Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321760 | G7LHM0 | 96.622 | 296 | 10 | 0 | 1 | 296 | 1 | 296 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026280 | Msa1321760 | 0.807615 | 4.636046e-50 | -8.615850e-47 |
| Msa0074140 | Msa1321760 | 0.805729 | 1.159893e-49 | -8.615850e-47 |
| Msa0074180 | Msa1321760 | 0.815079 | 1.111165e-51 | -8.615850e-47 |
| Msa0116590 | Msa1321760 | 0.806240 | 9.055735e-50 | -8.615850e-47 |
| Msa0792480 | Msa1321760 | 0.921760 | 2.363967e-88 | -8.615850e-47 |
| Msa0219920 | Msa1321760 | 0.863263 | 2.820865e-64 | -8.615850e-47 |
| Msa1241140 | Msa1321760 | 0.915152 | 8.262756e-85 | -8.615850e-47 |
| Msa0448980 | Msa1321760 | 0.823856 | 1.105822e-53 | -8.615850e-47 |
| Msa0299220 | Msa1321760 | 0.806914 | 6.526274e-50 | -8.615850e-47 |
| Msa1186960 | Msa1321760 | 0.921040 | 5.949719e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321760 | MtrunA17_Chr8g0353801 | 96.622 | 296 | 10 | 0 | 1 | 296 | 1 | 296 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAGAAAACTGGTCAAAA+TGG | 0.212731 | 8_4:+27915050 | Msa1321760:CDS |
| GTTTCCACCCAGCTCAATTT+TGG | 0.250647 | 8_4:+27918144 | Msa1321760:three_prime_UTR |
| ACCGGGCGATCAAGATTTAA+TGG | 0.329908 | 8_4:+27915015 | Msa1321760:CDS |
| TTAGGTGAATTGTAACCTTC+AGG | 0.333912 | 8_4:-27915085 | None:intergenic |
| GCTCAGAATGATCCAAGATT+TGG | 0.336181 | 8_4:-27917224 | None:intergenic |
| TTTGCCATGGATTGGTACTA+TGG | 0.347002 | 8_4:+27914968 | Msa1321760:exon |
| ATGCCAGACACTCCAAATCT+TGG | 0.356990 | 8_4:+27917212 | Msa1321760:intron |
| GTTGAAATTGAATTCTAATT+CGG | 0.357412 | 8_4:-27915137 | None:intergenic |
| TTTGGTTGTAATGTAAGTTA+TGG | 0.363543 | 8_4:+27918162 | Msa1321760:three_prime_UTR |
| TGCATGAACAATCTCTTAGT+TGG | 0.367739 | 8_4:-27917988 | None:intergenic |
| ACAAAGTACTGAATAATTAC+AGG | 0.374448 | 8_4:-27918075 | None:intergenic |
| GCTAGATTGATCTTTATCAT+AGG | 0.391039 | 8_4:-27915200 | None:intergenic |
| ACCAGAAAACTGGTCAAAAT+GGG | 0.398356 | 8_4:+27915051 | Msa1321760:CDS |
| TACCAGGTGTATTGCTGCAT+TGG | 0.399806 | 8_4:-27916334 | None:intergenic |
| GGCATCCATCACCAGAAAAC+TGG | 0.409517 | 8_4:+27915041 | Msa1321760:CDS |
| TACATAATACATATAACTTC+TGG | 0.435133 | 8_4:-27918099 | None:intergenic |
| TACATTCAAACAAAATATCA+AGG | 0.459131 | 8_4:-27918260 | None:intergenic |
| CATTACAACCAAAATTGAGC+TGG | 0.460144 | 8_4:-27918152 | None:intergenic |
| ACAGACTATTTGCCATGGAT+TGG | 0.463656 | 8_4:+27914960 | Msa1321760:intron |
| AAAAGAACAAAACTTGTTGA+AGG | 0.475973 | 8_4:-27914150 | None:intergenic |
| CTGTTGGTCTCTGATTCCAT+TGG | 0.476213 | 8_4:-27917906 | None:intergenic |
| GCCATTAAATCTTGATCGCC+CGG | 0.481344 | 8_4:-27915016 | None:intergenic |
| TATTATGTAAGTCTTGTTCA+AGG | 0.494533 | 8_4:+27918113 | Msa1321760:three_prime_UTR |
| GTTTCCATCAGGTGGACTGC+AGG | 0.502214 | 8_4:+27916457 | Msa1321760:intron |
| AACGAACGATTTCGTTGTAC+CGG | 0.507721 | 8_4:+27914997 | Msa1321760:CDS |
| TTCGGTTGTATCTGAATCCA+TGG | 0.525837 | 8_4:-27915119 | None:intergenic |
| TCTTGAGGCAATAATTTCAC+AGG | 0.527177 | 8_4:+27917308 | Msa1321760:CDS |
| TAAGAAGAGTTAAGAAGCAA+TGG | 0.538057 | 8_4:-27913989 | None:intergenic |
| ACTGAATAATTACAGGGACT+TGG | 0.539981 | 8_4:-27918068 | None:intergenic |
| GCATGCTAACATCACCATCC+AGG | 0.540288 | 8_4:-27917508 | None:intergenic |
| TCTAGCAGTTCAAGTGTATG+TGG | 0.542953 | 8_4:+27915217 | Msa1321760:CDS |
| GAATTAGAATTCAATTTCAA+CGG | 0.553537 | 8_4:+27915139 | Msa1321760:CDS |
| CATTTACAGACTATTTGCCA+TGG | 0.556600 | 8_4:+27914955 | Msa1321760:intron |
| ACAGAGAGAGGGAGAGAGAG+AGG | 0.557590 | 8_4:-27914060 | None:intergenic |
| ATTACAACCAAAATTGAGCT+GGG | 0.568507 | 8_4:-27918151 | None:intergenic |
| AACTGCTCTGTCGACACTGT+TGG | 0.570993 | 8_4:-27917922 | None:intergenic |
| ATGGATTGGTACTATGGATG+TGG | 0.574082 | 8_4:+27914974 | Msa1321760:CDS |
| GATCATTCTGAGCAATTCAG+TGG | 0.574655 | 8_4:+27917234 | Msa1321760:CDS |
| ACGAACGATTTCGTTGTACC+GGG | 0.575268 | 8_4:+27914998 | Msa1321760:CDS |
| CATGCAAGAGGCAATGCCAT+GGG | 0.575553 | 8_4:+27917526 | Msa1321760:CDS |
| AACTTGTTGAAGGATGAAAC+TGG | 0.582612 | 8_4:-27914140 | None:intergenic |
| AACGGTGAAAGTTTCCGCGA+TGG | 0.584616 | 8_4:+27915157 | Msa1321760:CDS |
| GCATGCAAGAGGCAATGCCA+TGG | 0.584688 | 8_4:+27917525 | Msa1321760:CDS |
| GCTTCATTGTGAACGGCCCA+TGG | 0.589973 | 8_4:-27917542 | None:intergenic |
| TCAGAATGTAGTAGAGGACC+TGG | 0.590986 | 8_4:+27917490 | Msa1321760:CDS |
| AGAATTGCATGTAAGATACT+CGG | 0.591979 | 8_4:-27916495 | None:intergenic |
| TGATGACTGCTTGAACATAG+AGG | 0.595824 | 8_4:+27916523 | Msa1321760:CDS |
| CAAAGTACTGAATAATTACA+GGG | 0.602293 | 8_4:-27918074 | None:intergenic |
| TGGGGAATAAATACACCTGA+AGG | 0.602852 | 8_4:+27915070 | Msa1321760:CDS |
| GCGATCAAGATTTAATGGCT+AGG | 0.605112 | 8_4:+27915020 | Msa1321760:CDS |
| GTCTGACGACAAGAAACCAA+TGG | 0.611234 | 8_4:+27917890 | Msa1321760:CDS |
| ATCTACACTGCAGAATCTTG+AGG | 0.615256 | 8_4:+27917293 | Msa1321760:CDS |
| GGATCAACATTCGCAATATG+CGG | 0.616497 | 8_4:-27917967 | None:intergenic |
| AAAACATCAGAATGTAGTAG+AGG | 0.618804 | 8_4:+27917484 | Msa1321760:CDS |
| CCTCAGGGCTTCATTGTGAA+CGG | 0.621168 | 8_4:-27917549 | None:intergenic |
| AACCAATGCAGCAATACACC+TGG | 0.625548 | 8_4:+27916332 | Msa1321760:CDS |
| ACATCCATAGTACCAATCCA+TGG | 0.634261 | 8_4:-27914972 | None:intergenic |
| CCAGAAAACTGGTCAAAATG+GGG | 0.639085 | 8_4:+27915052 | Msa1321760:CDS |
| TGTGTACAAGAAAATGTCAT+CGG | 0.643710 | 8_4:-27915329 | None:intergenic |
| GTTGCTAATCTCATGTTCAA+CGG | 0.648717 | 8_4:+27917942 | Msa1321760:CDS |
| AATGTAGTAGAGGACCTGGA+TGG | 0.664719 | 8_4:+27917494 | Msa1321760:CDS |
| AGCAGTTCAAGTGTATGTGG+AGG | 0.666769 | 8_4:+27915220 | Msa1321760:CDS |
| TGGTGATGTTAGCATGCAAG+AGG | 0.691812 | 8_4:+27917514 | Msa1321760:CDS |
| GTACAAGAAAATGTCATCGG+TGG | 0.696106 | 8_4:-27915326 | None:intergenic |
| ACAACCAAAATTGAGCTGGG+TGG | 0.710912 | 8_4:-27918148 | None:intergenic |
| ATTCAAACTTGACTCCATCG+CGG | 0.769037 | 8_4:-27915171 | None:intergenic |
| CAAGGCGGTAAAGTGCATCG+CGG | 0.772895 | 8_4:-27917451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACTCTT+TGG | - | chr8_4:27914492-27914511 | None:intergenic | 10.0% |
| !!! | AAAACAATATTTTTTTTACA+GGG | + | chr8_4:27916014-27916033 | Msa1321760:intron | 10.0% |
| !!! | GGTTTTGATTATTTTTATAA+GGG | + | chr8_4:27914385-27914404 | Msa1321760:intron | 15.0% |
| !!! | AATTAAGTTTTCATTAATTG+AGG | + | chr8_4:27914760-27914779 | Msa1321760:intron | 15.0% |
| !!! | ATATACTACTTTTTTACTTT+TGG | + | chr8_4:27915700-27915719 | Msa1321760:intron | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | + | chr8_4:27915784-27915803 | Msa1321760:intron | 15.0% |
| !!! | TTCAAAATGAACAAATTTTA+CGG | - | chr8_4:27915833-27915852 | None:intergenic | 15.0% |
| !!! | CAAAACAATATTTTTTTTAC+AGG | + | chr8_4:27916013-27916032 | Msa1321760:intron | 15.0% |
| !! | TTATGATTAAGAATTGAATT+TGG | + | chr8_4:27916608-27916627 | Msa1321760:intron | 15.0% |
| !!! | TATAGCAAATGTTTTTGTTT+TGG | - | chr8_4:27914036-27914055 | None:intergenic | 20.0% |
| !!! | GGGTTTTGATTATTTTTATA+AGG | + | chr8_4:27914384-27914403 | Msa1321760:intron | 20.0% |
| !!! | TATTTTTATAAGGGTTGAAA+AGG | + | chr8_4:27914394-27914413 | Msa1321760:intron | 20.0% |
| !!! | ATTTTTATAAGGGTTGAAAA+GGG | + | chr8_4:27914395-27914414 | Msa1321760:intron | 20.0% |
| !! | AAAAAAAAACTCTTTGGATT+TGG | - | chr8_4:27914486-27914505 | None:intergenic | 20.0% |
| !! | AATGAAAACTTAATTGAACA+TGG | - | chr8_4:27914755-27914774 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAATTCTAATT+CGG | - | chr8_4:27915140-27915159 | None:intergenic | 20.0% |
| !! | GAATTAGAATTCAATTTCAA+CGG | + | chr8_4:27915139-27915158 | Msa1321760:CDS | 20.0% |
| !! | AAGATAAATATGGTGAAATT+TGG | - | chr8_4:27915507-27915526 | None:intergenic | 20.0% |
| !! | ACCATATTTATCTTTATCAT+CGG | + | chr8_4:27915513-27915532 | Msa1321760:intron | 20.0% |
| !! | AAAAAAGTAGTATATTTGCA+AGG | - | chr8_4:27915695-27915714 | None:intergenic | 20.0% |
| !!! | CGAACTATATTTTTTTTACA+GGG | - | chr8_4:27915755-27915774 | None:intergenic | 20.0% |
| !!! | TCGAACTATATTTTTTTTAC+AGG | - | chr8_4:27915756-27915775 | None:intergenic | 20.0% |
| !! | AATTAAAAGAAAAAGGAGAA+AGG | - | chr8_4:27917007-27917026 | None:intergenic | 20.0% |
| !!! | TTTCTCCTTTTTCTTTTAAT+TGG | + | chr8_4:27917006-27917025 | Msa1321760:intron | 20.0% |
| !! | AAAGTCCAATTAAAAGAAAA+AGG | - | chr8_4:27917014-27917033 | None:intergenic | 20.0% |
| !! | TACATAATACATATAACTTC+TGG | - | chr8_4:27918102-27918121 | None:intergenic | 20.0% |
| !! | TACATTCAAACAAAATATCA+AGG | - | chr8_4:27918263-27918282 | None:intergenic | 20.0% |
| !!! | AGTTTATAGACCATTTTTTT+TGG | + | chr8_4:27918292-27918311 | Msa1321760:three_prime_UTR | 20.0% |
| !!! | AAAAGAACAAAACTTGTTGA+AGG | - | chr8_4:27914153-27914172 | None:intergenic | 25.0% |
| !!! | TCCTTATTTTTTGCTGTTTT+TGG | + | chr8_4:27914219-27914238 | Msa1321760:intron | 25.0% |
| ! | TCCAAAAACAGCAAAAAATA+AGG | - | chr8_4:27914223-27914242 | None:intergenic | 25.0% |
| !!! | TGTGGTTTTTTTGTTTTTGA+TGG | + | chr8_4:27914328-27914347 | Msa1321760:intron | 25.0% |
| !!! | GTTTTTTTGTTTTTGATGGT+TGG | + | chr8_4:27914332-27914351 | Msa1321760:intron | 25.0% |
| !!! | ATTTTAAAGCTTAACTGAAG+TGG | + | chr8_4:27914363-27914382 | Msa1321760:intron | 25.0% |
| !!! | TTTTAAAGCTTAACTGAAGT+GGG | + | chr8_4:27914364-27914383 | Msa1321760:intron | 25.0% |
| !!! | GTTTTCTATGATTGGTTTAA+TGG | + | chr8_4:27914459-27914478 | Msa1321760:intron | 25.0% |
| ! | TCTACAAAAAGTTGAAGATT+TGG | - | chr8_4:27914518-27914537 | None:intergenic | 25.0% |
| !!! | GTTGATAACACAGTTTTAAA+GGG | + | chr8_4:27914716-27914735 | Msa1321760:intron | 25.0% |
| ! | ATAGTTTATACAAGGAACAT+AGG | + | chr8_4:27914819-27914838 | Msa1321760:intron | 25.0% |
| ! | CATGATGATTATTATCATAC+AGG | - | chr8_4:27915392-27915411 | None:intergenic | 25.0% |
| ! | TCCGATGATAAAGATAAATA+TGG | - | chr8_4:27915517-27915536 | None:intergenic | 25.0% |
| !! | TTGAGGTTTACATATGTTTT+TGG | + | chr8_4:27915610-27915629 | Msa1321760:intron | 25.0% |
| ! | CAAAAAGTGGTATATTTACA+GGG | - | chr8_4:27915637-27915656 | None:intergenic | 25.0% |
| !! | TATACTACAGCTTTTACTTT+AGG | - | chr8_4:27915981-27916000 | None:intergenic | 25.0% |
| ! | TTGAATTAATTTCATGCCTA+TGG | - | chr8_4:27916188-27916207 | None:intergenic | 25.0% |
| !!! | GTTTTCAGGATAAAAGTAAA+AGG | - | chr8_4:27916315-27916334 | None:intergenic | 25.0% |
| ! | AAGAATTGAATTTGGTATCT+CGG | + | chr8_4:27916616-27916635 | Msa1321760:intron | 25.0% |
| !!! | CATTTGTTGTATAGTAGTAT+AGG | + | chr8_4:27916799-27916818 | Msa1321760:intron | 25.0% |
| !! | CAATTTTCTCAAATTACTAC+TGG | + | chr8_4:27917095-27917114 | Msa1321760:intron | 25.0% |
| ! | AATCTAAATCATATACCTCA+GGG | - | chr8_4:27917567-27917586 | None:intergenic | 25.0% |
| ! | AAATCTAAATCATATACCTC+AGG | - | chr8_4:27917568-27917587 | None:intergenic | 25.0% |
| !! | AGAAAATAGAAGTGTATGTT+TGG | - | chr8_4:27917714-27917733 | None:intergenic | 25.0% |
| !! | TCAAACACATACTTTAAGTT+TGG | - | chr8_4:27917741-27917760 | None:intergenic | 25.0% |
| ! | TTTACAAAATCAAGATCATC+AGG | - | chr8_4:27917787-27917806 | None:intergenic | 25.0% |
| !!! | CAAAGTACTGAATAATTACA+GGG | - | chr8_4:27918077-27918096 | None:intergenic | 25.0% |
| !!! | ACAAAGTACTGAATAATTAC+AGG | - | chr8_4:27918078-27918097 | None:intergenic | 25.0% |
| !!! | TATTATGTAAGTCTTGTTCA+AGG | + | chr8_4:27918113-27918132 | Msa1321760:three_prime_UTR | 25.0% |
| ! | TTTGGTTGTAATGTAAGTTA+TGG | + | chr8_4:27918162-27918181 | Msa1321760:three_prime_UTR | 25.0% |
| !! | ATGCTAGAGTAAGAAATTTT+AGG | + | chr8_4:27918197-27918216 | Msa1321760:three_prime_UTR | 25.0% |
| !!! | AGTTAGGTCATAATTTTTTG+TGG | + | chr8_4:27918323-27918342 | Msa1321760:three_prime_UTR | 25.0% |
| TAAGAAGAGTTAAGAAGCAA+TGG | - | chr8_4:27913992-27914011 | None:intergenic | 30.0% | |
| !! | TGTTGTATGAGTTTTGTGAT+AGG | - | chr8_4:27914094-27914113 | None:intergenic | 30.0% |
| !!! | CTGTTTTTGGAGTGTTTTTA+TGG | + | chr8_4:27914232-27914251 | Msa1321760:intron | 30.0% |
| !! | GTTTTGATGTGAAATATGCA+TGG | + | chr8_4:27914271-27914290 | Msa1321760:intron | 30.0% |
| ! | TGCATGAAGTTTTCTATGAT+TGG | + | chr8_4:27914451-27914470 | Msa1321760:intron | 30.0% |
| !! | TTGTAGATGAAGTGCTTTTA+TGG | + | chr8_4:27914531-27914550 | Msa1321760:intron | 30.0% |
| TGCTAAGAACTTGAATCTAT+TGG | + | chr8_4:27914573-27914592 | Msa1321760:intron | 30.0% | |
| !!! | CGTTGATAACACAGTTTTAA+AGG | + | chr8_4:27914715-27914734 | Msa1321760:intron | 30.0% |
| TCATTAATTGAGGATCTAGA+AGG | + | chr8_4:27914770-27914789 | Msa1321760:intron | 30.0% | |
| GATCCAACATAGTTTATACA+AGG | + | chr8_4:27914811-27914830 | Msa1321760:intron | 30.0% | |
| GTTCCTTGTATAAACTATGT+TGG | - | chr8_4:27914817-27914836 | None:intergenic | 30.0% | |
| ACCTAAAAATTTCATGACCA+TGG | + | chr8_4:27915102-27915121 | Msa1321760:CDS | 30.0% | |
| ! | TCCATGGTCATGAAATTTTT+AGG | - | chr8_4:27915106-27915125 | None:intergenic | 30.0% |
| GCTAGATTGATCTTTATCAT+AGG | - | chr8_4:27915203-27915222 | None:intergenic | 30.0% | |
| TGTGTACAAGAAAATGTCAT+CGG | - | chr8_4:27915332-27915351 | None:intergenic | 30.0% | |
| CCAAAAAGTGGTATATTTAC+AGG | - | chr8_4:27915638-27915657 | None:intergenic | 30.0% | |
| !! | CCTGTAAATATACCACTTTT+TGG | + | chr8_4:27915635-27915654 | Msa1321760:intron | 30.0% |
| ATAGGACTAATACCAAAAAG+TGG | - | chr8_4:27915650-27915669 | None:intergenic | 30.0% | |
| AGTCCTTATGAAACAACTAT+TGG | + | chr8_4:27915888-27915907 | Msa1321760:intron | 30.0% | |
| GTCCTTATGAAACAACTATT+GGG | + | chr8_4:27915889-27915908 | Msa1321760:intron | 30.0% | |
| TCCTTATGAAACAACTATTG+GGG | + | chr8_4:27915890-27915909 | Msa1321760:intron | 30.0% | |
| TATTGCACAGACTAATTCAA+AGG | + | chr8_4:27915936-27915955 | Msa1321760:intron | 30.0% | |
| AAAGCTGTAGTATATTTGCA+AGG | + | chr8_4:27915987-27916006 | Msa1321760:intron | 30.0% | |
| GTGTAAAAAGAGTTATTACC+AGG | - | chr8_4:27916353-27916372 | None:intergenic | 30.0% | |
| AGTTTCCTGAACAATTTCTA+TGG | + | chr8_4:27916396-27916415 | Msa1321760:intron | 30.0% | |
| CAATACCATAGAAATTGTTC+AGG | - | chr8_4:27916404-27916423 | None:intergenic | 30.0% | |
| AGAATTGCATGTAAGATACT+CGG | - | chr8_4:27916498-27916517 | None:intergenic | 30.0% | |
| AGAATTGAATTTGGTATCTC+GGG | + | chr8_4:27916617-27916636 | Msa1321760:intron | 30.0% | |
| ! | TTTAAAAAGCTTGCGTTTTG+AGG | - | chr8_4:27916962-27916981 | None:intergenic | 30.0% |
| ! | TCAAAACGCAAGCTTTTTAA+AGG | + | chr8_4:27916961-27916980 | Msa1321760:intron | 30.0% |
| GCTTATAACTAAGAAATCCT+TGG | + | chr8_4:27917338-27917357 | Msa1321760:intron | 30.0% | |
| ! | ATTCTGATGTTTTGTATCTC+TGG | - | chr8_4:27917477-27917496 | None:intergenic | 30.0% |
| AAAACATCAGAATGTAGTAG+AGG | + | chr8_4:27917484-27917503 | Msa1321760:CDS | 30.0% | |
| ! | CAAATGCTACCTTTGTTTAT+AGG | + | chr8_4:27917868-27917887 | Msa1321760:intron | 30.0% |
| GAGATTGTTCATGCAAAAAT+TGG | + | chr8_4:27917996-27918015 | Msa1321760:three_prime_UTR | 30.0% | |
| ATTACAACCAAAATTGAGCT+GGG | - | chr8_4:27918154-27918173 | None:intergenic | 30.0% | |
| ACACTCATAGAAGAAAAACT+AGG | - | chr8_4:27918234-27918253 | None:intergenic | 30.0% | |
| CTCAAGTTTGCCAAAAAAAA+TGG | - | chr8_4:27918305-27918324 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGCAAACTTGAGTT+AGG | + | chr8_4:27918307-27918326 | Msa1321760:three_prime_UTR | 30.0% |
| AGGTGAAAAATACAGAGAGA+GGG | - | chr8_4:27914074-27914093 | None:intergenic | 35.0% | |
| TAGGTGAAAAATACAGAGAG+AGG | - | chr8_4:27914075-27914094 | None:intergenic | 35.0% | |
| !! | AACTTGTTGAAGGATGAAAC+TGG | - | chr8_4:27914143-27914162 | None:intergenic | 35.0% |
| TATAAGGGTTGAAAAGGGTT+AGG | + | chr8_4:27914400-27914419 | Msa1321760:intron | 35.0% | |
| CATTTACAGACTATTTGCCA+TGG | + | chr8_4:27914955-27914974 | Msa1321760:intron | 35.0% | |
| ACCAGAAAACTGGTCAAAAT+GGG | + | chr8_4:27915051-27915070 | Msa1321760:CDS | 35.0% | |
| TTAGGTGAATTGTAACCTTC+AGG | - | chr8_4:27915088-27915107 | None:intergenic | 35.0% | |
| !! | ACTTCTGGGATTAATATGCT+TGG | + | chr8_4:27915358-27915377 | Msa1321760:intron | 35.0% |
| ! | ATAGAGCATTCAATTTCCAC+TGG | - | chr8_4:27915470-27915489 | None:intergenic | 35.0% |
| TTCATGCTTATAGAGTTGTG+CGG | - | chr8_4:27915557-27915576 | None:intergenic | 35.0% | |
| AAGCATGAACCTGTTATAGT+AGG | + | chr8_4:27915568-27915587 | Msa1321760:intron | 35.0% | |
| AGCATGAACCTGTTATAGTA+GGG | + | chr8_4:27915569-27915588 | Msa1321760:intron | 35.0% | |
| AACCTGTTATAGTAGGGTAA+GGG | + | chr8_4:27915575-27915594 | Msa1321760:intron | 35.0% | |
| ! | AAGGGCTACTATTTTCTTTG+AGG | + | chr8_4:27915593-27915612 | Msa1321760:intron | 35.0% |
| !!! | ACTTTTGGTTCTTGCTGTTT+TGG | + | chr8_4:27915715-27915734 | Msa1321760:intron | 35.0% |
| !! | ACATTTGGTCTTTGCTGTTT+CGG | + | chr8_4:27915799-27915818 | Msa1321760:intron | 35.0% |
| CCTTATGAAACAACTATTGG+GGG | + | chr8_4:27915891-27915910 | Msa1321760:intron | 35.0% | |
| CTTATGAAACAACTATTGGG+GGG | + | chr8_4:27915892-27915911 | Msa1321760:intron | 35.0% | |
| !! | AGGGATTCTAAAGCAAAAAG+TGG | + | chr8_4:27916033-27916052 | Msa1321760:intron | 35.0% |
| GCAAAAAGTGGTAGATTTGT+TGG | + | chr8_4:27916045-27916064 | Msa1321760:intron | 35.0% | |
| !! | AAGTGGTAGATTTGTTGGTA+CGG | + | chr8_4:27916050-27916069 | Msa1321760:intron | 35.0% |
| TCACATGTTTCACATAATGC+AGG | + | chr8_4:27916243-27916262 | Msa1321760:intron | 35.0% | |
| CACATGTTTCACATAATGCA+GGG | + | chr8_4:27916244-27916263 | Msa1321760:intron | 35.0% | |
| !! | TTGTTTGAGTTTTCAGCACA+TGG | - | chr8_4:27916290-27916309 | None:intergenic | 35.0% |
| !! | TGCATTCTTTTGTTTCCATC+AGG | + | chr8_4:27916446-27916465 | Msa1321760:intron | 35.0% |
| !! | ATTCTTTTGTTTCCATCAGG+TGG | + | chr8_4:27916449-27916468 | Msa1321760:intron | 35.0% |
| GAATTGAATTTGGTATCTCG+GGG | + | chr8_4:27916618-27916637 | Msa1321760:intron | 35.0% | |
| ! | AGATTCATGTTTTACCACCA+CGG | - | chr8_4:27916683-27916702 | None:intergenic | 35.0% |
| TCCAAATACTCTTGTCTATG+TGG | + | chr8_4:27916767-27916786 | Msa1321760:intron | 35.0% | |
| !! | ACCACATAGACAAGAGTATT+TGG | - | chr8_4:27916771-27916790 | None:intergenic | 35.0% |
| TTGAGCTGTTTATCCAATCA+TGG | + | chr8_4:27916936-27916955 | Msa1321760:intron | 35.0% | |
| !! | ACGCAAGCTTTTTAAAGGAT+TGG | + | chr8_4:27916966-27916985 | Msa1321760:intron | 35.0% |
| TTGAATGTAACCACATGTGT+CGG | - | chr8_4:27917078-27917097 | None:intergenic | 35.0% | |
| TCTTGAGGCAATAATTTCAC+AGG | + | chr8_4:27917308-27917327 | Msa1321760:CDS | 35.0% | |
| GTACATAAAATCAGATGCCA+AGG | - | chr8_4:27917358-27917377 | None:intergenic | 35.0% | |
| TCAATTGACAGTGAGATTGA+CGG | + | chr8_4:27917611-27917630 | Msa1321760:intron | 35.0% | |
| GAAGTGTATGTTTGGTTGAA+CGG | - | chr8_4:27917706-27917725 | None:intergenic | 35.0% | |
| GTTGCTAATCTCATGTTCAA+CGG | + | chr8_4:27917942-27917961 | Msa1321760:CDS | 35.0% | |
| TGCATGAACAATCTCTTAGT+TGG | - | chr8_4:27917991-27918010 | None:intergenic | 35.0% | |
| TGTTCATGCAAAAATTGGTC+AGG | + | chr8_4:27918001-27918020 | Msa1321760:three_prime_UTR | 35.0% | |
| ACTGAATAATTACAGGGACT+TGG | - | chr8_4:27918071-27918090 | None:intergenic | 35.0% | |
| CATTACAACCAAAATTGAGC+TGG | - | chr8_4:27918155-27918174 | None:intergenic | 35.0% | |
| TTGAAAAGGGTTAGGAGTAG+TGG | + | chr8_4:27914408-27914427 | Msa1321760:intron | 40.0% | |
| ACGCAGATCGAAGAAAATAG+TGG | - | chr8_4:27914698-27914717 | None:intergenic | 40.0% | |
| ACAGACTATTTGCCATGGAT+TGG | + | chr8_4:27914960-27914979 | Msa1321760:intron | 40.0% | |
| !! | TTTGCCATGGATTGGTACTA+TGG | + | chr8_4:27914968-27914987 | Msa1321760:exon | 40.0% |
| ACATCCATAGTACCAATCCA+TGG | - | chr8_4:27914975-27914994 | None:intergenic | 40.0% | |
| !! | ATGGATTGGTACTATGGATG+TGG | + | chr8_4:27914974-27914993 | Msa1321760:CDS | 40.0% |
| AACGAACGATTTCGTTGTAC+CGG | + | chr8_4:27914997-27915016 | Msa1321760:CDS | 40.0% | |
| GCGATCAAGATTTAATGGCT+AGG | + | chr8_4:27915020-27915039 | Msa1321760:CDS | 40.0% | |
| !! | TTTGACCAGTTTTCTGGTGA+TGG | - | chr8_4:27915049-27915068 | None:intergenic | 40.0% |
| CACCAGAAAACTGGTCAAAA+TGG | + | chr8_4:27915050-27915069 | Msa1321760:CDS | 40.0% | |
| CCAGAAAACTGGTCAAAATG+GGG | + | chr8_4:27915052-27915071 | Msa1321760:CDS | 40.0% | |
| TGGGGAATAAATACACCTGA+AGG | + | chr8_4:27915070-27915089 | Msa1321760:CDS | 40.0% | |
| TTCGGTTGTATCTGAATCCA+TGG | - | chr8_4:27915122-27915141 | None:intergenic | 40.0% | |
| ATTCAAACTTGACTCCATCG+CGG | - | chr8_4:27915174-27915193 | None:intergenic | 40.0% | |
| TCTAGCAGTTCAAGTGTATG+TGG | + | chr8_4:27915217-27915236 | Msa1321760:CDS | 40.0% | |
| GTACAAGAAAATGTCATCGG+TGG | - | chr8_4:27915329-27915348 | None:intergenic | 40.0% | |
| TTGTACACAAGCGTAACTTC+TGG | + | chr8_4:27915343-27915362 | Msa1321760:intron | 40.0% | |
| TGTACACAAGCGTAACTTCT+GGG | + | chr8_4:27915344-27915363 | Msa1321760:intron | 40.0% | |
| ATGCAAAGCATACTCATGCT+AGG | - | chr8_4:27915436-27915455 | None:intergenic | 40.0% | |
| !! | TGCATTTTAGCAAAGTCCAG+TGG | + | chr8_4:27915451-27915470 | Msa1321760:intron | 40.0% |
| TCATCGGAGCCAAAACAAAA+TGG | + | chr8_4:27915529-27915548 | Msa1321760:intron | 40.0% | |
| !! | TGTGCGGAACCATTTTGTTT+TGG | - | chr8_4:27915541-27915560 | None:intergenic | 40.0% |
| GAACCTGTTATAGTAGGGTA+AGG | + | chr8_4:27915574-27915593 | Msa1321760:intron | 40.0% | |
| ! | CCCCCAATAGTTGTTTCATA+AGG | - | chr8_4:27915894-27915913 | None:intergenic | 40.0% |
| AAAGGTGACCAAAGACAACA+AGG | + | chr8_4:27915954-27915973 | Msa1321760:intron | 40.0% | |
| ! | CTTTAGGTCCTTGTTGTCTT+TGG | - | chr8_4:27915965-27915984 | None:intergenic | 40.0% |
| CAGAGACATTCAATTCTCAC+TGG | + | chr8_4:27916159-27916178 | Msa1321760:intron | 40.0% | |
| !!! | GTATTGCTGCATTGGTTTTC+AGG | - | chr8_4:27916329-27916348 | None:intergenic | 40.0% |
| TGATGACTGCTTGAACATAG+AGG | + | chr8_4:27916523-27916542 | Msa1321760:CDS | 40.0% | |
| CCATTCATCTACTAGACAGA+AGG | - | chr8_4:27916557-27916576 | None:intergenic | 40.0% | |
| CCTTCTGTCTAGTAGATGAA+TGG | + | chr8_4:27916554-27916573 | Msa1321760:intron | 40.0% | |
| ! | GATTCATGTTTTACCACCAC+GGG | - | chr8_4:27916682-27916701 | None:intergenic | 40.0% |
| GTCAAATATGAACCACCATC+TGG | + | chr8_4:27916721-27916740 | Msa1321760:intron | 40.0% | |
| !! | AAAAAGCTCTGAAGACCAGA+TGG | - | chr8_4:27916739-27916758 | None:intergenic | 40.0% |
| CATCACAAGTTCACAACACA+AGG | + | chr8_4:27916862-27916881 | Msa1321760:intron | 40.0% | |
| GCTCAGAATGATCCAAGATT+TGG | - | chr8_4:27917227-27917246 | None:intergenic | 40.0% | |
| GATCATTCTGAGCAATTCAG+TGG | + | chr8_4:27917234-27917253 | Msa1321760:CDS | 40.0% | |
| ATCTACACTGCAGAATCTTG+AGG | + | chr8_4:27917293-27917312 | Msa1321760:CDS | 40.0% | |
| ! | GATGTTTTGTATCTCTGGCA+AGG | - | chr8_4:27917472-27917491 | None:intergenic | 40.0% |
| GTCGTCAGACCTATAAACAA+AGG | - | chr8_4:27917880-27917899 | None:intergenic | 40.0% | |
| GGATCAACATTCGCAATATG+CGG | - | chr8_4:27917970-27917989 | None:intergenic | 40.0% | |
| ACGAACGATTTCGTTGTACC+GGG | + | chr8_4:27914998-27915017 | Msa1321760:CDS | 45.0% | |
| ACCGGGCGATCAAGATTTAA+TGG | + | chr8_4:27915015-27915034 | Msa1321760:CDS | 45.0% | |
| GCCATTAAATCTTGATCGCC+CGG | - | chr8_4:27915019-27915038 | None:intergenic | 45.0% | |
| !! | CCCCATTTTGACCAGTTTTC+TGG | - | chr8_4:27915055-27915074 | None:intergenic | 45.0% |
| AGCAGTTCAAGTGTATGTGG+AGG | + | chr8_4:27915220-27915239 | Msa1321760:CDS | 45.0% | |
| AGCCCTTACCCTACTATAAC+AGG | - | chr8_4:27915580-27915599 | None:intergenic | 45.0% | |
| ! | CAATTCTCACTGGCTACCAT+AGG | + | chr8_4:27916169-27916188 | Msa1321760:intron | 45.0% |
| AACCAATGCAGCAATACACC+TGG | + | chr8_4:27916332-27916351 | Msa1321760:CDS | 45.0% | |
| TACCAGGTGTATTGCTGCAT+TGG | - | chr8_4:27916337-27916356 | None:intergenic | 45.0% | |
| !!! | TTGCGTTTTGAGGCCATGAT+TGG | - | chr8_4:27916952-27916971 | None:intergenic | 45.0% |
| GTCAATGTCAGTGTCATCTC+TGG | + | chr8_4:27917127-27917146 | Msa1321760:intron | 45.0% | |
| TCCTGTCTGTCAATGCTTCA+TGG | + | chr8_4:27917153-27917172 | Msa1321760:intron | 45.0% | |
| !! | ACCATGAAGCATTGACAGAC+AGG | - | chr8_4:27917157-27917176 | None:intergenic | 45.0% |
| ATGCCAGACACTCCAAATCT+TGG | + | chr8_4:27917212-27917231 | Msa1321760:intron | 45.0% | |
| ! | GATCCAAGATTTGGAGTGTC+TGG | - | chr8_4:27917218-27917237 | None:intergenic | 45.0% |
| ! | GTTTTGTATCTCTGGCAAGG+CGG | - | chr8_4:27917469-27917488 | None:intergenic | 45.0% |
| TCAGAATGTAGTAGAGGACC+TGG | + | chr8_4:27917490-27917509 | Msa1321760:CDS | 45.0% | |
| AATGTAGTAGAGGACCTGGA+TGG | + | chr8_4:27917494-27917513 | Msa1321760:CDS | 45.0% | |
| ! | TGGTGATGTTAGCATGCAAG+AGG | + | chr8_4:27917514-27917533 | Msa1321760:CDS | 45.0% |
| CAGTGAGATTGACGGAATCA+CGG | + | chr8_4:27917619-27917638 | Msa1321760:intron | 45.0% | |
| CGGTGAGTTTGGCAAAATCA+CGG | - | chr8_4:27917686-27917705 | None:intergenic | 45.0% | |
| GTTTGGTTGAACGGTGAGTT+TGG | - | chr8_4:27917697-27917716 | None:intergenic | 45.0% | |
| GTCTGACGACAAGAAACCAA+TGG | + | chr8_4:27917890-27917909 | Msa1321760:CDS | 45.0% | |
| ! | CTGTTGGTCTCTGATTCCAT+TGG | - | chr8_4:27917909-27917928 | None:intergenic | 45.0% |
| ! | GTTTCCACCCAGCTCAATTT+TGG | + | chr8_4:27918144-27918163 | Msa1321760:three_prime_UTR | 45.0% |
| ACAACCAAAATTGAGCTGGG+TGG | - | chr8_4:27918151-27918170 | None:intergenic | 45.0% | |
| !!! | TAAAATTTTAATTTTTTTTG+TGG | + | chr8_4:27914310-27914329 | Msa1321760:intron | 5.0% |
| !!! | AAATGAAATTATTTTTTAAT+AGG | - | chr8_4:27915668-27915687 | None:intergenic | 5.0% |
| GGCATCCATCACCAGAAAAC+TGG | + | chr8_4:27915041-27915060 | Msa1321760:CDS | 50.0% | |
| AACGGTGAAAGTTTCCGCGA+TGG | + | chr8_4:27915157-27915176 | Msa1321760:CDS | 50.0% | |
| !! | AAGCTCTGAAGACCAGATGG+TGG | - | chr8_4:27916736-27916755 | None:intergenic | 50.0% |
| TGTCGTGTCACCACATGTGT+CGG | - | chr8_4:27917055-27917074 | None:intergenic | 50.0% | |
| GCATGCTAACATCACCATCC+AGG | - | chr8_4:27917511-27917530 | None:intergenic | 50.0% | |
| CATGCAAGAGGCAATGCCAT+GGG | + | chr8_4:27917526-27917545 | Msa1321760:CDS | 50.0% | |
| CCTCAGGGCTTCATTGTGAA+CGG | - | chr8_4:27917552-27917571 | None:intergenic | 50.0% | |
| GGAATCACGGTCAGACACTT+TGG | + | chr8_4:27917632-27917651 | Msa1321760:intron | 50.0% | |
| AACTGCTCTGTCGACACTGT+TGG | - | chr8_4:27917925-27917944 | None:intergenic | 50.0% | |
| ACAGAGAGAGGGAGAGAGAG+AGG | - | chr8_4:27914063-27914082 | None:intergenic | 55.0% | |
| !! | GTTTCCATCAGGTGGACTGC+AGG | + | chr8_4:27916457-27916476 | Msa1321760:intron | 55.0% |
| TCTTCCTGCAGTCCACCTGA+TGG | - | chr8_4:27916464-27916483 | None:intergenic | 55.0% | |
| AGACACGACACCGACACATG+TGG | + | chr8_4:27917042-27917061 | Msa1321760:intron | 55.0% | |
| TGACACGACACCGACACATG+TGG | + | chr8_4:27917065-27917084 | Msa1321760:intron | 55.0% | |
| CAAGGCGGTAAAGTGCATCG+CGG | - | chr8_4:27917454-27917473 | None:intergenic | 55.0% | |
| GCATGCAAGAGGCAATGCCA+TGG | + | chr8_4:27917525-27917544 | Msa1321760:CDS | 55.0% | |
| GCTTCATTGTGAACGGCCCA+TGG | - | chr8_4:27917545-27917564 | None:intergenic | 55.0% | |
| CCGTTCACAATGAAGCCCTG+AGG | + | chr8_4:27917549-27917568 | Msa1321760:CDS | 55.0% | |
| ACGGGTCTAGCGCAAGTGGT+TGG | - | chr8_4:27916664-27916683 | None:intergenic | 60.0% | |
| AACCACTTGCGCTAGACCCG+TGG | + | chr8_4:27916663-27916682 | Msa1321760:intron | 60.0% | |
| CACCACGGGTCTAGCGCAAG+TGG | - | chr8_4:27916668-27916687 | None:intergenic | 65.0% | |
| CACTTGCGCTAGACCCGTGG+TGG | + | chr8_4:27916666-27916685 | Msa1321760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 27913982 | 27918372 | 27913982 | ID=Msa1321760;Name=Msa1321760 |
| chr8_4 | mRNA | 27913982 | 27918372 | 27913982 | ID=Msa1321760-mRNA-1;Parent=Msa1321760;Name=Msa1321760-mRNA-1;_AED=0.24;_eAED=0.24;_QI=236|1|1|1|0.83|0.71|7|386|296 |
| chr8_4 | exon | 27913982 | 27914207 | 27913982 | ID=Msa1321760-mRNA-1:exon:9399;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27914964 | 27915344 | 27914964 | ID=Msa1321760-mRNA-1:exon:9400;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27916265 | 27916353 | 27916265 | ID=Msa1321760-mRNA-1:exon:9401;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27916468 | 27916544 | 27916468 | ID=Msa1321760-mRNA-1:exon:9402;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27917219 | 27917329 | 27917219 | ID=Msa1321760-mRNA-1:exon:9403;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27917425 | 27917570 | 27917425 | ID=Msa1321760-mRNA-1:exon:9404;Parent=Msa1321760-mRNA-1 |
| chr8_4 | exon | 27917890 | 27918372 | 27917890 | ID=Msa1321760-mRNA-1:exon:9405;Parent=Msa1321760-mRNA-1 |
| chr8_4 | five_prime_UTR | 27913982 | 27914207 | 27913982 | ID=Msa1321760-mRNA-1:five_prime_utr;Parent=Msa1321760-mRNA-1 |
| chr8_4 | five_prime_UTR | 27914964 | 27914973 | 27914964 | ID=Msa1321760-mRNA-1:five_prime_utr;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27914974 | 27915344 | 27914974 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27916265 | 27916353 | 27916265 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27916468 | 27916544 | 27916468 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27917219 | 27917329 | 27917219 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27917425 | 27917570 | 27917425 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | CDS | 27917890 | 27917986 | 27917890 | ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1 |
| chr8_4 | three_prime_UTR | 27917987 | 27918372 | 27917987 | ID=Msa1321760-mRNA-1:three_prime_utr;Parent=Msa1321760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
