AlfalfaGEDB | Msa1321760

M. sativa cultivar zhongmu-4 / Msa1321760

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321760	G7LHM0	96.622	296	10	0	1	296	1	296	0.0	597

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026280	Msa1321760	0.807615	4.636046e-50	-8.615850e-47
Msa0074140	Msa1321760	0.805729	1.159893e-49	-8.615850e-47
Msa0074180	Msa1321760	0.815079	1.111165e-51	-8.615850e-47
Msa0116590	Msa1321760	0.806240	9.055735e-50	-8.615850e-47
Msa0219920	Msa1321760	0.863263	2.820865e-64	-8.615850e-47
Msa0299220	Msa1321760	0.806914	6.526274e-50	-8.615850e-47
Msa0448980	Msa1321760	0.823856	1.105822e-53	-8.615850e-47
Msa0792480	Msa1321760	0.921760	2.363967e-88	-8.615850e-47
Msa1186960	Msa1321760	0.921040	5.949719e-88	-8.615850e-47
Msa1241140	Msa1321760	0.915152	8.262756e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1321760	MtrunA17_Chr8g0353801	96.622	296	10	0	1	296	1	296	0.0	597

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 67 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCAGAATGTAGTAG+AGG	0.618804	8_4:+27917484	Msa1321760:CDS
AAAAGAACAAAACTTGTTGA+AGG	0.475973	8_4:-27914150	None:intergenic
AACCAATGCAGCAATACACC+TGG	0.625548	8_4:+27916332	Msa1321760:CDS
AACGAACGATTTCGTTGTAC+CGG	0.507721	8_4:+27914997	Msa1321760:CDS
AACGGTGAAAGTTTCCGCGA+TGG	0.584616	8_4:+27915157	Msa1321760:CDS
AACTGCTCTGTCGACACTGT+TGG	0.570993	8_4:-27917922	None:intergenic
AACTTGTTGAAGGATGAAAC+TGG	0.582612	8_4:-27914140	None:intergenic
AATGTAGTAGAGGACCTGGA+TGG	0.664719	8_4:+27917494	Msa1321760:CDS
ACAAAGTACTGAATAATTAC+AGG	0.374448	8_4:-27918075	None:intergenic
ACAACCAAAATTGAGCTGGG+TGG	0.710912	8_4:-27918148	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAAGAGTTAAGAAGCAA+TGG	-	chr8_4:27913992-27914011	None:intergenic	30.0%
TGCTAAGAACTTGAATCTAT+TGG	+	chr8_4:27914573-27914592	Msa1321760:intron	30.0%
TCATTAATTGAGGATCTAGA+AGG	+	chr8_4:27914770-27914789	Msa1321760:intron	30.0%
GATCCAACATAGTTTATACA+AGG	+	chr8_4:27914811-27914830	Msa1321760:intron	30.0%
GTTCCTTGTATAAACTATGT+TGG	-	chr8_4:27914817-27914836	None:intergenic	30.0%
ACCTAAAAATTTCATGACCA+TGG	+	chr8_4:27915102-27915121	Msa1321760:CDS	30.0%
GCTAGATTGATCTTTATCAT+AGG	-	chr8_4:27915203-27915222	None:intergenic	30.0%
TGTGTACAAGAAAATGTCAT+CGG	-	chr8_4:27915332-27915351	None:intergenic	30.0%
CCAAAAAGTGGTATATTTAC+AGG	-	chr8_4:27915638-27915657	None:intergenic	30.0%
ATAGGACTAATACCAAAAAG+TGG	-	chr8_4:27915650-27915669	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	27913982	27918372	27913982	ID=Msa1321760;Name=Msa1321760
chr8_4	mRNA	27913982	27918372	27913982	ID=Msa1321760-mRNA-1;Parent=Msa1321760;Name=Msa1321760-mRNA-1;_AED=0.24;_eAED=0.24;_QI=236\|1\|1\|1\|0.83\|0.71\|7\|386\|296
chr8_4	exon	27913982	27914207	27913982	ID=Msa1321760-mRNA-1:exon:9399;Parent=Msa1321760-mRNA-1
chr8_4	exon	27914964	27915344	27914964	ID=Msa1321760-mRNA-1:exon:9400;Parent=Msa1321760-mRNA-1
chr8_4	exon	27916265	27916353	27916265	ID=Msa1321760-mRNA-1:exon:9401;Parent=Msa1321760-mRNA-1
chr8_4	exon	27916468	27916544	27916468	ID=Msa1321760-mRNA-1:exon:9402;Parent=Msa1321760-mRNA-1
chr8_4	exon	27917219	27917329	27917219	ID=Msa1321760-mRNA-1:exon:9403;Parent=Msa1321760-mRNA-1
chr8_4	exon	27917425	27917570	27917425	ID=Msa1321760-mRNA-1:exon:9404;Parent=Msa1321760-mRNA-1
chr8_4	exon	27917890	27918372	27917890	ID=Msa1321760-mRNA-1:exon:9405;Parent=Msa1321760-mRNA-1
chr8_4	five_prime_UTR	27913982	27914207	27913982	ID=Msa1321760-mRNA-1:five_prime_utr;Parent=Msa1321760-mRNA-1
chr8_4	five_prime_UTR	27914964	27914973	27914964	ID=Msa1321760-mRNA-1:five_prime_utr;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27914974	27915344	27914974	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27916265	27916353	27916265	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27916468	27916544	27916468	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27917219	27917329	27917219	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27917425	27917570	27917425	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	CDS	27917890	27917986	27917890	ID=Msa1321760-mRNA-1:cds;Parent=Msa1321760-mRNA-1
chr8_4	three_prime_UTR	27917987	27918372	27917987	ID=Msa1321760-mRNA-1:three_prime_utr;Parent=Msa1321760-mRNA-1

Gene Sequence

>Msa1321760

ATGGATTGGTACTATGGATGTGGAACGAACGATTTCGTTGTACCGGGCGATCAAGATTTAATGGCTAGGCATCCATCACCAGAAAACTGGTCAAAATGGGGAATAAATACACCTGAAGGTTACAATTCACCTAAAAATTTCATGACCATGGATTCAGATACAACCGAATTAGAATTCAATTTCAACGGTGAAAGTTTCCGCGATGGAGTCAAGTTTGAATCATCTTCCTATGATAAAGATCAATCTAGCAGTTCAAGTGTATGTGGAGGATTGACTGAGCAATCTTTTCAACAATCACGTCATCAGCATCAACAGAATCAGCTTCAAGAACTATCATCAAGTTTCGAGCAGACCACCGATGACATTTTCTTGGATTCTATACTTGAAGATTTTCCATGTGCTGAAAACTCAAACAAGTCCTTTTACTTTTATCCTGAAAACCAATGCAGCAATACACCTGGTGGACTGCAGGAAGATATTGCAGCTTCCGAGTATCTTACATGCAATTCTAATTCTGATGACTGCTTGAACATAGAGACACTCCAAATCTTGGATCATTCTGAGCAATTCAGTGGAGATGAAGCAATGCATAAACACTCATCTATTGAAGAATCTACACTGCAGAATCTTGAGGCAATAATTTCACAGTTCAATGACAAGACTCGAATTCACTTCCGCGATGCACTTTACCGCCTTGCCAGAGATACAAAACATCAGAATGTAGTAGAGGACCTGGATGGTGATGTTAGCATGCAAGAGGCAATGCCATGGGCCGTTCACAATGAAGCCCTGAGGTCTGACGACAAGAAACCAATGGAATCAGAGACCAACAGTGTCGACAGAGCAGTTGCTAATCTCATGTTCAACGGAACCGCATATTGCGAATGTTGA

Protein sequence

>Msa1321760

MDWYYGCGTNDFVVPGDQDLMARHPSPENWSKWGINTPEGYNSPKNFMTMDSDTTELEFNFNGESFRDGVKFESSSYDKDQSSSSSVCGGLTEQSFQQSRHQHQQNQLQELSSSFEQTTDDIFLDSILEDFPCAENSNKSFYFYPENQCSNTPGGLQEDIAASEYLTCNSNSDDCLNIETLQILDHSEQFSGDEAMHKHSSIEESTLQNLEAIISQFNDKTRIHFRDALYRLARDTKHQNVVEDLDGDVSMQEAMPWAVHNEALRSDDKKPMESETNSVDRAVANLMFNGTAYCEC*