Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269440 | XP_003597790.2 | 93.407 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269440 | sp|Q9M8L2|FBK30_ARATH | 47.709 | 371 | 170 | 6 | 1 | 364 | 1 | 354 | 1.90e-120 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269440 | G7II60 | 93.407 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 0.0 | 703 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0097570 | Msa1269440 | 0.806649 | 7.425870e-50 | -8.615850e-47 |
| Msa0686350 | Msa1269440 | -0.810674 | 1.025071e-50 | -8.615850e-47 |
| Msa0712930 | Msa1269440 | 0.824553 | 7.582564e-54 | -8.615850e-47 |
| Msa0758750 | Msa1269440 | 0.820915 | 5.330324e-53 | -8.615850e-47 |
| Msa0776560 | Msa1269440 | 0.802595 | 5.206380e-49 | -8.615850e-47 |
| Msa0783680 | Msa1269440 | 0.820443 | 6.842689e-53 | -8.615850e-47 |
| Msa0800530 | Msa1269440 | 0.814201 | 1.738016e-51 | -8.615850e-47 |
| Msa0145430 | Msa1269440 | 0.812884 | 3.385996e-51 | -8.615850e-47 |
| Msa0186540 | Msa1269440 | 0.810298 | 1.235410e-50 | -8.615850e-47 |
| Msa0216370 | Msa1269440 | 0.806943 | 6.435454e-50 | -8.615850e-47 |
| Msa0225420 | Msa1269440 | 0.934271 | 5.230406e-96 | -8.615850e-47 |
| Msa0225720 | Msa1269440 | 0.944676 | 1.258168e-103 | -8.615850e-47 |
| Msa1269440 | Msa1335090 | 0.826639 | 2.429680e-54 | -8.615850e-47 |
| Msa1269440 | Msa1339930 | -0.817174 | 3.780789e-52 | -8.615850e-47 |
| Msa1269440 | Msa1422380 | 0.943685 | 7.703642e-103 | -8.615850e-47 |
| Msa1269440 | Msa1422480 | 0.801651 | 8.142112e-49 | -8.615850e-47 |
| Msa1269440 | Msa1452070 | -0.808219 | 3.448595e-50 | -8.615850e-47 |
| Msa1269440 | Msa1456490 | 0.804360 | 2.242650e-49 | -8.615850e-47 |
| Msa0398400 | Msa1269440 | 0.814209 | 1.730816e-51 | -8.615850e-47 |
| Msa0256570 | Msa1269440 | 0.884347 | 2.072020e-71 | -8.615850e-47 |
| Msa0295710 | Msa1269440 | 0.882503 | 9.861675e-71 | -8.615850e-47 |
| Msa0334300 | Msa1269440 | 0.883458 | 4.411326e-71 | -8.615850e-47 |
| Msa1173150 | Msa1269440 | 0.802813 | 4.694713e-49 | -8.615850e-47 |
| Msa0525200 | Msa1269440 | 0.802988 | 4.319166e-49 | -8.615850e-47 |
| Msa0576560 | Msa1269440 | 0.836122 | 1.125834e-56 | -8.615850e-47 |
| Msa0578410 | Msa1269440 | 0.811445 | 6.977797e-51 | -8.615850e-47 |
| Msa0578460 | Msa1269440 | 0.805029 | 1.626113e-49 | -8.615850e-47 |
| Msa0859120 | Msa1269440 | 0.840548 | 8.137766e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269440 | MtrunA17_Chr2g0332031 | 93.407 | 364 | 24 | 0 | 1 | 364 | 1 | 364 | 0.0 | 703 |
| Msa1269440 | MtrunA17_Chr4g0004201 | 59.890 | 364 | 140 | 2 | 1 | 364 | 3 | 360 | 1.98e-161 | 456 |
| Msa1269440 | MtrunA17_Chr2g0332021 | 87.402 | 127 | 16 | 0 | 171 | 297 | 1 | 127 | 5.90e-77 | 233 |
| Msa1269440 | MtrunA17_Chr8g0378571 | 36.141 | 368 | 200 | 9 | 1 | 364 | 5 | 341 | 6.81e-60 | 196 |
| Msa1269440 | MtrunA17_Chr7g0260051 | 27.239 | 268 | 156 | 9 | 2 | 261 | 3 | 239 | 4.22e-19 | 87.4 |
| Msa1269440 | MtrunA17_Chr4g0060541 | 23.298 | 382 | 231 | 11 | 3 | 362 | 31 | 372 | 6.28e-14 | 72.4 |
| Msa1269440 | MtrunA17_Chr8g0378511 | 29.268 | 205 | 124 | 7 | 3 | 205 | 77 | 262 | 6.44e-14 | 72.8 |
| Msa1269440 | MtrunA17_Chr4g0011151 | 25.283 | 265 | 152 | 9 | 3 | 260 | 102 | 327 | 1.91e-13 | 71.2 |
| Msa1269440 | MtrunA17_Chr4g0011221 | 27.203 | 261 | 152 | 10 | 3 | 260 | 102 | 327 | 4.43e-13 | 70.1 |
| Msa1269440 | MtrunA17_Chr4g0011171 | 26.820 | 261 | 153 | 10 | 3 | 260 | 102 | 327 | 7.63e-13 | 69.3 |
| Msa1269440 | MtrunA17_Chr4g0063531 | 25.347 | 288 | 172 | 11 | 3 | 277 | 67 | 324 | 3.73e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269440 | AT1G80440.1 | 47.709 | 371 | 170 | 6 | 1 | 364 | 1 | 354 | 1.93e-121 | 355 |
| Msa1269440 | AT1G15670.1 | 48.501 | 367 | 178 | 5 | 1 | 364 | 1 | 359 | 8.05e-120 | 351 |
| Msa1269440 | AT3G59940.1 | 29.177 | 401 | 228 | 10 | 2 | 353 | 14 | 407 | 7.75e-42 | 151 |
| Msa1269440 | AT2G44130.1 | 33.333 | 291 | 157 | 6 | 2 | 268 | 18 | 295 | 9.99e-42 | 151 |
| Msa1269440 | AT3G63220.1 | 25.301 | 332 | 196 | 9 | 3 | 323 | 4 | 294 | 1.85e-19 | 88.6 |
| Msa1269440 | AT3G63220.3 | 25.301 | 332 | 196 | 9 | 3 | 323 | 11 | 301 | 2.40e-19 | 88.6 |
| Msa1269440 | AT3G63220.2 | 25.301 | 332 | 196 | 9 | 3 | 323 | 11 | 301 | 2.40e-19 | 88.6 |
| Msa1269440 | AT2G02870.2 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.46e-15 | 77.0 |
| Msa1269440 | AT2G02870.3 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.46e-15 | 77.0 |
| Msa1269440 | AT2G02870.1 | 24.727 | 275 | 169 | 9 | 3 | 276 | 117 | 354 | 3.46e-15 | 77.0 |
| Msa1269440 | AT1G14330.1 | 27.027 | 259 | 152 | 10 | 3 | 258 | 94 | 318 | 2.99e-14 | 73.9 |
| Msa1269440 | AT1G67480.3 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 3.26e-12 | 67.8 |
| Msa1269440 | AT1G67480.1 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 3.26e-12 | 67.8 |
| Msa1269440 | AT1G67480.2 | 28.696 | 230 | 138 | 6 | 3 | 230 | 39 | 244 | 3.26e-12 | 67.8 |
Find 125 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTATGGAGTTGATTTC+AGG | 0.182172 | 8_3:+2692824 | None:intergenic |
| TTGATTGGGTCTAGTGGGTT+TGG | 0.258847 | 8_3:+2693790 | Msa1269440:CDS |
| GGGTAACCCTTCACTTAATT+CGG | 0.272688 | 8_3:-2693134 | None:intergenic |
| TATCTGCTACGTGGCGTTGC+GGG | 0.273171 | 8_3:+2693260 | Msa1269440:CDS |
| TGGAAACTGAAACAGGTATT+TGG | 0.276490 | 8_3:+2693092 | Msa1269440:CDS |
| TTTGAAGCTTTCCATGAATC+AGG | 0.295391 | 8_3:-2693214 | None:intergenic |
| AGTTTCATACCAGGAATTTC+CGG | 0.301498 | 8_3:+2692883 | Msa1269440:CDS |
| TGGGTTTGGAGAACCTTATA+TGG | 0.316034 | 8_3:+2693804 | Msa1269440:CDS |
| CACTCTCGTGCTATGTCTTC+TGG | 0.327599 | 8_3:-2692851 | None:intergenic |
| TCACGCTCCCTCGCCATATC+AGG | 0.334734 | 8_3:-2693433 | None:intergenic |
| AATACATTTAGTTTATAAAT+CGG | 0.342579 | 8_3:-2693070 | None:intergenic |
| TACTCCAAACACCATTCTTC+AGG | 0.353583 | 8_3:-2693840 | None:intergenic |
| TCCAACACAAAGCCCATATA+AGG | 0.360295 | 8_3:-2693817 | None:intergenic |
| AGGGTATGATCTAGTTGTTA+TGG | 0.362184 | 8_3:+2693180 | Msa1269440:CDS |
| TGGCTACCGCCGGAAATTCC+TGG | 0.381513 | 8_3:-2692892 | None:intergenic |
| CGCCGGAGTTTCGCCGTGTC+CGG | 0.389061 | 8_3:+2692948 | Msa1269440:CDS |
| GATTTATAAACTAAATGTAT+TGG | 0.393923 | 8_3:+2693072 | Msa1269440:CDS |
| AGACATAGCACGAGAGTGTT+TGG | 0.398695 | 8_3:+2692856 | Msa1269440:CDS |
| GCAGATGCATTGTTATTGAT+TGG | 0.405993 | 8_3:+2693775 | Msa1269440:CDS |
| TTCACCGGCCACGTTCAATC+TGG | 0.407052 | 8_3:+2693883 | Msa1269440:CDS |
| TGTTGCTTGTGTGGGAGCTT+GGG | 0.410270 | 8_3:+2693753 | Msa1269440:CDS |
| GGGTATGATCTAGTTGTTAT+GGG | 0.418612 | 8_3:+2693181 | Msa1269440:CDS |
| CAGATGCATTGTTATTGATT+GGG | 0.419195 | 8_3:+2693776 | Msa1269440:CDS |
| GTGGATCCCGCTTCCTGATA+TGG | 0.419518 | 8_3:+2693420 | Msa1269440:CDS |
| GTGGAGGTGGGGTCCGGTCG+AGG | 0.421615 | 8_3:+2693579 | Msa1269440:CDS |
| GAGAAGAATGTACATGTGTA+AGG | 0.422768 | 8_3:+2693660 | Msa1269440:CDS |
| ATACATTTAGTTTATAAATC+GGG | 0.423905 | 8_3:-2693069 | None:intergenic |
| TCGATGTAGCCACGTGGAGG+TGG | 0.423970 | 8_3:+2693566 | Msa1269440:CDS |
| GGTAACCCTTCACTTAATTC+GGG | 0.425963 | 8_3:-2693133 | None:intergenic |
| AGGTGGTGGCGAAGGTGCCT+AGG | 0.429241 | 8_3:+2693719 | Msa1269440:CDS |
| GAGGATGGGACCCTGATTCA+TGG | 0.430085 | 8_3:+2693203 | Msa1269440:CDS |
| GATGATGTGGTGGCATTGGA+TGG | 0.436126 | 8_3:+2693685 | Msa1269440:CDS |
| TTGTGTGGATGGTTGTGAAT+TGG | 0.440798 | 8_3:+2693636 | Msa1269440:CDS |
| TTCATGGAAAGCTTCAAATT+CGG | 0.444403 | 8_3:+2693219 | Msa1269440:CDS |
| ACCTTATATGGGCTTTGTGT+TGG | 0.447831 | 8_3:+2693816 | Msa1269440:CDS |
| TGTTATTGATTGGGTCTAGT+GGG | 0.455627 | 8_3:+2693785 | Msa1269440:CDS |
| AATGTATTGGAAACTGAAAC+AGG | 0.458468 | 8_3:+2693085 | Msa1269440:CDS |
| ATGTTGCTTGTGTGGGAGCT+TGG | 0.459885 | 8_3:+2693752 | Msa1269440:CDS |
| GGGTTTGGAGAACCTTATAT+GGG | 0.462959 | 8_3:+2693805 | Msa1269440:CDS |
| GCAGGGCCCACCAGGCATAT+CGG | 0.463055 | 8_3:-2693284 | None:intergenic |
| CGTTGCGGGGCCGATATGCC+TGG | 0.463058 | 8_3:+2693274 | Msa1269440:CDS |
| CGCCGTGTCCGGAGGAGTAC+AGG | 0.466611 | 8_3:+2692959 | Msa1269440:CDS |
| CAACCATCCACACAAGTCCT+TGG | 0.468884 | 8_3:-2693628 | None:intergenic |
| TGGACCTGAAGAATGGTGTT+TGG | 0.471703 | 8_3:+2693836 | Msa1269440:CDS |
| GGGTGATGATGTGGTGGCAT+TGG | 0.471752 | 8_3:+2693681 | Msa1269440:CDS |
| CGTGCCAGAGCCATTGTCTC+CGG | 0.476636 | 8_3:-2693479 | None:intergenic |
| CGATGTAGCCACGTGGAGGT+GGG | 0.477914 | 8_3:+2693567 | Msa1269440:CDS |
| AGCCACGTGGAGGTGGGGTC+CGG | 0.487081 | 8_3:+2693573 | Msa1269440:CDS |
| ATCTAGTTGTTATGGGAGGA+TGG | 0.491431 | 8_3:+2693188 | Msa1269440:CDS |
| TGTAGCTTTAGCCAATAAAC+CGG | 0.493397 | 8_3:-2693041 | None:intergenic |
| TTGCTCACGGTGGCTACCGC+CGG | 0.494147 | 8_3:-2692902 | None:intergenic |
| TTTGTCAAATTGCGGGTGTA+GGG | 0.495373 | 8_3:+2693161 | Msa1269440:CDS |
| CGAAGGTGCCTAGGGAGATA+AGG | 0.500530 | 8_3:+2693728 | Msa1269440:CDS |
| TGCATCAGATCATGAAAGAA+TGG | 0.501033 | 8_3:+2693321 | Msa1269440:CDS |
| TTTGTGTTGGACCTGAAGAA+TGG | 0.506335 | 8_3:+2693829 | Msa1269440:CDS |
| TGTTTGCCACCCTTTGCTCA+CGG | 0.517498 | 8_3:-2692915 | None:intergenic |
| GGTGGTGGCGAAGGTGCCTA+GGG | 0.518802 | 8_3:+2693720 | Msa1269440:CDS |
| GAAAGAATGGTCTATGTGGC+AGG | 0.519321 | 8_3:+2693334 | Msa1269440:CDS |
| ATCTGCTACGTGGCGTTGCG+GGG | 0.523853 | 8_3:+2693261 | Msa1269440:CDS |
| TCACTTAATTCGGGTCCCAT+TGG | 0.527061 | 8_3:-2693124 | None:intergenic |
| CGGTAGCCACCGTGAGCAAA+GGG | 0.527349 | 8_3:+2692906 | Msa1269440:CDS |
| TTGTTATTGATTGGGTCTAG+TGG | 0.527443 | 8_3:+2693784 | Msa1269440:CDS |
| CCCTCGCCATATCAGGAAGC+GGG | 0.530716 | 8_3:-2693426 | None:intergenic |
| TGTGCCGGAGACAATGGCTC+TGG | 0.531010 | 8_3:+2693475 | Msa1269440:CDS |
| GCGGTAGCCACCGTGAGCAA+AGG | 0.533392 | 8_3:+2692905 | Msa1269440:CDS |
| AGTTGTTGGTGGATATTGTA+CGG | 0.536411 | 8_3:+2693507 | Msa1269440:CDS |
| ATTTGGAGCGAGTTACCAAT+GGG | 0.540800 | 8_3:+2693109 | Msa1269440:CDS |
| TGGTGACACGTGGAAGGTGG+TGG | 0.543700 | 8_3:+2693705 | Msa1269440:CDS |
| GGCACGATCAAAGTTGTTGG+TGG | 0.544929 | 8_3:+2693496 | Msa1269440:CDS |
| TATTTGGAGCGAGTTACCAA+TGG | 0.546070 | 8_3:+2693108 | Msa1269440:CDS |
| TTATCTGCTACGTGGCGTTG+CGG | 0.546414 | 8_3:+2693259 | Msa1269440:CDS |
| ACCCGCAATTTGACAAAACA+AGG | 0.548302 | 8_3:-2693155 | None:intergenic |
| GCAACCAGATTGAACGTGGC+CGG | 0.553033 | 8_3:-2693887 | None:intergenic |
| TCCCTCGCCATATCAGGAAG+CGG | 0.557334 | 8_3:-2693427 | None:intergenic |
| CGGAGTTTCGCCGTGTCCGG+AGG | 0.560636 | 8_3:+2692951 | Msa1269440:CDS |
| CACGTGGAAGGTGGTGGCGA+AGG | 0.560862 | 8_3:+2693711 | Msa1269440:CDS |
| GAGCATGACCTGTACTCCTC+CGG | 0.561000 | 8_3:-2692967 | None:intergenic |
| TCCCGCTTCCTGATATGGCG+AGG | 0.561759 | 8_3:+2693425 | Msa1269440:CDS |
| TTGAAGCTTTCCATGAATCA+GGG | 0.562384 | 8_3:-2693213 | None:intergenic |
| GATAAGGAATGTTGCTTGTG+TGG | 0.563323 | 8_3:+2693744 | Msa1269440:CDS |
| CTCCGGACACGGCGAAACTC+CGG | 0.563978 | 8_3:-2692950 | None:intergenic |
| TCTGGCACGATCAAAGTTGT+TGG | 0.564275 | 8_3:+2693493 | Msa1269440:CDS |
| ATTTGGACTGAACCGTGACT+AGG | 0.569932 | 8_3:-2692997 | None:intergenic |
| TGGATGATGCCACATGTCCA+AGG | 0.571672 | 8_3:+2693611 | Msa1269440:CDS |
| GATGTAGCCACGTGGAGGTG+GGG | 0.572404 | 8_3:+2693568 | Msa1269440:CDS |
| AGAAGAATGTACATGTGTAA+GGG | 0.581931 | 8_3:+2693661 | Msa1269440:CDS |
| TCTAGTTGTTATGGGAGGAT+GGG | 0.587902 | 8_3:+2693189 | Msa1269440:CDS |
| GCAACATTCCTTATCTCCCT+AGG | 0.592170 | 8_3:-2693736 | None:intergenic |
| GCGGGGCCGATATGCCTGGT+GGG | 0.592603 | 8_3:+2693278 | Msa1269440:CDS |
| GGATATTGTACGGAGATGCA+AGG | 0.594849 | 8_3:+2693517 | Msa1269440:CDS |
| CACACAAGTCCTTGGACATG+TGG | 0.595115 | 8_3:-2693620 | None:intergenic |
| TGCGGGGCCGATATGCCTGG+TGG | 0.595490 | 8_3:+2693277 | Msa1269440:CDS |
| TGCTCAGAAAATCCTAGTCA+CGG | 0.599471 | 8_3:+2692985 | Msa1269440:CDS |
| CCCGCTTCCTGATATGGCGA+GGG | 0.599930 | 8_3:+2693426 | Msa1269440:CDS |
| TGTCCAAGGACTTGTGTGGA+TGG | 0.600952 | 8_3:+2693625 | Msa1269440:CDS |
| GAAAACCCAGAAAATTTCAC+CGG | 0.601148 | 8_3:+2693868 | Msa1269440:CDS |
| GACCTGTACTCCTCCGGACA+CGG | 0.612366 | 8_3:-2692961 | None:intergenic |
| ATTGGATGGTGACACGTGGA+AGG | 0.617577 | 8_3:+2693699 | Msa1269440:CDS |
| GAGGTGGGGTCCGGTCGAGG+AGG | 0.618236 | 8_3:+2693582 | Msa1269440:CDS |
| ATGGGACCCGAATTAAGTGA+AGG | 0.619213 | 8_3:+2693127 | Msa1269440:CDS |
| ATAAGGAATGTTGCTTGTGT+GGG | 0.622737 | 8_3:+2693745 | Msa1269440:CDS |
| TCATGAAAGAATGGTCTATG+TGG | 0.631561 | 8_3:+2693330 | Msa1269440:CDS |
| GATATTGTACGGAGATGCAA+GGG | 0.633940 | 8_3:+2693518 | Msa1269440:CDS |
| GGATGGTGACACGTGGAAGG+TGG | 0.634958 | 8_3:+2693702 | Msa1269440:CDS |
| TATGATCTAGTTGTTATGGG+AGG | 0.636400 | 8_3:+2693184 | Msa1269440:CDS |
| GCAAACAGAGATTCAAACGC+CGG | 0.637123 | 8_3:+2692931 | Msa1269440:CDS |
| TGGGACCCGAATTAAGTGAA+GGG | 0.640598 | 8_3:+2693128 | Msa1269440:CDS |
| CATGTGTAAGGGTGATGATG+TGG | 0.641473 | 8_3:+2693672 | Msa1269440:CDS |
| GTCAGCATTTGCTTACGATG+TGG | 0.642705 | 8_3:+2693387 | Msa1269440:CDS |
| TAGCCACCGTGAGCAAAGGG+TGG | 0.650702 | 8_3:+2692909 | Msa1269440:CDS |
| TTTGGTTCGAGTTTCATACC+AGG | 0.651758 | 8_3:+2692874 | Msa1269440:CDS |
| GACCGGACCCCACCTCCACG+TGG | 0.662176 | 8_3:-2693575 | None:intergenic |
| GCGATTCGAACGTAGTGCTG+AGG | 0.664187 | 8_3:+2693540 | Msa1269440:CDS |
| ACGATGTGGCAAATGATGTG+TGG | 0.666045 | 8_3:+2693401 | Msa1269440:CDS |
| AAAAGCAACCAGATTGAACG+TGG | 0.667532 | 8_3:-2693891 | None:intergenic |
| GTGTAAGGGTGATGATGTGG+TGG | 0.677538 | 8_3:+2693675 | Msa1269440:CDS |
| AGAATGGTCTATGTGGCAGG+AGG | 0.679340 | 8_3:+2693337 | Msa1269440:CDS |
| CCCGCAATTTGACAAAACAA+GGG | 0.679482 | 8_3:-2693154 | None:intergenic |
| TTGCCACCCTTTGCTCACGG+TGG | 0.683953 | 8_3:-2692912 | None:intergenic |
| AGTTCGATGTAGCCACGTGG+AGG | 0.685810 | 8_3:+2693563 | Msa1269440:CDS |
| TTCATACCAGGAATTTCCGG+CGG | 0.694230 | 8_3:+2692886 | Msa1269440:CDS |
| TGGCATTGGATGGTGACACG+TGG | 0.697013 | 8_3:+2693695 | Msa1269440:CDS |
| TGTGGCAGGAGGACATGACG+AGG | 0.708701 | 8_3:+2693348 | Msa1269440:CDS |
| AGGAGTTCGATGTAGCCACG+TGG | 0.736829 | 8_3:+2693560 | Msa1269440:CDS |
| CACATGTCCAAGGACTTGTG+TGG | 0.739846 | 8_3:+2693621 | Msa1269440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACATTTAGTTTATAAAT+CGG | - | chr8_3:2693073-2693092 | None:intergenic | 10.0% |
| !!! | AATACATTTAGTTTATAAAT+CGG | - | chr8_3:2693073-2693092 | None:intergenic | 10.0% |
| !!! | ATACATTTAGTTTATAAATC+GGG | - | chr8_3:2693072-2693091 | None:intergenic | 15.0% |
| !! | GATTTATAAACTAAATGTAT+TGG | + | chr8_3:2693072-2693091 | Msa1269440:CDS | 15.0% |
| !!! | ATACATTTAGTTTATAAATC+GGG | - | chr8_3:2693072-2693091 | None:intergenic | 15.0% |
| !! | GATTTATAAACTAAATGTAT+TGG | + | chr8_3:2693072-2693091 | Msa1269440:CDS | 15.0% |
| !!! | GCTTTTTTCTGAATCAAATT+TGG | - | chr8_3:2693017-2693036 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTATCTGCTACG+TGG | + | chr8_3:2693251-2693270 | Msa1269440:CDS | 25.0% |
| !!! | GCTTTTTTCTGAATCAAATT+TGG | - | chr8_3:2693017-2693036 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTATCTGCTACG+TGG | + | chr8_3:2693251-2693270 | Msa1269440:CDS | 25.0% |
| GATTCAGAAAAAAGCAAAAC+CGG | + | chr8_3:2693022-2693041 | Msa1269440:CDS | 30.0% | |
| ! | AAAAAGCAAAACCGGTTTAT+TGG | + | chr8_3:2693030-2693049 | Msa1269440:CDS | 30.0% |
| AATGTATTGGAAACTGAAAC+AGG | + | chr8_3:2693085-2693104 | Msa1269440:CDS | 30.0% | |
| TTCATGGAAAGCTTCAAATT+CGG | + | chr8_3:2693219-2693238 | Msa1269440:CDS | 30.0% | |
| AGAAGAATGTACATGTGTAA+GGG | + | chr8_3:2693661-2693680 | Msa1269440:CDS | 30.0% | |
| ! | CAGATGCATTGTTATTGATT+GGG | + | chr8_3:2693776-2693795 | Msa1269440:CDS | 30.0% |
| GATTCAGAAAAAAGCAAAAC+CGG | + | chr8_3:2693022-2693041 | Msa1269440:CDS | 30.0% | |
| ! | AAAAAGCAAAACCGGTTTAT+TGG | + | chr8_3:2693030-2693049 | Msa1269440:CDS | 30.0% |
| AATGTATTGGAAACTGAAAC+AGG | + | chr8_3:2693085-2693104 | Msa1269440:CDS | 30.0% | |
| TTCATGGAAAGCTTCAAATT+CGG | + | chr8_3:2693219-2693238 | Msa1269440:CDS | 30.0% | |
| AGAAGAATGTACATGTGTAA+GGG | + | chr8_3:2693661-2693680 | Msa1269440:CDS | 30.0% | |
| ! | CAGATGCATTGTTATTGATT+GGG | + | chr8_3:2693776-2693795 | Msa1269440:CDS | 30.0% |
| AGTTTCATACCAGGAATTTC+CGG | + | chr8_3:2692883-2692902 | Msa1269440:CDS | 35.0% | |
| !! | TGTAGCTTTAGCCAATAAAC+CGG | - | chr8_3:2693044-2693063 | None:intergenic | 35.0% |
| TGGAAACTGAAACAGGTATT+TGG | + | chr8_3:2693092-2693111 | Msa1269440:CDS | 35.0% | |
| !!! | ACCCTTGTTTTGTCAAATTG+CGG | + | chr8_3:2693153-2693172 | Msa1269440:CDS | 35.0% |
| AGGGTATGATCTAGTTGTTA+TGG | + | chr8_3:2693180-2693199 | Msa1269440:CDS | 35.0% | |
| GGGTATGATCTAGTTGTTAT+GGG | + | chr8_3:2693181-2693200 | Msa1269440:CDS | 35.0% | |
| TATGATCTAGTTGTTATGGG+AGG | + | chr8_3:2693184-2693203 | Msa1269440:CDS | 35.0% | |
| TTGAAGCTTTCCATGAATCA+GGG | - | chr8_3:2693216-2693235 | None:intergenic | 35.0% | |
| ! | TTTGAAGCTTTCCATGAATC+AGG | - | chr8_3:2693217-2693236 | None:intergenic | 35.0% |
| TGCATCAGATCATGAAAGAA+TGG | + | chr8_3:2693321-2693340 | Msa1269440:CDS | 35.0% | |
| TCATGAAAGAATGGTCTATG+TGG | + | chr8_3:2693330-2693349 | Msa1269440:CDS | 35.0% | |
| ! | TGTAAGATAGTGTTTTGTGC+CGG | + | chr8_3:2693460-2693479 | Msa1269440:CDS | 35.0% |
| ! | AGTTGTTGGTGGATATTGTA+CGG | + | chr8_3:2693507-2693526 | Msa1269440:CDS | 35.0% |
| GAGAAGAATGTACATGTGTA+AGG | + | chr8_3:2693660-2693679 | Msa1269440:CDS | 35.0% | |
| ! | ATAAGGAATGTTGCTTGTGT+GGG | + | chr8_3:2693745-2693764 | Msa1269440:CDS | 35.0% |
| ! | GCAGATGCATTGTTATTGAT+TGG | + | chr8_3:2693775-2693794 | Msa1269440:CDS | 35.0% |
| ! | TTGTTATTGATTGGGTCTAG+TGG | + | chr8_3:2693784-2693803 | Msa1269440:CDS | 35.0% |
| ! | TGTTATTGATTGGGTCTAGT+GGG | + | chr8_3:2693785-2693804 | Msa1269440:CDS | 35.0% |
| GAAAACCCAGAAAATTTCAC+CGG | + | chr8_3:2693868-2693887 | Msa1269440:CDS | 35.0% | |
| AGTTTCATACCAGGAATTTC+CGG | + | chr8_3:2692883-2692902 | Msa1269440:CDS | 35.0% | |
| !! | TGTAGCTTTAGCCAATAAAC+CGG | - | chr8_3:2693044-2693063 | None:intergenic | 35.0% |
| TGGAAACTGAAACAGGTATT+TGG | + | chr8_3:2693092-2693111 | Msa1269440:CDS | 35.0% | |
| !!! | ACCCTTGTTTTGTCAAATTG+CGG | + | chr8_3:2693153-2693172 | Msa1269440:CDS | 35.0% |
| AGGGTATGATCTAGTTGTTA+TGG | + | chr8_3:2693180-2693199 | Msa1269440:CDS | 35.0% | |
| GGGTATGATCTAGTTGTTAT+GGG | + | chr8_3:2693181-2693200 | Msa1269440:CDS | 35.0% | |
| TATGATCTAGTTGTTATGGG+AGG | + | chr8_3:2693184-2693203 | Msa1269440:CDS | 35.0% | |
| TTGAAGCTTTCCATGAATCA+GGG | - | chr8_3:2693216-2693235 | None:intergenic | 35.0% | |
| ! | TTTGAAGCTTTCCATGAATC+AGG | - | chr8_3:2693217-2693236 | None:intergenic | 35.0% |
| TGCATCAGATCATGAAAGAA+TGG | + | chr8_3:2693321-2693340 | Msa1269440:CDS | 35.0% | |
| TCATGAAAGAATGGTCTATG+TGG | + | chr8_3:2693330-2693349 | Msa1269440:CDS | 35.0% | |
| ! | TGTAAGATAGTGTTTTGTGC+CGG | + | chr8_3:2693460-2693479 | Msa1269440:CDS | 35.0% |
| ! | AGTTGTTGGTGGATATTGTA+CGG | + | chr8_3:2693507-2693526 | Msa1269440:CDS | 35.0% |
| GAGAAGAATGTACATGTGTA+AGG | + | chr8_3:2693660-2693679 | Msa1269440:CDS | 35.0% | |
| ! | ATAAGGAATGTTGCTTGTGT+GGG | + | chr8_3:2693745-2693764 | Msa1269440:CDS | 35.0% |
| ! | GCAGATGCATTGTTATTGAT+TGG | + | chr8_3:2693775-2693794 | Msa1269440:CDS | 35.0% |
| ! | TTGTTATTGATTGGGTCTAG+TGG | + | chr8_3:2693784-2693803 | Msa1269440:CDS | 35.0% |
| ! | TGTTATTGATTGGGTCTAGT+GGG | + | chr8_3:2693785-2693804 | Msa1269440:CDS | 35.0% |
| GAAAACCCAGAAAATTTCAC+CGG | + | chr8_3:2693868-2693887 | Msa1269440:CDS | 35.0% | |
| ! | TTTGGTTCGAGTTTCATACC+AGG | + | chr8_3:2692874-2692893 | Msa1269440:CDS | 40.0% |
| TGCTCAGAAAATCCTAGTCA+CGG | + | chr8_3:2692985-2693004 | Msa1269440:CDS | 40.0% | |
| ! | TATTTGGAGCGAGTTACCAA+TGG | + | chr8_3:2693108-2693127 | Msa1269440:CDS | 40.0% |
| ! | ATTTGGAGCGAGTTACCAAT+GGG | + | chr8_3:2693109-2693128 | Msa1269440:CDS | 40.0% |
| GGTAACCCTTCACTTAATTC+GGG | - | chr8_3:2693136-2693155 | None:intergenic | 40.0% | |
| GGGTAACCCTTCACTTAATT+CGG | - | chr8_3:2693137-2693156 | None:intergenic | 40.0% | |
| CCCGCAATTTGACAAAACAA+GGG | - | chr8_3:2693157-2693176 | None:intergenic | 40.0% | |
| !!! | CCCTTGTTTTGTCAAATTGC+GGG | + | chr8_3:2693154-2693173 | Msa1269440:CDS | 40.0% |
| ACCCGCAATTTGACAAAACA+AGG | - | chr8_3:2693158-2693177 | None:intergenic | 40.0% | |
| ! | TTTTGTCAAATTGCGGGTGT+AGG | + | chr8_3:2693160-2693179 | Msa1269440:CDS | 40.0% |
| TTTGTCAAATTGCGGGTGTA+GGG | + | chr8_3:2693161-2693180 | Msa1269440:CDS | 40.0% | |
| ATCTAGTTGTTATGGGAGGA+TGG | + | chr8_3:2693188-2693207 | Msa1269440:CDS | 40.0% | |
| TCTAGTTGTTATGGGAGGAT+GGG | + | chr8_3:2693189-2693208 | Msa1269440:CDS | 40.0% | |
| GATATTGTACGGAGATGCAA+GGG | + | chr8_3:2693518-2693537 | Msa1269440:CDS | 40.0% | |
| TTGTGTGGATGGTTGTGAAT+TGG | + | chr8_3:2693636-2693655 | Msa1269440:CDS | 40.0% | |
| ! | GATAAGGAATGTTGCTTGTG+TGG | + | chr8_3:2693744-2693763 | Msa1269440:CDS | 40.0% |
| TGGGTTTGGAGAACCTTATA+TGG | + | chr8_3:2693804-2693823 | Msa1269440:CDS | 40.0% | |
| GGGTTTGGAGAACCTTATAT+GGG | + | chr8_3:2693805-2693824 | Msa1269440:CDS | 40.0% | |
| ! | ACCTTATATGGGCTTTGTGT+TGG | + | chr8_3:2693816-2693835 | Msa1269440:CDS | 40.0% |
| TCCAACACAAAGCCCATATA+AGG | - | chr8_3:2693820-2693839 | None:intergenic | 40.0% | |
| TTTGTGTTGGACCTGAAGAA+TGG | + | chr8_3:2693829-2693848 | Msa1269440:CDS | 40.0% | |
| TACTCCAAACACCATTCTTC+AGG | - | chr8_3:2693843-2693862 | None:intergenic | 40.0% | |
| AAAAGCAACCAGATTGAACG+TGG | - | chr8_3:2693894-2693913 | None:intergenic | 40.0% | |
| !!! | CGTTCAATCTGGTTGCTTTT+TGG | + | chr8_3:2693894-2693913 | Msa1269440:CDS | 40.0% |
| ! | TTTGGTTCGAGTTTCATACC+AGG | + | chr8_3:2692874-2692893 | Msa1269440:CDS | 40.0% |
| TGCTCAGAAAATCCTAGTCA+CGG | + | chr8_3:2692985-2693004 | Msa1269440:CDS | 40.0% | |
| ! | TATTTGGAGCGAGTTACCAA+TGG | + | chr8_3:2693108-2693127 | Msa1269440:CDS | 40.0% |
| ! | ATTTGGAGCGAGTTACCAAT+GGG | + | chr8_3:2693109-2693128 | Msa1269440:CDS | 40.0% |
| GGTAACCCTTCACTTAATTC+GGG | - | chr8_3:2693136-2693155 | None:intergenic | 40.0% | |
| GGGTAACCCTTCACTTAATT+CGG | - | chr8_3:2693137-2693156 | None:intergenic | 40.0% | |
| CCCGCAATTTGACAAAACAA+GGG | - | chr8_3:2693157-2693176 | None:intergenic | 40.0% | |
| !!! | CCCTTGTTTTGTCAAATTGC+GGG | + | chr8_3:2693154-2693173 | Msa1269440:CDS | 40.0% |
| ACCCGCAATTTGACAAAACA+AGG | - | chr8_3:2693158-2693177 | None:intergenic | 40.0% | |
| ! | TTTTGTCAAATTGCGGGTGT+AGG | + | chr8_3:2693160-2693179 | Msa1269440:CDS | 40.0% |
| TTTGTCAAATTGCGGGTGTA+GGG | + | chr8_3:2693161-2693180 | Msa1269440:CDS | 40.0% | |
| ATCTAGTTGTTATGGGAGGA+TGG | + | chr8_3:2693188-2693207 | Msa1269440:CDS | 40.0% | |
| TCTAGTTGTTATGGGAGGAT+GGG | + | chr8_3:2693189-2693208 | Msa1269440:CDS | 40.0% | |
| GATATTGTACGGAGATGCAA+GGG | + | chr8_3:2693518-2693537 | Msa1269440:CDS | 40.0% | |
| TTGTGTGGATGGTTGTGAAT+TGG | + | chr8_3:2693636-2693655 | Msa1269440:CDS | 40.0% | |
| ! | GATAAGGAATGTTGCTTGTG+TGG | + | chr8_3:2693744-2693763 | Msa1269440:CDS | 40.0% |
| TGGGTTTGGAGAACCTTATA+TGG | + | chr8_3:2693804-2693823 | Msa1269440:CDS | 40.0% | |
| GGGTTTGGAGAACCTTATAT+GGG | + | chr8_3:2693805-2693824 | Msa1269440:CDS | 40.0% | |
| ! | ACCTTATATGGGCTTTGTGT+TGG | + | chr8_3:2693816-2693835 | Msa1269440:CDS | 40.0% |
| TCCAACACAAAGCCCATATA+AGG | - | chr8_3:2693820-2693839 | None:intergenic | 40.0% | |
| TTTGTGTTGGACCTGAAGAA+TGG | + | chr8_3:2693829-2693848 | Msa1269440:CDS | 40.0% | |
| TACTCCAAACACCATTCTTC+AGG | - | chr8_3:2693843-2693862 | None:intergenic | 40.0% | |
| AAAAGCAACCAGATTGAACG+TGG | - | chr8_3:2693894-2693913 | None:intergenic | 40.0% | |
| !!! | CGTTCAATCTGGTTGCTTTT+TGG | + | chr8_3:2693894-2693913 | Msa1269440:CDS | 40.0% |
| !! | AGACATAGCACGAGAGTGTT+TGG | + | chr8_3:2692856-2692875 | Msa1269440:CDS | 45.0% |
| TTCATACCAGGAATTTCCGG+CGG | + | chr8_3:2692886-2692905 | Msa1269440:CDS | 45.0% | |
| GCAAACAGAGATTCAAACGC+CGG | + | chr8_3:2692931-2692950 | Msa1269440:CDS | 45.0% | |
| ATTTGGACTGAACCGTGACT+AGG | - | chr8_3:2693000-2693019 | None:intergenic | 45.0% | |
| TCACTTAATTCGGGTCCCAT+TGG | - | chr8_3:2693127-2693146 | None:intergenic | 45.0% | |
| ATGGGACCCGAATTAAGTGA+AGG | + | chr8_3:2693127-2693146 | Msa1269440:CDS | 45.0% | |
| TGGGACCCGAATTAAGTGAA+GGG | + | chr8_3:2693128-2693147 | Msa1269440:CDS | 45.0% | |
| GCACAAGAGAAAAATGCGCA+GGG | - | chr8_3:2693304-2693323 | None:intergenic | 45.0% | |
| TGCACAAGAGAAAAATGCGC+AGG | - | chr8_3:2693305-2693324 | None:intergenic | 45.0% | |
| GAAAGAATGGTCTATGTGGC+AGG | + | chr8_3:2693334-2693353 | Msa1269440:CDS | 45.0% | |
| GTCAGCATTTGCTTACGATG+TGG | + | chr8_3:2693387-2693406 | Msa1269440:CDS | 45.0% | |
| ACGATGTGGCAAATGATGTG+TGG | + | chr8_3:2693401-2693420 | Msa1269440:CDS | 45.0% | |
| TCTGGCACGATCAAAGTTGT+TGG | + | chr8_3:2693493-2693512 | Msa1269440:CDS | 45.0% | |
| GGATATTGTACGGAGATGCA+AGG | + | chr8_3:2693517-2693536 | Msa1269440:CDS | 45.0% | |
| ! | CATGTGTAAGGGTGATGATG+TGG | + | chr8_3:2693672-2693691 | Msa1269440:CDS | 45.0% |
| GCAACATTCCTTATCTCCCT+AGG | - | chr8_3:2693739-2693758 | None:intergenic | 45.0% | |
| !! | TTGATTGGGTCTAGTGGGTT+TGG | + | chr8_3:2693790-2693809 | Msa1269440:CDS | 45.0% |
| TGGACCTGAAGAATGGTGTT+TGG | + | chr8_3:2693836-2693855 | Msa1269440:CDS | 45.0% | |
| !! | AGACATAGCACGAGAGTGTT+TGG | + | chr8_3:2692856-2692875 | Msa1269440:CDS | 45.0% |
| TTCATACCAGGAATTTCCGG+CGG | + | chr8_3:2692886-2692905 | Msa1269440:CDS | 45.0% | |
| GCAAACAGAGATTCAAACGC+CGG | + | chr8_3:2692931-2692950 | Msa1269440:CDS | 45.0% | |
| ATTTGGACTGAACCGTGACT+AGG | - | chr8_3:2693000-2693019 | None:intergenic | 45.0% | |
| TCACTTAATTCGGGTCCCAT+TGG | - | chr8_3:2693127-2693146 | None:intergenic | 45.0% | |
| ATGGGACCCGAATTAAGTGA+AGG | + | chr8_3:2693127-2693146 | Msa1269440:CDS | 45.0% | |
| TGGGACCCGAATTAAGTGAA+GGG | + | chr8_3:2693128-2693147 | Msa1269440:CDS | 45.0% | |
| GCACAAGAGAAAAATGCGCA+GGG | - | chr8_3:2693304-2693323 | None:intergenic | 45.0% | |
| TGCACAAGAGAAAAATGCGC+AGG | - | chr8_3:2693305-2693324 | None:intergenic | 45.0% | |
| GAAAGAATGGTCTATGTGGC+AGG | + | chr8_3:2693334-2693353 | Msa1269440:CDS | 45.0% | |
| GTCAGCATTTGCTTACGATG+TGG | + | chr8_3:2693387-2693406 | Msa1269440:CDS | 45.0% | |
| ACGATGTGGCAAATGATGTG+TGG | + | chr8_3:2693401-2693420 | Msa1269440:CDS | 45.0% | |
| TCTGGCACGATCAAAGTTGT+TGG | + | chr8_3:2693493-2693512 | Msa1269440:CDS | 45.0% | |
| GGATATTGTACGGAGATGCA+AGG | + | chr8_3:2693517-2693536 | Msa1269440:CDS | 45.0% | |
| ! | CATGTGTAAGGGTGATGATG+TGG | + | chr8_3:2693672-2693691 | Msa1269440:CDS | 45.0% |
| GCAACATTCCTTATCTCCCT+AGG | - | chr8_3:2693739-2693758 | None:intergenic | 45.0% | |
| !! | TTGATTGGGTCTAGTGGGTT+TGG | + | chr8_3:2693790-2693809 | Msa1269440:CDS | 45.0% |
| TGGACCTGAAGAATGGTGTT+TGG | + | chr8_3:2693836-2693855 | Msa1269440:CDS | 45.0% | |
| CACTCTCGTGCTATGTCTTC+TGG | - | chr8_3:2692854-2692873 | None:intergenic | 50.0% | |
| TGTTTGCCACCCTTTGCTCA+CGG | - | chr8_3:2692918-2692937 | None:intergenic | 50.0% | |
| TTATCTGCTACGTGGCGTTG+CGG | + | chr8_3:2693259-2693278 | Msa1269440:CDS | 50.0% | |
| AGAATGGTCTATGTGGCAGG+AGG | + | chr8_3:2693337-2693356 | Msa1269440:CDS | 50.0% | |
| ! | GTGTTTTGTGCCGGAGACAA+TGG | + | chr8_3:2693469-2693488 | Msa1269440:CDS | 50.0% |
| GGCACGATCAAAGTTGTTGG+TGG | + | chr8_3:2693496-2693515 | Msa1269440:CDS | 50.0% | |
| TCCAAAAACTCCTCCTCGAC+CGG | - | chr8_3:2693595-2693614 | None:intergenic | 50.0% | |
| TGGATGATGCCACATGTCCA+AGG | + | chr8_3:2693611-2693630 | Msa1269440:CDS | 50.0% | |
| CACACAAGTCCTTGGACATG+TGG | - | chr8_3:2693623-2693642 | None:intergenic | 50.0% | |
| CACATGTCCAAGGACTTGTG+TGG | + | chr8_3:2693621-2693640 | Msa1269440:CDS | 50.0% | |
| TGTCCAAGGACTTGTGTGGA+TGG | + | chr8_3:2693625-2693644 | Msa1269440:CDS | 50.0% | |
| CAACCATCCACACAAGTCCT+TGG | - | chr8_3:2693631-2693650 | None:intergenic | 50.0% | |
| ! | GTGTAAGGGTGATGATGTGG+TGG | + | chr8_3:2693675-2693694 | Msa1269440:CDS | 50.0% |
| ! | GATGATGTGGTGGCATTGGA+TGG | + | chr8_3:2693685-2693704 | Msa1269440:CDS | 50.0% |
| ATTGGATGGTGACACGTGGA+AGG | + | chr8_3:2693699-2693718 | Msa1269440:CDS | 50.0% | |
| ! | ATGTTGCTTGTGTGGGAGCT+TGG | + | chr8_3:2693752-2693771 | Msa1269440:CDS | 50.0% |
| ! | TGTTGCTTGTGTGGGAGCTT+GGG | + | chr8_3:2693753-2693772 | Msa1269440:CDS | 50.0% |
| ! | CGTGGCCGGTGAAATTTTCT+GGG | - | chr8_3:2693876-2693895 | None:intergenic | 50.0% |
| ! | ACGTGGCCGGTGAAATTTTC+TGG | - | chr8_3:2693877-2693896 | None:intergenic | 50.0% |
| CACTCTCGTGCTATGTCTTC+TGG | - | chr8_3:2692854-2692873 | None:intergenic | 50.0% | |
| TGTTTGCCACCCTTTGCTCA+CGG | - | chr8_3:2692918-2692937 | None:intergenic | 50.0% | |
| TTATCTGCTACGTGGCGTTG+CGG | + | chr8_3:2693259-2693278 | Msa1269440:CDS | 50.0% | |
| AGAATGGTCTATGTGGCAGG+AGG | + | chr8_3:2693337-2693356 | Msa1269440:CDS | 50.0% | |
| ! | GTGTTTTGTGCCGGAGACAA+TGG | + | chr8_3:2693469-2693488 | Msa1269440:CDS | 50.0% |
| GGCACGATCAAAGTTGTTGG+TGG | + | chr8_3:2693496-2693515 | Msa1269440:CDS | 50.0% | |
| TCCAAAAACTCCTCCTCGAC+CGG | - | chr8_3:2693595-2693614 | None:intergenic | 50.0% | |
| TGGATGATGCCACATGTCCA+AGG | + | chr8_3:2693611-2693630 | Msa1269440:CDS | 50.0% | |
| CACACAAGTCCTTGGACATG+TGG | - | chr8_3:2693623-2693642 | None:intergenic | 50.0% | |
| CACATGTCCAAGGACTTGTG+TGG | + | chr8_3:2693621-2693640 | Msa1269440:CDS | 50.0% | |
| TGTCCAAGGACTTGTGTGGA+TGG | + | chr8_3:2693625-2693644 | Msa1269440:CDS | 50.0% | |
| CAACCATCCACACAAGTCCT+TGG | - | chr8_3:2693631-2693650 | None:intergenic | 50.0% | |
| ! | GTGTAAGGGTGATGATGTGG+TGG | + | chr8_3:2693675-2693694 | Msa1269440:CDS | 50.0% |
| ! | GATGATGTGGTGGCATTGGA+TGG | + | chr8_3:2693685-2693704 | Msa1269440:CDS | 50.0% |
| ATTGGATGGTGACACGTGGA+AGG | + | chr8_3:2693699-2693718 | Msa1269440:CDS | 50.0% | |
| ! | ATGTTGCTTGTGTGGGAGCT+TGG | + | chr8_3:2693752-2693771 | Msa1269440:CDS | 50.0% |
| ! | TGTTGCTTGTGTGGGAGCTT+GGG | + | chr8_3:2693753-2693772 | Msa1269440:CDS | 50.0% |
| ! | CGTGGCCGGTGAAATTTTCT+GGG | - | chr8_3:2693876-2693895 | None:intergenic | 50.0% |
| ! | ACGTGGCCGGTGAAATTTTC+TGG | - | chr8_3:2693877-2693896 | None:intergenic | 50.0% |
| GAGCATGACCTGTACTCCTC+CGG | - | chr8_3:2692970-2692989 | None:intergenic | 55.0% | |
| GAGGATGGGACCCTGATTCA+TGG | + | chr8_3:2693203-2693222 | Msa1269440:CDS | 55.0% | |
| TATCTGCTACGTGGCGTTGC+GGG | + | chr8_3:2693260-2693279 | Msa1269440:CDS | 55.0% | |
| GTGGATCCCGCTTCCTGATA+TGG | + | chr8_3:2693420-2693439 | Msa1269440:CDS | 55.0% | |
| TCCCTCGCCATATCAGGAAG+CGG | - | chr8_3:2693430-2693449 | None:intergenic | 55.0% | |
| GCGATTCGAACGTAGTGCTG+AGG | + | chr8_3:2693540-2693559 | Msa1269440:CDS | 55.0% | |
| AGGAGTTCGATGTAGCCACG+TGG | + | chr8_3:2693560-2693579 | Msa1269440:CDS | 55.0% | |
| AGTTCGATGTAGCCACGTGG+AGG | + | chr8_3:2693563-2693582 | Msa1269440:CDS | 55.0% | |
| ! | TCCGGTCGAGGAGGAGTTTT+TGG | + | chr8_3:2693591-2693610 | Msa1269440:CDS | 55.0% |
| ! | GGGTGATGATGTGGTGGCAT+TGG | + | chr8_3:2693681-2693700 | Msa1269440:CDS | 55.0% |
| ! | TGGCATTGGATGGTGACACG+TGG | + | chr8_3:2693695-2693714 | Msa1269440:CDS | 55.0% |
| !! | CGAAGGTGCCTAGGGAGATA+AGG | + | chr8_3:2693728-2693747 | Msa1269440:CDS | 55.0% |
| TTCACCGGCCACGTTCAATC+TGG | + | chr8_3:2693883-2693902 | Msa1269440:CDS | 55.0% | |
| GCAACCAGATTGAACGTGGC+CGG | - | chr8_3:2693890-2693909 | None:intergenic | 55.0% | |
| GAGCATGACCTGTACTCCTC+CGG | - | chr8_3:2692970-2692989 | None:intergenic | 55.0% | |
| GAGGATGGGACCCTGATTCA+TGG | + | chr8_3:2693203-2693222 | Msa1269440:CDS | 55.0% | |
| TATCTGCTACGTGGCGTTGC+GGG | + | chr8_3:2693260-2693279 | Msa1269440:CDS | 55.0% | |
| GTGGATCCCGCTTCCTGATA+TGG | + | chr8_3:2693420-2693439 | Msa1269440:CDS | 55.0% | |
| TCCCTCGCCATATCAGGAAG+CGG | - | chr8_3:2693430-2693449 | None:intergenic | 55.0% | |
| GCGATTCGAACGTAGTGCTG+AGG | + | chr8_3:2693540-2693559 | Msa1269440:CDS | 55.0% | |
| AGGAGTTCGATGTAGCCACG+TGG | + | chr8_3:2693560-2693579 | Msa1269440:CDS | 55.0% | |
| AGTTCGATGTAGCCACGTGG+AGG | + | chr8_3:2693563-2693582 | Msa1269440:CDS | 55.0% | |
| ! | TCCGGTCGAGGAGGAGTTTT+TGG | + | chr8_3:2693591-2693610 | Msa1269440:CDS | 55.0% |
| ! | GGGTGATGATGTGGTGGCAT+TGG | + | chr8_3:2693681-2693700 | Msa1269440:CDS | 55.0% |
| ! | TGGCATTGGATGGTGACACG+TGG | + | chr8_3:2693695-2693714 | Msa1269440:CDS | 55.0% |
| !! | CGAAGGTGCCTAGGGAGATA+AGG | + | chr8_3:2693728-2693747 | Msa1269440:CDS | 55.0% |
| TTCACCGGCCACGTTCAATC+TGG | + | chr8_3:2693883-2693902 | Msa1269440:CDS | 55.0% | |
| GCAACCAGATTGAACGTGGC+CGG | - | chr8_3:2693890-2693909 | None:intergenic | 55.0% | |
| TGGCTACCGCCGGAAATTCC+TGG | - | chr8_3:2692895-2692914 | None:intergenic | 60.0% | |
| CGGTAGCCACCGTGAGCAAA+GGG | + | chr8_3:2692906-2692925 | Msa1269440:CDS | 60.0% | |
| TAGCCACCGTGAGCAAAGGG+TGG | + | chr8_3:2692909-2692928 | Msa1269440:CDS | 60.0% | |
| TTGCCACCCTTTGCTCACGG+TGG | - | chr8_3:2692915-2692934 | None:intergenic | 60.0% | |
| GACCTGTACTCCTCCGGACA+CGG | - | chr8_3:2692964-2692983 | None:intergenic | 60.0% | |
| ATCTGCTACGTGGCGTTGCG+GGG | + | chr8_3:2693261-2693280 | Msa1269440:CDS | 60.0% | |
| AAAAATGCGCAGGGCCCACC+AGG | - | chr8_3:2693295-2693314 | None:intergenic | 60.0% | |
| TGTGGCAGGAGGACATGACG+AGG | + | chr8_3:2693348-2693367 | Msa1269440:CDS | 60.0% | |
| TCCCGCTTCCTGATATGGCG+AGG | + | chr8_3:2693425-2693444 | Msa1269440:CDS | 60.0% | |
| CCCTCGCCATATCAGGAAGC+GGG | - | chr8_3:2693429-2693448 | None:intergenic | 60.0% | |
| CCCGCTTCCTGATATGGCGA+GGG | + | chr8_3:2693426-2693445 | Msa1269440:CDS | 60.0% | |
| TCACGCTCCCTCGCCATATC+AGG | - | chr8_3:2693436-2693455 | None:intergenic | 60.0% | |
| TGTGCCGGAGACAATGGCTC+TGG | + | chr8_3:2693475-2693494 | Msa1269440:CDS | 60.0% | |
| CGTGCCAGAGCCATTGTCTC+CGG | - | chr8_3:2693482-2693501 | None:intergenic | 60.0% | |
| TCGATGTAGCCACGTGGAGG+TGG | + | chr8_3:2693566-2693585 | Msa1269440:CDS | 60.0% | |
| CGATGTAGCCACGTGGAGGT+GGG | + | chr8_3:2693567-2693586 | Msa1269440:CDS | 60.0% | |
| GATGTAGCCACGTGGAGGTG+GGG | + | chr8_3:2693568-2693587 | Msa1269440:CDS | 60.0% | |
| GGATGGTGACACGTGGAAGG+TGG | + | chr8_3:2693702-2693721 | Msa1269440:CDS | 60.0% | |
| TGGTGACACGTGGAAGGTGG+TGG | + | chr8_3:2693705-2693724 | Msa1269440:CDS | 60.0% | |
| TGGCTACCGCCGGAAATTCC+TGG | - | chr8_3:2692895-2692914 | None:intergenic | 60.0% | |
| CGGTAGCCACCGTGAGCAAA+GGG | + | chr8_3:2692906-2692925 | Msa1269440:CDS | 60.0% | |
| TAGCCACCGTGAGCAAAGGG+TGG | + | chr8_3:2692909-2692928 | Msa1269440:CDS | 60.0% | |
| TTGCCACCCTTTGCTCACGG+TGG | - | chr8_3:2692915-2692934 | None:intergenic | 60.0% | |
| GACCTGTACTCCTCCGGACA+CGG | - | chr8_3:2692964-2692983 | None:intergenic | 60.0% | |
| ATCTGCTACGTGGCGTTGCG+GGG | + | chr8_3:2693261-2693280 | Msa1269440:CDS | 60.0% | |
| AAAAATGCGCAGGGCCCACC+AGG | - | chr8_3:2693295-2693314 | None:intergenic | 60.0% | |
| TGTGGCAGGAGGACATGACG+AGG | + | chr8_3:2693348-2693367 | Msa1269440:CDS | 60.0% | |
| TCCCGCTTCCTGATATGGCG+AGG | + | chr8_3:2693425-2693444 | Msa1269440:CDS | 60.0% | |
| CCCTCGCCATATCAGGAAGC+GGG | - | chr8_3:2693429-2693448 | None:intergenic | 60.0% | |
| CCCGCTTCCTGATATGGCGA+GGG | + | chr8_3:2693426-2693445 | Msa1269440:CDS | 60.0% | |
| TCACGCTCCCTCGCCATATC+AGG | - | chr8_3:2693436-2693455 | None:intergenic | 60.0% | |
| TGTGCCGGAGACAATGGCTC+TGG | + | chr8_3:2693475-2693494 | Msa1269440:CDS | 60.0% | |
| CGTGCCAGAGCCATTGTCTC+CGG | - | chr8_3:2693482-2693501 | None:intergenic | 60.0% | |
| TCGATGTAGCCACGTGGAGG+TGG | + | chr8_3:2693566-2693585 | Msa1269440:CDS | 60.0% | |
| CGATGTAGCCACGTGGAGGT+GGG | + | chr8_3:2693567-2693586 | Msa1269440:CDS | 60.0% | |
| GATGTAGCCACGTGGAGGTG+GGG | + | chr8_3:2693568-2693587 | Msa1269440:CDS | 60.0% | |
| GGATGGTGACACGTGGAAGG+TGG | + | chr8_3:2693702-2693721 | Msa1269440:CDS | 60.0% | |
| TGGTGACACGTGGAAGGTGG+TGG | + | chr8_3:2693705-2693724 | Msa1269440:CDS | 60.0% | |
| TTGCTCACGGTGGCTACCGC+CGG | - | chr8_3:2692905-2692924 | None:intergenic | 65.0% | |
| GCGGTAGCCACCGTGAGCAA+AGG | + | chr8_3:2692905-2692924 | Msa1269440:CDS | 65.0% | |
| CTCCGGACACGGCGAAACTC+CGG | - | chr8_3:2692953-2692972 | None:intergenic | 65.0% | |
| GCAGGGCCCACCAGGCATAT+CGG | - | chr8_3:2693287-2693306 | None:intergenic | 65.0% | |
| ! | CACGTGGAAGGTGGTGGCGA+AGG | + | chr8_3:2693711-2693730 | Msa1269440:CDS | 65.0% |
| !! | AGGTGGTGGCGAAGGTGCCT+AGG | + | chr8_3:2693719-2693738 | Msa1269440:CDS | 65.0% |
| !! | GGTGGTGGCGAAGGTGCCTA+GGG | + | chr8_3:2693720-2693739 | Msa1269440:CDS | 65.0% |
| TTGCTCACGGTGGCTACCGC+CGG | - | chr8_3:2692905-2692924 | None:intergenic | 65.0% | |
| GCGGTAGCCACCGTGAGCAA+AGG | + | chr8_3:2692905-2692924 | Msa1269440:CDS | 65.0% | |
| CTCCGGACACGGCGAAACTC+CGG | - | chr8_3:2692953-2692972 | None:intergenic | 65.0% | |
| GCAGGGCCCACCAGGCATAT+CGG | - | chr8_3:2693287-2693306 | None:intergenic | 65.0% | |
| ! | CACGTGGAAGGTGGTGGCGA+AGG | + | chr8_3:2693711-2693730 | Msa1269440:CDS | 65.0% |
| !! | AGGTGGTGGCGAAGGTGCCT+AGG | + | chr8_3:2693719-2693738 | Msa1269440:CDS | 65.0% |
| !! | GGTGGTGGCGAAGGTGCCTA+GGG | + | chr8_3:2693720-2693739 | Msa1269440:CDS | 65.0% |
| CGCCGGAGTTTCGCCGTGTC+CGG | + | chr8_3:2692948-2692967 | Msa1269440:CDS | 70.0% | |
| CGGAGTTTCGCCGTGTCCGG+AGG | + | chr8_3:2692951-2692970 | Msa1269440:CDS | 70.0% | |
| ! | CGCCGTGTCCGGAGGAGTAC+AGG | + | chr8_3:2692959-2692978 | Msa1269440:CDS | 70.0% |
| CGTTGCGGGGCCGATATGCC+TGG | + | chr8_3:2693274-2693293 | Msa1269440:CDS | 70.0% | |
| TGCGGGGCCGATATGCCTGG+TGG | + | chr8_3:2693277-2693296 | Msa1269440:CDS | 70.0% | |
| GCGGGGCCGATATGCCTGGT+GGG | + | chr8_3:2693278-2693297 | Msa1269440:CDS | 70.0% | |
| AGCCACGTGGAGGTGGGGTC+CGG | + | chr8_3:2693573-2693592 | Msa1269440:CDS | 70.0% | |
| CGCCGGAGTTTCGCCGTGTC+CGG | + | chr8_3:2692948-2692967 | Msa1269440:CDS | 70.0% | |
| CGGAGTTTCGCCGTGTCCGG+AGG | + | chr8_3:2692951-2692970 | Msa1269440:CDS | 70.0% | |
| ! | CGCCGTGTCCGGAGGAGTAC+AGG | + | chr8_3:2692959-2692978 | Msa1269440:CDS | 70.0% |
| CGTTGCGGGGCCGATATGCC+TGG | + | chr8_3:2693274-2693293 | Msa1269440:CDS | 70.0% | |
| TGCGGGGCCGATATGCCTGG+TGG | + | chr8_3:2693277-2693296 | Msa1269440:CDS | 70.0% | |
| GCGGGGCCGATATGCCTGGT+GGG | + | chr8_3:2693278-2693297 | Msa1269440:CDS | 70.0% | |
| AGCCACGTGGAGGTGGGGTC+CGG | + | chr8_3:2693573-2693592 | Msa1269440:CDS | 70.0% | |
| GACCGGACCCCACCTCCACG+TGG | - | chr8_3:2693578-2693597 | None:intergenic | 75.0% | |
| GTGGAGGTGGGGTCCGGTCG+AGG | + | chr8_3:2693579-2693598 | Msa1269440:CDS | 75.0% | |
| GAGGTGGGGTCCGGTCGAGG+AGG | + | chr8_3:2693582-2693601 | Msa1269440:CDS | 75.0% | |
| GACCGGACCCCACCTCCACG+TGG | - | chr8_3:2693578-2693597 | None:intergenic | 75.0% | |
| GTGGAGGTGGGGTCCGGTCG+AGG | + | chr8_3:2693579-2693598 | Msa1269440:CDS | 75.0% | |
| GAGGTGGGGTCCGGTCGAGG+AGG | + | chr8_3:2693582-2693601 | Msa1269440:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 2692830 | 2693924 | 2692830 | ID=Msa1269440;Name=Msa1269440 |
| chr8_3 | mRNA | 2692830 | 2693924 | 2692830 | ID=Msa1269440-mRNA-1;Parent=Msa1269440;Name=Msa1269440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|364 |
| chr8_3 | exon | 2692830 | 2693924 | 2692830 | ID=Msa1269440-mRNA-1:exon:848;Parent=Msa1269440-mRNA-1 |
| chr8_3 | CDS | 2692830 | 2693924 | 2692830 | ID=Msa1269440-mRNA-1:cds;Parent=Msa1269440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
