AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1241140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1241140 MtrunA17_Chr8g0353801 96.959 296 9 0 1 296 1 296 0.0 600
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAGAAAACTGGTCAAAA+TGG 0.212731 8_2:+24502579 Msa1241140:CDS
GTTTCCACCCAGCTCAATTT+TGG 0.250647 8_2:+24505754 Msa1241140:three_prime_UTR
ACCGGGCGATCAAGATTTAA+TGG 0.329908 8_2:+24502544 Msa1241140:CDS
TTAGGTGAATTGTAACCTTC+AGG 0.333912 8_2:-24502614 None:intergenic
GCTCAGAATGATCCAAGATT+TGG 0.336181 8_2:-24504833 None:intergenic
ACTGAATAATTACAGGGAAT+TGG 0.336493 8_2:-24505678 None:intergenic
ATTCCAGACACTCCAAATCT+TGG 0.354694 8_2:+24504821 Msa1241140:intron
GTTGAAATTGAATTCTAATT+CGG 0.357412 8_2:-24502666 None:intergenic
GCAAAGTACTGAATAATTAC+AGG 0.362124 8_2:-24505685 None:intergenic
TTTGGTTGTAATGTAAGTTA+TGG 0.363543 8_2:+24505772 Msa1241140:three_prime_UTR
TTAGCCATGGATTGGTACTA+TGG 0.366474 8_2:+24502497 Msa1241140:exon
TGCATGAACAATCTCTTAGT+TGG 0.367739 8_2:-24505598 None:intergenic
GCTAGATTGATCTTTATCAT+AGG 0.391039 8_2:-24502729 None:intergenic
ACCAGAAAACTGGTCAAAAT+GGG 0.398356 8_2:+24502580 Msa1241140:CDS
GGCATCCATCACCAGAAAAC+TGG 0.409517 8_2:+24502570 Msa1241140:CDS
TACCAGGTGTATTGCTGCAT+TGG 0.434993 8_2:-24503857 None:intergenic
TACATAATACATATAACTTC+TGG 0.435133 8_2:-24505709 None:intergenic
TACATTCAAACAAAATATCA+AGG 0.459131 8_2:-24505871 None:intergenic
CATTACAACCAAAATTGAGC+TGG 0.460144 8_2:-24505762 None:intergenic
TGAGAAATACAGAGAGAGGG+AGG 0.471230 8_2:-24501612 None:intergenic
AAAAGAACAAAACTTGTTGA+AGG 0.475973 8_2:-24501694 None:intergenic
CTGTTGGTCTCTGATTCCAT+TGG 0.476213 8_2:-24505516 None:intergenic
GCCATTAAATCTTGATCGCC+CGG 0.481344 8_2:-24502545 None:intergenic
TAGGTGAGAAATACAGAGAG+AGG 0.487390 8_2:-24501616 None:intergenic
TATTATGTAAGTCTTGTTCA+AGG 0.494533 8_2:+24505723 Msa1241140:three_prime_UTR
ACAGACTATTAGCCATGGAT+TGG 0.499884 8_2:+24502489 Msa1241140:intron
AGGTGAGAAATACAGAGAGA+GGG 0.506575 8_2:-24501615 None:intergenic
AACGAACGATTTCGTTGTAC+CGG 0.507721 8_2:+24502526 Msa1241140:CDS
TCTTGAGGCAATAATTTCAC+AGG 0.518119 8_2:+24504917 Msa1241140:CDS
TTCGGTTGTATCTGAATCCA+TGG 0.525837 8_2:-24502648 None:intergenic
TGATGATTGCTTGAACATAG+AGG 0.536604 8_2:+24504048 Msa1241140:CDS
TAAGAAGAGTTAAGAAGCAA+TGG 0.538057 8_2:-24501533 None:intergenic
GAGAAATACAGAGAGAGGGA+GGG 0.539189 8_2:-24501611 None:intergenic
GCATGCTAACATCACCATCC+AGG 0.540288 8_2:-24505117 None:intergenic
TCTAGCAGTTCAAGTGTATG+TGG 0.542953 8_2:+24502746 Msa1241140:CDS
ACAGAGAGAGGGAGGGAGAG+AGG 0.547692 8_2:-24501604 None:intergenic
GAATTAGAATTCAATTTCAA+CGG 0.553537 8_2:+24502668 Msa1241140:CDS
ATTACAACCAAAATTGAGCT+GGG 0.568507 8_2:-24505761 None:intergenic
GATCATTCTGAGCAATTCAG+TGG 0.574655 8_2:+24504843 Msa1241140:CDS
ACGAACGATTTCGTTGTACC+GGG 0.575268 8_2:+24502527 Msa1241140:CDS
CATGCAAGAGGCAATGCCAT+GGG 0.575721 8_2:+24505135 Msa1241140:CDS
GCTTCATTGTGAACTGCCCA+TGG 0.576976 8_2:-24505151 None:intergenic
AACTGCTCTGTCGACACTGT+TGG 0.577880 8_2:-24505532 None:intergenic
GCATGCAAGAGGCAATGCCA+TGG 0.580050 8_2:+24505134 Msa1241140:CDS
AACTTGTTGAAGGATGAAAC+TGG 0.582612 8_2:-24501684 None:intergenic
ATGGATTGGTACTATGGATG+TGG 0.584308 8_2:+24502503 Msa1241140:CDS
AACGGTGAAAGTTTCCGCGA+TGG 0.584616 8_2:+24502686 Msa1241140:CDS
TCAGAATGTAGTAGAGGACC+TGG 0.590986 8_2:+24505099 Msa1241140:CDS
TGGGGAATAAATACACCTGA+AGG 0.602852 8_2:+24502599 Msa1241140:CDS
GCGATCAAGATTTAATGGCT+AGG 0.605112 8_2:+24502549 Msa1241140:CDS
CAAAGTACTGAATAATTACA+GGG 0.606442 8_2:-24505684 None:intergenic
GTCTGACAACAAGAAACCAA+TGG 0.611234 8_2:+24505500 Msa1241140:CDS
ATCTACACTGCAGAATCTTG+AGG 0.615256 8_2:+24504902 Msa1241140:CDS
AAAACATCAGAATGTAGTAG+AGG 0.618804 8_2:+24505093 Msa1241140:CDS
AGAGTTGCATGTAAGATACT+CGG 0.620268 8_2:-24504020 None:intergenic
GGATCAGCATTCACAATATG+CGG 0.622909 8_2:-24505577 None:intergenic
AACCAATGCAGCAATACACC+TGG 0.625548 8_2:+24503855 Msa1241140:CDS
ACATCCATAGTACCAATCCA+TGG 0.634261 8_2:-24502501 None:intergenic
CCAGAAAACTGGTCAAAATG+GGG 0.639085 8_2:+24502581 Msa1241140:CDS
TGTGTACAAGAAAATGTCAT+CGG 0.643710 8_2:-24502858 None:intergenic
GTTGCAAATCTCATGTTCAA+CGG 0.646462 8_2:+24505552 Msa1241140:CDS
GGTCAGGCAATGCAATTCTG+AGG 0.656482 8_2:+24505627 Msa1241140:three_prime_UTR
AATGTAGTAGAGGACCTGGA+TGG 0.664719 8_2:+24505103 Msa1241140:CDS
AGCAGTTCAAGTGTATGTGG+AGG 0.666769 8_2:+24502749 Msa1241140:CDS
CAGTTCACAATGAAGCCTTG+AGG 0.672028 8_2:+24505158 Msa1241140:CDS
TGGTGATGTTAGCATGCAAG+AGG 0.691812 8_2:+24505123 Msa1241140:CDS
GTACAAGAAAATGTCATCGG+TGG 0.696106 8_2:-24502855 None:intergenic
ACAACCAAAATTGAGCTGGG+TGG 0.710912 8_2:-24505758 None:intergenic
ATTCAAACTTGACTCCATCG+CGG 0.769037 8_2:-24502700 None:intergenic
CAAGGCGGTAAAGTGCATCG+CGG 0.772895 8_2:-24505060 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGAAATTCTTTTTTAAT+GGG - chr8_2:24503197-24503216 None:intergenic 10.0%
!!! AAAATGAAATTCTTTTTTAA+TGG - chr8_2:24503198-24503217 None:intergenic 10.0%
!!! ATATACTACTTTTTTACTTT+TGG + chr8_2:24503229-24503248 Msa1241140:intron 15.0%
!! TAAAAAGTAGTATATTTGAA+AGG - chr8_2:24503308-24503327 None:intergenic 15.0%
!!! AATATACTACTTTTTACATT+TGG + chr8_2:24503312-24503331 Msa1241140:intron 15.0%
!!! TTCAAAATGAACAAATTTTA+CGG - chr8_2:24503360-24503379 None:intergenic 15.0%
!!! TATAGCAAATGTTTTTGTTT+TGG - chr8_2:24501580-24501599 None:intergenic 20.0%
!!! GGTGTTGATTATTTTTATAA+GGG + chr8_2:24501929-24501948 Msa1241140:intron 20.0%
!!! TATTTTTATAAGGGTTGAAA+AGG + chr8_2:24501938-24501957 Msa1241140:intron 20.0%
!!! ATTTTTATAAGGGTTGAAAA+GGG + chr8_2:24501939-24501958 Msa1241140:intron 20.0%
!! ATACAAAAAAGTAAGACTAA+TGG - chr8_2:24501980-24501999 None:intergenic 20.0%
!! AATTAAGTGTTCATTAATTG+AGG + chr8_2:24502289-24502308 Msa1241140:intron 20.0%
!! GTTGAAATTGAATTCTAATT+CGG - chr8_2:24502669-24502688 None:intergenic 20.0%
!! GAATTAGAATTCAATTTCAA+CGG + chr8_2:24502668-24502687 Msa1241140:CDS 20.0%
!! AAGATAAATATGGTGAAATT+CGG - chr8_2:24503036-24503055 None:intergenic 20.0%
!! ACCATATTTATCTTTATCAT+TGG + chr8_2:24503042-24503061 Msa1241140:intron 20.0%
!! TCCAATGATAAAGATAAATA+TGG - chr8_2:24503046-24503065 None:intergenic 20.0%
!!! TCGAACTATATTTTTTTACA+GGG - chr8_2:24503284-24503303 None:intergenic 20.0%
!!! ATCGAACTATATTTTTTTAC+AGG - chr8_2:24503285-24503304 None:intergenic 20.0%
!!! TCAAAACGATATTTTTTTAC+AGG + chr8_2:24503539-24503558 Msa1241140:intron 20.0%
!!! CAAAACGATATTTTTTTACA+GGG + chr8_2:24503540-24503559 Msa1241140:intron 20.0%
!! ATTAAAAGAAAAAGGAGAAA+GGG - chr8_2:24504553-24504572 None:intergenic 20.0%
!! AATTAAAAGAAAAAGGAGAA+AGG - chr8_2:24504554-24504573 None:intergenic 20.0%
!!! TTTCTCCTTTTTCTTTTAAT+TGG + chr8_2:24504553-24504572 Msa1241140:intron 20.0%
!! AAAGTCCAATTAAAAGAAAA+AGG - chr8_2:24504561-24504580 None:intergenic 20.0%
!!! TCAAACACATAATTTAAGTT+TGG - chr8_2:24505346-24505365 None:intergenic 20.0%
!! TACATAATACATATAACTTC+TGG - chr8_2:24505712-24505731 None:intergenic 20.0%
!! TACATTCAAACAAAATATCA+AGG - chr8_2:24505874-24505893 None:intergenic 20.0%
!!! TGTTATATGAGTTTTGTGAT+AGG - chr8_2:24501638-24501657 None:intergenic 25.0%
!!! AAAAGAACAAAACTTGTTGA+AGG - chr8_2:24501697-24501716 None:intergenic 25.0%
!!! TCCTTATTTTTTGCTGTTTT+TGG + chr8_2:24501762-24501781 Msa1241140:intron 25.0%
! TCCAAAAACAGCAAAAAATA+AGG - chr8_2:24501766-24501785 None:intergenic 25.0%
!!! TGTGGTTTTTTTGTTTTTGA+TGG + chr8_2:24501872-24501891 Msa1241140:intron 25.0%
!!! GTTTTTTTGTTTTTGATGGT+TGG + chr8_2:24501876-24501895 Msa1241140:intron 25.0%
!!! ATTTTAAAGCTTAACTGAAG+TGG + chr8_2:24501907-24501926 Msa1241140:intron 25.0%
!!! TTTTAAAGCTTAACTGAAGT+GGG + chr8_2:24501908-24501927 Msa1241140:intron 25.0%
!!! GGGTGTTGATTATTTTTATA+AGG + chr8_2:24501928-24501947 Msa1241140:intron 25.0%
! AAGATTTGGAAATAACTCTT+TGG - chr8_2:24502036-24502055 None:intergenic 25.0%
! ACTTCAAAAAACTGAAGATT+TGG - chr8_2:24502050-24502069 None:intergenic 25.0%
!!! AATCTTCAGTTTTTTGAAGT+TGG + chr8_2:24502050-24502069 Msa1241140:intron 25.0%
!!! TTTTTTGAAGTTGGCTTTTA+TGG + chr8_2:24502059-24502078 Msa1241140:intron 25.0%
! TGCTAAAAACTTGAATCTAT+TGG + chr8_2:24502101-24502120 Msa1241140:intron 25.0%
! GTTGTTAAATAGTGTCTATA+TGG + chr8_2:24502180-24502199 Msa1241140:intron 25.0%
! AATGAACACTTAATTGAACA+TGG - chr8_2:24502284-24502303 None:intergenic 25.0%
! ATAGTTTATACAAGGAACAT+AGG + chr8_2:24502348-24502367 Msa1241140:intron 25.0%
! CATGATGATTATTATCATAC+AGG - chr8_2:24502921-24502940 None:intergenic 25.0%
!! TTGAGGTTTACATATGTTTT+TGG + chr8_2:24503139-24503158 Msa1241140:intron 25.0%
! CAAAAAGTGGTATATTTACA+GGG - chr8_2:24503166-24503185 None:intergenic 25.0%
! AAAAAAGTAGTATATTTGCG+AGG - chr8_2:24503224-24503243 None:intergenic 25.0%
!! TATACTACACCTTTTACTTT+AGG - chr8_2:24503508-24503527 None:intergenic 25.0%
!! AAAGGTGTAGTATATTTGTA+AGG + chr8_2:24503514-24503533 Msa1241140:intron 25.0%
! TTGAATTAATTTCATGCCTA+TGG - chr8_2:24503713-24503732 None:intergenic 25.0%
! GATATGACTATGTTATCTTA+CGG + chr8_2:24503740-24503759 Msa1241140:intron 25.0%
!!! GTTTTCAGGATAAAAGTAAA+AGG - chr8_2:24503838-24503857 None:intergenic 25.0%
! CAAAAGTTCTTAAGACTATA+TGG - chr8_2:24504242-24504261 None:intergenic 25.0%
!! TATTTTGCAAAACATGCAAA+TGG + chr8_2:24504740-24504759 Msa1241140:intron 25.0%
! AATCTAAATCATATACCTCA+AGG - chr8_2:24505176-24505195 None:intergenic 25.0%
!! AGAAAATAGAAGTGTATGTT+TGG - chr8_2:24505319-24505338 None:intergenic 25.0%
! TTTACAAAATCAAGATCATC+AGG - chr8_2:24505392-24505411 None:intergenic 25.0%
!!! CAAAGTACTGAATAATTACA+GGG - chr8_2:24505687-24505706 None:intergenic 25.0%
!!! TATTATGTAAGTCTTGTTCA+AGG + chr8_2:24505723-24505742 Msa1241140:three_prime_UTR 25.0%
! TTTGGTTGTAATGTAAGTTA+TGG + chr8_2:24505772-24505791 Msa1241140:three_prime_UTR 25.0%
!! ATGCTAGAGTAAGAAATTTT+AGG + chr8_2:24505807-24505826 Msa1241140:three_prime_UTR 25.0%
!!! GAGTTTATAGACCATTTTTT+TGG + chr8_2:24505901-24505920 Msa1241140:three_prime_UTR 25.0%
TAAGAAGAGTTAAGAAGCAA+TGG - chr8_2:24501536-24501555 None:intergenic 30.0%
!!! CTGTTTTTGGAGTGTTTTTA+TGG + chr8_2:24501775-24501794 Msa1241140:intron 30.0%
!! GTTTTGATGTGAAATATGCA+TGG + chr8_2:24501814-24501833 Msa1241140:intron 30.0%
TGTATGAAGTTTCCTATGAT+TGG + chr8_2:24501995-24502014 Msa1241140:intron 30.0%
!! GTTTCCTATGATTGGTTTAA+TGG + chr8_2:24502003-24502022 Msa1241140:intron 30.0%
TGAACCATTAAACCAATCAT+AGG - chr8_2:24502010-24502029 None:intergenic 30.0%
AGCATAAACTTGAAGAAACT+AGG - chr8_2:24502085-24502104 None:intergenic 30.0%
TCATTAATTGAGGATCTAGA+AGG + chr8_2:24502299-24502318 Msa1241140:intron 30.0%
GATCCAACATAGTTTATACA+AGG + chr8_2:24502340-24502359 Msa1241140:intron 30.0%
GTTCCTTGTATAAACTATGT+TGG - chr8_2:24502346-24502365 None:intergenic 30.0%
CAAGATCAGCATATAGAAAA+TGG - chr8_2:24502452-24502471 None:intergenic 30.0%
ACCTAAAAATTTCATGACCA+TGG + chr8_2:24502631-24502650 Msa1241140:CDS 30.0%
! TCCATGGTCATGAAATTTTT+AGG - chr8_2:24502635-24502654 None:intergenic 30.0%
GCTAGATTGATCTTTATCAT+AGG - chr8_2:24502732-24502751 None:intergenic 30.0%
TGTGTACAAGAAAATGTCAT+CGG - chr8_2:24502861-24502880 None:intergenic 30.0%
CCAAAAAGTGGTATATTTAC+AGG - chr8_2:24503167-24503186 None:intergenic 30.0%
!! CCTGTAAATATACCACTTTT+TGG + chr8_2:24503164-24503183 Msa1241140:intron 30.0%
AGTCCTTATGAAACAACTAT+TGG + chr8_2:24503415-24503434 Msa1241140:intron 30.0%
GTCCTTATGAAACAACTATT+GGG + chr8_2:24503416-24503435 Msa1241140:intron 30.0%
TCCTTATGAAACAACTATTG+GGG + chr8_2:24503417-24503436 Msa1241140:intron 30.0%
TATTGCACAGACTAATTCAA+AGG + chr8_2:24503463-24503482 Msa1241140:intron 30.0%
!!! AGGGATTTTAAAGCAAAAAG+TGG + chr8_2:24503559-24503578 Msa1241140:intron 30.0%
GTGTAAAAAGAGTAATTACC+AGG - chr8_2:24503876-24503895 None:intergenic 30.0%
CAATACCATAGAAATTGTTC+AGG - chr8_2:24503927-24503946 None:intergenic 30.0%
!! TGCATTCTTTTATTTCCATC+AGG + chr8_2:24503971-24503990 Msa1241140:intron 30.0%
TTACGATTAAGAGTTGAGTT+TGG + chr8_2:24504109-24504128 Msa1241140:intron 30.0%
AAGTTCTTAAGACTATATGG+TGG - chr8_2:24504239-24504258 None:intergenic 30.0%
AAAAACATCATTGCAAAGCA+TGG - chr8_2:24504348-24504367 None:intergenic 30.0%
ATTAAGCTGTTTATCCAATC+AGG + chr8_2:24504449-24504468 Msa1241140:intron 30.0%
TTAAGCTGTTTATCCAATCA+GGG + chr8_2:24504450-24504469 Msa1241140:intron 30.0%
!!! TTAAGAAGCTTTTGAGTTTG+AGG - chr8_2:24504476-24504495 None:intergenic 30.0%
AGAAAAGGTCTCAAAAACAA+GGG - chr8_2:24504507-24504526 None:intergenic 30.0%
TTGAATGTAACCAAATGTGT+CGG - chr8_2:24504618-24504637 None:intergenic 30.0%
AGATGTTGCATTACACTATA+AGG - chr8_2:24504779-24504798 None:intergenic 30.0%
TGAACTAGTTAAGAGAGAAA+GGG - chr8_2:24505018-24505037 None:intergenic 30.0%
TTGAACTAGTTAAGAGAGAA+AGG - chr8_2:24505019-24505038 None:intergenic 30.0%
! ATTCTGATGTTTTGTATCTC+TGG - chr8_2:24505086-24505105 None:intergenic 30.0%
AAAACATCAGAATGTAGTAG+AGG + chr8_2:24505093-24505112 Msa1241140:CDS 30.0%
! CAAATGCTACCTTTGTTTAT+AGG + chr8_2:24505478-24505497 Msa1241140:intron 30.0%
GAGATTGTTCATGCAAAAAT+TGG + chr8_2:24505606-24505625 Msa1241140:three_prime_UTR 30.0%
ACTGAATAATTACAGGGAAT+TGG - chr8_2:24505681-24505700 None:intergenic 30.0%
!! GCAAAGTACTGAATAATTAC+AGG - chr8_2:24505688-24505707 None:intergenic 30.0%
ATTACAACCAAAATTGAGCT+GGG - chr8_2:24505764-24505783 None:intergenic 30.0%
CACTCATAGAAGAAAAAACT+AGG - chr8_2:24505844-24505863 None:intergenic 30.0%
!!! ACCATTTTTTTGGCAAACTT+GGG + chr8_2:24505911-24505930 Msa1241140:three_prime_UTR 30.0%
!! AACTTGTTGAAGGATGAAAC+TGG - chr8_2:24501687-24501706 None:intergenic 35.0%
TATAAGGGTTGAAAAGGGTT+AGG + chr8_2:24501944-24501963 Msa1241140:intron 35.0%
! CTTTTACAGACTATTAGCCA+TGG + chr8_2:24502484-24502503 Msa1241140:intron 35.0%
ACCAGAAAACTGGTCAAAAT+GGG + chr8_2:24502580-24502599 Msa1241140:CDS 35.0%
TTAGGTGAATTGTAACCTTC+AGG - chr8_2:24502617-24502636 None:intergenic 35.0%
!! ACTTCTGGGATTAATATGCT+TGG + chr8_2:24502887-24502906 Msa1241140:intron 35.0%
! ATAGAGCATTCAATTTCCAC+TGG - chr8_2:24502999-24503018 None:intergenic 35.0%
TCATTGGAGCCAAAACAAAA+TGG + chr8_2:24503058-24503077 Msa1241140:intron 35.0%
TTCATGCTTATAGAGTTGTG+CGG - chr8_2:24503086-24503105 None:intergenic 35.0%
AAGCATGAACCTGTTATAGT+AGG + chr8_2:24503097-24503116 Msa1241140:intron 35.0%
AGCATGAACCTGTTATAGTA+GGG + chr8_2:24503098-24503117 Msa1241140:intron 35.0%
AACCTGTTATAGTAGGGTAA+GGG + chr8_2:24503104-24503123 Msa1241140:intron 35.0%
! AAGGGCTACTATTTTCTTTG+AGG + chr8_2:24503122-24503141 Msa1241140:intron 35.0%
ATGGGACTAATACCAAAAAG+TGG - chr8_2:24503179-24503198 None:intergenic 35.0%
!!! ACTTTTGGTTCTTGCTGTTT+TGG + chr8_2:24503244-24503263 Msa1241140:intron 35.0%
!! TACATTTGGTCTTGCTGTTT+CGG + chr8_2:24503326-24503345 Msa1241140:intron 35.0%
CCTTATGAAACAACTATTGG+GGG + chr8_2:24503418-24503437 Msa1241140:intron 35.0%
CTTATGAAACAACTATTGGG+GGG + chr8_2:24503419-24503438 Msa1241140:intron 35.0%
CAACAAGGACCTAAAGTAAA+AGG + chr8_2:24503496-24503515 Msa1241140:intron 35.0%
GCAAAAAGTGGTAGATTTGT+TGG + chr8_2:24503571-24503590 Msa1241140:intron 35.0%
!! AAGTGGTAGATTTGTTGGTA+CGG + chr8_2:24503576-24503595 Msa1241140:intron 35.0%
CAGAGACATTCAATTCTTAC+TGG + chr8_2:24503684-24503703 Msa1241140:intron 35.0%
TCACATGTTTCACATAATGC+AGG + chr8_2:24503766-24503785 Msa1241140:intron 35.0%
CACATGTTTCACATAATGCA+GGG + chr8_2:24503767-24503786 Msa1241140:intron 35.0%
!! TTGTTTGAGTTTTCAGCACA+GGG - chr8_2:24503813-24503832 None:intergenic 35.0%
AGTTGCCTGAACAATTTCTA+TGG + chr8_2:24503919-24503938 Msa1241140:intron 35.0%
AGAGTTGCATGTAAGATACT+CGG - chr8_2:24504023-24504042 None:intergenic 35.0%
TGATGATTGCTTGAACATAG+AGG + chr8_2:24504048-24504067 Msa1241140:CDS 35.0%
! AGATTCATGTTTTACCACCA+CGG - chr8_2:24504186-24504205 None:intergenic 35.0%
!! GACACATAGACAAGAGTATT+TGG - chr8_2:24504274-24504293 None:intergenic 35.0%
! GTGTATAACAAATGACTTGC+AGG - chr8_2:24504296-24504315 None:intergenic 35.0%
CAGCATGAAATGACTTATAC+TGG - chr8_2:24504318-24504337 None:intergenic 35.0%
CAGAAAAGGTCTCAAAAACA+AGG - chr8_2:24504508-24504527 None:intergenic 35.0%
TCTTGAGGCAATAATTTCAC+AGG + chr8_2:24504917-24504936 Msa1241140:CDS 35.0%
GAAGTGTATGTTTGGTTGAA+CGG - chr8_2:24505311-24505330 None:intergenic 35.0%
GTTGTCAGACCTATAAACAA+AGG - chr8_2:24505490-24505509 None:intergenic 35.0%
GTTGCAAATCTCATGTTCAA+CGG + chr8_2:24505552-24505571 Msa1241140:CDS 35.0%
TGCATGAACAATCTCTTAGT+TGG - chr8_2:24505601-24505620 None:intergenic 35.0%
TGTTCATGCAAAAATTGGTC+AGG + chr8_2:24505611-24505630 Msa1241140:three_prime_UTR 35.0%
CATTACAACCAAAATTGAGC+TGG - chr8_2:24505765-24505784 None:intergenic 35.0%
!!! GACCATTTTTTTGGCAAACT+TGG + chr8_2:24505910-24505929 Msa1241140:three_prime_UTR 35.0%
ACCCAAGTTTGCCAAAAAAA+TGG - chr8_2:24505915-24505934 None:intergenic 35.0%
!!! TTTTTTGGCAAACTTGGGTT+AGG + chr8_2:24505916-24505935 Msa1241140:three_prime_UTR 35.0%
! GGTTAGGTCATAATTTTGTG+TGG + chr8_2:24505932-24505951 Msa1241140:three_prime_UTR 35.0%
AGGTGAGAAATACAGAGAGA+GGG - chr8_2:24501618-24501637 None:intergenic 40.0%
TAGGTGAGAAATACAGAGAG+AGG - chr8_2:24501619-24501638 None:intergenic 40.0%
TTGAAAAGGGTTAGGAGCAA+TGG + chr8_2:24501952-24501971 Msa1241140:intron 40.0%
ACGCAGATCGAAGAAAATAG+TGG - chr8_2:24502227-24502246 None:intergenic 40.0%
ACAGACTATTAGCCATGGAT+TGG + chr8_2:24502489-24502508 Msa1241140:intron 40.0%
!! TTAGCCATGGATTGGTACTA+TGG + chr8_2:24502497-24502516 Msa1241140:exon 40.0%
ACATCCATAGTACCAATCCA+TGG - chr8_2:24502504-24502523 None:intergenic 40.0%
!! ATGGATTGGTACTATGGATG+TGG + chr8_2:24502503-24502522 Msa1241140:CDS 40.0%
AACGAACGATTTCGTTGTAC+CGG + chr8_2:24502526-24502545 Msa1241140:CDS 40.0%
GCGATCAAGATTTAATGGCT+AGG + chr8_2:24502549-24502568 Msa1241140:CDS 40.0%
!! TTTGACCAGTTTTCTGGTGA+TGG - chr8_2:24502578-24502597 None:intergenic 40.0%
CACCAGAAAACTGGTCAAAA+TGG + chr8_2:24502579-24502598 Msa1241140:CDS 40.0%
CCAGAAAACTGGTCAAAATG+GGG + chr8_2:24502581-24502600 Msa1241140:CDS 40.0%
TGGGGAATAAATACACCTGA+AGG + chr8_2:24502599-24502618 Msa1241140:CDS 40.0%
TTCGGTTGTATCTGAATCCA+TGG - chr8_2:24502651-24502670 None:intergenic 40.0%
ATTCAAACTTGACTCCATCG+CGG - chr8_2:24502703-24502722 None:intergenic 40.0%
TCTAGCAGTTCAAGTGTATG+TGG + chr8_2:24502746-24502765 Msa1241140:CDS 40.0%
GTACAAGAAAATGTCATCGG+TGG - chr8_2:24502858-24502877 None:intergenic 40.0%
TTGTACACAAGCGTAACTTC+TGG + chr8_2:24502872-24502891 Msa1241140:intron 40.0%
TGTACACAAGCGTAACTTCT+GGG + chr8_2:24502873-24502892 Msa1241140:intron 40.0%
ATGCAAAGCATACTCATGCT+AGG - chr8_2:24502965-24502984 None:intergenic 40.0%
!! TGCATTTTAGCAAAGTCCAG+TGG + chr8_2:24502980-24502999 Msa1241140:intron 40.0%
!! TGTGCGGAACCATTTTGTTT+TGG - chr8_2:24503070-24503089 None:intergenic 40.0%
GAACCTGTTATAGTAGGGTA+AGG + chr8_2:24503103-24503122 Msa1241140:intron 40.0%
! CCCCCAATAGTTGTTTCATA+AGG - chr8_2:24503421-24503440 None:intergenic 40.0%
AAAGGTGACCAAAGACAACA+AGG + chr8_2:24503481-24503500 Msa1241140:intron 40.0%
! CTTTAGGTCCTTGTTGTCTT+TGG - chr8_2:24503492-24503511 None:intergenic 40.0%
! CAATTCTTACTGGCTACCAT+AGG + chr8_2:24503694-24503713 Msa1241140:intron 40.0%
!! CTTGTTTGAGTTTTCAGCAC+AGG - chr8_2:24503814-24503833 None:intergenic 40.0%
!!! GTATTGCTGCATTGGTTTTC+AGG - chr8_2:24503852-24503871 None:intergenic 40.0%
AGAGTTGAGTTTGGTATCTC+AGG + chr8_2:24504118-24504137 Msa1241140:intron 40.0%
GAGTTGAGTTTGGTATCTCA+GGG + chr8_2:24504119-24504138 Msa1241140:intron 40.0%
! GATTCATGTTTTACCACCAC+GGG - chr8_2:24504185-24504204 None:intergenic 40.0%
CATCACAAGTTCACAACACA+AGG + chr8_2:24504376-24504395 Msa1241140:intron 40.0%
!! GATGAAGCATTGACATAGAC+AGG - chr8_2:24504705-24504724 None:intergenic 40.0%
ATTCCAGACACTCCAAATCT+TGG + chr8_2:24504821-24504840 Msa1241140:intron 40.0%
GCTCAGAATGATCCAAGATT+TGG - chr8_2:24504836-24504855 None:intergenic 40.0%
GATCATTCTGAGCAATTCAG+TGG + chr8_2:24504843-24504862 Msa1241140:CDS 40.0%
ATCTACACTGCAGAATCTTG+AGG + chr8_2:24504902-24504921 Msa1241140:CDS 40.0%
GCACATTAAATCAGATGCGA+AGG - chr8_2:24504967-24504986 None:intergenic 40.0%
! GATGTTTTGTATCTCTGGCA+AGG - chr8_2:24505081-24505100 None:intergenic 40.0%
TCGATTGACAGTGAGATTGT+CGG + chr8_2:24505220-24505239 Msa1241140:intron 40.0%
GTCTGACAACAAGAAACCAA+TGG + chr8_2:24505500-24505519 Msa1241140:CDS 40.0%
GGATCAGCATTCACAATATG+CGG - chr8_2:24505580-24505599 None:intergenic 40.0%
GAGAAATACAGAGAGAGGGA+GGG - chr8_2:24501614-24501633 None:intergenic 45.0%
TGAGAAATACAGAGAGAGGG+AGG - chr8_2:24501615-24501634 None:intergenic 45.0%
ACGAACGATTTCGTTGTACC+GGG + chr8_2:24502527-24502546 Msa1241140:CDS 45.0%
ACCGGGCGATCAAGATTTAA+TGG + chr8_2:24502544-24502563 Msa1241140:CDS 45.0%
GCCATTAAATCTTGATCGCC+CGG - chr8_2:24502548-24502567 None:intergenic 45.0%
!! CCCCATTTTGACCAGTTTTC+TGG - chr8_2:24502584-24502603 None:intergenic 45.0%
AGCAGTTCAAGTGTATGTGG+AGG + chr8_2:24502749-24502768 Msa1241140:CDS 45.0%
AGCCCTTACCCTACTATAAC+AGG - chr8_2:24503109-24503128 None:intergenic 45.0%
AACCAATGCAGCAATACACC+TGG + chr8_2:24503855-24503874 Msa1241140:CDS 45.0%
TACCAGGTGTATTGCTGCAT+TGG - chr8_2:24503860-24503879 None:intergenic 45.0%
TCATTCTGCAGTTCACCTGA+TGG - chr8_2:24503989-24504008 None:intergenic 45.0%
! TTTGAGTTTGAGGCCCTGAT+TGG - chr8_2:24504466-24504485 None:intergenic 45.0%
GGGGAACAGTTACACAGAAA+AGG - chr8_2:24504522-24504541 None:intergenic 45.0%
AAGGAGAAAGGGAGTAGCAT+GGG - chr8_2:24504542-24504561 None:intergenic 45.0%
AAAGGAGAAAGGGAGTAGCA+TGG - chr8_2:24504543-24504562 None:intergenic 45.0%
ATGTCGTGTCAGTGTGATAC+GGG - chr8_2:24504591-24504610 None:intergenic 45.0%
CATGTCGTGTCAGTGTGATA+CGG - chr8_2:24504592-24504611 None:intergenic 45.0%
GTCAATGTCAGTGTCATCTC+TGG + chr8_2:24504675-24504694 Msa1241140:intron 45.0%
! GATCCAAGATTTGGAGTGTC+TGG - chr8_2:24504827-24504846 None:intergenic 45.0%
! GTTTTGTATCTCTGGCAAGG+CGG - chr8_2:24505078-24505097 None:intergenic 45.0%
TCAGAATGTAGTAGAGGACC+TGG + chr8_2:24505099-24505118 Msa1241140:CDS 45.0%
AATGTAGTAGAGGACCTGGA+TGG + chr8_2:24505103-24505122 Msa1241140:CDS 45.0%
! TGGTGATGTTAGCATGCAAG+AGG + chr8_2:24505123-24505142 Msa1241140:CDS 45.0%
CAGTTCACAATGAAGCCTTG+AGG + chr8_2:24505158-24505177 Msa1241140:CDS 45.0%
CAGTGAGATTGTCGGAATCA+CGG + chr8_2:24505228-24505247 Msa1241140:intron 45.0%
CGGTGAGTTTGGCAAAATCA+CGG - chr8_2:24505291-24505310 None:intergenic 45.0%
GTTTGGTTGAACGGTGAGTT+TGG - chr8_2:24505302-24505321 None:intergenic 45.0%
! CTGTTGGTCTCTGATTCCAT+TGG - chr8_2:24505519-24505538 None:intergenic 45.0%
! GTTTCCACCCAGCTCAATTT+TGG + chr8_2:24505754-24505773 Msa1241140:three_prime_UTR 45.0%
ACAACCAAAATTGAGCTGGG+TGG - chr8_2:24505761-24505780 None:intergenic 45.0%
!!! AAAATTTTAATTTTTTTTTG+TGG + chr8_2:24501854-24501873 Msa1241140:intron 5.0%
GGCATCCATCACCAGAAAAC+TGG + chr8_2:24502570-24502589 Msa1241140:CDS 50.0%
AACGGTGAAAGTTTCCGCGA+TGG + chr8_2:24502686-24502705 Msa1241140:CDS 50.0%
AGGAGAAAGGGAGTAGCATG+GGG - chr8_2:24504541-24504560 None:intergenic 50.0%
CGACATGACACCGACACATT+TGG + chr8_2:24504605-24504624 Msa1241140:intron 50.0%
GCATGCTAACATCACCATCC+AGG - chr8_2:24505120-24505139 None:intergenic 50.0%
CATGCAAGAGGCAATGCCAT+GGG + chr8_2:24505135-24505154 Msa1241140:CDS 50.0%
GCTTCATTGTGAACTGCCCA+TGG - chr8_2:24505154-24505173 None:intergenic 50.0%
GGAATCACGGTCAGACACTT+TGG + chr8_2:24505241-24505260 Msa1241140:intron 50.0%
AACTGCTCTGTCGACACTGT+TGG - chr8_2:24505535-24505554 None:intergenic 50.0%
GGTCAGGCAATGCAATTCTG+AGG + chr8_2:24505627-24505646 Msa1241140:three_prime_UTR 50.0%
CAAGGCGGTAAAGTGCATCG+CGG - chr8_2:24505063-24505082 None:intergenic 55.0%
GCATGCAAGAGGCAATGCCA+TGG + chr8_2:24505134-24505153 Msa1241140:CDS 55.0%
ACAGAGAGAGGGAGGGAGAG+AGG - chr8_2:24501607-24501626 None:intergenic 60.0%
ACGGGTCTAGCGCTAGTGGT+TGG - chr8_2:24504167-24504186 None:intergenic 60.0%
AACCACTAGCGCTAGACCCG+TGG + chr8_2:24504166-24504185 Msa1241140:intron 60.0%
CACCACGGGTCTAGCGCTAG+TGG - chr8_2:24504171-24504190 None:intergenic 65.0%
CACTAGCGCTAGACCCGTGG+TGG + chr8_2:24504169-24504188 Msa1241140:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 24501526 24505981 24501526 ID=Msa1241140;Name=Msa1241140
chr8_2 mRNA 24501526 24505981 24501526 ID=Msa1241140-mRNA-1;Parent=Msa1241140;Name=Msa1241140-mRNA-1;_AED=0.23;_eAED=0.23;_QI=236|1|1|1|0.83|0.71|7|385|296
chr8_2 exon 24501526 24501751 24501526 ID=Msa1241140-mRNA-1:exon:8669;Parent=Msa1241140-mRNA-1
chr8_2 exon 24502493 24502873 24502493 ID=Msa1241140-mRNA-1:exon:8670;Parent=Msa1241140-mRNA-1
chr8_2 exon 24503788 24503876 24503788 ID=Msa1241140-mRNA-1:exon:8671;Parent=Msa1241140-mRNA-1
chr8_2 exon 24503993 24504069 24503993 ID=Msa1241140-mRNA-1:exon:8672;Parent=Msa1241140-mRNA-1
chr8_2 exon 24504828 24504938 24504828 ID=Msa1241140-mRNA-1:exon:8673;Parent=Msa1241140-mRNA-1
chr8_2 exon 24505034 24505179 24505034 ID=Msa1241140-mRNA-1:exon:8674;Parent=Msa1241140-mRNA-1
chr8_2 exon 24505500 24505981 24505500 ID=Msa1241140-mRNA-1:exon:8675;Parent=Msa1241140-mRNA-1
chr8_2 five_prime_UTR 24501526 24501751 24501526 ID=Msa1241140-mRNA-1:five_prime_utr;Parent=Msa1241140-mRNA-1
chr8_2 five_prime_UTR 24502493 24502502 24502493 ID=Msa1241140-mRNA-1:five_prime_utr;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24502503 24502873 24502503 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24503788 24503876 24503788 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24503993 24504069 24503993 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24504828 24504938 24504828 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24505034 24505179 24505034 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 CDS 24505500 24505596 24505500 ID=Msa1241140-mRNA-1:cds;Parent=Msa1241140-mRNA-1
chr8_2 three_prime_UTR 24505597 24505981 24505597 ID=Msa1241140-mRNA-1:three_prime_utr;Parent=Msa1241140-mRNA-1
Gene Sequence

>Msa1241140

ATGGATTGGTACTATGGATGTGGAACGAACGATTTCGTTGTACCGGGCGATCAAGATTTAATGGCTAGGCATCCATCACCAGAAAACTGGTCAAAATGGGGAATAAATACACCTGAAGGTTACAATTCACCTAAAAATTTCATGACCATGGATTCAGATACAACCGAATTAGAATTCAATTTCAACGGTGAAAGTTTCCGCGATGGAGTCAAGTTTGAATCATCTTCCTATGATAAAGATCAATCTAGCAGTTCAAGTGTATGTGGAGGATTGACTGAGCAATCTTTTCAACAATCACGTCATCAACATCAGCAGAATCAGCTTCAAGAACTATCATCAAGTTTCGAGCAGACCACCGATGACATTTTCTTGGATTCTATACTTGAAGATTTTCCCTGTGCTGAAAACTCAAACAAGTCCTTTTACTTTTATCCTGAAAACCAATGCAGCAATACACCTGGTGAACTGCAGAATGATATTGCAGCTTCCGAGTATCTTACATGCAACTCTAATTCTGATGATTGCTTGAACATAGAGACACTCCAAATCTTGGATCATTCTGAGCAATTCAGTGGAGATGAAGCAATGCATAAACACTCGTCTATTGAAGAATCTACACTGCAGAATCTTGAGGCAATAATTTCACAGTTCAACGACAAGACTCGAATTCACTTCCGCGATGCACTTTACCGCCTTGCCAGAGATACAAAACATCAGAATGTAGTAGAGGACCTGGATGGTGATGTTAGCATGCAAGAGGCAATGCCATGGGCAGTTCACAATGAAGCCTTGAGGTCTGACAACAAGAAACCAATGGAATCAGAGACCAACAGTGTCGACAGAGCAGTTGCAAATCTCATGTTCAACGGAACCGCATATTGTGAATGCTGA

Protein sequence

>Msa1241140

MDWYYGCGTNDFVVPGDQDLMARHPSPENWSKWGINTPEGYNSPKNFMTMDSDTTELEFNFNGESFRDGVKFESSSYDKDQSSSSSVCGGLTEQSFQQSRHQHQQNQLQELSSSFEQTTDDIFLDSILEDFPCAENSNKSFYFYPENQCSNTPGELQNDIAASEYLTCNSNSDDCLNIETLQILDHSEQFSGDEAMHKHSSIEESTLQNLEAIISQFNDKTRIHFRDALYRLARDTKHQNVVEDLDGDVSMQEAMPWAVHNEALRSDNKKPMESETNSVDRAVANLMFNGTAYCEC*