Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1241140 | XP_003627969.2 | 96.959 | 296 | 9 | 0 | 1 | 296 | 1 | 296 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0074140 | Msa1241140 | 0.818140 | 2.289396e-52 | -8.615850e-47 |
Msa0074180 | Msa1241140 | 0.824633 | 7.260757e-54 | -8.615850e-47 |
Msa0792480 | Msa1241140 | 0.935723 | 5.410598e-97 | -8.615850e-47 |
Msa0219920 | Msa1241140 | 0.894119 | 3.327036e-75 | -8.615850e-47 |
Msa1241140 | Msa1321760 | 0.915152 | 8.262756e-85 | -8.615850e-47 |
Msa1241140 | Msa1406670 | 0.802823 | 4.673468e-49 | -8.615850e-47 |
Msa0415950 | Msa1241140 | 0.810586 | 1.070912e-50 | -8.615850e-47 |
Msa0448980 | Msa1241140 | 0.836872 | 7.253262e-57 | -8.615850e-47 |
Msa1009990 | Msa1241140 | 0.820824 | 5.592223e-53 | -8.615850e-47 |
Msa0299220 | Msa1241140 | 0.846012 | 2.837074e-59 | -8.615850e-47 |
Msa1139800 | Msa1241140 | 0.805137 | 1.543569e-49 | -8.615850e-47 |
Msa1186960 | Msa1241140 | 0.926555 | 3.993604e-91 | -8.615850e-47 |
Msa0497160 | Msa1241140 | 0.817584 | 3.056480e-52 | -8.615850e-47 |
Msa0508080 | Msa1241140 | 0.815628 | 8.387641e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1241140 | MtrunA17_Chr8g0353801 | 96.959 | 296 | 9 | 0 | 1 | 296 | 1 | 296 | 0.0 | 600 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 70 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCAGAAAACTGGTCAAAA+TGG | 0.212731 | 8_2:+24502579 | Msa1241140:CDS |
GTTTCCACCCAGCTCAATTT+TGG | 0.250647 | 8_2:+24505754 | Msa1241140:three_prime_UTR |
ACCGGGCGATCAAGATTTAA+TGG | 0.329908 | 8_2:+24502544 | Msa1241140:CDS |
TTAGGTGAATTGTAACCTTC+AGG | 0.333912 | 8_2:-24502614 | None:intergenic |
GCTCAGAATGATCCAAGATT+TGG | 0.336181 | 8_2:-24504833 | None:intergenic |
ACTGAATAATTACAGGGAAT+TGG | 0.336493 | 8_2:-24505678 | None:intergenic |
ATTCCAGACACTCCAAATCT+TGG | 0.354694 | 8_2:+24504821 | Msa1241140:intron |
GTTGAAATTGAATTCTAATT+CGG | 0.357412 | 8_2:-24502666 | None:intergenic |
GCAAAGTACTGAATAATTAC+AGG | 0.362124 | 8_2:-24505685 | None:intergenic |
TTTGGTTGTAATGTAAGTTA+TGG | 0.363543 | 8_2:+24505772 | Msa1241140:three_prime_UTR |
TTAGCCATGGATTGGTACTA+TGG | 0.366474 | 8_2:+24502497 | Msa1241140:exon |
TGCATGAACAATCTCTTAGT+TGG | 0.367739 | 8_2:-24505598 | None:intergenic |
GCTAGATTGATCTTTATCAT+AGG | 0.391039 | 8_2:-24502729 | None:intergenic |
ACCAGAAAACTGGTCAAAAT+GGG | 0.398356 | 8_2:+24502580 | Msa1241140:CDS |
GGCATCCATCACCAGAAAAC+TGG | 0.409517 | 8_2:+24502570 | Msa1241140:CDS |
TACCAGGTGTATTGCTGCAT+TGG | 0.434993 | 8_2:-24503857 | None:intergenic |
TACATAATACATATAACTTC+TGG | 0.435133 | 8_2:-24505709 | None:intergenic |
TACATTCAAACAAAATATCA+AGG | 0.459131 | 8_2:-24505871 | None:intergenic |
CATTACAACCAAAATTGAGC+TGG | 0.460144 | 8_2:-24505762 | None:intergenic |
TGAGAAATACAGAGAGAGGG+AGG | 0.471230 | 8_2:-24501612 | None:intergenic |
AAAAGAACAAAACTTGTTGA+AGG | 0.475973 | 8_2:-24501694 | None:intergenic |
CTGTTGGTCTCTGATTCCAT+TGG | 0.476213 | 8_2:-24505516 | None:intergenic |
GCCATTAAATCTTGATCGCC+CGG | 0.481344 | 8_2:-24502545 | None:intergenic |
TAGGTGAGAAATACAGAGAG+AGG | 0.487390 | 8_2:-24501616 | None:intergenic |
TATTATGTAAGTCTTGTTCA+AGG | 0.494533 | 8_2:+24505723 | Msa1241140:three_prime_UTR |
ACAGACTATTAGCCATGGAT+TGG | 0.499884 | 8_2:+24502489 | Msa1241140:intron |
AGGTGAGAAATACAGAGAGA+GGG | 0.506575 | 8_2:-24501615 | None:intergenic |
AACGAACGATTTCGTTGTAC+CGG | 0.507721 | 8_2:+24502526 | Msa1241140:CDS |
TCTTGAGGCAATAATTTCAC+AGG | 0.518119 | 8_2:+24504917 | Msa1241140:CDS |
TTCGGTTGTATCTGAATCCA+TGG | 0.525837 | 8_2:-24502648 | None:intergenic |
TGATGATTGCTTGAACATAG+AGG | 0.536604 | 8_2:+24504048 | Msa1241140:CDS |
TAAGAAGAGTTAAGAAGCAA+TGG | 0.538057 | 8_2:-24501533 | None:intergenic |
GAGAAATACAGAGAGAGGGA+GGG | 0.539189 | 8_2:-24501611 | None:intergenic |
GCATGCTAACATCACCATCC+AGG | 0.540288 | 8_2:-24505117 | None:intergenic |
TCTAGCAGTTCAAGTGTATG+TGG | 0.542953 | 8_2:+24502746 | Msa1241140:CDS |
ACAGAGAGAGGGAGGGAGAG+AGG | 0.547692 | 8_2:-24501604 | None:intergenic |
GAATTAGAATTCAATTTCAA+CGG | 0.553537 | 8_2:+24502668 | Msa1241140:CDS |
ATTACAACCAAAATTGAGCT+GGG | 0.568507 | 8_2:-24505761 | None:intergenic |
GATCATTCTGAGCAATTCAG+TGG | 0.574655 | 8_2:+24504843 | Msa1241140:CDS |
ACGAACGATTTCGTTGTACC+GGG | 0.575268 | 8_2:+24502527 | Msa1241140:CDS |
CATGCAAGAGGCAATGCCAT+GGG | 0.575721 | 8_2:+24505135 | Msa1241140:CDS |
GCTTCATTGTGAACTGCCCA+TGG | 0.576976 | 8_2:-24505151 | None:intergenic |
AACTGCTCTGTCGACACTGT+TGG | 0.577880 | 8_2:-24505532 | None:intergenic |
GCATGCAAGAGGCAATGCCA+TGG | 0.580050 | 8_2:+24505134 | Msa1241140:CDS |
AACTTGTTGAAGGATGAAAC+TGG | 0.582612 | 8_2:-24501684 | None:intergenic |
ATGGATTGGTACTATGGATG+TGG | 0.584308 | 8_2:+24502503 | Msa1241140:CDS |
AACGGTGAAAGTTTCCGCGA+TGG | 0.584616 | 8_2:+24502686 | Msa1241140:CDS |
TCAGAATGTAGTAGAGGACC+TGG | 0.590986 | 8_2:+24505099 | Msa1241140:CDS |
TGGGGAATAAATACACCTGA+AGG | 0.602852 | 8_2:+24502599 | Msa1241140:CDS |
GCGATCAAGATTTAATGGCT+AGG | 0.605112 | 8_2:+24502549 | Msa1241140:CDS |
CAAAGTACTGAATAATTACA+GGG | 0.606442 | 8_2:-24505684 | None:intergenic |
GTCTGACAACAAGAAACCAA+TGG | 0.611234 | 8_2:+24505500 | Msa1241140:CDS |
ATCTACACTGCAGAATCTTG+AGG | 0.615256 | 8_2:+24504902 | Msa1241140:CDS |
AAAACATCAGAATGTAGTAG+AGG | 0.618804 | 8_2:+24505093 | Msa1241140:CDS |
AGAGTTGCATGTAAGATACT+CGG | 0.620268 | 8_2:-24504020 | None:intergenic |
GGATCAGCATTCACAATATG+CGG | 0.622909 | 8_2:-24505577 | None:intergenic |
AACCAATGCAGCAATACACC+TGG | 0.625548 | 8_2:+24503855 | Msa1241140:CDS |
ACATCCATAGTACCAATCCA+TGG | 0.634261 | 8_2:-24502501 | None:intergenic |
CCAGAAAACTGGTCAAAATG+GGG | 0.639085 | 8_2:+24502581 | Msa1241140:CDS |
TGTGTACAAGAAAATGTCAT+CGG | 0.643710 | 8_2:-24502858 | None:intergenic |
GTTGCAAATCTCATGTTCAA+CGG | 0.646462 | 8_2:+24505552 | Msa1241140:CDS |
GGTCAGGCAATGCAATTCTG+AGG | 0.656482 | 8_2:+24505627 | Msa1241140:three_prime_UTR |
AATGTAGTAGAGGACCTGGA+TGG | 0.664719 | 8_2:+24505103 | Msa1241140:CDS |
AGCAGTTCAAGTGTATGTGG+AGG | 0.666769 | 8_2:+24502749 | Msa1241140:CDS |
CAGTTCACAATGAAGCCTTG+AGG | 0.672028 | 8_2:+24505158 | Msa1241140:CDS |
TGGTGATGTTAGCATGCAAG+AGG | 0.691812 | 8_2:+24505123 | Msa1241140:CDS |
GTACAAGAAAATGTCATCGG+TGG | 0.696106 | 8_2:-24502855 | None:intergenic |
ACAACCAAAATTGAGCTGGG+TGG | 0.710912 | 8_2:-24505758 | None:intergenic |
ATTCAAACTTGACTCCATCG+CGG | 0.769037 | 8_2:-24502700 | None:intergenic |
CAAGGCGGTAAAGTGCATCG+CGG | 0.772895 | 8_2:-24505060 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATGAAATTCTTTTTTAAT+GGG | - | chr8_2:24503197-24503216 | None:intergenic | 10.0% |
!!! | AAAATGAAATTCTTTTTTAA+TGG | - | chr8_2:24503198-24503217 | None:intergenic | 10.0% |
!!! | ATATACTACTTTTTTACTTT+TGG | + | chr8_2:24503229-24503248 | Msa1241140:intron | 15.0% |
!! | TAAAAAGTAGTATATTTGAA+AGG | - | chr8_2:24503308-24503327 | None:intergenic | 15.0% |
!!! | AATATACTACTTTTTACATT+TGG | + | chr8_2:24503312-24503331 | Msa1241140:intron | 15.0% |
!!! | TTCAAAATGAACAAATTTTA+CGG | - | chr8_2:24503360-24503379 | None:intergenic | 15.0% |
!!! | TATAGCAAATGTTTTTGTTT+TGG | - | chr8_2:24501580-24501599 | None:intergenic | 20.0% |
!!! | GGTGTTGATTATTTTTATAA+GGG | + | chr8_2:24501929-24501948 | Msa1241140:intron | 20.0% |
!!! | TATTTTTATAAGGGTTGAAA+AGG | + | chr8_2:24501938-24501957 | Msa1241140:intron | 20.0% |
!!! | ATTTTTATAAGGGTTGAAAA+GGG | + | chr8_2:24501939-24501958 | Msa1241140:intron | 20.0% |
!! | ATACAAAAAAGTAAGACTAA+TGG | - | chr8_2:24501980-24501999 | None:intergenic | 20.0% |
!! | AATTAAGTGTTCATTAATTG+AGG | + | chr8_2:24502289-24502308 | Msa1241140:intron | 20.0% |
!! | GTTGAAATTGAATTCTAATT+CGG | - | chr8_2:24502669-24502688 | None:intergenic | 20.0% |
!! | GAATTAGAATTCAATTTCAA+CGG | + | chr8_2:24502668-24502687 | Msa1241140:CDS | 20.0% |
!! | AAGATAAATATGGTGAAATT+CGG | - | chr8_2:24503036-24503055 | None:intergenic | 20.0% |
!! | ACCATATTTATCTTTATCAT+TGG | + | chr8_2:24503042-24503061 | Msa1241140:intron | 20.0% |
!! | TCCAATGATAAAGATAAATA+TGG | - | chr8_2:24503046-24503065 | None:intergenic | 20.0% |
!!! | TCGAACTATATTTTTTTACA+GGG | - | chr8_2:24503284-24503303 | None:intergenic | 20.0% |
!!! | ATCGAACTATATTTTTTTAC+AGG | - | chr8_2:24503285-24503304 | None:intergenic | 20.0% |
!!! | TCAAAACGATATTTTTTTAC+AGG | + | chr8_2:24503539-24503558 | Msa1241140:intron | 20.0% |
!!! | CAAAACGATATTTTTTTACA+GGG | + | chr8_2:24503540-24503559 | Msa1241140:intron | 20.0% |
!! | ATTAAAAGAAAAAGGAGAAA+GGG | - | chr8_2:24504553-24504572 | None:intergenic | 20.0% |
!! | AATTAAAAGAAAAAGGAGAA+AGG | - | chr8_2:24504554-24504573 | None:intergenic | 20.0% |
!!! | TTTCTCCTTTTTCTTTTAAT+TGG | + | chr8_2:24504553-24504572 | Msa1241140:intron | 20.0% |
!! | AAAGTCCAATTAAAAGAAAA+AGG | - | chr8_2:24504561-24504580 | None:intergenic | 20.0% |
!!! | TCAAACACATAATTTAAGTT+TGG | - | chr8_2:24505346-24505365 | None:intergenic | 20.0% |
!! | TACATAATACATATAACTTC+TGG | - | chr8_2:24505712-24505731 | None:intergenic | 20.0% |
!! | TACATTCAAACAAAATATCA+AGG | - | chr8_2:24505874-24505893 | None:intergenic | 20.0% |
!!! | TGTTATATGAGTTTTGTGAT+AGG | - | chr8_2:24501638-24501657 | None:intergenic | 25.0% |
!!! | AAAAGAACAAAACTTGTTGA+AGG | - | chr8_2:24501697-24501716 | None:intergenic | 25.0% |
!!! | TCCTTATTTTTTGCTGTTTT+TGG | + | chr8_2:24501762-24501781 | Msa1241140:intron | 25.0% |
! | TCCAAAAACAGCAAAAAATA+AGG | - | chr8_2:24501766-24501785 | None:intergenic | 25.0% |
!!! | TGTGGTTTTTTTGTTTTTGA+TGG | + | chr8_2:24501872-24501891 | Msa1241140:intron | 25.0% |
!!! | GTTTTTTTGTTTTTGATGGT+TGG | + | chr8_2:24501876-24501895 | Msa1241140:intron | 25.0% |
!!! | ATTTTAAAGCTTAACTGAAG+TGG | + | chr8_2:24501907-24501926 | Msa1241140:intron | 25.0% |
!!! | TTTTAAAGCTTAACTGAAGT+GGG | + | chr8_2:24501908-24501927 | Msa1241140:intron | 25.0% |
!!! | GGGTGTTGATTATTTTTATA+AGG | + | chr8_2:24501928-24501947 | Msa1241140:intron | 25.0% |
! | AAGATTTGGAAATAACTCTT+TGG | - | chr8_2:24502036-24502055 | None:intergenic | 25.0% |
! | ACTTCAAAAAACTGAAGATT+TGG | - | chr8_2:24502050-24502069 | None:intergenic | 25.0% |
!!! | AATCTTCAGTTTTTTGAAGT+TGG | + | chr8_2:24502050-24502069 | Msa1241140:intron | 25.0% |
!!! | TTTTTTGAAGTTGGCTTTTA+TGG | + | chr8_2:24502059-24502078 | Msa1241140:intron | 25.0% |
! | TGCTAAAAACTTGAATCTAT+TGG | + | chr8_2:24502101-24502120 | Msa1241140:intron | 25.0% |
! | GTTGTTAAATAGTGTCTATA+TGG | + | chr8_2:24502180-24502199 | Msa1241140:intron | 25.0% |
! | AATGAACACTTAATTGAACA+TGG | - | chr8_2:24502284-24502303 | None:intergenic | 25.0% |
! | ATAGTTTATACAAGGAACAT+AGG | + | chr8_2:24502348-24502367 | Msa1241140:intron | 25.0% |
! | CATGATGATTATTATCATAC+AGG | - | chr8_2:24502921-24502940 | None:intergenic | 25.0% |
!! | TTGAGGTTTACATATGTTTT+TGG | + | chr8_2:24503139-24503158 | Msa1241140:intron | 25.0% |
! | CAAAAAGTGGTATATTTACA+GGG | - | chr8_2:24503166-24503185 | None:intergenic | 25.0% |
! | AAAAAAGTAGTATATTTGCG+AGG | - | chr8_2:24503224-24503243 | None:intergenic | 25.0% |
!! | TATACTACACCTTTTACTTT+AGG | - | chr8_2:24503508-24503527 | None:intergenic | 25.0% |
!! | AAAGGTGTAGTATATTTGTA+AGG | + | chr8_2:24503514-24503533 | Msa1241140:intron | 25.0% |
! | TTGAATTAATTTCATGCCTA+TGG | - | chr8_2:24503713-24503732 | None:intergenic | 25.0% |
! | GATATGACTATGTTATCTTA+CGG | + | chr8_2:24503740-24503759 | Msa1241140:intron | 25.0% |
!!! | GTTTTCAGGATAAAAGTAAA+AGG | - | chr8_2:24503838-24503857 | None:intergenic | 25.0% |
! | CAAAAGTTCTTAAGACTATA+TGG | - | chr8_2:24504242-24504261 | None:intergenic | 25.0% |
!! | TATTTTGCAAAACATGCAAA+TGG | + | chr8_2:24504740-24504759 | Msa1241140:intron | 25.0% |
! | AATCTAAATCATATACCTCA+AGG | - | chr8_2:24505176-24505195 | None:intergenic | 25.0% |
!! | AGAAAATAGAAGTGTATGTT+TGG | - | chr8_2:24505319-24505338 | None:intergenic | 25.0% |
! | TTTACAAAATCAAGATCATC+AGG | - | chr8_2:24505392-24505411 | None:intergenic | 25.0% |
!!! | CAAAGTACTGAATAATTACA+GGG | - | chr8_2:24505687-24505706 | None:intergenic | 25.0% |
!!! | TATTATGTAAGTCTTGTTCA+AGG | + | chr8_2:24505723-24505742 | Msa1241140:three_prime_UTR | 25.0% |
! | TTTGGTTGTAATGTAAGTTA+TGG | + | chr8_2:24505772-24505791 | Msa1241140:three_prime_UTR | 25.0% |
!! | ATGCTAGAGTAAGAAATTTT+AGG | + | chr8_2:24505807-24505826 | Msa1241140:three_prime_UTR | 25.0% |
!!! | GAGTTTATAGACCATTTTTT+TGG | + | chr8_2:24505901-24505920 | Msa1241140:three_prime_UTR | 25.0% |
TAAGAAGAGTTAAGAAGCAA+TGG | - | chr8_2:24501536-24501555 | None:intergenic | 30.0% | |
!!! | CTGTTTTTGGAGTGTTTTTA+TGG | + | chr8_2:24501775-24501794 | Msa1241140:intron | 30.0% |
!! | GTTTTGATGTGAAATATGCA+TGG | + | chr8_2:24501814-24501833 | Msa1241140:intron | 30.0% |
TGTATGAAGTTTCCTATGAT+TGG | + | chr8_2:24501995-24502014 | Msa1241140:intron | 30.0% | |
!! | GTTTCCTATGATTGGTTTAA+TGG | + | chr8_2:24502003-24502022 | Msa1241140:intron | 30.0% |
TGAACCATTAAACCAATCAT+AGG | - | chr8_2:24502010-24502029 | None:intergenic | 30.0% | |
AGCATAAACTTGAAGAAACT+AGG | - | chr8_2:24502085-24502104 | None:intergenic | 30.0% | |
TCATTAATTGAGGATCTAGA+AGG | + | chr8_2:24502299-24502318 | Msa1241140:intron | 30.0% | |
GATCCAACATAGTTTATACA+AGG | + | chr8_2:24502340-24502359 | Msa1241140:intron | 30.0% | |
GTTCCTTGTATAAACTATGT+TGG | - | chr8_2:24502346-24502365 | None:intergenic | 30.0% | |
CAAGATCAGCATATAGAAAA+TGG | - | chr8_2:24502452-24502471 | None:intergenic | 30.0% | |
ACCTAAAAATTTCATGACCA+TGG | + | chr8_2:24502631-24502650 | Msa1241140:CDS | 30.0% | |
! | TCCATGGTCATGAAATTTTT+AGG | - | chr8_2:24502635-24502654 | None:intergenic | 30.0% |
GCTAGATTGATCTTTATCAT+AGG | - | chr8_2:24502732-24502751 | None:intergenic | 30.0% | |
TGTGTACAAGAAAATGTCAT+CGG | - | chr8_2:24502861-24502880 | None:intergenic | 30.0% | |
CCAAAAAGTGGTATATTTAC+AGG | - | chr8_2:24503167-24503186 | None:intergenic | 30.0% | |
!! | CCTGTAAATATACCACTTTT+TGG | + | chr8_2:24503164-24503183 | Msa1241140:intron | 30.0% |
AGTCCTTATGAAACAACTAT+TGG | + | chr8_2:24503415-24503434 | Msa1241140:intron | 30.0% | |
GTCCTTATGAAACAACTATT+GGG | + | chr8_2:24503416-24503435 | Msa1241140:intron | 30.0% | |
TCCTTATGAAACAACTATTG+GGG | + | chr8_2:24503417-24503436 | Msa1241140:intron | 30.0% | |
TATTGCACAGACTAATTCAA+AGG | + | chr8_2:24503463-24503482 | Msa1241140:intron | 30.0% | |
!!! | AGGGATTTTAAAGCAAAAAG+TGG | + | chr8_2:24503559-24503578 | Msa1241140:intron | 30.0% |
GTGTAAAAAGAGTAATTACC+AGG | - | chr8_2:24503876-24503895 | None:intergenic | 30.0% | |
CAATACCATAGAAATTGTTC+AGG | - | chr8_2:24503927-24503946 | None:intergenic | 30.0% | |
!! | TGCATTCTTTTATTTCCATC+AGG | + | chr8_2:24503971-24503990 | Msa1241140:intron | 30.0% |
TTACGATTAAGAGTTGAGTT+TGG | + | chr8_2:24504109-24504128 | Msa1241140:intron | 30.0% | |
AAGTTCTTAAGACTATATGG+TGG | - | chr8_2:24504239-24504258 | None:intergenic | 30.0% | |
AAAAACATCATTGCAAAGCA+TGG | - | chr8_2:24504348-24504367 | None:intergenic | 30.0% | |
ATTAAGCTGTTTATCCAATC+AGG | + | chr8_2:24504449-24504468 | Msa1241140:intron | 30.0% | |
TTAAGCTGTTTATCCAATCA+GGG | + | chr8_2:24504450-24504469 | Msa1241140:intron | 30.0% | |
!!! | TTAAGAAGCTTTTGAGTTTG+AGG | - | chr8_2:24504476-24504495 | None:intergenic | 30.0% |
AGAAAAGGTCTCAAAAACAA+GGG | - | chr8_2:24504507-24504526 | None:intergenic | 30.0% | |
TTGAATGTAACCAAATGTGT+CGG | - | chr8_2:24504618-24504637 | None:intergenic | 30.0% | |
AGATGTTGCATTACACTATA+AGG | - | chr8_2:24504779-24504798 | None:intergenic | 30.0% | |
TGAACTAGTTAAGAGAGAAA+GGG | - | chr8_2:24505018-24505037 | None:intergenic | 30.0% | |
TTGAACTAGTTAAGAGAGAA+AGG | - | chr8_2:24505019-24505038 | None:intergenic | 30.0% | |
! | ATTCTGATGTTTTGTATCTC+TGG | - | chr8_2:24505086-24505105 | None:intergenic | 30.0% |
AAAACATCAGAATGTAGTAG+AGG | + | chr8_2:24505093-24505112 | Msa1241140:CDS | 30.0% | |
! | CAAATGCTACCTTTGTTTAT+AGG | + | chr8_2:24505478-24505497 | Msa1241140:intron | 30.0% |
GAGATTGTTCATGCAAAAAT+TGG | + | chr8_2:24505606-24505625 | Msa1241140:three_prime_UTR | 30.0% | |
ACTGAATAATTACAGGGAAT+TGG | - | chr8_2:24505681-24505700 | None:intergenic | 30.0% | |
!! | GCAAAGTACTGAATAATTAC+AGG | - | chr8_2:24505688-24505707 | None:intergenic | 30.0% |
ATTACAACCAAAATTGAGCT+GGG | - | chr8_2:24505764-24505783 | None:intergenic | 30.0% | |
CACTCATAGAAGAAAAAACT+AGG | - | chr8_2:24505844-24505863 | None:intergenic | 30.0% | |
!!! | ACCATTTTTTTGGCAAACTT+GGG | + | chr8_2:24505911-24505930 | Msa1241140:three_prime_UTR | 30.0% |
!! | AACTTGTTGAAGGATGAAAC+TGG | - | chr8_2:24501687-24501706 | None:intergenic | 35.0% |
TATAAGGGTTGAAAAGGGTT+AGG | + | chr8_2:24501944-24501963 | Msa1241140:intron | 35.0% | |
! | CTTTTACAGACTATTAGCCA+TGG | + | chr8_2:24502484-24502503 | Msa1241140:intron | 35.0% |
ACCAGAAAACTGGTCAAAAT+GGG | + | chr8_2:24502580-24502599 | Msa1241140:CDS | 35.0% | |
TTAGGTGAATTGTAACCTTC+AGG | - | chr8_2:24502617-24502636 | None:intergenic | 35.0% | |
!! | ACTTCTGGGATTAATATGCT+TGG | + | chr8_2:24502887-24502906 | Msa1241140:intron | 35.0% |
! | ATAGAGCATTCAATTTCCAC+TGG | - | chr8_2:24502999-24503018 | None:intergenic | 35.0% |
TCATTGGAGCCAAAACAAAA+TGG | + | chr8_2:24503058-24503077 | Msa1241140:intron | 35.0% | |
TTCATGCTTATAGAGTTGTG+CGG | - | chr8_2:24503086-24503105 | None:intergenic | 35.0% | |
AAGCATGAACCTGTTATAGT+AGG | + | chr8_2:24503097-24503116 | Msa1241140:intron | 35.0% | |
AGCATGAACCTGTTATAGTA+GGG | + | chr8_2:24503098-24503117 | Msa1241140:intron | 35.0% | |
AACCTGTTATAGTAGGGTAA+GGG | + | chr8_2:24503104-24503123 | Msa1241140:intron | 35.0% | |
! | AAGGGCTACTATTTTCTTTG+AGG | + | chr8_2:24503122-24503141 | Msa1241140:intron | 35.0% |
ATGGGACTAATACCAAAAAG+TGG | - | chr8_2:24503179-24503198 | None:intergenic | 35.0% | |
!!! | ACTTTTGGTTCTTGCTGTTT+TGG | + | chr8_2:24503244-24503263 | Msa1241140:intron | 35.0% |
!! | TACATTTGGTCTTGCTGTTT+CGG | + | chr8_2:24503326-24503345 | Msa1241140:intron | 35.0% |
CCTTATGAAACAACTATTGG+GGG | + | chr8_2:24503418-24503437 | Msa1241140:intron | 35.0% | |
CTTATGAAACAACTATTGGG+GGG | + | chr8_2:24503419-24503438 | Msa1241140:intron | 35.0% | |
CAACAAGGACCTAAAGTAAA+AGG | + | chr8_2:24503496-24503515 | Msa1241140:intron | 35.0% | |
GCAAAAAGTGGTAGATTTGT+TGG | + | chr8_2:24503571-24503590 | Msa1241140:intron | 35.0% | |
!! | AAGTGGTAGATTTGTTGGTA+CGG | + | chr8_2:24503576-24503595 | Msa1241140:intron | 35.0% |
CAGAGACATTCAATTCTTAC+TGG | + | chr8_2:24503684-24503703 | Msa1241140:intron | 35.0% | |
TCACATGTTTCACATAATGC+AGG | + | chr8_2:24503766-24503785 | Msa1241140:intron | 35.0% | |
CACATGTTTCACATAATGCA+GGG | + | chr8_2:24503767-24503786 | Msa1241140:intron | 35.0% | |
!! | TTGTTTGAGTTTTCAGCACA+GGG | - | chr8_2:24503813-24503832 | None:intergenic | 35.0% |
AGTTGCCTGAACAATTTCTA+TGG | + | chr8_2:24503919-24503938 | Msa1241140:intron | 35.0% | |
AGAGTTGCATGTAAGATACT+CGG | - | chr8_2:24504023-24504042 | None:intergenic | 35.0% | |
TGATGATTGCTTGAACATAG+AGG | + | chr8_2:24504048-24504067 | Msa1241140:CDS | 35.0% | |
! | AGATTCATGTTTTACCACCA+CGG | - | chr8_2:24504186-24504205 | None:intergenic | 35.0% |
!! | GACACATAGACAAGAGTATT+TGG | - | chr8_2:24504274-24504293 | None:intergenic | 35.0% |
! | GTGTATAACAAATGACTTGC+AGG | - | chr8_2:24504296-24504315 | None:intergenic | 35.0% |
CAGCATGAAATGACTTATAC+TGG | - | chr8_2:24504318-24504337 | None:intergenic | 35.0% | |
CAGAAAAGGTCTCAAAAACA+AGG | - | chr8_2:24504508-24504527 | None:intergenic | 35.0% | |
TCTTGAGGCAATAATTTCAC+AGG | + | chr8_2:24504917-24504936 | Msa1241140:CDS | 35.0% | |
GAAGTGTATGTTTGGTTGAA+CGG | - | chr8_2:24505311-24505330 | None:intergenic | 35.0% | |
GTTGTCAGACCTATAAACAA+AGG | - | chr8_2:24505490-24505509 | None:intergenic | 35.0% | |
GTTGCAAATCTCATGTTCAA+CGG | + | chr8_2:24505552-24505571 | Msa1241140:CDS | 35.0% | |
TGCATGAACAATCTCTTAGT+TGG | - | chr8_2:24505601-24505620 | None:intergenic | 35.0% | |
TGTTCATGCAAAAATTGGTC+AGG | + | chr8_2:24505611-24505630 | Msa1241140:three_prime_UTR | 35.0% | |
CATTACAACCAAAATTGAGC+TGG | - | chr8_2:24505765-24505784 | None:intergenic | 35.0% | |
!!! | GACCATTTTTTTGGCAAACT+TGG | + | chr8_2:24505910-24505929 | Msa1241140:three_prime_UTR | 35.0% |
ACCCAAGTTTGCCAAAAAAA+TGG | - | chr8_2:24505915-24505934 | None:intergenic | 35.0% | |
!!! | TTTTTTGGCAAACTTGGGTT+AGG | + | chr8_2:24505916-24505935 | Msa1241140:three_prime_UTR | 35.0% |
! | GGTTAGGTCATAATTTTGTG+TGG | + | chr8_2:24505932-24505951 | Msa1241140:three_prime_UTR | 35.0% |
AGGTGAGAAATACAGAGAGA+GGG | - | chr8_2:24501618-24501637 | None:intergenic | 40.0% | |
TAGGTGAGAAATACAGAGAG+AGG | - | chr8_2:24501619-24501638 | None:intergenic | 40.0% | |
TTGAAAAGGGTTAGGAGCAA+TGG | + | chr8_2:24501952-24501971 | Msa1241140:intron | 40.0% | |
ACGCAGATCGAAGAAAATAG+TGG | - | chr8_2:24502227-24502246 | None:intergenic | 40.0% | |
ACAGACTATTAGCCATGGAT+TGG | + | chr8_2:24502489-24502508 | Msa1241140:intron | 40.0% | |
!! | TTAGCCATGGATTGGTACTA+TGG | + | chr8_2:24502497-24502516 | Msa1241140:exon | 40.0% |
ACATCCATAGTACCAATCCA+TGG | - | chr8_2:24502504-24502523 | None:intergenic | 40.0% | |
!! | ATGGATTGGTACTATGGATG+TGG | + | chr8_2:24502503-24502522 | Msa1241140:CDS | 40.0% |
AACGAACGATTTCGTTGTAC+CGG | + | chr8_2:24502526-24502545 | Msa1241140:CDS | 40.0% | |
GCGATCAAGATTTAATGGCT+AGG | + | chr8_2:24502549-24502568 | Msa1241140:CDS | 40.0% | |
!! | TTTGACCAGTTTTCTGGTGA+TGG | - | chr8_2:24502578-24502597 | None:intergenic | 40.0% |
CACCAGAAAACTGGTCAAAA+TGG | + | chr8_2:24502579-24502598 | Msa1241140:CDS | 40.0% | |
CCAGAAAACTGGTCAAAATG+GGG | + | chr8_2:24502581-24502600 | Msa1241140:CDS | 40.0% | |
TGGGGAATAAATACACCTGA+AGG | + | chr8_2:24502599-24502618 | Msa1241140:CDS | 40.0% | |
TTCGGTTGTATCTGAATCCA+TGG | - | chr8_2:24502651-24502670 | None:intergenic | 40.0% | |
ATTCAAACTTGACTCCATCG+CGG | - | chr8_2:24502703-24502722 | None:intergenic | 40.0% | |
TCTAGCAGTTCAAGTGTATG+TGG | + | chr8_2:24502746-24502765 | Msa1241140:CDS | 40.0% | |
GTACAAGAAAATGTCATCGG+TGG | - | chr8_2:24502858-24502877 | None:intergenic | 40.0% | |
TTGTACACAAGCGTAACTTC+TGG | + | chr8_2:24502872-24502891 | Msa1241140:intron | 40.0% | |
TGTACACAAGCGTAACTTCT+GGG | + | chr8_2:24502873-24502892 | Msa1241140:intron | 40.0% | |
ATGCAAAGCATACTCATGCT+AGG | - | chr8_2:24502965-24502984 | None:intergenic | 40.0% | |
!! | TGCATTTTAGCAAAGTCCAG+TGG | + | chr8_2:24502980-24502999 | Msa1241140:intron | 40.0% |
!! | TGTGCGGAACCATTTTGTTT+TGG | - | chr8_2:24503070-24503089 | None:intergenic | 40.0% |
GAACCTGTTATAGTAGGGTA+AGG | + | chr8_2:24503103-24503122 | Msa1241140:intron | 40.0% | |
! | CCCCCAATAGTTGTTTCATA+AGG | - | chr8_2:24503421-24503440 | None:intergenic | 40.0% |
AAAGGTGACCAAAGACAACA+AGG | + | chr8_2:24503481-24503500 | Msa1241140:intron | 40.0% | |
! | CTTTAGGTCCTTGTTGTCTT+TGG | - | chr8_2:24503492-24503511 | None:intergenic | 40.0% |
! | CAATTCTTACTGGCTACCAT+AGG | + | chr8_2:24503694-24503713 | Msa1241140:intron | 40.0% |
!! | CTTGTTTGAGTTTTCAGCAC+AGG | - | chr8_2:24503814-24503833 | None:intergenic | 40.0% |
!!! | GTATTGCTGCATTGGTTTTC+AGG | - | chr8_2:24503852-24503871 | None:intergenic | 40.0% |
AGAGTTGAGTTTGGTATCTC+AGG | + | chr8_2:24504118-24504137 | Msa1241140:intron | 40.0% | |
GAGTTGAGTTTGGTATCTCA+GGG | + | chr8_2:24504119-24504138 | Msa1241140:intron | 40.0% | |
! | GATTCATGTTTTACCACCAC+GGG | - | chr8_2:24504185-24504204 | None:intergenic | 40.0% |
CATCACAAGTTCACAACACA+AGG | + | chr8_2:24504376-24504395 | Msa1241140:intron | 40.0% | |
!! | GATGAAGCATTGACATAGAC+AGG | - | chr8_2:24504705-24504724 | None:intergenic | 40.0% |
ATTCCAGACACTCCAAATCT+TGG | + | chr8_2:24504821-24504840 | Msa1241140:intron | 40.0% | |
GCTCAGAATGATCCAAGATT+TGG | - | chr8_2:24504836-24504855 | None:intergenic | 40.0% | |
GATCATTCTGAGCAATTCAG+TGG | + | chr8_2:24504843-24504862 | Msa1241140:CDS | 40.0% | |
ATCTACACTGCAGAATCTTG+AGG | + | chr8_2:24504902-24504921 | Msa1241140:CDS | 40.0% | |
GCACATTAAATCAGATGCGA+AGG | - | chr8_2:24504967-24504986 | None:intergenic | 40.0% | |
! | GATGTTTTGTATCTCTGGCA+AGG | - | chr8_2:24505081-24505100 | None:intergenic | 40.0% |
TCGATTGACAGTGAGATTGT+CGG | + | chr8_2:24505220-24505239 | Msa1241140:intron | 40.0% | |
GTCTGACAACAAGAAACCAA+TGG | + | chr8_2:24505500-24505519 | Msa1241140:CDS | 40.0% | |
GGATCAGCATTCACAATATG+CGG | - | chr8_2:24505580-24505599 | None:intergenic | 40.0% | |
GAGAAATACAGAGAGAGGGA+GGG | - | chr8_2:24501614-24501633 | None:intergenic | 45.0% | |
TGAGAAATACAGAGAGAGGG+AGG | - | chr8_2:24501615-24501634 | None:intergenic | 45.0% | |
ACGAACGATTTCGTTGTACC+GGG | + | chr8_2:24502527-24502546 | Msa1241140:CDS | 45.0% | |
ACCGGGCGATCAAGATTTAA+TGG | + | chr8_2:24502544-24502563 | Msa1241140:CDS | 45.0% | |
GCCATTAAATCTTGATCGCC+CGG | - | chr8_2:24502548-24502567 | None:intergenic | 45.0% | |
!! | CCCCATTTTGACCAGTTTTC+TGG | - | chr8_2:24502584-24502603 | None:intergenic | 45.0% |
AGCAGTTCAAGTGTATGTGG+AGG | + | chr8_2:24502749-24502768 | Msa1241140:CDS | 45.0% | |
AGCCCTTACCCTACTATAAC+AGG | - | chr8_2:24503109-24503128 | None:intergenic | 45.0% | |
AACCAATGCAGCAATACACC+TGG | + | chr8_2:24503855-24503874 | Msa1241140:CDS | 45.0% | |
TACCAGGTGTATTGCTGCAT+TGG | - | chr8_2:24503860-24503879 | None:intergenic | 45.0% | |
TCATTCTGCAGTTCACCTGA+TGG | - | chr8_2:24503989-24504008 | None:intergenic | 45.0% | |
! | TTTGAGTTTGAGGCCCTGAT+TGG | - | chr8_2:24504466-24504485 | None:intergenic | 45.0% |
GGGGAACAGTTACACAGAAA+AGG | - | chr8_2:24504522-24504541 | None:intergenic | 45.0% | |
AAGGAGAAAGGGAGTAGCAT+GGG | - | chr8_2:24504542-24504561 | None:intergenic | 45.0% | |
AAAGGAGAAAGGGAGTAGCA+TGG | - | chr8_2:24504543-24504562 | None:intergenic | 45.0% | |
ATGTCGTGTCAGTGTGATAC+GGG | - | chr8_2:24504591-24504610 | None:intergenic | 45.0% | |
CATGTCGTGTCAGTGTGATA+CGG | - | chr8_2:24504592-24504611 | None:intergenic | 45.0% | |
GTCAATGTCAGTGTCATCTC+TGG | + | chr8_2:24504675-24504694 | Msa1241140:intron | 45.0% | |
! | GATCCAAGATTTGGAGTGTC+TGG | - | chr8_2:24504827-24504846 | None:intergenic | 45.0% |
! | GTTTTGTATCTCTGGCAAGG+CGG | - | chr8_2:24505078-24505097 | None:intergenic | 45.0% |
TCAGAATGTAGTAGAGGACC+TGG | + | chr8_2:24505099-24505118 | Msa1241140:CDS | 45.0% | |
AATGTAGTAGAGGACCTGGA+TGG | + | chr8_2:24505103-24505122 | Msa1241140:CDS | 45.0% | |
! | TGGTGATGTTAGCATGCAAG+AGG | + | chr8_2:24505123-24505142 | Msa1241140:CDS | 45.0% |
CAGTTCACAATGAAGCCTTG+AGG | + | chr8_2:24505158-24505177 | Msa1241140:CDS | 45.0% | |
CAGTGAGATTGTCGGAATCA+CGG | + | chr8_2:24505228-24505247 | Msa1241140:intron | 45.0% | |
CGGTGAGTTTGGCAAAATCA+CGG | - | chr8_2:24505291-24505310 | None:intergenic | 45.0% | |
GTTTGGTTGAACGGTGAGTT+TGG | - | chr8_2:24505302-24505321 | None:intergenic | 45.0% | |
! | CTGTTGGTCTCTGATTCCAT+TGG | - | chr8_2:24505519-24505538 | None:intergenic | 45.0% |
! | GTTTCCACCCAGCTCAATTT+TGG | + | chr8_2:24505754-24505773 | Msa1241140:three_prime_UTR | 45.0% |
ACAACCAAAATTGAGCTGGG+TGG | - | chr8_2:24505761-24505780 | None:intergenic | 45.0% | |
!!! | AAAATTTTAATTTTTTTTTG+TGG | + | chr8_2:24501854-24501873 | Msa1241140:intron | 5.0% |
GGCATCCATCACCAGAAAAC+TGG | + | chr8_2:24502570-24502589 | Msa1241140:CDS | 50.0% | |
AACGGTGAAAGTTTCCGCGA+TGG | + | chr8_2:24502686-24502705 | Msa1241140:CDS | 50.0% | |
AGGAGAAAGGGAGTAGCATG+GGG | - | chr8_2:24504541-24504560 | None:intergenic | 50.0% | |
CGACATGACACCGACACATT+TGG | + | chr8_2:24504605-24504624 | Msa1241140:intron | 50.0% | |
GCATGCTAACATCACCATCC+AGG | - | chr8_2:24505120-24505139 | None:intergenic | 50.0% | |
CATGCAAGAGGCAATGCCAT+GGG | + | chr8_2:24505135-24505154 | Msa1241140:CDS | 50.0% | |
GCTTCATTGTGAACTGCCCA+TGG | - | chr8_2:24505154-24505173 | None:intergenic | 50.0% | |
GGAATCACGGTCAGACACTT+TGG | + | chr8_2:24505241-24505260 | Msa1241140:intron | 50.0% | |
AACTGCTCTGTCGACACTGT+TGG | - | chr8_2:24505535-24505554 | None:intergenic | 50.0% | |
GGTCAGGCAATGCAATTCTG+AGG | + | chr8_2:24505627-24505646 | Msa1241140:three_prime_UTR | 50.0% | |
CAAGGCGGTAAAGTGCATCG+CGG | - | chr8_2:24505063-24505082 | None:intergenic | 55.0% | |
GCATGCAAGAGGCAATGCCA+TGG | + | chr8_2:24505134-24505153 | Msa1241140:CDS | 55.0% | |
ACAGAGAGAGGGAGGGAGAG+AGG | - | chr8_2:24501607-24501626 | None:intergenic | 60.0% | |
ACGGGTCTAGCGCTAGTGGT+TGG | - | chr8_2:24504167-24504186 | None:intergenic | 60.0% | |
AACCACTAGCGCTAGACCCG+TGG | + | chr8_2:24504166-24504185 | Msa1241140:intron | 60.0% | |
CACCACGGGTCTAGCGCTAG+TGG | - | chr8_2:24504171-24504190 | None:intergenic | 65.0% | |
CACTAGCGCTAGACCCGTGG+TGG | + | chr8_2:24504169-24504188 | Msa1241140:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 24501526 | 24505981 | 24501526 | ID=Msa1241140;Name=Msa1241140 |
chr8_2 | mRNA | 24501526 | 24505981 | 24501526 | ID=Msa1241140-mRNA-1;Parent=Msa1241140;Name=Msa1241140-mRNA-1;_AED=0.23;_eAED=0.23;_QI=236|1|1|1|0.83|0.71|7|385|296 |
chr8_2 | exon | 24501526 | 24501751 | 24501526 | ID=Msa1241140-mRNA-1:exon:8669;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24502493 | 24502873 | 24502493 | ID=Msa1241140-mRNA-1:exon:8670;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24503788 | 24503876 | 24503788 | ID=Msa1241140-mRNA-1:exon:8671;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24503993 | 24504069 | 24503993 | ID=Msa1241140-mRNA-1:exon:8672;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24504828 | 24504938 | 24504828 | ID=Msa1241140-mRNA-1:exon:8673;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24505034 | 24505179 | 24505034 | ID=Msa1241140-mRNA-1:exon:8674;Parent=Msa1241140-mRNA-1 |
chr8_2 | exon | 24505500 | 24505981 | 24505500 | ID=Msa1241140-mRNA-1:exon:8675;Parent=Msa1241140-mRNA-1 |
chr8_2 | five_prime_UTR | 24501526 | 24501751 | 24501526 | ID=Msa1241140-mRNA-1:five_prime_utr;Parent=Msa1241140-mRNA-1 |
chr8_2 | five_prime_UTR | 24502493 | 24502502 | 24502493 | ID=Msa1241140-mRNA-1:five_prime_utr;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24502503 | 24502873 | 24502503 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24503788 | 24503876 | 24503788 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24503993 | 24504069 | 24503993 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24504828 | 24504938 | 24504828 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24505034 | 24505179 | 24505034 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | CDS | 24505500 | 24505596 | 24505500 | ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1 |
chr8_2 | three_prime_UTR | 24505597 | 24505981 | 24505597 | ID=Msa1241140-mRNA-1:three_prime_utr;Parent=Msa1241140-mRNA-1 |
Gene Sequence |
Protein sequence |