT+CGG | - | chr2_1:62166246-62166265 | None:intergenic | 15.0% |
| !!! | TTCTTCATTTATTTACTTTT+AGG | + | chr2_1:62166248-62166267 | Msa0216370:intron | 15.0% |
| !! | TGAATATGAAGGATTAAAAA+TGG | - | chr2_1:62164125-62164144 | None:intergenic | 20.0% |
| !! | TTGTAGAATCAAAAAAATGT+TGG | + | chr2_1:62164190-62164209 | Msa0216370:exon | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | + | chr2_1:62164589-62164608 | Msa0216370:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | - | chr2_1:62165348-62165367 | None:intergenic | 20.0% |
| !! | AAAACAAAATCTCTTCAAAT+TGG | + | chr2_1:62165357-62165376 | Msa0216370:intron | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | + | chr2_1:62165494-62165513 | Msa0216370:intron | 20.0% |
| !!! | TTTTTAAAATCATTGAATGC+AGG | + | chr2_1:62165685-62165704 | Msa0216370:intron | 20.0% |
| !!! | TTTTAAAATCATTGAATGCA+GGG | + | chr2_1:62165686-62165705 | Msa0216370:intron | 20.0% |
| !!! | TTCATTTATTTACTTTTAGG+AGG | + | chr2_1:62166251-62166270 | Msa0216370:intron | 20.0% |
| !! | AAAACTAACTTTGTTTAGCT+AGG | - | chr2_1:62164151-62164170 | None:intergenic | 25.0% |
| ! | GATTCTACAACAAAATCTTA+AGG | - | chr2_1:62164180-62164199 | None:intergenic | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | - | chr2_1:62164335-62164354 | None:intergenic | 25.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | + | chr2_1:62164338-62164357 | Msa0216370:CDS | 25.0% |
| ! | ACAGAATTCATCCTTATAAA+AGG | - | chr2_1:62164603-62164622 | None:intergenic | 25.0% |
| !! | ACCATATTAAGCTTTTATGT+CGG | - | chr2_1:62164626-62164645 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTAATATGGTGT+AGG | + | chr2_1:62164628-62164647 | Msa0216370:intron | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | - | chr2_1:62165131-62165150 | None:intergenic | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | + | chr2_1:62165174-62165193 | Msa0216370:intron | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | + | chr2_1:62165175-62165194 | Msa0216370:intron | 25.0% |
| AAGGATTAAAAATGGAAGCA+GGG | - | chr2_1:62164117-62164136 | None:intergenic | 30.0% | |
| !! | TAGCTAGGTATTGAATATGA+AGG | - | chr2_1:62164136-62164155 | None:intergenic | 30.0% |
| AGAATTTCTTCAGAAAGCTT+AGG | - | chr2_1:62164290-62164309 | None:intergenic | 30.0% | |
| AACCTTTGATGAACAGAAAA+AGG | - | chr2_1:62164398-62164417 | None:intergenic | 30.0% | |
| TCCGACATAAAAGCTTAATA+TGG | + | chr2_1:62164622-62164641 | Msa0216370:intron | 30.0% | |
| TAACATAATACACATGTCTC+TGG | - | chr2_1:62164668-62164687 | None:intergenic | 30.0% | |
| TCTACTAATCTCCTTCAATT+TGG | - | chr2_1:62164744-62164763 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | - | chr2_1:62164781-62164800 | None:intergenic | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | + | chr2_1:62164841-62164860 | Msa0216370:intron | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | + | chr2_1:62164842-62164861 | Msa0216370:intron | 30.0% |
| ! | AAGCAATATGGTTTGTCAAA+GGG | + | chr2_1:62164922-62164941 | Msa0216370:CDS | 30.0% |
| ATAAGCTTCAATCAGAAACA+TGG | - | chr2_1:62164959-62164978 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | + | chr2_1:62164959-62164978 | Msa0216370:CDS | 30.0% |
| ATTACATCATAACCAACATG+TGG | + | chr2_1:62165384-62165403 | Msa0216370:intron | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | + | chr2_1:62165499-62165518 | Msa0216370:intron | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | + | chr2_1:62165651-62165670 | Msa0216370:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | - | chr2_1:62165812-62165831 | None:intergenic | 30.0% | |
| AAATTCAAAAGGATAAGGCA+AGG | - | chr2_1:62166009-62166028 | None:intergenic | 30.0% | |
| ACGACAAATTCAAAAGGATA+AGG | - | chr2_1:62166014-62166033 | None:intergenic | 30.0% | |
| TGAATCACGACAAATTCAAA+AGG | - | chr2_1:62166020-62166039 | None:intergenic | 30.0% | |
| ! | TGTTAAATTAGTTCTCACCA+AGG | + | chr2_1:62166154-62166173 | Msa0216370:intron | 30.0% |
| ! | GTTGGAAGTATAAATAACCT+TGG | - | chr2_1:62166174-62166193 | None:intergenic | 30.0% |
| AGTTATGCTCATAAAGATGT+TGG | - | chr2_1:62166192-62166211 | None:intergenic | 30.0% | |
| GAAGGATTAAAAATGGAAGC+AGG | - | chr2_1:62164118-62164137 | None:intergenic | 35.0% | |
| ! | ATGTTGGCAATTTTCCACAA+AGG | + | chr2_1:62164206-62164225 | Msa0216370:CDS | 35.0% |
| TTAAGCCTTTGTATGATGCA+GGG | - | chr2_1:62164262-62164281 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | - | chr2_1:62164263-62164282 | None:intergenic | 35.0% | |
| TGAACAGAAAAAGGCTTATC+AGG | - | chr2_1:62164389-62164408 | None:intergenic | 35.0% | |
| ! | AGCCTTTTTCTGTTCATCAA+AGG | + | chr2_1:62164393-62164412 | Msa0216370:CDS | 35.0% |
| CTTAATATGGTGTAGGAGTA+TGG | + | chr2_1:62164635-62164654 | Msa0216370:intron | 35.0% | |
| ATGTTGTTAGTGCTAAGAGA+TGG | + | chr2_1:62164818-62164837 | Msa0216370:intron | 35.0% | |
| !! | CTAAGAGATGGTATTTTTGC+AGG | + | chr2_1:62164830-62164849 | Msa0216370:intron | 35.0% |
| TGACATATACTGCTTGTTCT+TGG | + | chr2_1:62164870-62164889 | Msa0216370:CDS | 35.0% | |
| GACATATACTGCTTGTTCTT+GGG | + | chr2_1:62164871-62164890 | Msa0216370:CDS | 35.0% | |
| ACATATACTGCTTGTTCTTG+GGG | + | chr2_1:62164872-62164891 | Msa0216370:CDS | 35.0% | |
| TCCTTACTGAACAAGCAATA+TGG | + | chr2_1:62164910-62164929 | Msa0216370:CDS | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | - | chr2_1:62164914-62164933 | None:intergenic | 35.0% | |
| ! | CAAGCAATATGGTTTGTCAA+AGG | + | chr2_1:62164921-62164940 | Msa0216370:CDS | 35.0% |
| AGTTCCTTAACAACTTGATC+TGG | - | chr2_1:62165012-62165031 | None:intergenic | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | + | chr2_1:62165015-62165034 | Msa0216370:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | - | chr2_1:62165049-62165068 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | + | chr2_1:62165051-62165070 | Msa0216370:CDS | 35.0% | |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | + | chr2_1:62165184-62165203 | Msa0216370:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | + | chr2_1:62165203-62165222 | Msa0216370:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | + | chr2_1:62165204-62165223 | Msa0216370:CDS | 35.0% |
| TGACCTTAATGTTGTACAAG+AGG | + | chr2_1:62165261-62165280 | Msa0216370:CDS | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | + | chr2_1:62165262-62165281 | Msa0216370:CDS | 35.0% | |
| AACCCTCTTGTACAACATTA+AGG | - | chr2_1:62165267-62165286 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | - | chr2_1:62165576-62165595 | None:intergenic | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | - | chr2_1:62165587-62165606 | None:intergenic | 35.0% | |
| AAGTGTCTGAGTCTCTAATT+TGG | - | chr2_1:62165636-62165655 | None:intergenic | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | + | chr2_1:62165709-62165728 | Msa0216370:CDS | 35.0% | |
| ! | ATTGCCTTCAACTTGTTCAA+TGG | - | chr2_1:62165754-62165773 | None:intergenic | 35.0% |
| TGAATCCAATTGGATGGAAT+GGG | + | chr2_1:62165864-62165883 | Msa0216370:CDS | 35.0% | |
| ! | CTTGTTTCTTAGAAGGAAAC+AGG | - | chr2_1:62166066-62166085 | None:intergenic | 35.0% |
| ! | CTGTTTCCTTCTAAGAAACA+AGG | + | chr2_1:62166064-62166083 | Msa0216370:three_prime_UTR | 35.0% |
| ! | TCACTACCTTGTTTCTTAGA+AGG | - | chr2_1:62166073-62166092 | None:intergenic | 35.0% |
| !! | ACAAGGTAGTGAAGTGTTTT+TGG | + | chr2_1:62166081-62166100 | Msa0216370:three_prime_UTR | 35.0% |
| !! | CAAGGTAGTGAAGTGTTTTT+GGG | + | chr2_1:62166082-62166101 | Msa0216370:three_prime_UTR | 35.0% |
| TGGTTATCGTGGAATATTGA+GGG | - | chr2_1:62166317-62166336 | None:intergenic | 35.0% | |
| ! | TACACATGTCATCCGTATTT+TGG | - | chr2_1:62166361-62166380 | None:intergenic | 35.0% |
| AATAGCCCTGCATCATACAA+AGG | + | chr2_1:62164254-62164273 | Msa0216370:CDS | 40.0% | |
| GATGTTGCTGACCAAATTGA+AGG | + | chr2_1:62164730-62164749 | Msa0216370:intron | 40.0% | |
| GTTTGCTTGAGCCAATAACA+TGG | + | chr2_1:62164767-62164786 | Msa0216370:intron | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | - | chr2_1:62165003-62165022 | None:intergenic | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | + | chr2_1:62165005-62165024 | Msa0216370:CDS | 40.0% |
| TCCTTAACAACTTGATCTGG+TGG | - | chr2_1:62165009-62165028 | None:intergenic | 40.0% | |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | + | chr2_1:62165071-62165090 | Msa0216370:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | + | chr2_1:62165205-62165224 | Msa0216370:CDS | 40.0% |
| CAATTGATACCTGCTGGAAA+AGG | - | chr2_1:62165307-62165326 | None:intergenic | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | - | chr2_1:62165313-62165332 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | + | chr2_1:62165388-62165407 | Msa0216370:intron | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | - | chr2_1:62165430-62165449 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | + | chr2_1:62165706-62165725 | Msa0216370:intron | 40.0% | |
| ! | GCATCCATTGAACAAGTTGA+AGG | + | chr2_1:62165747-62165766 | Msa0216370:CDS | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | + | chr2_1:62165854-62165873 | Msa0216370:CDS | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | + | chr2_1:62165858-62165877 | Msa0216370:CDS | 40.0% |
| GTGAATCCAATTGGATGGAA+TGG | + | chr2_1:62165863-62165882 | Msa0216370:CDS | 40.0% | |
| TCAAAAGGATAAGGCAAGGT+AGG | - | chr2_1:62166005-62166024 | None:intergenic | 40.0% | |
| GTGGTTATCGTGGAATATTG+AGG | - | chr2_1:62166318-62166337 | None:intergenic | 40.0% | |
| ! | ATTTTACAGGGTGGTTATCG+TGG | - | chr2_1:62166328-62166347 | None:intergenic | 40.0% |
| CACCCTGTAAAATCTATTGC+CGG | + | chr2_1:62166335-62166354 | Msa0216370:intron | 40.0% | |
| ATCTATTGCCGGCCAAAATA+CGG | + | chr2_1:62166346-62166365 | Msa0216370:intron | 40.0% | |
| ! | TTTATGCAGGGTTCTGATGG+TGG | + | chr2_1:62165187-62165206 | Msa0216370:intron | 45.0% |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | + | chr2_1:62165758-62165777 | Msa0216370:CDS | 45.0% |
| ATGCCAAGGATAGACAGTGA+AGG | + | chr2_1:62165772-62165791 | Msa0216370:CDS | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | - | chr2_1:62165778-62165797 | None:intergenic | 45.0% | |
| ACAGTGAAGGAGTGATGTGT+GGG | + | chr2_1:62165785-62165804 | Msa0216370:CDS | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | + | chr2_1:62165838-62165857 | Msa0216370:CDS | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | - | chr2_1:62165853-62165872 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | - | chr2_1:62165872-62165891 | None:intergenic | 45.0% | |
| AAAGGATAAGGCAAGGTAGG+TGG | - | chr2_1:62166002-62166021 | None:intergenic | 45.0% | |
| ! | CGGCAATAGATTTTACAGGG+TGG | - | chr2_1:62166337-62166356 | None:intergenic | 45.0% |
| ! | GGCCGGCAATAGATTTTACA+GGG | - | chr2_1:62166340-62166359 | None:intergenic | 45.0% |
| ! | TGGCCGGCAATAGATTTTAC+AGG | - | chr2_1:62166341-62166360 | None:intergenic | 45.0% |
| !!! | CATGTCATCCGTATTTTGGC+CGG | - | chr2_1:62166357-62166376 | None:intergenic | 45.0% |
| GTGGATGAGCAAGACCTTTG+TGG | - | chr2_1:62164223-62164242 | None:intergenic | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | - | chr2_1:62164996-62165015 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | + | chr2_1:62165220-62165239 | Msa0216370:CDS | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | + | chr2_1:62165221-62165240 | Msa0216370:CDS | 50.0% |
| GATCACAACAGACCCATCAG+CGG | - | chr2_1:62165236-62165255 | None:intergenic | 50.0% | |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | + | chr2_1:62165295-62165314 | Msa0216370:CDS | 50.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | - | chr2_1:62165299-62165318 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | + | chr2_1:62165411-62165430 | Msa0216370:intron | 50.0% | |
| !! | TCCCTTGGTGTCTTACCACT+CGG | - | chr2_1:62165415-62165434 | None:intergenic | 50.0% |
| GACAGTGAAGGAGTGATGTG+TGG | + | chr2_1:62165784-62165803 | Msa0216370:CDS | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | + | chr2_1:62165786-62165805 | Msa0216370:CDS | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | + | chr2_1:62165798-62165817 | Msa0216370:CDS | 50.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | - | chr2_1:62164242-62164261 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | - | chr2_1:62164245-62164264 | None:intergenic | 55.0% | |
| TATAGGACACTGCGTGACCG+TGG | + | chr2_1:62164976-62164995 | Msa0216370:CDS | 55.0% | |
| CACTCGGACCAACCACATGT+TGG | - | chr2_1:62165399-62165418 | None:intergenic | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | + | chr2_1:62165397-62165416 | Msa0216370:intron | 55.0% |
| GTCCGAGTGGTAAGACACCA+AGG | + | chr2_1:62165410-62165429 | Msa0216370:intron | 55.0% | |
| ! | TAAGGCAAGGTAGGTGGTGG+TGG | - | chr2_1:62165996-62166015 | None:intergenic | 55.0% |
| GGATAAGGCAAGGTAGGTGG+TGG | - | chr2_1:62165999-62166018 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTAGGGTTGGCT+AGG | - | chr2_1:62165979-62165998 | None:intergenic | 60.0% |
| !! | GGTAGGTGGTGGTGGTGGTA+GGG | - | chr2_1:62165988-62166007 | None:intergenic | 60.0% |
| !! | AGGTAGGTGGTGGTGGTGGT+AGG | - | chr2_1:62165989-62166008 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTAGGGT+TGG | - | chr2_1:62165984-62166003 | None:intergenic | 65.0% |
| !! | GGCAAGGTAGGTGGTGGTGG+TGG | - | chr2_1:62165993-62166012 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 62164096 | 62166421 | 62164096 | ID=Msa0216370;Name=Msa0216370 |
| chr2_1 | mRNA | 62164096 | 62166421 | 62164096 | ID=Msa0216370-mRNA-1;Parent=Msa0216370;Name=Msa0216370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=110|1|1|1|0.75|0.6|5|270|253 |
| chr2_1 | exon | 62164096 | 62164414 | 62164096 | ID=Msa0216370-mRNA-1:exon:17196;Parent=Msa0216370-mRNA-1 |
| chr2_1 | exon | 62164852 | 62165092 | 62164852 | ID=Msa0216370-mRNA-1:exon:17197;Parent=Msa0216370-mRNA-1 |
| chr2_1 | exon | 62165196 | 62165316 | 62165196 | ID=Msa0216370-mRNA-1:exon:17198;Parent=Msa0216370-mRNA-1 |
| chr2_1 | exon | 62165707 | 62166133 | 62165707 | ID=Msa0216370-mRNA-1:exon:17199;Parent=Msa0216370-mRNA-1 |
| chr2_1 | exon | 62166388 | 62166421 | 62166388 | ID=Msa0216370-mRNA-1:exon:17200;Parent=Msa0216370-mRNA-1 |
| chr2_1 | five_prime_UTR | 62164096 | 62164205 | 62164096 | ID=Msa0216370-mRNA-1:five_prime_utr;Parent=Msa0216370-mRNA-1 |
| chr2_1 | CDS | 62164206 | 62164414 | 62164206 | ID=Msa0216370-mRNA-1:cds;Parent=Msa0216370-mRNA-1 |
| chr2_1 | CDS | 62164852 | 62165092 | 62164852 | ID=Msa0216370-mRNA-1:cds;Parent=Msa0216370-mRNA-1 |
| chr2_1 | CDS | 62165196 | 62165316 | 62165196 | ID=Msa0216370-mRNA-1:cds;Parent=Msa0216370-mRNA-1 |
| chr2_1 | CDS | 62165707 | 62165897 | 62165707 | ID=Msa0216370-mRNA-1:cds;Parent=Msa0216370-mRNA-1 |
| chr2_1 | three_prime_UTR | 62165898 | 62166133 | 62165898 | ID=Msa0216370-mRNA-1:three_prime_utr;Parent=Msa0216370-mRNA-1 |
| chr2_1 | three_prime_UTR | 62166388 | 62166421 | 62166388 | ID=Msa0216370-mRNA-1:three_prime_utr;Parent=Msa0216370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
