AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1186960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1186960 MtrunA17_Chr8g0353801 96.284 296 11 0 1 296 1 296 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAGAAAACTGGTCAAAA+TGG 0.212731 8_1:+26143788 Msa1186960:CDS
GTTTCCACCCAGCTCAATTT+TGG 0.250647 8_1:+26146869 Msa1186960:three_prime_UTR
ACCGGGTGATCAAGATTTAA+TGG 0.319285 8_1:+26143753 Msa1186960:CDS
TTAGGTGAATTGTAACCTTC+AGG 0.333912 8_1:-26143823 None:intergenic
GCTCAGAATGATCCAAGATT+TGG 0.336181 8_1:-26145953 None:intergenic
ACTGAATAATTACAGGGAAT+TGG 0.336493 8_1:-26146793 None:intergenic
TTTGCCATGGATTGGTACTA+TGG 0.347002 8_1:+26143706 Msa1186960:exon
TTTGGTTGTAATGTAAGTTA+TGG 0.363543 8_1:+26146887 Msa1186960:three_prime_UTR
TGCATGAACAATCTCTTAGT+TGG 0.367739 8_1:-26146713 None:intergenic
ACAAAGTACTGAATAATTAC+AGG 0.374448 8_1:-26146800 None:intergenic
GCTAGATTGATCTTTATCAT+AGG 0.391039 8_1:-26143938 None:intergenic
ACCAGAAAACTGGTCAAAAT+GGG 0.398356 8_1:+26143789 Msa1186960:CDS
TACCAGGTGTATTGCTGCAT+TGG 0.399806 8_1:-26145067 None:intergenic
TTCTGTTGTATTTGAATCCA+TGG 0.401018 8_1:-26143857 None:intergenic
GGCATCCATCACCAGAAAAC+TGG 0.409517 8_1:+26143779 Msa1186960:CDS
GCCACAGACACTCCAAATCT+TGG 0.413559 8_1:+26145941 Msa1186960:intron
TACATAATACATATAACTTC+TGG 0.435133 8_1:-26146824 None:intergenic
GTTCGAACTTGCCTCCGTTA+CGG 0.441490 8_1:-26143909 None:intergenic
TACATTCAAACAAAATATCA+AGG 0.459131 8_1:-26146985 None:intergenic
CATTACAACCAAAATTGAGC+TGG 0.460144 8_1:-26146877 None:intergenic
ACAGACTATTTGCCATGGAT+TGG 0.463656 8_1:+26143698 Msa1186960:intron
CTGTTGGTCTCTGATTCCAT+TGG 0.476213 8_1:-26146631 None:intergenic
TATTATGTAAGTCTTGTTCA+AGG 0.494533 8_1:+26146838 Msa1186960:three_prime_UTR
TGGAGTTTGTTAGCTATGCT+AGG 0.498087 8_1:+26146907 Msa1186960:three_prime_UTR
GTTTCCATCAGGTGGACTGC+AGG 0.502214 8_1:+26145192 Msa1186960:intron
AAAAGAACAAGACTTGTTGA+AGG 0.503291 8_1:-26142891 None:intergenic
TGATCTTTATCATAGGAAGA+TGG 0.503376 8_1:-26143931 None:intergenic
AACGAACGATTTCGTTGTAC+CGG 0.505282 8_1:+26143735 Msa1186960:CDS
TAGCAAATGAAATGTTATGT+TGG 0.524027 8_1:-26142768 None:intergenic
GGAGTTTGTTAGCTATGCTA+GGG 0.525334 8_1:+26146908 Msa1186960:three_prime_UTR
TCTTGAGGCAATAATTTCAC+AGG 0.527177 8_1:+26146037 Msa1186960:CDS
TGATGATTGCTTGAACATAG+AGG 0.536604 8_1:+26145258 Msa1186960:CDS
TAAGAAGAGTTAAGAAGCAA+GGG 0.537928 8_1:-26142724 None:intergenic
GCATGCTAACATCACCATCC+AGG 0.540288 8_1:-26146237 None:intergenic
TCTAGCAGTTCAAGTGTATG+TGG 0.542953 8_1:+26143955 Msa1186960:CDS
GTAAGAAGAGTTAAGAAGCA+AGG 0.551282 8_1:-26142725 None:intergenic
CATTTACAGACTATTTGCCA+TGG 0.556600 8_1:+26143693 Msa1186960:intron
ATTACAACCAAAATTGAGCT+GGG 0.568507 8_1:-26146876 None:intergenic
AACTGCTCTGTCGACACTGT+TGG 0.570993 8_1:-26146647 None:intergenic
ATGGATTGGTACTATGGATG+TGG 0.574082 8_1:+26143712 Msa1186960:CDS
GATCATTCTGAGCAATTCAG+TGG 0.574655 8_1:+26145963 Msa1186960:CDS
CATGCAAGAGGCAATGCCAT+GGG 0.575721 8_1:+26146255 Msa1186960:CDS
GCTTCATTGTGAACTGCCCA+TGG 0.576976 8_1:-26146271 None:intergenic
GCATGCAAGAGGCAATGCCA+TGG 0.580050 8_1:+26146254 Msa1186960:CDS
ACGAACGATTTCGTTGTACC+GGG 0.581297 8_1:+26143736 Msa1186960:CDS
AACAGTGAAAGTTTCCGTAA+CGG 0.582112 8_1:+26143895 Msa1186960:CDS
GCCATTAAATCTTGATCACC+CGG 0.586026 8_1:-26143754 None:intergenic
GTGATCAAGATTTAATGGCT+AGG 0.589845 8_1:+26143758 Msa1186960:CDS
TCAGAATGTAGTAGAGGACC+TGG 0.590986 8_1:+26146219 Msa1186960:CDS
CAAAGTACTGAATAATTACA+GGG 0.592729 8_1:-26146799 None:intergenic
TGGGGAATAAATACACCTGA+AGG 0.602852 8_1:+26143808 Msa1186960:CDS
GTCTGACGACAAGAAACCAA+TGG 0.611234 8_1:+26146615 Msa1186960:CDS
ATCTACACTGCAGAATCTTG+AGG 0.615256 8_1:+26146022 Msa1186960:CDS
AAAACATCAGAATGTAGTAG+AGG 0.618804 8_1:+26146213 Msa1186960:CDS
AGAGTTGCATGTAAGATACT+CGG 0.620268 8_1:-26145230 None:intergenic
GGATCAGCATTCGCAATATG+CGG 0.622444 8_1:-26146692 None:intergenic
AACCAATGCAGCAATACACC+TGG 0.625548 8_1:+26145065 Msa1186960:CDS
ACATCCATAGTACCAATCCA+TGG 0.634261 8_1:-26143710 None:intergenic
CCAGAAAACTGGTCAAAATG+GGG 0.639085 8_1:+26143790 Msa1186960:CDS
TGTGTACAAGAAAATGTCAT+CGG 0.643710 8_1:-26144067 None:intergenic
GTTGCTAATCTCATGTTCAA+CGG 0.648717 8_1:+26146667 Msa1186960:CDS
GGTCAGGCAATGCAATTCTG+AGG 0.656482 8_1:+26146742 Msa1186960:three_prime_UTR
AATGTAGTAGAGGACCTGGA+TGG 0.664719 8_1:+26146223 Msa1186960:CDS
AGCAGTTCAAGTGTATGTGG+AGG 0.666769 8_1:+26143958 Msa1186960:CDS
CAGTTCACAATGAAGCCTTG+AGG 0.672028 8_1:+26146278 Msa1186960:CDS
TGGTGATGTTAGCATGCAAG+AGG 0.691812 8_1:+26146243 Msa1186960:CDS
AGTGAAAGTTTCCGTAACGG+AGG 0.695504 8_1:+26143898 Msa1186960:CDS
GTACAAGAAAATGTCATCGG+TGG 0.696106 8_1:-26144064 None:intergenic
ACAACCAAAATTGAGCTGGG+TGG 0.710912 8_1:-26146873 None:intergenic
CAAGGCGGTAAAGTGCATCG+CGG 0.772895 8_1:-26146180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTATATACTTATTACA+GGG - chr8_1:26144599-26144618 None:intergenic 10.0%
!!! ATTCAAAATTATTTTTTACA+GGG + chr8_1:26144747-26144766 Msa1186960:intron 10.0%
!!! GATAAAGTTTAAATTTTTTG+TGG + chr8_1:26143072-26143091 Msa1186960:intron 15.0%
!!! AATTAAGTTTTCATTAATTG+AGG + chr8_1:26143498-26143517 Msa1186960:intron 15.0%
!!! AAATGAAATTCTTTTTCAAT+GGG - chr8_1:26144406-26144425 None:intergenic 15.0%
!!! ATATACTACTTTTTTACTTT+TGG + chr8_1:26144437-26144456 Msa1186960:intron 15.0%
!!! TCGAACTAAATTTTTATATA+AGG - chr8_1:26144493-26144512 None:intergenic 15.0%
!!! AATATACTACTTTTTACATT+TGG + chr8_1:26144521-26144540 Msa1186960:intron 15.0%
!!! TTCAAAATGAACAAATTTTA+CGG - chr8_1:26144570-26144589 None:intergenic 15.0%
!! GAATATTATATACTTATTAC+AGG - chr8_1:26144600-26144619 None:intergenic 15.0%
!!! GATTCAAAATTATTTTTTAC+AGG + chr8_1:26144746-26144765 Msa1186960:intron 15.0%
!! AAAATCCAATTAAAAGAAAA+AGG - chr8_1:26145736-26145755 None:intergenic 15.0%
!!! TTATTTTTGCAGTGTTTTTA+TGG + chr8_1:26142994-26143013 Msa1186960:intron 20.0%
!! AAGAGTAACATTAAAACTAA+TGG - chr8_1:26143198-26143217 None:intergenic 20.0%
!! AATGAAAACTTAATTGAACA+TGG - chr8_1:26143493-26143512 None:intergenic 20.0%
!! AAGATAAATATGGTGAAATT+TGG - chr8_1:26144245-26144264 None:intergenic 20.0%
!! ACCATATTTATCTTTATCAT+TGG + chr8_1:26144251-26144270 Msa1186960:intron 20.0%
!! TCCAATGATAAAGATAAATA+TGG - chr8_1:26144255-26144274 None:intergenic 20.0%
!!! CAAATGAAATTCTTTTTCAA+TGG - chr8_1:26144407-26144426 None:intergenic 20.0%
!! AAAAAAGTAGTATATTTGCA+AGG - chr8_1:26144432-26144451 None:intergenic 20.0%
!! TAAAAAGTAGTATATTTGCA+AGG - chr8_1:26144517-26144536 None:intergenic 20.0%
!! TTACGATTAAGAATTGAATT+TGG + chr8_1:26145319-26145338 Msa1186960:intron 20.0%
!! AATTAAAAGAAAAAGGAGAA+AGG - chr8_1:26145729-26145748 None:intergenic 20.0%
!!! TTTCTCCTTTTTCTTTTAAT+TGG + chr8_1:26145728-26145747 Msa1186960:intron 20.0%
!! TACATAATACATATAACTTC+TGG - chr8_1:26146827-26146846 None:intergenic 20.0%
!! TACATTCAAACAAAATATCA+AGG - chr8_1:26146988-26147007 None:intergenic 20.0%
! TAGCAAATGAAATGTTATGT+TGG - chr8_1:26142771-26142790 None:intergenic 25.0%
!!! AACATACTTTTTCTTGAAGA+TGG - chr8_1:26142937-26142956 None:intergenic 25.0%
!!! GTTTTTTTGTTTTTGATGCT+TGG + chr8_1:26143094-26143113 Msa1186960:intron 25.0%
!!! ATTTTAAAGCTTAACTGAAG+TGG + chr8_1:26143125-26143144 Msa1186960:intron 25.0%
!!! TTTTAAAGCTTAACTGAAGT+GGG + chr8_1:26143126-26143145 Msa1186960:intron 25.0%
!!! GGTTTTGATTCTTTTCATAA+GGG + chr8_1:26143147-26143166 Msa1186960:intron 25.0%
!!! GTTTTTGAAGTTGGTTTTTA+TGG + chr8_1:26143269-26143288 Msa1186960:intron 25.0%
!!! GTTGATAACACAGTTTTAAA+GGG + chr8_1:26143454-26143473 Msa1186960:intron 25.0%
! ATAGTTTATACAAGGAACAT+AGG + chr8_1:26143557-26143576 Msa1186960:intron 25.0%
! CATGATGATTATTATCATAC+AGG - chr8_1:26144130-26144149 None:intergenic 25.0%
!! TTGAGGTTTACATATGTTTT+TGG + chr8_1:26144348-26144367 Msa1186960:intron 25.0%
! TTGAATTAATTTCATGCCTA+TGG - chr8_1:26144921-26144940 None:intergenic 25.0%
!!! GTTTTCAGGATAAAAGTAAA+AGG - chr8_1:26145048-26145067 None:intergenic 25.0%
! CAAATTTCTCAAATTACTAC+TGG + chr8_1:26145823-26145842 Msa1186960:intron 25.0%
! AATCTAAATCATATACCTCA+AGG - chr8_1:26146296-26146315 None:intergenic 25.0%
!! AGAAAATAGAAGTGTATGTT+TGG - chr8_1:26146439-26146458 None:intergenic 25.0%
!! TCAAACACATACTTTAAGTT+TGG - chr8_1:26146466-26146485 None:intergenic 25.0%
! TTTACAAAATCAAGATCATC+AGG - chr8_1:26146512-26146531 None:intergenic 25.0%
!!! CAAAGTACTGAATAATTACA+GGG - chr8_1:26146802-26146821 None:intergenic 25.0%
!!! ACAAAGTACTGAATAATTAC+AGG - chr8_1:26146803-26146822 None:intergenic 25.0%
!!! TATTATGTAAGTCTTGTTCA+AGG + chr8_1:26146838-26146857 Msa1186960:three_prime_UTR 25.0%
! TTTGGTTGTAATGTAAGTTA+TGG + chr8_1:26146887-26146906 Msa1186960:three_prime_UTR 25.0%
!!! GAGTTTATAGACCATTTTTT+TGG + chr8_1:26147016-26147035 Msa1186960:three_prime_UTR 25.0%
TAAGAAGAGTTAAGAAGCAA+GGG - chr8_1:26142727-26142746 None:intergenic 30.0%
!! AAAAGAACAAGACTTGTTGA+AGG - chr8_1:26142894-26142913 None:intergenic 30.0%
GCTTTGATGTGAAATATATG+TGG + chr8_1:26143033-26143052 Msa1186960:intron 30.0%
!!! GGGTTTTGATTCTTTTCATA+AGG + chr8_1:26143146-26143165 Msa1186960:intron 30.0%
! TCTTTTCATAAGGGTTGAAA+AGG + chr8_1:26143156-26143175 Msa1186960:intron 30.0%
! CTTTTCATAAGGGTTGAAAA+GGG + chr8_1:26143157-26143176 Msa1186960:intron 30.0%
TGAATGAAGTTTCCTATGAT+TGG + chr8_1:26143219-26143238 Msa1186960:intron 30.0%
AAACTCTTTGAACCAATCAT+AGG - chr8_1:26143234-26143253 None:intergenic 30.0%
!!! AGAGTTTTTTCCAAATCTTC+AGG + chr8_1:26143247-26143266 Msa1186960:intron 30.0%
ACTTCAAAAACCTGAAGATT+TGG - chr8_1:26143260-26143279 None:intergenic 30.0%
!!! AATCTTCAGGTTTTTGAAGT+TGG + chr8_1:26143260-26143279 Msa1186960:intron 30.0%
TGCTAAGAACTTGAATCTAT+TGG + chr8_1:26143311-26143330 Msa1186960:intron 30.0%
!!! CGTTGATAACACAGTTTTAA+AGG + chr8_1:26143453-26143472 Msa1186960:intron 30.0%
TCATTAATTGAGGATCTAGA+AGG + chr8_1:26143508-26143527 Msa1186960:intron 30.0%
GATCCAACATAGTTTATACA+AGG + chr8_1:26143549-26143568 Msa1186960:intron 30.0%
GTTCCTTGTATAAACTATGT+TGG - chr8_1:26143555-26143574 None:intergenic 30.0%
CAAGATCAGCATATAGAAAA+TGG - chr8_1:26143661-26143680 None:intergenic 30.0%
ACCTAAAAATTTCATGACCA+TGG + chr8_1:26143840-26143859 Msa1186960:CDS 30.0%
! TCCATGGTCATGAAATTTTT+AGG - chr8_1:26143844-26143863 None:intergenic 30.0%
TTCTGTTGTATTTGAATCCA+TGG - chr8_1:26143860-26143879 None:intergenic 30.0%
TGATCTTTATCATAGGAAGA+TGG - chr8_1:26143934-26143953 None:intergenic 30.0%
GCTAGATTGATCTTTATCAT+AGG - chr8_1:26143941-26143960 None:intergenic 30.0%
TGTGTACAAGAAAATGTCAT+CGG - chr8_1:26144070-26144089 None:intergenic 30.0%
CAAAAAGTGGCATATTTACA+GGG - chr8_1:26144375-26144394 None:intergenic 30.0%
!!! ACATTTGGTCTTTGTTGTTT+TGG + chr8_1:26144536-26144555 Msa1186960:intron 30.0%
CAAATAGTGTACATATTGCA+CGG + chr8_1:26144660-26144679 Msa1186960:intron 30.0%
CAACAATGACCTAAAGTAAA+AGG + chr8_1:26144706-26144725 Msa1186960:intron 30.0%
! TATACTGCACCTTTTACTTT+AGG - chr8_1:26144718-26144737 None:intergenic 30.0%
!!! AGGGATTTTAAAGCAAAAAG+TGG + chr8_1:26144766-26144785 Msa1186960:intron 30.0%
TCATTTGTTTCACATAATGC+AGG + chr8_1:26144976-26144995 Msa1186960:intron 30.0%
CATTTGTTTCACATAATGCA+GGG + chr8_1:26144977-26144996 Msa1186960:intron 30.0%
GTGTAAAAAGAGTTATTACC+AGG - chr8_1:26145086-26145105 None:intergenic 30.0%
CAATACCATAGAAATTGTTG+AGG - chr8_1:26145137-26145156 None:intergenic 30.0%
AGAATTGAATTTGGTATCTC+AGG + chr8_1:26145328-26145347 Msa1186960:intron 30.0%
GAATTGAATTTGGTATCTCA+GGG + chr8_1:26145329-26145348 Msa1186960:intron 30.0%
! TCCAAATACTCTTGTTTATG+TGG + chr8_1:26145478-26145497 Msa1186960:intron 30.0%
!! CATTTGTTATACACCAGTAT+AGG + chr8_1:26145510-26145529 Msa1186960:intron 30.0%
AAAAACATCATTGCAAAGCA+TGG - chr8_1:26145556-26145575 None:intergenic 30.0%
!!! CATATACGCTTTTTGAGTTT+TGG - chr8_1:26145611-26145630 None:intergenic 30.0%
TTAAGCTGTTTATCCAATCA+TGG + chr8_1:26145657-26145676 Msa1186960:intron 30.0%
!!! TTACAAAGCTTTTGAGTTTG+AGG - chr8_1:26145683-26145702 None:intergenic 30.0%
! CAAACTCAAAAGCTTTGTAA+AGG + chr8_1:26145683-26145702 Msa1186960:intron 30.0%
TGAACTAGTTAAGAGAGAAA+GGG - chr8_1:26146138-26146157 None:intergenic 30.0%
TTGAACTAGTTAAGAGAGAA+AGG - chr8_1:26146139-26146158 None:intergenic 30.0%
! ATTCTGATGTTTTGTATCTC+TGG - chr8_1:26146206-26146225 None:intergenic 30.0%
AAAACATCAGAATGTAGTAG+AGG + chr8_1:26146213-26146232 Msa1186960:CDS 30.0%
! CAAATGCTACCTTTGTTTAT+AGG + chr8_1:26146593-26146612 Msa1186960:intron 30.0%
GAGATTGTTCATGCAAAAAT+TGG + chr8_1:26146721-26146740 Msa1186960:three_prime_UTR 30.0%
ACTGAATAATTACAGGGAAT+TGG - chr8_1:26146796-26146815 None:intergenic 30.0%
ATTACAACCAAAATTGAGCT+GGG - chr8_1:26146879-26146898 None:intergenic 30.0%
! ATGCTAGGGTAAGAAATTTT+AGG + chr8_1:26146922-26146941 Msa1186960:three_prime_UTR 30.0%
ACACTCATAGAAGAAAAACT+AGG - chr8_1:26146959-26146978 None:intergenic 30.0%
ACTCAAGTTTGCCAAAAAAA+TGG - chr8_1:26147030-26147049 None:intergenic 30.0%
!!! TTTTTTGGCAAACTTGAGTT+AGG + chr8_1:26147031-26147050 Msa1186960:three_prime_UTR 30.0%
!!! AGTTAGGTCAGAATTTTTTG+TGG + chr8_1:26147047-26147066 Msa1186960:three_prime_UTR 30.0%
!!! GTTAGGTCAGAATTTTTTGT+GGG + chr8_1:26147048-26147067 Msa1186960:three_prime_UTR 30.0%
GTAAGAAGAGTTAAGAAGCA+AGG - chr8_1:26142728-26142747 None:intergenic 35.0%
!! GTATGAGTGAGTTTTGTGAT+AGG - chr8_1:26142831-26142850 None:intergenic 35.0%
TTGAAAAGGGTTAAGAGTAG+TGG + chr8_1:26143170-26143189 Msa1186960:intron 35.0%
AGCATACACTTGAAGAAACT+AGG - chr8_1:26143295-26143314 None:intergenic 35.0%
CATTTACAGACTATTTGCCA+TGG + chr8_1:26143693-26143712 Msa1186960:intron 35.0%
GTGATCAAGATTTAATGGCT+AGG + chr8_1:26143758-26143777 Msa1186960:CDS 35.0%
ACCAGAAAACTGGTCAAAAT+GGG + chr8_1:26143789-26143808 Msa1186960:CDS 35.0%
TTAGGTGAATTGTAACCTTC+AGG - chr8_1:26143826-26143845 None:intergenic 35.0%
AACAGTGAAAGTTTCCGTAA+CGG + chr8_1:26143895-26143914 Msa1186960:CDS 35.0%
!! ACTTCTGGGATTAATATGCT+TGG + chr8_1:26144096-26144115 Msa1186960:intron 35.0%
! ATAGAGCATTCAATTTCCAC+TGG - chr8_1:26144208-26144227 None:intergenic 35.0%
TCATTGGAGCCAAAACAAAA+TGG + chr8_1:26144267-26144286 Msa1186960:intron 35.0%
TTCATGCTTATAGAGTTGTG+CGG - chr8_1:26144295-26144314 None:intergenic 35.0%
AAGCATGAACCTGTTATAGT+AGG + chr8_1:26144306-26144325 Msa1186960:intron 35.0%
AGCATGAACCTGTTATAGTA+GGG + chr8_1:26144307-26144326 Msa1186960:intron 35.0%
AACCTGTTATAGTAGGGTAA+GGG + chr8_1:26144313-26144332 Msa1186960:intron 35.0%
! AAGGGCTACTATTTTCTTTG+AGG + chr8_1:26144331-26144350 Msa1186960:intron 35.0%
CCAAAAAGTGGCATATTTAC+AGG - chr8_1:26144376-26144395 None:intergenic 35.0%
!!! CCTGTAAATATGCCACTTTT+TGG + chr8_1:26144373-26144392 Msa1186960:intron 35.0%
ATGGGACTAATACCAAAAAG+TGG - chr8_1:26144388-26144407 None:intergenic 35.0%
!!! CTTTTGGTTCTTTGCTGTTT+TGG + chr8_1:26144453-26144472 Msa1186960:intron 35.0%
AGTCCTTATGTAACCTGTAT+TGG + chr8_1:26144625-26144644 Msa1186960:intron 35.0%
GTCCTTATGTAACCTGTATT+GGG + chr8_1:26144626-26144645 Msa1186960:intron 35.0%
TCCTTATGTAACCTGTATTG+GGG + chr8_1:26144627-26144646 Msa1186960:intron 35.0%
! TATTGCACGGACTAATTCAA+AGG + chr8_1:26144673-26144692 Msa1186960:intron 35.0%
! AAAGGTGCAGTATATTTGCA+AGG + chr8_1:26144724-26144743 Msa1186960:intron 35.0%
GCAAAAAGTGGTAGATTTGT+TGG + chr8_1:26144778-26144797 Msa1186960:intron 35.0%
!! TTGTTTGAGTTTTCAGCACA+GGG - chr8_1:26145023-26145042 None:intergenic 35.0%
AGTTGCCTCAACAATTTCTA+TGG + chr8_1:26145129-26145148 Msa1186960:intron 35.0%
AGAGTTGCATGTAAGATACT+CGG - chr8_1:26145233-26145252 None:intergenic 35.0%
TGATGATTGCTTGAACATAG+AGG + chr8_1:26145258-26145277 Msa1186960:CDS 35.0%
!! AAAAAGTTCTGAAGACCAGA+TGG - chr8_1:26145450-26145469 None:intergenic 35.0%
!! GCCACATAAACAAGAGTATT+TGG - chr8_1:26145482-26145501 None:intergenic 35.0%
! GTGTATAACAAATGACTTGC+AGG - chr8_1:26145504-26145523 None:intergenic 35.0%
GAGAAAGGTCTCAAAAACAA+GGG - chr8_1:26145714-26145733 None:intergenic 35.0%
TCTTGAGGCAATAATTTCAC+AGG + chr8_1:26146037-26146056 Msa1186960:CDS 35.0%
GAAGTGTATGTTTGGTTGAA+CGG - chr8_1:26146431-26146450 None:intergenic 35.0%
GTTGCTAATCTCATGTTCAA+CGG + chr8_1:26146667-26146686 Msa1186960:CDS 35.0%
TGCATGAACAATCTCTTAGT+TGG - chr8_1:26146716-26146735 None:intergenic 35.0%
TGTTCATGCAAAAATTGGTC+AGG + chr8_1:26146726-26146745 Msa1186960:three_prime_UTR 35.0%
CATTACAACCAAAATTGAGC+TGG - chr8_1:26146880-26146899 None:intergenic 35.0%
ACGCAGATCGAAGAAAATAG+TGG - chr8_1:26143436-26143455 None:intergenic 40.0%
ACAGACTATTTGCCATGGAT+TGG + chr8_1:26143698-26143717 Msa1186960:intron 40.0%
!! TTTGCCATGGATTGGTACTA+TGG + chr8_1:26143706-26143725 Msa1186960:exon 40.0%
ACATCCATAGTACCAATCCA+TGG - chr8_1:26143713-26143732 None:intergenic 40.0%
!! ATGGATTGGTACTATGGATG+TGG + chr8_1:26143712-26143731 Msa1186960:CDS 40.0%
AACGAACGATTTCGTTGTAC+CGG + chr8_1:26143735-26143754 Msa1186960:CDS 40.0%
ACCGGGTGATCAAGATTTAA+TGG + chr8_1:26143753-26143772 Msa1186960:CDS 40.0%
GCCATTAAATCTTGATCACC+CGG - chr8_1:26143757-26143776 None:intergenic 40.0%
!! TTTGACCAGTTTTCTGGTGA+TGG - chr8_1:26143787-26143806 None:intergenic 40.0%
CACCAGAAAACTGGTCAAAA+TGG + chr8_1:26143788-26143807 Msa1186960:CDS 40.0%
CCAGAAAACTGGTCAAAATG+GGG + chr8_1:26143790-26143809 Msa1186960:CDS 40.0%
TGGGGAATAAATACACCTGA+AGG + chr8_1:26143808-26143827 Msa1186960:CDS 40.0%
TCTAGCAGTTCAAGTGTATG+TGG + chr8_1:26143955-26143974 Msa1186960:CDS 40.0%
GTACAAGAAAATGTCATCGG+TGG - chr8_1:26144067-26144086 None:intergenic 40.0%
TTGTACACAAGCGTAACTTC+TGG + chr8_1:26144081-26144100 Msa1186960:intron 40.0%
TGTACACAAGCGTAACTTCT+GGG + chr8_1:26144082-26144101 Msa1186960:intron 40.0%
ATGCAAAGCATACTCATGCT+AGG - chr8_1:26144174-26144193 None:intergenic 40.0%
!! TGCATTTTAGCAAAGTCCAG+TGG + chr8_1:26144189-26144208 Msa1186960:intron 40.0%
!! TGTGCGGAACCATTTTGTTT+TGG - chr8_1:26144279-26144298 None:intergenic 40.0%
GAACCTGTTATAGTAGGGTA+AGG + chr8_1:26144312-26144331 Msa1186960:intron 40.0%
!!! CTGTTTTGGTTAAGCAGTTC+AGG + chr8_1:26144467-26144486 Msa1186960:intron 40.0%
CCTTATGTAACCTGTATTGG+GGG + chr8_1:26144628-26144647 Msa1186960:intron 40.0%
CTTATGTAACCTGTATTGGG+GGG + chr8_1:26144629-26144648 Msa1186960:intron 40.0%
CAGAGACATTCAATTCTCAC+TGG + chr8_1:26144892-26144911 Msa1186960:intron 40.0%
!! CTTGTTTGAGTTTTCAGCAC+AGG - chr8_1:26145024-26145043 None:intergenic 40.0%
!!! GTATTGCTGCATTGGTTTTC+AGG - chr8_1:26145062-26145081 None:intergenic 40.0%
!! TGCGTTCTTTTGTTTCCATC+AGG + chr8_1:26145181-26145200 Msa1186960:intron 40.0%
!! GTTCTTTTGTTTCCATCAGG+TGG + chr8_1:26145184-26145203 Msa1186960:intron 40.0%
! AGATTCCTGTTTTACAACCG+CGG - chr8_1:26145394-26145413 None:intergenic 40.0%
CAGCATGAAATGACCTATAC+TGG - chr8_1:26145526-26145545 None:intergenic 40.0%
CATCACAAGTTCACAACACA+AGG + chr8_1:26145584-26145603 Msa1186960:intron 40.0%
! TTTGAGTTTGAGGCCATGAT+TGG - chr8_1:26145673-26145692 None:intergenic 40.0%
GGAGAAAGGTCTCAAAAACA+AGG - chr8_1:26145715-26145734 None:intergenic 40.0%
TTGAATGTAACCACATGTGC+CGG - chr8_1:26145798-26145817 None:intergenic 40.0%
GCTCAGAATGATCCAAGATT+TGG - chr8_1:26145956-26145975 None:intergenic 40.0%
GATCATTCTGAGCAATTCAG+TGG + chr8_1:26145963-26145982 Msa1186960:CDS 40.0%
ATCTACACTGCAGAATCTTG+AGG + chr8_1:26146022-26146041 Msa1186960:CDS 40.0%
GCACATTAAATCAGATGCGA+AGG - chr8_1:26146087-26146106 None:intergenic 40.0%
! GATGTTTTGTATCTCTGGCA+AGG - chr8_1:26146201-26146220 None:intergenic 40.0%
GTCGTCAGACCTATAAACAA+AGG - chr8_1:26146605-26146624 None:intergenic 40.0%
!! TGGAGTTTGTTAGCTATGCT+AGG + chr8_1:26146907-26146926 Msa1186960:three_prime_UTR 40.0%
!! GGAGTTTGTTAGCTATGCTA+GGG + chr8_1:26146908-26146927 Msa1186960:three_prime_UTR 40.0%
ACGAACGATTTCGTTGTACC+GGG + chr8_1:26143736-26143755 Msa1186960:CDS 45.0%
!! CCCCATTTTGACCAGTTTTC+TGG - chr8_1:26143793-26143812 None:intergenic 45.0%
AGTGAAAGTTTCCGTAACGG+AGG + chr8_1:26143898-26143917 Msa1186960:CDS 45.0%
AGCAGTTCAAGTGTATGTGG+AGG + chr8_1:26143958-26143977 Msa1186960:CDS 45.0%
AGCCCTTACCCTACTATAAC+AGG - chr8_1:26144318-26144337 None:intergenic 45.0%
CCCCCAATACAGGTTACATA+AGG - chr8_1:26144631-26144650 None:intergenic 45.0%
!! GATTTTAGTCCCCCCAATAC+AGG - chr8_1:26144641-26144660 None:intergenic 45.0%
! CAATTCTCACTGGCTACCAT+AGG + chr8_1:26144902-26144921 Msa1186960:intron 45.0%
AACCAATGCAGCAATACACC+TGG + chr8_1:26145065-26145084 Msa1186960:CDS 45.0%
TACCAGGTGTATTGCTGCAT+TGG - chr8_1:26145070-26145089 None:intergenic 45.0%
! GATTCCTGTTTTACAACCGC+GGG - chr8_1:26145393-26145412 None:intergenic 45.0%
GTCAAATATGAGCCACCATC+TGG + chr8_1:26145432-26145451 Msa1186960:intron 45.0%
!! AAGTTCTGAAGACCAGATGG+TGG - chr8_1:26145447-26145466 None:intergenic 45.0%
GTCAATGTCAGTGTCATCTC+TGG + chr8_1:26145855-26145874 Msa1186960:intron 45.0%
TCCTGTCTGTCAATGCTTCA+TGG + chr8_1:26145881-26145900 Msa1186960:intron 45.0%
!! ACCATGAAGCATTGACAGAC+AGG - chr8_1:26145885-26145904 None:intergenic 45.0%
! TCCAAGATTTGGAGTGTCTG+TGG - chr8_1:26145945-26145964 None:intergenic 45.0%
! GTTTTGTATCTCTGGCAAGG+CGG - chr8_1:26146198-26146217 None:intergenic 45.0%
TCAGAATGTAGTAGAGGACC+TGG + chr8_1:26146219-26146238 Msa1186960:CDS 45.0%
AATGTAGTAGAGGACCTGGA+TGG + chr8_1:26146223-26146242 Msa1186960:CDS 45.0%
! TGGTGATGTTAGCATGCAAG+AGG + chr8_1:26146243-26146262 Msa1186960:CDS 45.0%
CAGTTCACAATGAAGCCTTG+AGG + chr8_1:26146278-26146297 Msa1186960:CDS 45.0%
TCGATTGACAGCGAGATTGT+CGG + chr8_1:26146340-26146359 Msa1186960:intron 45.0%
CGGTGAGTTTGGCAAAATCA+CGG - chr8_1:26146411-26146430 None:intergenic 45.0%
GTTTGGTTGAACGGTGAGTT+TGG - chr8_1:26146422-26146441 None:intergenic 45.0%
GTCTGACGACAAGAAACCAA+TGG + chr8_1:26146615-26146634 Msa1186960:CDS 45.0%
! CTGTTGGTCTCTGATTCCAT+TGG - chr8_1:26146634-26146653 None:intergenic 45.0%
GGATCAGCATTCGCAATATG+CGG - chr8_1:26146695-26146714 None:intergenic 45.0%
! GTTTCCACCCAGCTCAATTT+TGG + chr8_1:26146869-26146888 Msa1186960:three_prime_UTR 45.0%
ACAACCAAAATTGAGCTGGG+TGG - chr8_1:26146876-26146895 None:intergenic 45.0%
AGAGAGACAGAGAGAGAGAG+AGG - chr8_1:26142800-26142819 None:intergenic 50.0%
GGCATCCATCACCAGAAAAC+TGG + chr8_1:26143779-26143798 Msa1186960:CDS 50.0%
GTTCGAACTTGCCTCCGTTA+CGG - chr8_1:26143912-26143931 None:intergenic 50.0%
TAGACCCGCGGTTGTAAAAC+AGG + chr8_1:26145386-26145405 Msa1186960:intron 50.0%
CGTGTCATGTCAGGGTGATA+TGG - chr8_1:26145767-26145786 None:intergenic 50.0%
TGTCGTGTCGTGTCATGTCA+GGG - chr8_1:26145775-26145794 None:intergenic 50.0%
GCCACAGACACTCCAAATCT+TGG + chr8_1:26145941-26145960 Msa1186960:intron 50.0%
GCATGCTAACATCACCATCC+AGG - chr8_1:26146240-26146259 None:intergenic 50.0%
CATGCAAGAGGCAATGCCAT+GGG + chr8_1:26146255-26146274 Msa1186960:CDS 50.0%
GCTTCATTGTGAACTGCCCA+TGG - chr8_1:26146274-26146293 None:intergenic 50.0%
CAGCGAGATTGTCGGAATCA+CGG + chr8_1:26146348-26146367 Msa1186960:intron 50.0%
GGAATCACGGTCAGACACTT+TGG + chr8_1:26146361-26146380 Msa1186960:intron 50.0%
AACTGCTCTGTCGACACTGT+TGG - chr8_1:26146650-26146669 None:intergenic 50.0%
GGTCAGGCAATGCAATTCTG+AGG + chr8_1:26146742-26146761 Msa1186960:three_prime_UTR 50.0%
GAGACAGAGAGAGAGAGAGG+CGG - chr8_1:26142797-26142816 None:intergenic 55.0%
!! GTTTCCATCAGGTGGACTGC+AGG + chr8_1:26145192-26145211 Msa1186960:intron 55.0%
TCTTCCTGCAGTCCACCTGA+TGG - chr8_1:26145199-26145218 None:intergenic 55.0%
GTGTCGTGTCGTGTCATGTC+AGG - chr8_1:26145776-26145795 None:intergenic 55.0%
GACATGACACGACACGACAC+CGG + chr8_1:26145776-26145795 Msa1186960:intron 55.0%
CAAGGCGGTAAAGTGCATCG+CGG - chr8_1:26146183-26146202 None:intergenic 55.0%
GCATGCAAGAGGCAATGCCA+TGG + chr8_1:26146254-26146273 Msa1186960:CDS 55.0%
AACCACTAGCGCTAGACCCG+CGG + chr8_1:26145374-26145393 Msa1186960:intron 60.0%
GCGGGTCTAGCGCTAGTGGT+TGG - chr8_1:26145375-26145394 None:intergenic 65.0%
AACCGCGGGTCTAGCGCTAG+TGG - chr8_1:26145379-26145398 None:intergenic 65.0%
CGACACGACACCGGCACATG+TGG + chr8_1:26145785-26145804 Msa1186960:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 26142717 26147096 26142717 ID=Msa1186960;Name=Msa1186960
chr8_1 mRNA 26142717 26147096 26142717 ID=Msa1186960-mRNA-1;Parent=Msa1186960;Name=Msa1186960-mRNA-1;_AED=0.23;_eAED=0.23;_QI=243|1|1|1|0.83|0.71|7|385|296
chr8_1 exon 26142717 26142949 26142717 ID=Msa1186960-mRNA-1:exon:9243;Parent=Msa1186960-mRNA-1
chr8_1 exon 26143702 26144082 26143702 ID=Msa1186960-mRNA-1:exon:9244;Parent=Msa1186960-mRNA-1
chr8_1 exon 26144998 26145086 26144998 ID=Msa1186960-mRNA-1:exon:9245;Parent=Msa1186960-mRNA-1
chr8_1 exon 26145203 26145279 26145203 ID=Msa1186960-mRNA-1:exon:9246;Parent=Msa1186960-mRNA-1
chr8_1 exon 26145948 26146058 26145948 ID=Msa1186960-mRNA-1:exon:9247;Parent=Msa1186960-mRNA-1
chr8_1 exon 26146154 26146299 26146154 ID=Msa1186960-mRNA-1:exon:9248;Parent=Msa1186960-mRNA-1
chr8_1 exon 26146615 26147096 26146615 ID=Msa1186960-mRNA-1:exon:9249;Parent=Msa1186960-mRNA-1
chr8_1 five_prime_UTR 26142717 26142949 26142717 ID=Msa1186960-mRNA-1:five_prime_utr;Parent=Msa1186960-mRNA-1
chr8_1 five_prime_UTR 26143702 26143711 26143702 ID=Msa1186960-mRNA-1:five_prime_utr;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26143712 26144082 26143712 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26144998 26145086 26144998 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26145203 26145279 26145203 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26145948 26146058 26145948 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26146154 26146299 26146154 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 CDS 26146615 26146711 26146615 ID=Msa1186960-mRNA-1:cds;Parent=Msa1186960-mRNA-1
chr8_1 three_prime_UTR 26146712 26147096 26146712 ID=Msa1186960-mRNA-1:three_prime_utr;Parent=Msa1186960-mRNA-1
Gene Sequence

>Msa1186960

ATGGATTGGTACTATGGATGTGGAACGAACGATTTCGTTGTACCGGGTGATCAAGATTTAATGGCTAGGCATCCATCACCAGAAAACTGGTCAAAATGGGGAATAAATACACCTGAAGGTTACAATTCACCTAAAAATTTCATGACCATGGATTCAAATACAACAGAATTAGAATTCAATTTCAACAGTGAAAGTTTCCGTAACGGAGGCAAGTTCGAACCATCTTCCTATGATAAAGATCAATCTAGCAGTTCAAGTGTATGTGGAGGATTGACTGAGCAATCTTTTCAACAATCACGTCATCAACATCAGCAGAATCAGCTTCAAGAACTATCATCAAGTTTCGAGCAGACCACCGATGACATTTTCTTGGATTCTATACTTGAAGATTTTCCCTGTGCTGAAAACTCAAACAAGTCCTTTTACTTTTATCCTGAAAACCAATGCAGCAATACACCTGGTGGACTGCAGGAAGATATTGCAGCTTCCGAGTATCTTACATGCAACTCTAATTCTGATGATTGCTTGAACATAGAGACACTCCAAATCTTGGATCATTCTGAGCAATTCAGTGGAGATGAAGCAATGCATAAACACTCATCTATTGAAGAATCTACACTGCAGAATCTTGAGGCAATAATTTCACAGTTCAATGACAAGACTCGAATTCACTTCCGCGATGCACTTTACCGCCTTGCCAGAGATACAAAACATCAGAATGTAGTAGAGGACCTGGATGGTGATGTTAGCATGCAAGAGGCAATGCCATGGGCAGTTCACAATGAAGCCTTGAGGTCTGACGACAAGAAACCAATGGAATCAGAGACCAACAGTGTCGACAGAGCAGTTGCTAATCTCATGTTCAACGGAACCGCATATTGCGAATGCTGA

Protein sequence

>Msa1186960

MDWYYGCGTNDFVVPGDQDLMARHPSPENWSKWGINTPEGYNSPKNFMTMDSNTTELEFNFNSESFRNGGKFEPSSYDKDQSSSSSVCGGLTEQSFQQSRHQHQQNQLQELSSSFEQTTDDIFLDSILEDFPCAENSNKSFYFYPENQCSNTPGGLQEDIAASEYLTCNSNSDDCLNIETLQILDHSEQFSGDEAMHKHSSIEESTLQNLEAIISQFNDKTRIHFRDALYRLARDTKHQNVVEDLDGDVSMQEAMPWAVHNEALRSDDKKPMESETNSVDRAVANLMFNGTAYCEC*