Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334300 | XP_013464732.1 | 96.838 | 253 | 8 | 0 | 1 | 253 | 1 | 253 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334300 | sp|P24805|TSJT1_TOBAC | 40.940 | 149 | 87 | 1 | 1 | 149 | 1 | 148 | 2.13e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186540 | Msa0334300 | 0.831084 | 2.039479e-55 | -8.615850e-47 |
| Msa0216370 | Msa0334300 | 0.899792 | 1.394706e-77 | -8.615850e-47 |
| Msa0225420 | Msa0334300 | 0.826798 | 2.226568e-54 | -8.615850e-47 |
| Msa0225720 | Msa0334300 | 0.820973 | 5.166893e-53 | -8.615850e-47 |
| Msa0256570 | Msa0334300 | 0.960429 | 1.510056e-118 | -8.615850e-47 |
| Msa0295710 | Msa0334300 | 0.957041 | 7.041808e-115 | -8.615850e-47 |
| Msa0301260 | Msa0334300 | 0.832617 | 8.535112e-56 | -8.615850e-47 |
| Msa0334300 | Msa0385740 | 0.830564 | 2.735511e-55 | -8.615850e-47 |
| Msa0334300 | Msa0549530 | 0.845028 | 5.241630e-59 | -8.615850e-47 |
| Msa0334300 | Msa0556520 | 0.801412 | 9.115137e-49 | -8.615850e-47 |
| Msa0334300 | Msa0578410 | 0.822077 | 2.873502e-53 | -8.615850e-47 |
| Msa0334300 | Msa0603230 | 0.826873 | 2.136616e-54 | -8.615850e-47 |
| Msa0334300 | Msa0645880 | 0.860727 | 1.688393e-63 | -8.615850e-47 |
| Msa0334300 | Msa0652050 | 0.809650 | 1.703749e-50 | -8.615850e-47 |
| Msa0334300 | Msa0685730 | 0.854699 | 1.034547e-61 | -8.615850e-47 |
| Msa0334300 | Msa0776560 | 0.836210 | 1.069318e-56 | -8.615850e-47 |
| Msa0334300 | Msa0859120 | 0.844463 | 7.442167e-59 | -8.615850e-47 |
| Msa0334300 | Msa1269440 | 0.883458 | 4.411326e-71 | -8.615850e-47 |
| Msa0334300 | Msa1335090 | 0.861103 | 1.297404e-63 | -8.615850e-47 |
| Msa0334300 | Msa1339020 | 0.825075 | 5.711106e-54 | -8.615850e-47 |
| Msa0334300 | Msa1422380 | 0.806374 | 8.486744e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334300 | MtrunA17_Chr2g0317901 | 96.838 | 253 | 8 | 0 | 1 | 253 | 1 | 253 | 0.0 | 511 |
| Msa0334300 | MtrunA17_Chr2g0281901 | 65.600 | 250 | 85 | 1 | 1 | 250 | 1 | 249 | 8.34e-116 | 332 |
| Msa0334300 | MtrunA17_Chr4g0047531 | 60.558 | 251 | 98 | 1 | 1 | 250 | 64 | 314 | 1.57e-105 | 308 |
| Msa0334300 | MtrunA17_Chr1g0166351 | 47.012 | 251 | 124 | 4 | 1 | 247 | 1 | 246 | 5.10e-76 | 231 |
| Msa0334300 | MtrunA17_Chr1g0204611 | 47.222 | 252 | 122 | 5 | 1 | 247 | 1 | 246 | 1.12e-75 | 230 |
| Msa0334300 | MtrunA17_Chr2g0287871 | 40.948 | 232 | 130 | 5 | 1 | 230 | 1 | 227 | 1.38e-53 | 173 |
| Msa0334300 | MtrunA17_Chr4g0065571 | 39.056 | 233 | 134 | 6 | 1 | 230 | 1 | 228 | 7.52e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0334300 | AT4G27450.1 | 78.226 | 248 | 53 | 1 | 1 | 247 | 1 | 248 | 8.92e-146 | 408 |
| Msa0334300 | AT3G15450.1 | 68.675 | 249 | 74 | 3 | 1 | 247 | 1 | 247 | 2.31e-124 | 353 |
| Msa0334300 | AT3G15450.2 | 66.839 | 193 | 60 | 3 | 1 | 191 | 1 | 191 | 3.99e-88 | 260 |
| Msa0334300 | AT5G43830.1 | 48.413 | 252 | 120 | 4 | 1 | 247 | 1 | 247 | 1.72e-78 | 237 |
| Msa0334300 | AT3G15450.3 | 64.286 | 182 | 58 | 4 | 1 | 180 | 1 | 177 | 2.46e-74 | 224 |
| Msa0334300 | AT3G22850.1 | 44.939 | 247 | 133 | 1 | 1 | 247 | 1 | 244 | 5.28e-73 | 223 |
| Msa0334300 | AT5G19140.1 | 42.241 | 232 | 127 | 5 | 1 | 230 | 1 | 227 | 3.31e-55 | 177 |
| Msa0334300 | AT5G19140.3 | 48.521 | 169 | 84 | 2 | 63 | 230 | 25 | 191 | 5.81e-50 | 163 |
| Msa0334300 | AT5G19140.2 | 39.655 | 232 | 121 | 6 | 1 | 230 | 1 | 215 | 3.45e-47 | 156 |
Find 76 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTAGAGCTTAAGATTT+TGG | 0.158220 | 2_4:-52584075 | Msa0334300:five_prime_UTR |
| AACCTTTGATGAAGAGAAAA+AGG | 0.230736 | 2_4:+52583848 | None:intergenic |
| TGTTTCTGATTGAAGCTTAT+AGG | 0.236090 | 2_4:-52583282 | Msa0334300:CDS |
| ACAAGGTAGTGAAGTGCTTT+TGG | 0.269489 | 2_4:-52582140 | Msa0334300:three_prime_UTR |
| AAGGTAGGTGGTGGTGGTGG+TGG | 0.270247 | 2_4:+52582234 | None:intergenic |
| ACAACTTGATCTGGTGGATA+TGG | 0.300897 | 2_4:+52583241 | None:intergenic |
| TCACTACCTTGTTTCTTAGA+AGG | 0.306212 | 2_4:+52582151 | None:intergenic |
| TCCTTACTGAACAAGCAATA+TGG | 0.322158 | 2_4:-52583331 | Msa0334300:CDS |
| TGACATATACAGCTTGTTCT+TGG | 0.334278 | 2_4:-52583371 | Msa0334300:CDS |
| CTTGTTTCTTAGAAGGAAAC+AGG | 0.339576 | 2_4:+52582158 | None:intergenic |
| GCAGGGCTATTCAGCTCTTC+AGG | 0.347531 | 2_4:+52584001 | None:intergenic |
| TGGTGGATTGAAGTTGTATT+GGG | 0.352740 | 2_4:-52583021 | Msa0334300:CDS |
| TTCATAGAACAAGTATTATC+AGG | 0.367478 | 2_4:+52583911 | None:intergenic |
| GACATATACAGCTTGTTCTT+GGG | 0.373171 | 2_4:-52583370 | Msa0334300:CDS |
| GATGTGTGGGGCCAACTTTA+AGG | 0.380784 | 2_4:-52582427 | Msa0334300:CDS |
| TTTAAGCCTTTGTATGATGC+AGG | 0.380881 | 2_4:+52583983 | None:intergenic |
| AATACTTGTTCTATGAACTT+TGG | 0.381957 | 2_4:-52583905 | Msa0334300:CDS |
| AACCCTCTTGTACAACATTA+AGG | 0.386014 | 2_4:+52582961 | None:intergenic |
| GTTGTTTATGACAGCACATA+TGG | 0.386283 | 2_4:-52583190 | Msa0334300:CDS |
| TTGCTCCCATTCCATCCAAT+TGG | 0.404613 | 2_4:+52582356 | None:intergenic |
| ATGGTGGATTGAAGTTGTAT+TGG | 0.415848 | 2_4:-52583022 | Msa0334300:CDS |
| CAAGTTGTTAAGGAACTTGA+TGG | 0.416575 | 2_4:-52583226 | Msa0334300:CDS |
| TAAGGCAAGGTAGGTGGTGG+TGG | 0.423919 | 2_4:+52582228 | None:intergenic |
| TATTGGGGTATTGCCGCTGA+TGG | 0.425828 | 2_4:-52583005 | Msa0334300:CDS |
| TCCACCAGATCAAGTTGTTA+AGG | 0.433324 | 2_4:-52583236 | Msa0334300:CDS |
| TGGTGGTGGTAGGGTTGGCT+AGG | 0.434280 | 2_4:+52582251 | None:intergenic |
| AGAATTTCTTCAGAAAGCTT+AGG | 0.436367 | 2_4:+52583956 | None:intergenic |
| AGTTCCTTAACAACTTGATC+TGG | 0.448722 | 2_4:+52583232 | None:intergenic |
| ACCATATTGCTTGTTCAGTA+AGG | 0.461779 | 2_4:+52583330 | None:intergenic |
| GAACTTATCAACCTTAAAGT+TGG | 0.462511 | 2_4:+52582416 | None:intergenic |
| GTGAATCCAATTGGATGGAA+TGG | 0.469235 | 2_4:-52582362 | Msa0334300:CDS |
| GTGGATGAGCAAGACCTTTG+TGG | 0.473208 | 2_4:+52584023 | None:intergenic |
| ACGACAAATTCAAAAGGATA+AGG | 0.473678 | 2_4:+52582210 | None:intergenic |
| GGCAAGGTAGGTGGTGGTGG+TGG | 0.476849 | 2_4:+52582231 | None:intergenic |
| TTACTTAGTATTGAATATGA+AGG | 0.487265 | 2_4:+52584109 | None:intergenic |
| CAAGCAATATGGTTTGTCAA+AGG | 0.499784 | 2_4:-52583320 | Msa0334300:CDS |
| ACTCCTTCACTGTCTATCCT+TGG | 0.503821 | 2_4:+52582450 | None:intergenic |
| CAATTGATACCTGCTGGAAA+AGG | 0.504528 | 2_4:+52582921 | None:intergenic |
| AAGCAATATGGTTTGTCAAA+GGG | 0.505741 | 2_4:-52583319 | Msa0334300:CDS |
| TGAATCCAATTGGATGGAAT+GGG | 0.508806 | 2_4:-52582361 | Msa0334300:CDS |
| TTTATGCAGGGTTCTGATGG+TGG | 0.519132 | 2_4:-52583038 | Msa0334300:intron |
| TGAATCACGACAAATTCAAA+AGG | 0.520647 | 2_4:+52582204 | None:intergenic |
| GCATCCACTGAACAAGTTGA+AGG | 0.521756 | 2_4:-52582478 | Msa0334300:CDS |
| TCCTTAACAACTTGATCTGG+TGG | 0.527113 | 2_4:+52583235 | None:intergenic |
| GGATAAGGCAAGGTAGGTGG+TGG | 0.529393 | 2_4:+52582225 | None:intergenic |
| TCAAAAGGATAAGGCAAGGT+AGG | 0.535525 | 2_4:+52582219 | None:intergenic |
| ACATATACAGCTTGTTCTTG+GGG | 0.539505 | 2_4:-52583369 | Msa0334300:CDS |
| TTAAGCCTTTGTATGATGCA+GGG | 0.539695 | 2_4:+52583984 | None:intergenic |
| TGTATGTTTCATAGTGAAGG+AGG | 0.544867 | 2_4:-52582516 | Msa0334300:CDS |
| CTGTTTCCTTCTAAGAAACA+AGG | 0.552626 | 2_4:-52582157 | Msa0334300:three_prime_UTR |
| GAGTTGGTAGTGAATCCAAT+TGG | 0.553165 | 2_4:-52582371 | Msa0334300:CDS |
| TGGTAGTGAATCCAATTGGA+TGG | 0.564629 | 2_4:-52582367 | Msa0334300:CDS |
| ATTGGGGTATTGCCGCTGAT+GGG | 0.568391 | 2_4:-52583004 | Msa0334300:CDS |
| GTCAACAGTATTCCTCGAGT+TGG | 0.573016 | 2_4:-52582387 | Msa0334300:CDS |
| GGGTGTATGTTTCATAGTGA+AGG | 0.585970 | 2_4:-52582519 | Msa0334300:CDS |
| GTGGATATGGACCACGGTCA+CGG | 0.586213 | 2_4:+52583254 | None:intergenic |
| GGGCTATTCAGCTCTTCAGG+TGG | 0.589074 | 2_4:+52584004 | None:intergenic |
| ACCTGCTGGAAAAGGAGCAA+AGG | 0.590844 | 2_4:+52582929 | None:intergenic |
| TGACCTTAATGTTGTACAAG+AGG | 0.595852 | 2_4:-52582964 | Msa0334300:CDS |
| ATTGCCTTCAACTTGTTCAG+TGG | 0.600704 | 2_4:+52582474 | None:intergenic |
| GGTGGATTGAAGTTGTATTG+GGG | 0.606006 | 2_4:-52583020 | Msa0334300:CDS |
| GACAGTGAAGGAGTGATGTG+TGG | 0.622107 | 2_4:-52582441 | Msa0334300:CDS |
| ACAGTGAAGGAGTGATGTGT+GGG | 0.629204 | 2_4:-52582440 | Msa0334300:CDS |
| AATAGCCCTGCATCATACAA+AGG | 0.630008 | 2_4:-52583989 | Msa0334300:CDS |
| ATAAGCTTCAATCAGAAACA+TGG | 0.642892 | 2_4:+52583285 | None:intergenic |
| AAAGGATAAGGCAAGGTAGG+TGG | 0.645393 | 2_4:+52582222 | None:intergenic |
| ACAAGTTGAAGGCAATGCCA+AGG | 0.645708 | 2_4:-52582467 | Msa0334300:CDS |
| TGTGCTGTCATAAACAACAA+AGG | 0.658420 | 2_4:+52583195 | None:intergenic |
| AAATTCAAAAGGATAAGGCA+AGG | 0.664416 | 2_4:+52582215 | None:intergenic |
| TATAGGACACTCCGTGACCG+TGG | 0.676131 | 2_4:-52583265 | Msa0334300:CDS |
| ATGCCAAGGATAGACAGTGA+AGG | 0.681425 | 2_4:-52582453 | Msa0334300:CDS |
| GACCTTAATGTTGTACAAGA+GGG | 0.690369 | 2_4:-52582963 | Msa0334300:CDS |
| TTGGATTCACTACCAACTCG+AGG | 0.697059 | 2_4:+52582375 | None:intergenic |
| GATCACAACAGACCCATCAG+CGG | 0.715155 | 2_4:+52582992 | None:intergenic |
| GATCTGGTGGATATGGACCA+CGG | 0.727078 | 2_4:+52583248 | None:intergenic |
| CAGTGAAGGAGTGATGTGTG+GGG | 0.800044 | 2_4:-52582439 | Msa0334300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAACAAAAAAAAAAAAA+AGG | + | chr2_4:52582420-52582439 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACTCTAAATA+CGG | + | chr2_4:52583506-52583525 | None:intergenic | 10.0% |
| !! | TAGTAACAAAAAAAAAAAAA+AGG | + | chr2_4:52582420-52582439 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACTCTAAATA+CGG | + | chr2_4:52583506-52583525 | None:intergenic | 10.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | + | chr2_4:52583318-52583337 | None:intergenic | 15.0% |
| !! | ATGTAAATACATAAAAACTA+CGG | - | chr2_4:52583875-52583894 | Msa0334300:CDS | 15.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | + | chr2_4:52583318-52583337 | None:intergenic | 15.0% |
| !! | ATGTAAATACATAAAAACTA+CGG | - | chr2_4:52583875-52583894 | Msa0334300:CDS | 15.0% |
| !! | TGAATATGAAGGATTAAAAA+TGG | + | chr2_4:52582079-52582098 | None:intergenic | 20.0% |
| !!! | TTACTTAGTATTGAATATGA+AGG | + | chr2_4:52582090-52582109 | None:intergenic | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | - | chr2_4:52582543-52582562 | Msa0334300:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | + | chr2_4:52583319-52583338 | None:intergenic | 20.0% |
| !! | AAAACAAAATCTCTTCAAAT+TGG | - | chr2_4:52583328-52583347 | Msa0334300:CDS | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | - | chr2_4:52583465-52583484 | Msa0334300:intron | 20.0% |
| !!! | TTTTTAAAATCATTGAATGC+AGG | - | chr2_4:52583656-52583675 | Msa0334300:intron | 20.0% |
| !!! | TTTTAAAATCATTGAATGCA+GGG | - | chr2_4:52583657-52583676 | Msa0334300:intron | 20.0% |
| !! | TGAATATGAAGGATTAAAAA+TGG | + | chr2_4:52582079-52582098 | None:intergenic | 20.0% |
| !!! | TTACTTAGTATTGAATATGA+AGG | + | chr2_4:52582090-52582109 | None:intergenic | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | - | chr2_4:52582543-52582562 | Msa0334300:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | + | chr2_4:52583319-52583338 | None:intergenic | 20.0% |
| !! | AAAACAAAATCTCTTCAAAT+TGG | - | chr2_4:52583328-52583347 | Msa0334300:CDS | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | - | chr2_4:52583465-52583484 | Msa0334300:intron | 20.0% |
| !!! | TTTTTAAAATCATTGAATGC+AGG | - | chr2_4:52583656-52583675 | Msa0334300:intron | 20.0% |
| !!! | TTTTAAAATCATTGAATGCA+GGG | - | chr2_4:52583657-52583676 | Msa0334300:intron | 20.0% |
| !! | TTTCTTAGAGCTTAAGATTT+TGG | - | chr2_4:52582121-52582140 | Msa0334300:intron | 25.0% |
| ! | GTGTAGAATCAAAAAAATGT+TGG | - | chr2_4:52582143-52582162 | Msa0334300:three_prime_UTR | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | + | chr2_4:52582288-52582307 | None:intergenic | 25.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | - | chr2_4:52582291-52582310 | Msa0334300:three_prime_UTR | 25.0% |
| ! | ACAGAATTCATCCTTATAAA+AGG | + | chr2_4:52582557-52582576 | None:intergenic | 25.0% |
| ! | TCCAACATAAAAGCTTAATA+TGG | - | chr2_4:52582576-52582595 | Msa0334300:intron | 25.0% |
| !! | ACCATATTAAGCTTTTATGT+TGG | + | chr2_4:52582580-52582599 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTAATATGGTGT+AGG | - | chr2_4:52582582-52582601 | Msa0334300:intron | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | + | chr2_4:52583098-52583117 | None:intergenic | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | - | chr2_4:52583145-52583164 | Msa0334300:intron | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | - | chr2_4:52583146-52583165 | Msa0334300:intron | 25.0% |
| !! | TTTCTTAGAGCTTAAGATTT+TGG | - | chr2_4:52582121-52582140 | Msa0334300:intron | 25.0% |
| ! | GTGTAGAATCAAAAAAATGT+TGG | - | chr2_4:52582143-52582162 | Msa0334300:three_prime_UTR | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | + | chr2_4:52582288-52582307 | None:intergenic | 25.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | - | chr2_4:52582291-52582310 | Msa0334300:three_prime_UTR | 25.0% |
| ! | ACAGAATTCATCCTTATAAA+AGG | + | chr2_4:52582557-52582576 | None:intergenic | 25.0% |
| ! | TCCAACATAAAAGCTTAATA+TGG | - | chr2_4:52582576-52582595 | Msa0334300:intron | 25.0% |
| !! | ACCATATTAAGCTTTTATGT+TGG | + | chr2_4:52582580-52582599 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTAATATGGTGT+AGG | - | chr2_4:52582582-52582601 | Msa0334300:intron | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | + | chr2_4:52583098-52583117 | None:intergenic | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | - | chr2_4:52583145-52583164 | Msa0334300:intron | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | - | chr2_4:52583146-52583165 | Msa0334300:intron | 25.0% |
| AAGGATTAAAAATGGAAGCA+GGG | + | chr2_4:52582071-52582090 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | + | chr2_4:52582243-52582262 | None:intergenic | 30.0% | |
| AACCTTTGATGAAGAGAAAA+AGG | + | chr2_4:52582351-52582370 | None:intergenic | 30.0% | |
| TAACATAATACACATGTCTC+TGG | + | chr2_4:52582622-52582641 | None:intergenic | 30.0% | |
| TCTACTAATCTCCTTCAATT+TGG | + | chr2_4:52582698-52582717 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | + | chr2_4:52582735-52582754 | None:intergenic | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | - | chr2_4:52582796-52582815 | Msa0334300:intron | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | - | chr2_4:52582797-52582816 | Msa0334300:intron | 30.0% |
| ! | AAGCAATATGGTTTGTCAAA+GGG | - | chr2_4:52582877-52582896 | Msa0334300:intron | 30.0% |
| ATAAGCTTCAATCAGAAACA+TGG | + | chr2_4:52582914-52582933 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | - | chr2_4:52582914-52582933 | Msa0334300:intron | 30.0% |
| ATTACATCATAACCAACATG+TGG | - | chr2_4:52583355-52583374 | Msa0334300:CDS | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | - | chr2_4:52583470-52583489 | Msa0334300:intron | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | - | chr2_4:52583622-52583641 | Msa0334300:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | + | chr2_4:52583783-52583802 | None:intergenic | 30.0% | |
| AAATTCAAAAGGATAAGGCA+AGG | + | chr2_4:52583984-52584003 | None:intergenic | 30.0% | |
| ACGACAAATTCAAAAGGATA+AGG | + | chr2_4:52583989-52584008 | None:intergenic | 30.0% | |
| TGAATCACGACAAATTCAAA+AGG | + | chr2_4:52583995-52584014 | None:intergenic | 30.0% | |
| AAGGATTAAAAATGGAAGCA+GGG | + | chr2_4:52582071-52582090 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | + | chr2_4:52582243-52582262 | None:intergenic | 30.0% | |
| AACCTTTGATGAAGAGAAAA+AGG | + | chr2_4:52582351-52582370 | None:intergenic | 30.0% | |
| TAACATAATACACATGTCTC+TGG | + | chr2_4:52582622-52582641 | None:intergenic | 30.0% | |
| TCTACTAATCTCCTTCAATT+TGG | + | chr2_4:52582698-52582717 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | + | chr2_4:52582735-52582754 | None:intergenic | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | - | chr2_4:52582796-52582815 | Msa0334300:intron | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | - | chr2_4:52582797-52582816 | Msa0334300:intron | 30.0% |
| ! | AAGCAATATGGTTTGTCAAA+GGG | - | chr2_4:52582877-52582896 | Msa0334300:intron | 30.0% |
| ATAAGCTTCAATCAGAAACA+TGG | + | chr2_4:52582914-52582933 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | - | chr2_4:52582914-52582933 | Msa0334300:intron | 30.0% |
| ATTACATCATAACCAACATG+TGG | - | chr2_4:52583355-52583374 | Msa0334300:CDS | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | - | chr2_4:52583470-52583489 | Msa0334300:intron | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | - | chr2_4:52583622-52583641 | Msa0334300:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | + | chr2_4:52583783-52583802 | None:intergenic | 30.0% | |
| AAATTCAAAAGGATAAGGCA+AGG | + | chr2_4:52583984-52584003 | None:intergenic | 30.0% | |
| ACGACAAATTCAAAAGGATA+AGG | + | chr2_4:52583989-52584008 | None:intergenic | 30.0% | |
| TGAATCACGACAAATTCAAA+AGG | + | chr2_4:52583995-52584014 | None:intergenic | 30.0% | |
| GAAGGATTAAAAATGGAAGC+AGG | + | chr2_4:52582072-52582091 | None:intergenic | 35.0% | |
| ! | ATGTTGGCAATTTTCCACAA+AGG | - | chr2_4:52582159-52582178 | Msa0334300:three_prime_UTR | 35.0% |
| TTAAGCCTTTGTATGATGCA+GGG | + | chr2_4:52582215-52582234 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | + | chr2_4:52582216-52582235 | None:intergenic | 35.0% | |
| TGAAGAGAAAAAGGCTTATC+AGG | + | chr2_4:52582342-52582361 | None:intergenic | 35.0% | |
| ! | AGCCTTTTTCTCTTCATCAA+AGG | - | chr2_4:52582346-52582365 | Msa0334300:exon | 35.0% |
| CTTAATATGGTGTAGGAGTA+TGG | - | chr2_4:52582589-52582608 | Msa0334300:intron | 35.0% | |
| ATGTTGTTAGTGCTAAGAGA+TGG | - | chr2_4:52582773-52582792 | Msa0334300:intron | 35.0% | |
| !! | CTAAGAGATGGTATTTTTGC+AGG | - | chr2_4:52582785-52582804 | Msa0334300:intron | 35.0% |
| ! | TGACATATACAGCTTGTTCT+TGG | - | chr2_4:52582825-52582844 | Msa0334300:intron | 35.0% |
| ! | GACATATACAGCTTGTTCTT+GGG | - | chr2_4:52582826-52582845 | Msa0334300:intron | 35.0% |
| ! | ACATATACAGCTTGTTCTTG+GGG | - | chr2_4:52582827-52582846 | Msa0334300:intron | 35.0% |
| TCCTTACTGAACAAGCAATA+TGG | - | chr2_4:52582865-52582884 | Msa0334300:intron | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | + | chr2_4:52582869-52582888 | None:intergenic | 35.0% | |
| ! | CAAGCAATATGGTTTGTCAA+AGG | - | chr2_4:52582876-52582895 | Msa0334300:intron | 35.0% |
| AGTTCCTTAACAACTTGATC+TGG | + | chr2_4:52582967-52582986 | None:intergenic | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | - | chr2_4:52582970-52582989 | Msa0334300:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | + | chr2_4:52583004-52583023 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | - | chr2_4:52583006-52583025 | Msa0334300:CDS | 35.0% | |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | - | chr2_4:52583155-52583174 | Msa0334300:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | - | chr2_4:52583174-52583193 | Msa0334300:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | - | chr2_4:52583175-52583194 | Msa0334300:CDS | 35.0% |
| TGACCTTAATGTTGTACAAG+AGG | - | chr2_4:52583232-52583251 | Msa0334300:CDS | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | - | chr2_4:52583233-52583252 | Msa0334300:CDS | 35.0% | |
| AACCCTCTTGTACAACATTA+AGG | + | chr2_4:52583238-52583257 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | + | chr2_4:52583547-52583566 | None:intergenic | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | + | chr2_4:52583558-52583577 | None:intergenic | 35.0% | |
| AAGTGTCTGAGTCTCTAATT+TGG | + | chr2_4:52583607-52583626 | None:intergenic | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | - | chr2_4:52583680-52583699 | Msa0334300:intron | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | - | chr2_4:52583835-52583854 | Msa0334300:intron | 35.0% | |
| ! | CTTGTTTCTTAGAAGGAAAC+AGG | + | chr2_4:52584041-52584060 | None:intergenic | 35.0% |
| ! | CTGTTTCCTTCTAAGAAACA+AGG | - | chr2_4:52584039-52584058 | Msa0334300:CDS | 35.0% |
| ! | TCACTACCTTGTTTCTTAGA+AGG | + | chr2_4:52584048-52584067 | None:intergenic | 35.0% |
| GAAGGATTAAAAATGGAAGC+AGG | + | chr2_4:52582072-52582091 | None:intergenic | 35.0% | |
| ! | ATGTTGGCAATTTTCCACAA+AGG | - | chr2_4:52582159-52582178 | Msa0334300:three_prime_UTR | 35.0% |
| TTAAGCCTTTGTATGATGCA+GGG | + | chr2_4:52582215-52582234 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | + | chr2_4:52582216-52582235 | None:intergenic | 35.0% | |
| TGAAGAGAAAAAGGCTTATC+AGG | + | chr2_4:52582342-52582361 | None:intergenic | 35.0% | |
| ! | AGCCTTTTTCTCTTCATCAA+AGG | - | chr2_4:52582346-52582365 | Msa0334300:exon | 35.0% |
| CTTAATATGGTGTAGGAGTA+TGG | - | chr2_4:52582589-52582608 | Msa0334300:intron | 35.0% | |
| ATGTTGTTAGTGCTAAGAGA+TGG | - | chr2_4:52582773-52582792 | Msa0334300:intron | 35.0% | |
| !! | CTAAGAGATGGTATTTTTGC+AGG | - | chr2_4:52582785-52582804 | Msa0334300:intron | 35.0% |
| ! | TGACATATACAGCTTGTTCT+TGG | - | chr2_4:52582825-52582844 | Msa0334300:intron | 35.0% |
| ! | GACATATACAGCTTGTTCTT+GGG | - | chr2_4:52582826-52582845 | Msa0334300:intron | 35.0% |
| ! | ACATATACAGCTTGTTCTTG+GGG | - | chr2_4:52582827-52582846 | Msa0334300:intron | 35.0% |
| TCCTTACTGAACAAGCAATA+TGG | - | chr2_4:52582865-52582884 | Msa0334300:intron | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | + | chr2_4:52582869-52582888 | None:intergenic | 35.0% | |
| ! | CAAGCAATATGGTTTGTCAA+AGG | - | chr2_4:52582876-52582895 | Msa0334300:intron | 35.0% |
| AGTTCCTTAACAACTTGATC+TGG | + | chr2_4:52582967-52582986 | None:intergenic | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | - | chr2_4:52582970-52582989 | Msa0334300:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | + | chr2_4:52583004-52583023 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | - | chr2_4:52583006-52583025 | Msa0334300:CDS | 35.0% | |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | - | chr2_4:52583155-52583174 | Msa0334300:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | - | chr2_4:52583174-52583193 | Msa0334300:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | - | chr2_4:52583175-52583194 | Msa0334300:CDS | 35.0% |
| TGACCTTAATGTTGTACAAG+AGG | - | chr2_4:52583232-52583251 | Msa0334300:CDS | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | - | chr2_4:52583233-52583252 | Msa0334300:CDS | 35.0% | |
| AACCCTCTTGTACAACATTA+AGG | + | chr2_4:52583238-52583257 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | + | chr2_4:52583547-52583566 | None:intergenic | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | + | chr2_4:52583558-52583577 | None:intergenic | 35.0% | |
| AAGTGTCTGAGTCTCTAATT+TGG | + | chr2_4:52583607-52583626 | None:intergenic | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | - | chr2_4:52583680-52583699 | Msa0334300:intron | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | - | chr2_4:52583835-52583854 | Msa0334300:intron | 35.0% | |
| ! | CTTGTTTCTTAGAAGGAAAC+AGG | + | chr2_4:52584041-52584060 | None:intergenic | 35.0% |
| ! | CTGTTTCCTTCTAAGAAACA+AGG | - | chr2_4:52584039-52584058 | Msa0334300:CDS | 35.0% |
| ! | TCACTACCTTGTTTCTTAGA+AGG | + | chr2_4:52584048-52584067 | None:intergenic | 35.0% |
| AATAGCCCTGCATCATACAA+AGG | - | chr2_4:52582207-52582226 | Msa0334300:three_prime_UTR | 40.0% | |
| GATGTTGCTGACCAAATTGA+AGG | - | chr2_4:52582684-52582703 | Msa0334300:intron | 40.0% | |
| GTTTGCTTGAGCCAATAACA+TGG | - | chr2_4:52582721-52582740 | Msa0334300:intron | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | + | chr2_4:52582958-52582977 | None:intergenic | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | - | chr2_4:52582960-52582979 | Msa0334300:CDS | 40.0% |
| TCCTTAACAACTTGATCTGG+TGG | + | chr2_4:52582964-52582983 | None:intergenic | 40.0% | |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | - | chr2_4:52583026-52583045 | Msa0334300:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | - | chr2_4:52583176-52583195 | Msa0334300:CDS | 40.0% |
| CAATTGATACCTGCTGGAAA+AGG | + | chr2_4:52583278-52583297 | None:intergenic | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | + | chr2_4:52583284-52583303 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | - | chr2_4:52583359-52583378 | Msa0334300:CDS | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | + | chr2_4:52583401-52583420 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | - | chr2_4:52583677-52583696 | Msa0334300:intron | 40.0% | |
| ! | ATTGCCTTCAACTTGTTCAG+TGG | + | chr2_4:52583725-52583744 | None:intergenic | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | - | chr2_4:52583825-52583844 | Msa0334300:intron | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | - | chr2_4:52583829-52583848 | Msa0334300:intron | 40.0% |
| GTGAATCCAATTGGATGGAA+TGG | - | chr2_4:52583834-52583853 | Msa0334300:intron | 40.0% | |
| TCAAAAGGATAAGGCAAGGT+AGG | + | chr2_4:52583980-52583999 | None:intergenic | 40.0% | |
| !! | ACAAGGTAGTGAAGTGCTTT+TGG | - | chr2_4:52584056-52584075 | Msa0334300:exon | 40.0% |
| !! | CAAGGTAGTGAAGTGCTTTT+GGG | - | chr2_4:52584057-52584076 | Msa0334300:exon | 40.0% |
| AATAGCCCTGCATCATACAA+AGG | - | chr2_4:52582207-52582226 | Msa0334300:three_prime_UTR | 40.0% | |
| GATGTTGCTGACCAAATTGA+AGG | - | chr2_4:52582684-52582703 | Msa0334300:intron | 40.0% | |
| GTTTGCTTGAGCCAATAACA+TGG | - | chr2_4:52582721-52582740 | Msa0334300:intron | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | + | chr2_4:52582958-52582977 | None:intergenic | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | - | chr2_4:52582960-52582979 | Msa0334300:CDS | 40.0% |
| TCCTTAACAACTTGATCTGG+TGG | + | chr2_4:52582964-52582983 | None:intergenic | 40.0% | |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | - | chr2_4:52583026-52583045 | Msa0334300:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | - | chr2_4:52583176-52583195 | Msa0334300:CDS | 40.0% |
| CAATTGATACCTGCTGGAAA+AGG | + | chr2_4:52583278-52583297 | None:intergenic | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | + | chr2_4:52583284-52583303 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | - | chr2_4:52583359-52583378 | Msa0334300:CDS | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | + | chr2_4:52583401-52583420 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | - | chr2_4:52583677-52583696 | Msa0334300:intron | 40.0% | |
| ! | ATTGCCTTCAACTTGTTCAG+TGG | + | chr2_4:52583725-52583744 | None:intergenic | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | - | chr2_4:52583825-52583844 | Msa0334300:intron | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | - | chr2_4:52583829-52583848 | Msa0334300:intron | 40.0% |
| GTGAATCCAATTGGATGGAA+TGG | - | chr2_4:52583834-52583853 | Msa0334300:intron | 40.0% | |
| TCAAAAGGATAAGGCAAGGT+AGG | + | chr2_4:52583980-52583999 | None:intergenic | 40.0% | |
| !! | ACAAGGTAGTGAAGTGCTTT+TGG | - | chr2_4:52584056-52584075 | Msa0334300:exon | 40.0% |
| !! | CAAGGTAGTGAAGTGCTTTT+GGG | - | chr2_4:52584057-52584076 | Msa0334300:exon | 40.0% |
| ! | TTTATGCAGGGTTCTGATGG+TGG | - | chr2_4:52583158-52583177 | Msa0334300:intron | 45.0% |
| ! | GCATCCACTGAACAAGTTGA+AGG | - | chr2_4:52583718-52583737 | Msa0334300:intron | 45.0% |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | - | chr2_4:52583729-52583748 | Msa0334300:intron | 45.0% |
| ATGCCAAGGATAGACAGTGA+AGG | - | chr2_4:52583743-52583762 | Msa0334300:intron | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | + | chr2_4:52583749-52583768 | None:intergenic | 45.0% | |
| ACAGTGAAGGAGTGATGTGT+GGG | - | chr2_4:52583756-52583775 | Msa0334300:intron | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | - | chr2_4:52583809-52583828 | Msa0334300:intron | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | + | chr2_4:52583824-52583843 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | + | chr2_4:52583843-52583862 | None:intergenic | 45.0% | |
| AAAGGATAAGGCAAGGTAGG+TGG | + | chr2_4:52583977-52583996 | None:intergenic | 45.0% | |
| ! | TTTATGCAGGGTTCTGATGG+TGG | - | chr2_4:52583158-52583177 | Msa0334300:intron | 45.0% |
| ! | GCATCCACTGAACAAGTTGA+AGG | - | chr2_4:52583718-52583737 | Msa0334300:intron | 45.0% |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | - | chr2_4:52583729-52583748 | Msa0334300:intron | 45.0% |
| ATGCCAAGGATAGACAGTGA+AGG | - | chr2_4:52583743-52583762 | Msa0334300:intron | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | + | chr2_4:52583749-52583768 | None:intergenic | 45.0% | |
| ACAGTGAAGGAGTGATGTGT+GGG | - | chr2_4:52583756-52583775 | Msa0334300:intron | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | - | chr2_4:52583809-52583828 | Msa0334300:intron | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | + | chr2_4:52583824-52583843 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | + | chr2_4:52583843-52583862 | None:intergenic | 45.0% | |
| AAAGGATAAGGCAAGGTAGG+TGG | + | chr2_4:52583977-52583996 | None:intergenic | 45.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | + | chr2_4:52582176-52582195 | None:intergenic | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | + | chr2_4:52582951-52582970 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | - | chr2_4:52583191-52583210 | Msa0334300:CDS | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | - | chr2_4:52583192-52583211 | Msa0334300:CDS | 50.0% |
| GATCACAACAGACCCATCAG+CGG | + | chr2_4:52583207-52583226 | None:intergenic | 50.0% | |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | - | chr2_4:52583266-52583285 | Msa0334300:CDS | 50.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | + | chr2_4:52583270-52583289 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | - | chr2_4:52583382-52583401 | Msa0334300:CDS | 50.0% | |
| !! | TCCCTTGGTGTCTTACCACT+CGG | + | chr2_4:52583386-52583405 | None:intergenic | 50.0% |
| GACAGTGAAGGAGTGATGTG+TGG | - | chr2_4:52583755-52583774 | Msa0334300:intron | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | - | chr2_4:52583757-52583776 | Msa0334300:intron | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | - | chr2_4:52583769-52583788 | Msa0334300:intron | 50.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | + | chr2_4:52582176-52582195 | None:intergenic | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | + | chr2_4:52582951-52582970 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | - | chr2_4:52583191-52583210 | Msa0334300:CDS | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | - | chr2_4:52583192-52583211 | Msa0334300:CDS | 50.0% |
| GATCACAACAGACCCATCAG+CGG | + | chr2_4:52583207-52583226 | None:intergenic | 50.0% | |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | - | chr2_4:52583266-52583285 | Msa0334300:CDS | 50.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | + | chr2_4:52583270-52583289 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | - | chr2_4:52583382-52583401 | Msa0334300:CDS | 50.0% | |
| !! | TCCCTTGGTGTCTTACCACT+CGG | + | chr2_4:52583386-52583405 | None:intergenic | 50.0% |
| GACAGTGAAGGAGTGATGTG+TGG | - | chr2_4:52583755-52583774 | Msa0334300:intron | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | - | chr2_4:52583757-52583776 | Msa0334300:intron | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | - | chr2_4:52583769-52583788 | Msa0334300:intron | 50.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | + | chr2_4:52582195-52582214 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | + | chr2_4:52582198-52582217 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | - | chr2_4:52582931-52582950 | Msa0334300:CDS | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | + | chr2_4:52582945-52582964 | None:intergenic | 55.0% | |
| CACTCGGACCAACCACATGT+TGG | + | chr2_4:52583370-52583389 | None:intergenic | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | - | chr2_4:52583368-52583387 | Msa0334300:CDS | 55.0% |
| GTCCGAGTGGTAAGACACCA+AGG | - | chr2_4:52583381-52583400 | Msa0334300:CDS | 55.0% | |
| ! | TAAGGCAAGGTAGGTGGTGG+TGG | + | chr2_4:52583971-52583990 | None:intergenic | 55.0% |
| GGATAAGGCAAGGTAGGTGG+TGG | + | chr2_4:52583974-52583993 | None:intergenic | 55.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | + | chr2_4:52582195-52582214 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | + | chr2_4:52582198-52582217 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | - | chr2_4:52582931-52582950 | Msa0334300:CDS | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | + | chr2_4:52582945-52582964 | None:intergenic | 55.0% | |
| CACTCGGACCAACCACATGT+TGG | + | chr2_4:52583370-52583389 | None:intergenic | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | - | chr2_4:52583368-52583387 | Msa0334300:CDS | 55.0% |
| GTCCGAGTGGTAAGACACCA+AGG | - | chr2_4:52583381-52583400 | Msa0334300:CDS | 55.0% | |
| ! | TAAGGCAAGGTAGGTGGTGG+TGG | + | chr2_4:52583971-52583990 | None:intergenic | 55.0% |
| GGATAAGGCAAGGTAGGTGG+TGG | + | chr2_4:52583974-52583993 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGTAGGGTTGGCT+AGG | + | chr2_4:52583948-52583967 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGTGGTGGTA+GGG | + | chr2_4:52583957-52583976 | None:intergenic | 60.0% |
| !! | AAGGTAGGTGGTGGTGGTGG+TGG | + | chr2_4:52583965-52583984 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTAGGGTTGGCT+AGG | + | chr2_4:52583948-52583967 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGTGGTGGTA+GGG | + | chr2_4:52583957-52583976 | None:intergenic | 60.0% |
| !! | AAGGTAGGTGGTGGTGGTGG+TGG | + | chr2_4:52583965-52583984 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGTGGTAGGGT+TGG | + | chr2_4:52583953-52583972 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGGT+AGG | + | chr2_4:52583958-52583977 | None:intergenic | 65.0% |
| !! | GTAGGTGGTGGTGGTGGTGG+TGG | + | chr2_4:52583962-52583981 | None:intergenic | 65.0% |
| !! | GGCAAGGTAGGTGGTGGTGG+TGG | + | chr2_4:52583968-52583987 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTAGGGT+TGG | + | chr2_4:52583953-52583972 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGGT+AGG | + | chr2_4:52583958-52583977 | None:intergenic | 65.0% |
| !! | GTAGGTGGTGGTGGTGGTGG+TGG | + | chr2_4:52583962-52583981 | None:intergenic | 65.0% |
| !! | GGCAAGGTAGGTGGTGGTGG+TGG | + | chr2_4:52583968-52583987 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 52582050 | 52584168 | 52582050 | ID=Msa0334300;Name=Msa0334300 |
| chr2_4 | mRNA | 52582050 | 52584168 | 52582050 | ID=Msa0334300-mRNA-1;Parent=Msa0334300;Name=Msa0334300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=109|1|1|1|0.75|0.6|5|266|253 |
| chr2_4 | exon | 52582050 | 52582089 | 52582050 | ID=Msa0334300-mRNA-1:exon:15831;Parent=Msa0334300-mRNA-1 |
| chr2_4 | exon | 52582124 | 52582540 | 52582124 | ID=Msa0334300-mRNA-1:exon:15830;Parent=Msa0334300-mRNA-1 |
| chr2_4 | exon | 52582931 | 52583051 | 52582931 | ID=Msa0334300-mRNA-1:exon:15829;Parent=Msa0334300-mRNA-1 |
| chr2_4 | exon | 52583171 | 52583411 | 52583171 | ID=Msa0334300-mRNA-1:exon:15828;Parent=Msa0334300-mRNA-1 |
| chr2_4 | exon | 52583851 | 52584168 | 52583851 | ID=Msa0334300-mRNA-1:exon:15827;Parent=Msa0334300-mRNA-1 |
| chr2_4 | five_prime_UTR | 52584060 | 52584168 | 52584060 | ID=Msa0334300-mRNA-1:five_prime_utr;Parent=Msa0334300-mRNA-1 |
| chr2_4 | CDS | 52583851 | 52584059 | 52583851 | ID=Msa0334300-mRNA-1:cds;Parent=Msa0334300-mRNA-1 |
| chr2_4 | CDS | 52583171 | 52583411 | 52583171 | ID=Msa0334300-mRNA-1:cds;Parent=Msa0334300-mRNA-1 |
| chr2_4 | CDS | 52582931 | 52583051 | 52582931 | ID=Msa0334300-mRNA-1:cds;Parent=Msa0334300-mRNA-1 |
| chr2_4 | CDS | 52582350 | 52582540 | 52582350 | ID=Msa0334300-mRNA-1:cds;Parent=Msa0334300-mRNA-1 |
| chr2_4 | three_prime_UTR | 52582124 | 52582349 | 52582124 | ID=Msa0334300-mRNA-1:three_prime_utr;Parent=Msa0334300-mRNA-1 |
| chr2_4 | three_prime_UTR | 52582050 | 52582089 | 52582050 | ID=Msa0334300-mRNA-1:three_prime_utr;Parent=Msa0334300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
