Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685730 | KEH30355.1 | 65.672 | 67 | 19 | 2 | 1 | 67 | 1 | 63 | 7.36e-17 | 80.1 |
| Msa0685730 | KEH30355.1 | 87.500 | 64 | 7 | 1 | 66 | 128 | 8 | 71 | 1.67e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685730 | A0A072UX01 | 65.672 | 67 | 19 | 2 | 1 | 67 | 1 | 63 | 3.51e-17 | 80.1 |
| Msa0685730 | A0A072UX01 | 87.500 | 64 | 7 | 1 | 66 | 128 | 8 | 71 | 7.98e-30 | 112 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044990 | Msa0685730 | 0.822968 | 1.782800e-53 | -8.615850e-47 |
| Msa0115870 | Msa0685730 | 0.818293 | 2.113850e-52 | -8.615850e-47 |
| Msa0645880 | Msa0685730 | 0.948020 | 2.154913e-106 | -8.615850e-47 |
| Msa0685730 | Msa0859120 | 0.825126 | 5.554611e-54 | -8.615850e-47 |
| Msa0685730 | Msa1420430 | 0.824623 | 7.299731e-54 | -8.615850e-47 |
| Msa0685730 | Msa1445370 | 0.824541 | 7.631333e-54 | -8.615850e-47 |
| Msa0216370 | Msa0685730 | 0.832315 | 1.014233e-55 | -8.615850e-47 |
| Msa0449880 | Msa0685730 | -0.808295 | 3.322305e-50 | -8.615850e-47 |
| Msa0256570 | Msa0685730 | 0.842694 | 2.211612e-58 | -8.615850e-47 |
| Msa0295710 | Msa0685730 | 0.843524 | 1.328626e-58 | -8.615850e-47 |
| Msa0334300 | Msa0685730 | 0.854699 | 1.034547e-61 | -8.615850e-47 |
| Msa0549530 | Msa0685730 | 0.928640 | 2.169331e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685730 | MtrunA17_Chr4g0034091 | 87.500 | 64 | 7 | 1 | 66 | 128 | 8 | 71 | 1.54e-33 | 112 |
| Msa0685730 | MtrunA17_Chr4g0034091 | 65.672 | 67 | 19 | 2 | 1 | 67 | 1 | 63 | 6.77e-21 | 80.1 |
| Msa0685730 | MtrunA17_Chr4g0034081 | 89.231 | 65 | 6 | 1 | 1 | 65 | 1 | 64 | 1.36e-32 | 109 |
| Msa0685730 | MtrunA17_Chr4g0034081 | 68.657 | 67 | 17 | 2 | 66 | 128 | 8 | 74 | 3.76e-24 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGTAGAGGTATGGGTT+GGG | 0.390310 | 4_4:-49991080 | Msa0685730:CDS |
| AGGCAACAGAGGTGTCTCTT+GGG | 0.412772 | 4_4:+49990947 | None:intergenic |
| TGGCTGCCATTGTAGAGGTA+TGG | 0.433651 | 4_4:-49991086 | Msa0685730:CDS |
| TTATGAATCGATTTGTCCCT+TGG | 0.457216 | 4_4:-49986020 | Msa0685730:CDS |
| GAGGCAACAGAGGTGTCTCT+TGG | 0.459401 | 4_4:+49990946 | None:intergenic |
| TGAGGTAGAGGTGTCTCTAC+GGG | 0.466303 | 4_4:+49986074 | None:intergenic |
| CATTGTAGAGGTATGGGTTG+GGG | 0.470237 | 4_4:-49991079 | Msa0685730:CDS |
| GAGAACAAAGGATTGCTGAT+AGG | 0.472885 | 4_4:+49986147 | None:intergenic |
| GCCATTGTAGAGGTATGGGT+TGG | 0.477069 | 4_4:-49991081 | Msa0685730:CDS |
| TGACATAGAGTGTGAGGTAG+AGG | 0.486740 | 4_4:+49986062 | None:intergenic |
| GTGAGGTAGAGGTGTCTCTA+CGG | 0.526707 | 4_4:+49986073 | None:intergenic |
| GGCAACAGAGGTGTCTCTTG+GGG | 0.546169 | 4_4:+49990948 | None:intergenic |
| CTCAAAATCCAAACAAGCAA+CGG | 0.548855 | 4_4:-49986127 | Msa0685730:CDS |
| GGCTGCCATTGTAGAGGTAT+GGG | 0.559523 | 4_4:-49991085 | Msa0685730:CDS |
| GTAATTGTAGAGGTATGGGT+TGG | 0.566786 | 4_4:-49986201 | Msa0685730:intron |
| AACAAAGGCTTGCTGTTGCT+AGG | 0.594023 | 4_4:+49991027 | None:intergenic |
| TGAAGAGTCAGAGGCAACAG+AGG | 0.597712 | 4_4:+49990936 | None:intergenic |
| ATTAATGGCTGCCATTGTAG+AGG | 0.614505 | 4_4:-49991091 | None:intergenic |
| AAAATATATATCATCACCAA+GGG | 0.626213 | 4_4:+49986004 | None:intergenic |
| TGACATAGTTGAAGAGTCAG+AGG | 0.626699 | 4_4:+49990927 | None:intergenic |
| CCCAACCCATACCTCTACAA+TGG | 0.629283 | 4_4:+49991080 | None:intergenic |
| CAAAACATCAAGGACAACGT+TGG | 0.630806 | 4_4:-49986102 | Msa0685730:CDS |
| TACCTCACACTCTATGTCAG+AGG | 0.632832 | 4_4:-49986058 | Msa0685730:CDS |
| TTCCTCTGACATAGAGTGTG+AGG | 0.633939 | 4_4:+49986056 | None:intergenic |
| CAAAATATATATCATCACCA+AGG | 0.639673 | 4_4:+49986003 | None:intergenic |
| CAAAACAAGAAGAAGAACGT+TGG | 0.651156 | 4_4:-49990979 | Msa0685730:CDS |
| AGCAACGGATCAAAACATCA+AGG | 0.651186 | 4_4:-49986112 | Msa0685730:CDS |
| TGACTCTTCAACTATGTCAG+AGG | 0.654740 | 4_4:-49990923 | Msa0685730:CDS |
| TCGATTCATAAGCAAACACA+CGG | 0.660296 | 4_4:+49986032 | None:intergenic |
| GCAACAGAGGTGTCTCTTGG+GGG | 0.674229 | 4_4:+49990949 | None:intergenic |
| GAGGTAGAGGTGTCTCTACG+GGG | 0.707691 | 4_4:+49986075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAATTTTTTTTTT+TGG | - | chr4_4:49990140-49990159 | Msa0685730:intron | 0.0% |
| !! | AAAATAAAAAACTTATGATT+GGG | + | chr4_4:49986535-49986554 | None:intergenic | 10.0% |
| !! | AAAAATAAAAAACTTATGAT+TGG | + | chr4_4:49986536-49986555 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTATAAATAGAA+CGG | - | chr4_4:49987780-49987799 | Msa0685730:intron | 10.0% |
| !!! | TGCAATTTTTATAATTTAAA+TGG | - | chr4_4:49988817-49988836 | Msa0685730:intron | 10.0% |
| !!! | TAATGGTTAAATTATATTTT+TGG | + | chr4_4:49988902-49988921 | None:intergenic | 10.0% |
| !!! | TTTTCAAACTTATAAAAATA+TGG | + | chr4_4:49989016-49989035 | None:intergenic | 10.0% |
| !!! | ATATTTTATTTTACAACTAT+AGG | + | chr4_4:49989041-49989060 | None:intergenic | 10.0% |
| !! | AAAAATCTTATTAATATATG+AGG | - | chr4_4:49989067-49989086 | Msa0685730:intron | 10.0% |
| !!! | GTATAAAAAAAATGTTATTT+TGG | - | chr4_4:49989648-49989667 | Msa0685730:intron | 10.0% |
| !! | ATCAAAAAACAAAAATATCA+AGG | - | chr4_4:49986632-49986651 | Msa0685730:intron | 15.0% |
| !! | TTAAGATATGTTTCAAATTA+AGG | - | chr4_4:49986688-49986707 | Msa0685730:intron | 15.0% |
| !!! | TTTTTTCTTTCAAATATCTT+AGG | + | chr4_4:49986751-49986770 | None:intergenic | 15.0% |
| !! | ATATCTTCAGATTATATAAA+AGG | + | chr4_4:49986794-49986813 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTCAAATATCTT+AGG | + | chr4_4:49986751-49986770 | None:intergenic | 15.0% |
| !!! | ACAAATTTTGTTTTTGTATA+GGG | + | chr4_4:49986956-49986975 | None:intergenic | 15.0% |
| !! | TATACAAAAACAAAATTTGT+GGG | - | chr4_4:49986956-49986975 | Msa0685730:intron | 15.0% |
| !!! | TAAAAATATTTTCCAACTAT+AGG | - | chr4_4:49987237-49987256 | Msa0685730:intron | 15.0% |
| !! | GTTATTTAATTGTAATAGAT+AGG | + | chr4_4:49987288-49987307 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTATATCTCTTA+TGG | + | chr4_4:49988114-49988133 | None:intergenic | 15.0% |
| !! | TCAACTCATTTAAATATAAT+TGG | + | chr4_4:49988242-49988261 | None:intergenic | 15.0% |
| !!! | GTTAATTTTAAGTTTCATTT+TGG | - | chr4_4:49988522-49988541 | Msa0685730:intron | 15.0% |
| !! | AACATTCATATATTATTAGT+TGG | + | chr4_4:49988637-49988656 | None:intergenic | 15.0% |
| !!! | TATATGAATGTTGAATATTT+TGG | - | chr4_4:49988645-49988664 | Msa0685730:intron | 15.0% |
| !! | TAAAATAAATGAATATATGC+TGG | + | chr4_4:49988993-49989012 | None:intergenic | 15.0% |
| !! | GATAAAATAGTTTAGATAAA+GGG | + | chr4_4:49989512-49989531 | None:intergenic | 15.0% |
| !! | TGATAAAATAGTTTAGATAA+AGG | + | chr4_4:49989513-49989532 | None:intergenic | 15.0% |
| !!! | TTTTTTTATACAAAGTCATA+AGG | + | chr4_4:49989639-49989658 | None:intergenic | 15.0% |
| !!! | AGTATAAAAATTTACTTTTG+CGG | - | chr4_4:49990333-49990352 | Msa0685730:intron | 15.0% |
| !! | TAATTAATGTATCTAAACTA+GGG | + | chr4_4:49990530-49990549 | None:intergenic | 15.0% |
| !! | ATAATTAATGTATCTAAACT+AGG | + | chr4_4:49990531-49990550 | None:intergenic | 15.0% |
| !!! | TATGTTACTTTTCATAGTAA+TGG | - | chr4_4:49986370-49986389 | Msa0685730:intron | 20.0% |
| !! | TGAAGATATGTTTCAAATTA+AGG | - | chr4_4:49986805-49986824 | Msa0685730:intron | 20.0% |
| !! | AACTACACAGATTATATAAA+AGG | + | chr4_4:49986911-49986930 | None:intergenic | 20.0% |
| !!! | CAAATTTTGTTTTTGTATAG+GGG | + | chr4_4:49986955-49986974 | None:intergenic | 20.0% |
| !!! | CACAAATTTTGTTTTTGTAT+AGG | + | chr4_4:49986957-49986976 | None:intergenic | 20.0% |
| !! | CTATACAAAAACAAAATTTG+TGG | - | chr4_4:49986955-49986974 | Msa0685730:intron | 20.0% |
| !! | TTTGTACATATTATAGTGTT+AGG | - | chr4_4:49987092-49987111 | Msa0685730:intron | 20.0% |
| !!! | TAAATAACTTGAAGTATTTC+TGG | - | chr4_4:49987300-49987319 | Msa0685730:intron | 20.0% |
| !!! | TATAGTGCTTTGAAATTTAT+GGG | + | chr4_4:49988061-49988080 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTTGATAGAGAT+TGG | + | chr4_4:49988290-49988309 | None:intergenic | 20.0% |
| !! | ATACTATTTCAAGCAAAAAA+AGG | + | chr4_4:49988947-49988966 | None:intergenic | 20.0% |
| !!! | AGTAATAGAAAAAGCATTAT+TGG | - | chr4_4:49989388-49989407 | Msa0685730:intron | 20.0% |
| !! | TTTAGATAAAGGGTAAAAAT+AGG | + | chr4_4:49989502-49989521 | None:intergenic | 20.0% |
| !! | CTGAAAGAAAAAAAATCAAT+TGG | - | chr4_4:49989749-49989768 | Msa0685730:intron | 20.0% |
| !! | ATTATTGTGATATGTTTGAT+AGG | - | chr4_4:49989818-49989837 | Msa0685730:intron | 20.0% |
| !!! | CAAAAATATTCGATTTTTTG+CGG | - | chr4_4:49990444-49990463 | Msa0685730:intron | 20.0% |
| !! | AATTAATGTATCTAAACTAG+GGG | + | chr4_4:49990529-49990548 | None:intergenic | 20.0% |
| !! | CATATATAATAAGGTTATGT+TGG | + | chr4_4:49990791-49990810 | None:intergenic | 20.0% |
| !! | AATATATGAATGAATCAATG+GGG | + | chr4_4:49990814-49990833 | None:intergenic | 20.0% |
| !! | CAATATATGAATGAATCAAT+GGG | + | chr4_4:49990815-49990834 | None:intergenic | 20.0% |
| !! | TCAATATATGAATGAATCAA+TGG | + | chr4_4:49990816-49990835 | None:intergenic | 20.0% |
| !! | AAAAATGTTTGTAATTGTAG+AGG | - | chr4_4:49990893-49990912 | Msa0685730:intron | 20.0% |
| ! | ATTAACATATACTATCACCA+AGG | + | chr4_4:49986239-49986258 | None:intergenic | 25.0% |
| !!! | CACGCAAAATTTTAAGATAT+TGG | + | chr4_4:49986445-49986464 | None:intergenic | 25.0% |
| !! | TAAAATTTTGCGTGAAAATG+TGG | - | chr4_4:49986451-49986470 | Msa0685730:intron | 25.0% |
| !!! | AATATTTTCAAGAGACCAAA+GGG | + | chr4_4:49986608-49986627 | None:intergenic | 25.0% |
| !!! | AAATATTTTCAAGAGACCAA+AGG | + | chr4_4:49986609-49986628 | None:intergenic | 25.0% |
| !! | CAAATATCTTAGGATTTGTT+TGG | + | chr4_4:49986741-49986760 | None:intergenic | 25.0% |
| !! | CAAATATCTTAGGATTTGTT+TGG | + | chr4_4:49986741-49986760 | None:intergenic | 25.0% |
| ! | ATGTATGAAAAAGAGAGAAA+CGG | + | chr4_4:49987058-49987077 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCTCACATGACA+AGG | - | chr4_4:49987446-49987465 | Msa0685730:intron | 25.0% |
| ! | TGTCAAGAAAAAAATCAATC+AGG | + | chr4_4:49987474-49987493 | None:intergenic | 25.0% |
| ! | TTGATTAAGTAAAACTCCAA+AGG | - | chr4_4:49987567-49987586 | Msa0685730:intron | 25.0% |
| !! | TGTTTTATAAATAGAACGGA+AGG | - | chr4_4:49987784-49987803 | Msa0685730:intron | 25.0% |
| !! | GTTTTATAAATAGAACGGAA+GGG | - | chr4_4:49987785-49987804 | Msa0685730:intron | 25.0% |
| ! | ATAAAATATATCAGTGACAG+TGG | - | chr4_4:49987809-49987828 | Msa0685730:intron | 25.0% |
| ! | TAAAATATATCAGTGACAGT+GGG | - | chr4_4:49987810-49987829 | Msa0685730:intron | 25.0% |
| ! | TATTGTCCGAAATTTATCAA+GGG | + | chr4_4:49987900-49987919 | None:intergenic | 25.0% |
| ! | ATAAATTTCGGACAATACTT+GGG | - | chr4_4:49987903-49987922 | Msa0685730:intron | 25.0% |
| !!! | CTATAGTGCTTTGAAATTTA+TGG | + | chr4_4:49988062-49988081 | None:intergenic | 25.0% |
| ! | AGTATCACGATCATTATTAA+CGG | - | chr4_4:49988080-49988099 | Msa0685730:intron | 25.0% |
| ! | TATATGTTTACATATCCTGA+TGG | + | chr4_4:49988421-49988440 | None:intergenic | 25.0% |
| ! | AATAAAATGAAACAAGCTCA+AGG | + | chr4_4:49988550-49988569 | None:intergenic | 25.0% |
| !!! | ATGTTATTTTCGTTTCGTAT+TGG | - | chr4_4:49988611-49988630 | Msa0685730:intron | 25.0% |
| ! | AATGAAACCAACAAAACTTA+AGG | - | chr4_4:49988844-49988863 | Msa0685730:intron | 25.0% |
| ! | ATGAAACCAACAAAACTTAA+GGG | - | chr4_4:49988845-49988864 | Msa0685730:intron | 25.0% |
| !!! | TTTTATCCCTTAAGTTTTGT+TGG | + | chr4_4:49988854-49988873 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTAAGTTCGTTTT+AGG | + | chr4_4:49988883-49988902 | None:intergenic | 25.0% |
| !! | TTTTCTAAACAATTCGTTCT+TGG | - | chr4_4:49989295-49989314 | Msa0685730:intron | 25.0% |
| ! | AAGTAGATTATTAGTTCAAG+TGG | + | chr4_4:49989334-49989353 | None:intergenic | 25.0% |
| ! | ACTTGAACTAATAATCTACT+TGG | - | chr4_4:49989333-49989352 | Msa0685730:intron | 25.0% |
| !!! | AATAGAAAAAGCATTATTGG+AGG | - | chr4_4:49989391-49989410 | Msa0685730:intron | 25.0% |
| ! | CTCTTAATAATTACTTTCTC+CGG | - | chr4_4:49989879-49989898 | Msa0685730:intron | 25.0% |
| ! | TAGATATATGCGGTTTAATT+TGG | - | chr4_4:49990044-49990063 | Msa0685730:intron | 25.0% |
| !!! | AAAAATTTACTTTTGCGGTT+CGG | - | chr4_4:49990338-49990357 | Msa0685730:intron | 25.0% |
| !! | CGCAAAAAATCGAATATTTT+TGG | + | chr4_4:49990446-49990465 | None:intergenic | 25.0% |
| !!! | ATCGATTTGCAGTTTTATTT+TGG | - | chr4_4:49990484-49990503 | Msa0685730:intron | 25.0% |
| !!! | TTTGCAGTTTTATTTTGGAT+CGG | - | chr4_4:49990489-49990508 | Msa0685730:intron | 25.0% |
| ! | TAATGTGAGAAACTAAACTA+GGG | + | chr4_4:49990754-49990773 | None:intergenic | 25.0% |
| ! | TTAATGTGAGAAACTAAACT+AGG | + | chr4_4:49990755-49990774 | None:intergenic | 25.0% |
| ! | ATATAATAAGGTTATGTTGG+AGG | + | chr4_4:49990788-49990807 | None:intergenic | 25.0% |
| !! | TGTTTCTCTTTTTCTTTGTT+TGG | + | chr4_4:49990853-49990872 | None:intergenic | 25.0% |
| !!! | TGTTTGGCTTTTGAAAACAA+AGG | + | chr4_4:49986095-49986114 | None:intergenic | 30.0% |
| ! | TTGTTTTCAAAAGCCAAACA+AGG | - | chr4_4:49986095-49986114 | Msa0685730:CDS | 30.0% |
| GCAAGATTAATTAAGATGCA+TGG | - | chr4_4:49986307-49986326 | Msa0685730:intron | 30.0% | |
| AAACAACCACGTAAATAAGT+TGG | + | chr4_4:49986480-49986499 | None:intergenic | 30.0% | |
| TTATGTGCATAAAAGTTCAG+AGG | - | chr4_4:49986555-49986574 | Msa0685730:intron | 30.0% | |
| TTGGATTGTTAGAAGTTGAA+TGG | + | chr4_4:49986722-49986741 | None:intergenic | 30.0% | |
| TTGGATTGTTAGAAGTTGAA+TGG | + | chr4_4:49986722-49986741 | None:intergenic | 30.0% | |
| TGTATGAAAAAGAGAGAAAC+GGG | + | chr4_4:49987057-49987076 | None:intergenic | 30.0% | |
| AGAGTTTACTCGTAATTTCT+TGG | + | chr4_4:49987336-49987355 | None:intergenic | 30.0% | |
| TAAGTAAAACTCCAAAGGTT+TGG | - | chr4_4:49987572-49987591 | Msa0685730:intron | 30.0% | |
| TTACTATTAGACCAAACCTT+TGG | + | chr4_4:49987586-49987605 | None:intergenic | 30.0% | |
| AAATTTATCAAGGGCAAAAG+GGG | + | chr4_4:49987891-49987910 | None:intergenic | 30.0% | |
| GAAATTTATCAAGGGCAAAA+GGG | + | chr4_4:49987892-49987911 | None:intergenic | 30.0% | |
| ! | CTTTTGCCCTTGATAAATTT+CGG | - | chr4_4:49987891-49987910 | Msa0685730:intron | 30.0% |
| GTATTGTCCGAAATTTATCA+AGG | + | chr4_4:49987901-49987920 | None:intergenic | 30.0% | |
| GATAAATTTCGGACAATACT+TGG | - | chr4_4:49987902-49987921 | Msa0685730:intron | 30.0% | |
| GTATCACGATCATTATTAAC+GGG | - | chr4_4:49988081-49988100 | Msa0685730:intron | 30.0% | |
| ATTTATATCTCTTATGGAGC+TGG | + | chr4_4:49988108-49988127 | None:intergenic | 30.0% | |
| ACAATAGAGTTTGGAAAAGT+GGG | - | chr4_4:49988389-49988408 | Msa0685730:intron | 30.0% | |
| !!! | TATTTTGGTCCCTTAAGTTA+TGG | - | chr4_4:49988660-49988679 | Msa0685730:intron | 30.0% |
| AACGTTGTACCATAACTTAA+GGG | + | chr4_4:49988672-49988691 | None:intergenic | 30.0% | |
| TAACGTTGTACCATAACTTA+AGG | + | chr4_4:49988673-49988692 | None:intergenic | 30.0% | |
| ! | TCTTAACCCTCCAATTTTAA+GGG | - | chr4_4:49989187-49989206 | Msa0685730:intron | 30.0% |
| ! | CTTTTACCCTTAAAATTGGA+GGG | + | chr4_4:49989196-49989215 | None:intergenic | 30.0% |
| ! | TCTTTTACCCTTAAAATTGG+AGG | + | chr4_4:49989197-49989216 | None:intergenic | 30.0% |
| ! | GAGTCTTTTACCCTTAAAAT+TGG | + | chr4_4:49989200-49989219 | None:intergenic | 30.0% |
| GAGAAAAATTCAACCCAAAA+GGG | + | chr4_4:49989478-49989497 | None:intergenic | 30.0% | |
| AGAGAAAAATTCAACCCAAA+AGG | + | chr4_4:49989479-49989498 | None:intergenic | 30.0% | |
| AAATAGTCATCATAGCTGAA+AGG | - | chr4_4:49989778-49989797 | Msa0685730:intron | 30.0% | |
| ! | GAGTTGAAATGATGTCTTTT+GGG | + | chr4_4:49989862-49989881 | None:intergenic | 30.0% |
| ! | AGAGTTGAAATGATGTCTTT+TGG | + | chr4_4:49989863-49989882 | None:intergenic | 30.0% |
| TCCAAAATAAAAATCACGTG+CGG | - | chr4_4:49989981-49990000 | Msa0685730:intron | 30.0% | |
| AAATCCGATCTAGATATATG+CGG | - | chr4_4:49990034-49990053 | Msa0685730:intron | 30.0% | |
| TAAACCGCATATATCTAGAT+CGG | + | chr4_4:49990041-49990060 | None:intergenic | 30.0% | |
| !! | ATATGCGGTTTAATTTGGAT+CGG | - | chr4_4:49990049-49990068 | Msa0685730:intron | 30.0% |
| !!! | GTTTAATTTGGATCGGTTTT+TGG | - | chr4_4:49990056-49990075 | Msa0685730:intron | 30.0% |
| !! | TTGCGGTTTTCAGTTTTTTT+TGG | - | chr4_4:49990461-49990480 | Msa0685730:intron | 30.0% |
| AAGTATTTCATAGCGGTAAA+AGG | - | chr4_4:49990597-49990616 | Msa0685730:intron | 30.0% | |
| ! | ATGTTTTTCGTGTATTGGAT+TGG | + | chr4_4:49990678-49990697 | None:intergenic | 30.0% |
| ! | GAAACATGTTTTTCGTGTAT+TGG | + | chr4_4:49990683-49990702 | None:intergenic | 30.0% |
| AATGTGAGAAACTAAACTAG+GGG | + | chr4_4:49990753-49990772 | None:intergenic | 30.0% | |
| TCAATGGGGCATATATAATA+AGG | + | chr4_4:49990800-49990819 | None:intergenic | 30.0% | |
| TGTTTGTAATTGTAGAGGTA+TGG | - | chr4_4:49990898-49990917 | Msa0685730:intron | 30.0% | |
| ! | GTTTGTAATTGTAGAGGTAT+GGG | - | chr4_4:49990899-49990918 | Msa0685730:intron | 30.0% |
| !! | TGTTTGGATTTTGAGAACAA+AGG | + | chr4_4:49990972-49990991 | None:intergenic | 30.0% |
| CAAAACAAGAAGAAGAACGT+TGG | - | chr4_4:49986125-49986144 | Msa0685730:CDS | 35.0% | |
| !! | TTATGGATCGATTTGTTCCT+TGG | - | chr4_4:49986219-49986238 | Msa0685730:intron | 35.0% |
| TGGTATCCAACTTATTTACG+TGG | - | chr4_4:49986471-49986490 | Msa0685730:intron | 35.0% | |
| !! | ATTGTTGAAAAAGTGCCCTT+TGG | - | chr4_4:49986590-49986609 | Msa0685730:intron | 35.0% |
| AAATTTGTGGGACTGTGAAA+AGG | - | chr4_4:49986968-49986987 | Msa0685730:intron | 35.0% | |
| TGATCATAGACTCATGAAGT+TGG | + | chr4_4:49987013-49987032 | None:intergenic | 35.0% | |
| ! | GTTAGGTGTTTGCAGTTTTT+AGG | - | chr4_4:49987109-49987128 | Msa0685730:intron | 35.0% |
| AAAACTATTGTTCCAGCACT+AGG | + | chr4_4:49987147-49987166 | None:intergenic | 35.0% | |
| ! | TTTTTGCTTTGACCAAGTGT+TGG | - | chr4_4:49987164-49987183 | Msa0685730:intron | 35.0% |
| TCAACTATTGTTCCAACACT+TGG | + | chr4_4:49987179-49987198 | None:intergenic | 35.0% | |
| CCTAAGTTAACTAGAGGTTT+AGG | + | chr4_4:49987264-49987283 | None:intergenic | 35.0% | |
| CCTAAACCTCTAGTTAACTT+AGG | - | chr4_4:49987261-49987280 | Msa0685730:intron | 35.0% | |
| ATAGGACCTAAGTTAACTAG+AGG | + | chr4_4:49987270-49987289 | None:intergenic | 35.0% | |
| CGAAATTTATCAAGGGCAAA+AGG | + | chr4_4:49987893-49987912 | None:intergenic | 35.0% | |
| !! | AGTGCTTTGAAATTTATGGG+TGG | + | chr4_4:49988058-49988077 | None:intergenic | 35.0% |
| ! | TTTTCCAAACTCTATTGTGG+CGG | + | chr4_4:49988387-49988406 | None:intergenic | 35.0% |
| ! | CACTTTTCCAAACTCTATTG+TGG | + | chr4_4:49988390-49988409 | None:intergenic | 35.0% |
| CACAATAGAGTTTGGAAAAG+TGG | - | chr4_4:49988388-49988407 | Msa0685730:intron | 35.0% | |
| CAATAGAGTTTGGAAAAGTG+GGG | - | chr4_4:49988390-49988409 | Msa0685730:intron | 35.0% | |
| AACGTAACTTATGGGTAACT+TGG | - | chr4_4:49988462-49988481 | Msa0685730:intron | 35.0% | |
| ! | GGTACAACGTTAAGACATTT+TGG | - | chr4_4:49988681-49988700 | Msa0685730:intron | 35.0% |
| ACTTCGATATTGCAACTCTA+AGG | + | chr4_4:49989119-49989138 | None:intergenic | 35.0% | |
| ! | GTCTTAACCCTCCAATTTTA+AGG | - | chr4_4:49989186-49989205 | Msa0685730:intron | 35.0% |
| TCTAAACAATTCGTTCTTGG+TGG | - | chr4_4:49989298-49989317 | Msa0685730:intron | 35.0% | |
| ! | ATAAAGGAGAAACACCCTTT+TGG | - | chr4_4:49989461-49989480 | Msa0685730:intron | 35.0% |
| ! | TAAAGGAGAAACACCCTTTT+GGG | - | chr4_4:49989462-49989481 | Msa0685730:intron | 35.0% |
| ! | CCTTCTCTCATATTTAGAAC+CGG | + | chr4_4:49989901-49989920 | None:intergenic | 35.0% |
| ATGAGAGAAGGTAGTTTAGA+AGG | - | chr4_4:49989910-49989929 | Msa0685730:intron | 35.0% | |
| TGAGAGAAGGTAGTTTAGAA+GGG | - | chr4_4:49989911-49989930 | Msa0685730:intron | 35.0% | |
| !!! | TTCGGTTTGAATTGGTTTTG+AGG | - | chr4_4:49989943-49989962 | Msa0685730:intron | 35.0% |
| !! | ACCGCACGTGATTTTTATTT+TGG | + | chr4_4:49989985-49990004 | None:intergenic | 35.0% |
| AAAAACTGATCCGATCATAG+CGG | - | chr4_4:49990393-49990412 | Msa0685730:intron | 35.0% | |
| TTAGGAAAAACCGCTATGAT+CGG | + | chr4_4:49990406-49990425 | None:intergenic | 35.0% | |
| ! | GATGTGTTTGCATGTTGTTT+AGG | + | chr4_4:49990424-49990443 | None:intergenic | 35.0% |
| !! | CCTGAAGAAGTATTTCATAG+CGG | - | chr4_4:49990590-49990609 | Msa0685730:intron | 35.0% |
| GTTTGCGAGGAATATTCTAT+GGG | + | chr4_4:49990643-49990662 | None:intergenic | 35.0% | |
| AGTTTGCGAGGAATATTCTA+TGG | + | chr4_4:49990644-49990663 | None:intergenic | 35.0% | |
| ! | GAAATAGTCTAAAGTTTGCG+AGG | + | chr4_4:49990656-49990675 | None:intergenic | 35.0% |
| !! | TAAACTAGGGGCATTACATT+GGG | + | chr4_4:49990741-49990760 | None:intergenic | 35.0% |
| CTCAAAATCCAAACAAGCAA+CGG | - | chr4_4:49990977-49990996 | Msa0685730:CDS | 35.0% | |
| TCGATTCATAAGCAAACACA+CGG | + | chr4_4:49991075-49991094 | None:intergenic | 35.0% | |
| !! | TTATGAATCGATTTGTCCCT+TGG | - | chr4_4:49991084-49991103 | Msa0685730:CDS | 35.0% |
| TGACATAGTTGAAGAGTCAG+AGG | + | chr4_4:49986180-49986199 | None:intergenic | 40.0% | |
| TGACTCTTCAACTATGTCAG+AGG | - | chr4_4:49986181-49986200 | Msa0685730:CDS | 40.0% | |
| TCGATCCATAAGCAAACACA+CGG | + | chr4_4:49986210-49986229 | None:intergenic | 40.0% | |
| AGAGGTTTAGGTCCTATAGT+TGG | + | chr4_4:49987252-49987271 | None:intergenic | 40.0% | |
| !! | CAATACTTGGGTGCCATTAA+TGG | - | chr4_4:49987915-49987934 | Msa0685730:intron | 40.0% |
| TAATGGCACGGTACCATTAA+TGG | + | chr4_4:49987931-49987950 | None:intergenic | 40.0% | |
| !! | TAATGGCATGGTGCCATTAA+TGG | - | chr4_4:49988022-49988041 | Msa0685730:intron | 40.0% |
| GAAATTTATGGGTGGCACTT+TGG | + | chr4_4:49988050-49988069 | None:intergenic | 40.0% | |
| TAACTCGATACTCTGACTGA+TGG | + | chr4_4:49988190-49988209 | None:intergenic | 40.0% | |
| TACTTGTGTCTCAGTCATGT+TGG | - | chr4_4:49988208-49988227 | Msa0685730:intron | 40.0% | |
| ACTTGTGTCTCAGTCATGTT+GGG | - | chr4_4:49988209-49988228 | Msa0685730:intron | 40.0% | |
| AAAAGTGGGGTATAACCATC+AGG | - | chr4_4:49988403-49988422 | Msa0685730:intron | 40.0% | |
| TGCTGAAGCAACGTAACTTA+TGG | - | chr4_4:49988453-49988472 | Msa0685730:intron | 40.0% | |
| GCTGAAGCAACGTAACTTAT+GGG | - | chr4_4:49988454-49988473 | Msa0685730:intron | 40.0% | |
| !! | AAAAGCATTATTGGAGGAGC+AGG | - | chr4_4:49989397-49989416 | Msa0685730:intron | 40.0% |
| !! | CCGGTTCTAAATATGAGAGA+AGG | - | chr4_4:49989898-49989917 | Msa0685730:intron | 40.0% |
| !!! | TTTACTTTTGCGGTTCGGTT+TGG | - | chr4_4:49990343-49990362 | Msa0685730:intron | 40.0% |
| !!! | GGTTCGGTTCAGTTTTGAAA+AGG | - | chr4_4:49990364-49990383 | Msa0685730:intron | 40.0% |
| ! | GCTATGATCGGATCAGTTTT+TGG | + | chr4_4:49990394-49990413 | None:intergenic | 40.0% |
| CCGCTATGAAATACTTCTTC+AGG | + | chr4_4:49990593-49990612 | None:intergenic | 40.0% | |
| !! | CTAAACTAGGGGCATTACAT+TGG | + | chr4_4:49990742-49990761 | None:intergenic | 40.0% |
| ! | GTAATTGTAGAGGTATGGGT+TGG | - | chr4_4:49990903-49990922 | Msa0685730:intron | 40.0% |
| GAGAACAAAGGATTGCTGAT+AGG | + | chr4_4:49990960-49990979 | None:intergenic | 40.0% | |
| !! | GTTTTGATCCGTTGCTTGTT+TGG | + | chr4_4:49990988-49991007 | None:intergenic | 40.0% |
| AGCAACGGATCAAAACATCA+AGG | - | chr4_4:49990992-49991011 | Msa0685730:CDS | 40.0% | |
| CAAAACATCAAGGACAACGT+TGG | - | chr4_4:49991002-49991021 | Msa0685730:CDS | 40.0% | |
| ! | CCATTGTAGAGGTATGGGTT+GGG | - | chr4_4:49986024-49986043 | Msa0685730:CDS | 45.0% |
| ! | CATTGTAGAGGTATGGGTTG+GGG | - | chr4_4:49986025-49986044 | Msa0685730:CDS | 45.0% |
| !! | AACAAAGGCTTGCTGTTGCT+AGG | + | chr4_4:49986080-49986099 | None:intergenic | 45.0% |
| !! | GTTTTGATCTGCGCCTTGTT+TGG | + | chr4_4:49986111-49986130 | None:intergenic | 45.0% |
| GAAAAAGAGAGAAACGGGAG+AGG | + | chr4_4:49987052-49987071 | None:intergenic | 45.0% | |
| !! | CATTGTTTTGTGCCTAGTGC+TGG | - | chr4_4:49987132-49987151 | Msa0685730:intron | 45.0% |
| AGTCAAGTCTTGAGTGCAAG+AGG | - | chr4_4:49987608-49987627 | Msa0685730:intron | 45.0% | |
| TCGAGCTCTGCTAGTGTTTA+TGG | - | chr4_4:49987639-49987658 | Msa0685730:intron | 45.0% | |
| AGCTCTGCTAGTGTTTATGG+AGG | - | chr4_4:49987642-49987661 | Msa0685730:intron | 45.0% | |
| GCTCTGCTAGTGTTTATGGA+GGG | - | chr4_4:49987643-49987662 | Msa0685730:intron | 45.0% | |
| CATCAATGGCCAGGATGTAA+TGG | + | chr4_4:49987948-49987967 | None:intergenic | 45.0% | |
| CATTACATCCTGGCCATTGA+TGG | - | chr4_4:49987946-49987965 | Msa0685730:intron | 45.0% | |
| GTGTGTGTGATGTGTGTGTT+GGG | + | chr4_4:49987974-49987993 | None:intergenic | 45.0% | |
| TGTGTGTGTGATGTGTGTGT+TGG | + | chr4_4:49987975-49987994 | None:intergenic | 45.0% | |
| ACATCACACACACACACTTG+AGG | - | chr4_4:49987981-49988000 | Msa0685730:intron | 45.0% | |
| AATGTGTGGCCCTGATCTAA+TGG | - | chr4_4:49988005-49988024 | Msa0685730:intron | 45.0% | |
| !! | TGGCACTTTGGTGCCATTAA+TGG | + | chr4_4:49988038-49988057 | None:intergenic | 45.0% |
| ACTCCGTCTAAAGGGCAAAA+GGG | + | chr4_4:49988162-49988181 | None:intergenic | 45.0% | |
| TACTCCGTCTAAAGGGCAAA+AGG | + | chr4_4:49988163-49988182 | None:intergenic | 45.0% | |
| TTTGCCCTTTAGACGGAGTA+TGG | - | chr4_4:49988163-49988182 | Msa0685730:intron | 45.0% | |
| TGGTCCATACTCCGTCTAAA+GGG | + | chr4_4:49988170-49988189 | None:intergenic | 45.0% | |
| ATGGTCCATACTCCGTCTAA+AGG | + | chr4_4:49988171-49988190 | None:intergenic | 45.0% | |
| CTTGTGTCTCAGTCATGTTG+GGG | - | chr4_4:49988210-49988229 | Msa0685730:intron | 45.0% | |
| !! | GTAGTTTAGAAGGGTGTTCG+CGG | - | chr4_4:49989920-49989939 | Msa0685730:intron | 45.0% |
| AAATCACGTGCGGTTCAGTT+CGG | - | chr4_4:49989991-49990010 | Msa0685730:intron | 45.0% | |
| !!! | TTTTGCGGTTCGGTTTGGTT+CGG | - | chr4_4:49990348-49990367 | Msa0685730:intron | 45.0% |
| TGACATAGAGTGTGAGGTAG+AGG | + | chr4_4:49991045-49991064 | None:intergenic | 45.0% | |
| TACCTCACACTCTATGTCAG+AGG | - | chr4_4:49991046-49991065 | Msa0685730:CDS | 45.0% | |
| TTCCTCTGACATAGAGTGTG+AGG | + | chr4_4:49991051-49991070 | None:intergenic | 45.0% | |
| !!! | AAATAATATTAATTTTCTAA+TGG | + | chr4_4:49988919-49988938 | None:intergenic | 5.0% |
| !! | TATTATATAACAATATATAA+AGG | - | chr4_4:49989445-49989464 | Msa0685730:intron | 5.0% |
| TGGCTGCCATTGTAGAGGTA+TGG | - | chr4_4:49986018-49986037 | Msa0685730:CDS | 50.0% | |
| ! | GGCTGCCATTGTAGAGGTAT+GGG | - | chr4_4:49986019-49986038 | Msa0685730:CDS | 50.0% |
| ! | GCCATTGTAGAGGTATGGGT+TGG | - | chr4_4:49986023-49986042 | Msa0685730:CDS | 50.0% |
| CCCAACCCATACCTCTACAA+TGG | + | chr4_4:49986027-49986046 | None:intergenic | 50.0% | |
| !! | AGGCAACAGAGGTGTCTCTT+GGG | + | chr4_4:49986160-49986179 | None:intergenic | 50.0% |
| TGAAGAGTCAGAGGCAACAG+AGG | + | chr4_4:49986171-49986190 | None:intergenic | 50.0% | |
| GGCAACCGTGTGTTTGCTTA+TGG | - | chr4_4:49986202-49986221 | Msa0685730:intron | 50.0% | |
| TCAAGGGCAAAAGGGGAAGA+TGG | + | chr4_4:49987884-49987903 | None:intergenic | 50.0% | |
| ATGGCCAGGATGTAATGGCA+CGG | + | chr4_4:49987943-49987962 | None:intergenic | 50.0% | |
| ! | TGTGTGTTGGGTGCCATCAA+TGG | + | chr4_4:49987962-49987981 | None:intergenic | 50.0% |
| CACACACTTGAGGCAATGTG+TGG | - | chr4_4:49987991-49988010 | Msa0685730:intron | 50.0% | |
| GGCACCATGCCATTAGATCA+GGG | + | chr4_4:49988017-49988036 | None:intergenic | 50.0% | |
| TGGCACCATGCCATTAGATC+AGG | + | chr4_4:49988018-49988037 | None:intergenic | 50.0% | |
| CTAAAGGGCAAAAGGGGAGA+TGG | + | chr4_4:49988155-49988174 | None:intergenic | 50.0% | |
| ! | CTCCCCTTTTGCCCTTTAGA+CGG | - | chr4_4:49988156-49988175 | Msa0685730:intron | 50.0% |
| CTCCGTCTAAAGGGCAAAAG+GGG | + | chr4_4:49988161-49988180 | None:intergenic | 50.0% | |
| CTGACCGCCACAATAGAGTT+TGG | - | chr4_4:49988380-49988399 | Msa0685730:intron | 50.0% | |
| !! | TTAGAAGGGTGTTCGCGGTT+CGG | - | chr4_4:49989925-49989944 | Msa0685730:intron | 50.0% |
| !! | GTTCGCGGTTCGGTTTGAAT+TGG | - | chr4_4:49989935-49989954 | Msa0685730:intron | 50.0% |
| ATTGGGTGCACCTTGGAATG+TGG | + | chr4_4:49990724-49990743 | None:intergenic | 50.0% | |
| GCATTACATTGGGTGCACCT+TGG | + | chr4_4:49990731-49990750 | None:intergenic | 50.0% | |
| !! | TGAGGTAGAGGTGTCTCTAC+GGG | + | chr4_4:49991033-49991052 | None:intergenic | 50.0% |
| !! | GTGAGGTAGAGGTGTCTCTA+CGG | + | chr4_4:49991034-49991053 | None:intergenic | 50.0% |
| !! | GCAACAGAGGTGTCTCTTGG+GGG | + | chr4_4:49986158-49986177 | None:intergenic | 55.0% |
| !! | GGCAACAGAGGTGTCTCTTG+GGG | + | chr4_4:49986159-49986178 | None:intergenic | 55.0% |
| !! | GAGGCAACAGAGGTGTCTCT+TGG | + | chr4_4:49986161-49986180 | None:intergenic | 55.0% |
| ! | GGTACCGTGCCATTACATCC+TGG | - | chr4_4:49987936-49987955 | Msa0685730:intron | 55.0% |
| GTGGCCCTGATCTAATGGCA+TGG | - | chr4_4:49988010-49988029 | Msa0685730:intron | 55.0% | |
| AAGGGCAAAAGGGGAGATGG+AGG | + | chr4_4:49988152-49988171 | None:intergenic | 55.0% | |
| CTGTGTGCCACCACATTCCA+AGG | - | chr4_4:49990711-49990730 | Msa0685730:intron | 55.0% | |
| !! | GAGGTAGAGGTGTCTCTACG+GGG | + | chr4_4:49991032-49991051 | None:intergenic | 55.0% |
| ! | GTTGGGTGCCATCAATGGCC+AGG | + | chr4_4:49987957-49987976 | None:intergenic | 60.0% |
| GGGTGCACCTTGGAATGTGG+TGG | + | chr4_4:49990721-49990740 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49986017 | 49991109 | 49986017 | ID=Msa0685730;Name=Msa0685730 |
| chr4_4 | mRNA | 49986017 | 49991109 | 49986017 | ID=Msa0685730-mRNA-1;Parent=Msa0685730;Name=Msa0685730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|2|0|128 |
| chr4_4 | exon | 49990918 | 49991109 | 49990918 | ID=Msa0685730-mRNA-1:exon:12732;Parent=Msa0685730-mRNA-1 |
| chr4_4 | exon | 49986017 | 49986211 | 49986017 | ID=Msa0685730-mRNA-1:exon:12731;Parent=Msa0685730-mRNA-1 |
| chr4_4 | CDS | 49990918 | 49991109 | 49990918 | ID=Msa0685730-mRNA-1:cds;Parent=Msa0685730-mRNA-1 |
| chr4_4 | CDS | 49986017 | 49986211 | 49986017 | ID=Msa0685730-mRNA-1:cds;Parent=Msa0685730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
