AlfalfaGEDB | Msa0219920

M. sativa cultivar zhongmu-4 / Msa0219920

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219920	XP_003597068.1	90.129	233	20	2	1	230	1	233	5.17e-118	346

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219920	G7IRL0	90.129	233	20	2	1	230	1	233	2.47e-118	346

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0219920	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0219920	Msa0261230	0.838595	2.620209e-57	-8.615850e-47
Msa0219920	Msa0299220	0.910477	1.794206e-82	-8.615850e-47
Msa0219920	Msa0792480	0.878909	1.917370e-69	-8.615850e-47
Msa0219920	Msa1186960	0.871921	4.725907e-67	-8.615850e-47
Msa0219920	Msa1241140	0.894119	3.327036e-75	-8.615850e-47
Msa0219920	Msa1321760	0.863263	2.820865e-64	-8.615850e-47

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219920	MtrunA17_Chr2g0323271	90.129	233	20	2	1	230	1	233	4.75e-122	346
Msa0219920	MtrunA17_Chr2g0280901	47.917	144	48	2	1	144	1	117	1.85e-31	112
Msa0219920	MtrunA17_Chr2g0322971	52.542	59	28	0	3	61	29	87	1.60e-13	65.1
Msa0219920	MtrunA17_Chr4g0024021	50.847	59	29	0	5	63	36	94	1.01e-12	63.2
Msa0219920	MtrunA17_Chr4g0002211	50.000	66	33	0	3	68	6	71	2.37e-12	64.7

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0219920	AT4G27310.1	42.197	173	56	3	1	138	1	164	7.30e-36	126
Msa0219920	AT5G54470.1	47.059	187	78	4	2	188	3	168	5.34e-34	121
Msa0219920	AT3G21890.1	56.000	50	22	0	5	54	31	80	8.33e-11	58.2

Showing 1 to 3 of 3 entries

Previous1Next

Find 73 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTCCGGCGCTAGGCT+CGG	0.551924	2_1:+67895112	Msa0219920:CDS
AACAGCGGCGCAACCACCAC+CGG	0.553693	2_1:+67895339	Msa0219920:CDS
AACCGACTCTTCGCTACCGG+AGG	0.640395	2_1:-67895371	None:intergenic
AACTTTCTGTGAGTCCGACC+AGG	0.531925	2_1:+67894982	Msa0219920:CDS
ACCGGCGTTGGAGTTAGCGT+TGG	0.527253	2_1:-67895185	None:intergenic
ACGAAACCGCGTTGAGAGAA+AGG	0.398885	2_1:+67894901	Msa0219920:five_prime_UTR
ACTTAGAAATAACCTCATCG+TGG	0.742114	2_1:-67895417	None:intergenic
AGAATGGGTAAGAAGAGGAA+AGG	0.576671	2_1:-67894771	None:intergenic
AGTCCCAGCATAAGCTAGCC+TGG	0.526991	2_1:-67895000	None:intergenic
ATAATATCTCTAATATAGTA+CGG	0.521383	2_1:-67895746	None:intergenic

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTACGGATTCAAAAAAT+TGG	+	chr2_1:67895595-67895614	Msa0219920:intron	30.0%
AGGTTACGGATTCAAAAAAT+TGG	+	chr2_1:67895595-67895614	Msa0219920:intron	30.0%
GTTTGGTATGGATGAAGAAT+GGG	-	chr2_1:67894789-67894808	None:intergenic	35.0%
TTCACTTTCTTCTTGTTGCT+CGG	-	chr2_1:67895218-67895237	None:intergenic	35.0%
TGAAGAAGATGGTGATAATC+AGG	+	chr2_1:67895300-67895319	Msa0219920:CDS	35.0%
ACTTAGAAATAACCTCATCG+TGG	-	chr2_1:67895420-67895439	None:intergenic	35.0%
TTGGAAAAATCAACGAAGAG+AGG	+	chr2_1:67895614-67895633	Msa0219920:CDS	35.0%
GTTTGGTATGGATGAAGAAT+GGG	-	chr2_1:67894789-67894808	None:intergenic	35.0%
TTCACTTTCTTCTTGTTGCT+CGG	-	chr2_1:67895218-67895237	None:intergenic	35.0%
TGAAGAAGATGGTGATAATC+AGG	+	chr2_1:67895300-67895319	Msa0219920:CDS	35.0%

Showing 1 to 10 of 180 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	67894773	67896089	67894773	ID=Msa0219920;Name=Msa0219920
chr2_1	mRNA	67894773	67896089	67894773	ID=Msa0219920-mRNA-1;Parent=Msa0219920;Name=Msa0219920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171\|1\|1\|1\|1\|1\|2\|346\|230
chr2_1	exon	67894773	67895489	67894773	ID=Msa0219920-mRNA-1:exon:19221;Parent=Msa0219920-mRNA-1
chr2_1	exon	67895597	67896089	67895597	ID=Msa0219920-mRNA-1:exon:19222;Parent=Msa0219920-mRNA-1
chr2_1	five_prime_UTR	67894773	67894943	67894773	ID=Msa0219920-mRNA-1:five_prime_utr;Parent=Msa0219920-mRNA-1
chr2_1	CDS	67894944	67895489	67894944	ID=Msa0219920-mRNA-1:cds;Parent=Msa0219920-mRNA-1
chr2_1	CDS	67895597	67895743	67895597	ID=Msa0219920-mRNA-1:cds;Parent=Msa0219920-mRNA-1
chr2_1	three_prime_UTR	67895744	67896089	67895744	ID=Msa0219920-mRNA-1:three_prime_utr;Parent=Msa0219920-mRNA-1

Gene Sequence

>Msa0219920

ATGAAAAAGAACTGCGAACTCTGCAAGCTTCCAGCTAGAACTTTCTGTGAGTCCGACCAGGCTAGCTTATGCTGGGACTGCGATTCTAAGGTTCACGCTGCTAACTTTTTGGTTGAGAGACACATGAGAACTCTCCTCTGTCACGCATGTCAATCTCCCACGCCGTGGAAAGCCTCCGGCGCTAGGCTCGGTAACGCGCTTTCGTTGTGTGATAGATGCGCCGGCGGAAGAAAACTCCACGCCAACGCTAACTCCAACGCCGGTGCCAGCGCCGAGCAACAAGAAGAAAGTGAAGGTGACAATGACAATGAAGAAGACACCGATTACGATTCCGATGAGGAAGATGAGGACGAGGATGAAGAAGATGGTGATAATCAGGTTGTTCCGTGGTCATCAACAGCGGCGCAACCACCACCGGCTTCTAGTTCCTCCGGTAGCGAAGAGTCGGTTACGGTTAGCAAGTGCAACGATAACCACGATGAGGTTATTTCTAAGTTAGTTACAACGATTTCTTTGAAACGACGTCGTTTAGATCATGATTTTCAGGTTACGGATTCAAAAAATTGGAAAAATCAACGAAGAGAGGTGGATGAGGTTGATTTGATAGGGTGCGACGAGGAACCGTCGTCAAAGGCGGCGATTCGGCGGTATAGCGACGTAAATGGAACGGAGCATTCTCAGCCACACGATTGA

Protein sequence

>Msa0219920

MKKNCELCKLPARTFCESDQASLCWDCDSKVHAANFLVERHMRTLLCHACQSPTPWKASGARLGNALSLCDRCAGGRKLHANANSNAGASAEQQEESEGDNDNEEDTDYDSDEEDEDEDEEDGDNQVVPWSSTAAQPPPASSSSGSEESVTVSKCNDNHDEVISKLVTTISLKRRRLDHDFQVTDSKNWKNQRREVDEVDLIGCDEEPSSKAAIRRYSDVNGTEHSQPHD*