Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524290 | XP_003604043.1 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.69e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524290 | sp|Q9SZN7|HIP26_ARATH | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.09e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524290 | G7J8I5 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.29e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186310 | Msa0524290 | 0.818852 | 1.578637e-52 | -8.615850e-47 |
| Msa0189300 | Msa0524290 | 0.809173 | 2.156781e-50 | -8.615850e-47 |
| Msa0227440 | Msa0524290 | 0.802191 | 6.307656e-49 | -8.615850e-47 |
| Msa0231660 | Msa0524290 | 0.818795 | 1.626340e-52 | -8.615850e-47 |
| Msa0386040 | Msa0524290 | 0.832590 | 8.665021e-56 | -8.615850e-47 |
| Msa0387910 | Msa0524290 | 0.832643 | 8.407128e-56 | -8.615850e-47 |
| Msa0421260 | Msa0524290 | 0.817122 | 3.884521e-52 | -8.615850e-47 |
| Msa0436920 | Msa0524290 | -0.813711 | 2.228771e-51 | -8.615850e-47 |
| Msa0467220 | Msa0524290 | 0.838471 | 2.820094e-57 | -8.615850e-47 |
| Msa0251230 | Msa0524290 | 0.817124 | 3.880689e-52 | -8.615850e-47 |
| Msa0271360 | Msa0524290 | 0.813093 | 3.047379e-51 | -8.615850e-47 |
| Msa0524290 | Msa0524400 | 0.993632 | 4.214843e-201 | -8.615850e-47 |
| Msa0524290 | Msa0545080 | 0.800753 | 1.242890e-48 | -8.615850e-47 |
| Msa0524290 | Msa0602370 | 0.843150 | 1.672600e-58 | -8.615850e-47 |
| Msa0524290 | Msa0609000 | 0.800438 | 1.441350e-48 | -8.615850e-47 |
| Msa0524290 | Msa0643320 | 0.843808 | 1.115439e-58 | -8.615850e-47 |
| Msa0524290 | Msa0661710 | 0.803434 | 3.492582e-49 | -8.615850e-47 |
| Msa0524290 | Msa0683140 | 0.853101 | 2.985471e-61 | -8.615850e-47 |
| Msa0524290 | Msa0683600 | 0.851319 | 9.592230e-61 | -8.615850e-47 |
| Msa0524290 | Msa0719420 | 0.803663 | 3.130431e-49 | -8.615850e-47 |
| Msa0524290 | Msa0789680 | 0.804663 | 1.938612e-49 | -8.615850e-47 |
| Msa0524290 | Msa1088290 | 0.839992 | 1.136744e-57 | -8.615850e-47 |
| Msa0524290 | Msa1133230 | 0.813061 | 3.096491e-51 | -8.615850e-47 |
| Msa0524290 | Msa1133250 | 0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0524290 | Msa1364940 | 0.987429 | 3.154341e-170 | -8.615850e-47 |
| Msa0524290 | Msa1367490 | 0.993052 | 3.897821e-197 | -8.615850e-47 |
| Msa0524290 | Msa1417570 | 0.965352 | 1.707982e-124 | -8.615850e-47 |
| Msa0524290 | Msa1422810 | 0.828542 | 8.483877e-55 | -8.615850e-47 |
| Msa0524290 | Msa1424620 | 0.992185 | 8.520039e-192 | -8.615850e-47 |
| Msa0524290 | Msa1435520 | 0.952715 | 1.331152e-110 | -8.615850e-47 |
| Msa0524290 | Msa1454950 | 0.829848 | 4.092088e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524290 | MtrunA17_Chr3g0145621 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.48e-116 | 325 |
| Msa0524290 | MtrunA17_Chr4g0036931 | 79.245 | 159 | 27 | 3 | 1 | 156 | 1 | 156 | 1.70e-88 | 254 |
| Msa0524290 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.73e-66 | 197 |
| Msa0524290 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.24e-53 | 166 |
| Msa0524290 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.19e-49 | 155 |
| Msa0524290 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 4.89e-49 | 155 |
| Msa0524290 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.22e-45 | 146 |
| Msa0524290 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 5.20e-45 | 145 |
| Msa0524290 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 6.43e-45 | 145 |
| Msa0524290 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.20e-42 | 138 |
| Msa0524290 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.31e-35 | 118 |
| Msa0524290 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.24e-22 | 86.3 |
| Msa0524290 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.45e-20 | 83.2 |
| Msa0524290 | MtrunA17_Chr6g0471231 | 36.364 | 143 | 70 | 6 | 28 | 156 | 5 | 140 | 3.83e-18 | 75.9 |
| Msa0524290 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 2.98e-14 | 65.5 |
| Msa0524290 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.22e-14 | 67.4 |
| Msa0524290 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 1.95e-12 | 63.5 |
| Msa0524290 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 3.47e-12 | 58.9 |
| Msa0524290 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.05e-12 | 62.4 |
| Msa0524290 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 7.76e-12 | 62.0 |
| Msa0524290 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 1.39e-11 | 58.2 |
| Msa0524290 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.51e-11 | 57.0 |
| Msa0524290 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.83e-11 | 60.5 |
| Msa0524290 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 3.76e-11 | 58.9 |
| Msa0524290 | MtrunA17_Chr7g0263491 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 6.49e-11 | 58.9 |
| Msa0524290 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524290 | AT4G38580.1 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa0524290 | AT4G38580.2 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa0524290 | AT4G35060.1 | 70.701 | 157 | 41 | 3 | 1 | 156 | 1 | 153 | 1.89e-76 | 224 |
| Msa0524290 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa0524290 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa0524290 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.48e-58 | 178 |
| Msa0524290 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 9.65e-54 | 167 |
| Msa0524290 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 2.00e-50 | 159 |
| Msa0524290 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.35e-47 | 150 |
| Msa0524290 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.24e-44 | 144 |
| Msa0524290 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.48e-42 | 139 |
| Msa0524290 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.29e-40 | 132 |
| Msa0524290 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.51e-25 | 94.4 |
| Msa0524290 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.89e-24 | 91.7 |
| Msa0524290 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.05e-20 | 82.4 |
| Msa0524290 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.81e-19 | 80.9 |
| Msa0524290 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.57e-18 | 77.8 |
| Msa0524290 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.37e-16 | 71.2 |
| Msa0524290 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.70e-16 | 71.2 |
| Msa0524290 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.26e-15 | 69.7 |
| Msa0524290 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 3.31e-14 | 65.9 |
| Msa0524290 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.07e-13 | 65.1 |
| Msa0524290 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.20e-12 | 60.8 |
| Msa0524290 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa0524290 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa0524290 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa0524290 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.74e-11 | 61.2 |
| Msa0524290 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.40e-11 | 60.1 |
Find 60 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | 3_4:-77778685 | Msa0524290:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | 3_4:-77778039 | Msa0524290:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | 3_4:-77778610 | Msa0524290:intron |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | 3_4:+77777965 | None:intergenic |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | 3_4:-77778407 | Msa0524290:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | 3_4:+77777866 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | 3_4:+77778286 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | 3_4:-77778229 | Msa0524290:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | 3_4:+77778373 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | 3_4:+77778701 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | 3_4:+77777882 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | 3_4:-77778351 | Msa0524290:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | 3_4:+77778428 | None:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | 3_4:+77778249 | None:intergenic |
| CAATTTCATATAATGATTTG+TGG | 0.435765 | 3_4:-77777950 | Msa0524290:three_prime_UTR |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | 3_4:-77778676 | Msa0524290:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | 3_4:+77778307 | None:intergenic |
| AATTTCATATAATGATTTGT+GGG | 0.444929 | 3_4:-77777949 | Msa0524290:three_prime_UTR |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | 3_4:-77778111 | Msa0524290:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | 3_4:+77778082 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | 3_4:+77778604 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | 3_4:+77778613 | None:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | 3_4:+77777894 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | 3_4:+77778316 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | 3_4:-77778218 | Msa0524290:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | 3_4:-77778432 | Msa0524290:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | 3_4:+77778614 | None:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | 3_4:-77778406 | Msa0524290:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | 3_4:-77778268 | Msa0524290:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | 3_4:+77778135 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | 3_4:-77778339 | Msa0524290:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | 3_4:+77778024 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | 3_4:+77778287 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | 3_4:+77778626 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | 3_4:-77778684 | Msa0524290:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | 3_4:+77778203 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | 3_4:-77778358 | Msa0524290:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | 3_4:-77778350 | Msa0524290:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | 3_4:-77778645 | Msa0524290:CDS |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | 3_4:-77778466 | Msa0524290:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | 3_4:-77778509 | Msa0524290:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | 3_4:-77778642 | Msa0524290:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | 3_4:+77778204 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | 3_4:-77778457 | Msa0524290:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | 3_4:-77778470 | Msa0524290:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | 3_4:+77778180 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | 3_4:+77778141 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | 3_4:-77778473 | Msa0524290:CDS |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | 3_4:-77778419 | Msa0524290:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | 3_4:-77778477 | Msa0524290:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | 3_4:+77778142 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | 3_4:+77778253 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | 3_4:-77778380 | Msa0524290:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | 3_4:-77778405 | Msa0524290:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | 3_4:+77778183 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | 3_4:+77778138 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | 3_4:-77778295 | Msa0524290:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | 3_4:-77778383 | Msa0524290:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | 3_4:+77778344 | None:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | 3_4:-77778499 | Msa0524290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | + | chr3_4:77778042-77778061 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | - | chr3_4:77778078-77778097 | Msa0524290:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | chr3_4:77778497-77778516 | Msa0524290:CDS | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | - | chr3_4:77778659-77778678 | Msa0524290:CDS | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | + | chr3_4:77778042-77778061 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | - | chr3_4:77778078-77778097 | Msa0524290:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | chr3_4:77778497-77778516 | Msa0524290:CDS | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | - | chr3_4:77778659-77778678 | Msa0524290:CDS | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | chr3_4:77777923-77777942 | Msa0524290:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | chr3_4:77777924-77777943 | Msa0524290:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | chr3_4:77778587-77778606 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | - | chr3_4:77778658-77778677 | Msa0524290:CDS | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | chr3_4:77777923-77777942 | Msa0524290:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | chr3_4:77777924-77777943 | Msa0524290:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | chr3_4:77778587-77778606 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | - | chr3_4:77778658-77778677 | Msa0524290:CDS | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | chr3_4:77777910-77777929 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | chr3_4:77778037-77778056 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | chr3_4:77778529-77778548 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | chr3_4:77778527-77778546 | Msa0524290:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | chr3_4:77778569-77778588 | Msa0524290:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | chr3_4:77778646-77778665 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | chr3_4:77778745-77778764 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | chr3_4:77777910-77777929 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | chr3_4:77778037-77778056 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | chr3_4:77778529-77778548 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | chr3_4:77778527-77778546 | Msa0524290:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | chr3_4:77778569-77778588 | Msa0524290:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | chr3_4:77778646-77778665 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | chr3_4:77778745-77778764 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | + | chr3_4:77778007-77778026 | None:intergenic | 30.0% | |
| TGAATATGAATGGAATGGAA+TGG | + | chr3_4:77778032-77778051 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | chr3_4:77778081-77778100 | Msa0524290:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | chr3_4:77778176-77778195 | Msa0524290:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | chr3_4:77778183-77778202 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | chr3_4:77778362-77778381 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | chr3_4:77778533-77778552 | Msa0524290:intron | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | - | chr3_4:77778631-77778650 | Msa0524290:CDS | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | + | chr3_4:77778729-77778748 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | + | chr3_4:77778007-77778026 | None:intergenic | 30.0% | |
| TGAATATGAATGGAATGGAA+TGG | + | chr3_4:77778032-77778051 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | chr3_4:77778081-77778100 | Msa0524290:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | chr3_4:77778176-77778195 | Msa0524290:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | chr3_4:77778183-77778202 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | chr3_4:77778362-77778381 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | chr3_4:77778533-77778552 | Msa0524290:intron | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | - | chr3_4:77778631-77778650 | Msa0524290:CDS | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | + | chr3_4:77778729-77778748 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | + | chr3_4:77777997-77778016 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | chr3_4:77778189-77778208 | Msa0524290:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | chr3_4:77778225-77778244 | Msa0524290:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | chr3_4:77778358-77778377 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | chr3_4:77778379-77778398 | Msa0524290:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | chr3_4:77778476-77778495 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | - | chr3_4:77778614-77778633 | Msa0524290:CDS | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | + | chr3_4:77778717-77778736 | None:intergenic | 35.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | + | chr3_4:77777997-77778016 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | chr3_4:77778189-77778208 | Msa0524290:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | chr3_4:77778225-77778244 | Msa0524290:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | chr3_4:77778358-77778377 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | chr3_4:77778379-77778398 | Msa0524290:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | chr3_4:77778476-77778495 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | - | chr3_4:77778614-77778633 | Msa0524290:CDS | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | + | chr3_4:77778717-77778736 | None:intergenic | 35.0% | |
| AAGAGATAATATGGGTGCTC+TGG | - | chr3_4:77777932-77777951 | Msa0524290:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | chr3_4:77777998-77778017 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | chr3_4:77777998-77778017 | Msa0524290:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | chr3_4:77778228-77778247 | Msa0524290:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | chr3_4:77778473-77778492 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | - | chr3_4:77777932-77777951 | Msa0524290:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | chr3_4:77777998-77778017 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | chr3_4:77777998-77778017 | Msa0524290:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | chr3_4:77778228-77778247 | Msa0524290:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | chr3_4:77778473-77778492 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | chr3_4:77777963-77777982 | Msa0524290:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | chr3_4:77778099-77778118 | Msa0524290:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | chr3_4:77778109-77778128 | Msa0524290:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | chr3_4:77778131-77778150 | Msa0524290:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | chr3_4:77778135-77778154 | Msa0524290:exon | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | chr3_4:77778295-77778314 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | chr3_4:77778324-77778343 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | chr3_4:77778325-77778344 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | chr3_4:77778340-77778359 | Msa0524290:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | chr3_4:77778390-77778409 | Msa0524290:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | chr3_4:77777963-77777982 | Msa0524290:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | chr3_4:77778099-77778118 | Msa0524290:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | chr3_4:77778109-77778128 | Msa0524290:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | chr3_4:77778131-77778150 | Msa0524290:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | chr3_4:77778135-77778154 | Msa0524290:exon | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | chr3_4:77778295-77778314 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | chr3_4:77778324-77778343 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | chr3_4:77778325-77778344 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | chr3_4:77778340-77778359 | Msa0524290:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | chr3_4:77778390-77778409 | Msa0524290:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | + | chr3_4:77777985-77778004 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | chr3_4:77778138-77778157 | Msa0524290:exon | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | chr3_4:77778142-77778161 | Msa0524290:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | chr3_4:77778151-77778170 | Msa0524290:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | chr3_4:77778201-77778220 | Msa0524290:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | chr3_4:77778202-77778221 | Msa0524290:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | chr3_4:77778203-77778222 | Msa0524290:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | chr3_4:77778238-77778257 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | chr3_4:77778269-77778288 | Msa0524290:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | chr3_4:77778313-77778332 | Msa0524290:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | chr3_4:77778446-77778465 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | chr3_4:77778449-77778468 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | + | chr3_4:77777985-77778004 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | chr3_4:77778138-77778157 | Msa0524290:exon | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | chr3_4:77778142-77778161 | Msa0524290:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | chr3_4:77778151-77778170 | Msa0524290:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | chr3_4:77778201-77778220 | Msa0524290:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | chr3_4:77778202-77778221 | Msa0524290:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | chr3_4:77778203-77778222 | Msa0524290:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | chr3_4:77778238-77778257 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | chr3_4:77778269-77778288 | Msa0524290:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | chr3_4:77778313-77778332 | Msa0524290:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | chr3_4:77778446-77778465 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | chr3_4:77778449-77778468 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | - | chr3_4:77777966-77777985 | Msa0524290:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | chr3_4:77778267-77778286 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | chr3_4:77778431-77778450 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | chr3_4:77778469-77778488 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | chr3_4:77778470-77778489 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | - | chr3_4:77777966-77777985 | Msa0524290:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | chr3_4:77778267-77778286 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | chr3_4:77778431-77778450 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | chr3_4:77778469-77778488 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | chr3_4:77778470-77778489 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | chr3_4:77778257-77778276 | Msa0524290:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | chr3_4:77778258-77778277 | Msa0524290:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | chr3_4:77778304-77778323 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | chr3_4:77778407-77778426 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | chr3_4:77778408-77778427 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | chr3_4:77778428-77778447 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | chr3_4:77778257-77778276 | Msa0524290:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | chr3_4:77778258-77778277 | Msa0524290:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | chr3_4:77778304-77778323 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | chr3_4:77778407-77778426 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | chr3_4:77778408-77778427 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | chr3_4:77778428-77778447 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | chr3_4:77778250-77778269 | Msa0524290:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | chr3_4:77778250-77778269 | Msa0524290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77777858 | 77778772 | 77777858 | ID=Msa0524290;Name=Msa0524290 |
| chr3_4 | mRNA | 77777858 | 77778772 | 77777858 | ID=Msa0524290-mRNA-1;Parent=Msa0524290;Name=Msa0524290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=84|1|1|1|1|1|2|283|156 |
| chr3_4 | exon | 77777858 | 77778533 | 77777858 | ID=Msa0524290-mRNA-1:exon:22820;Parent=Msa0524290-mRNA-1 |
| chr3_4 | exon | 77778611 | 77778772 | 77778611 | ID=Msa0524290-mRNA-1:exon:22819;Parent=Msa0524290-mRNA-1 |
| chr3_4 | five_prime_UTR | 77778689 | 77778772 | 77778689 | ID=Msa0524290-mRNA-1:five_prime_utr;Parent=Msa0524290-mRNA-1 |
| chr3_4 | CDS | 77778611 | 77778688 | 77778611 | ID=Msa0524290-mRNA-1:cds;Parent=Msa0524290-mRNA-1 |
| chr3_4 | CDS | 77778141 | 77778533 | 77778141 | ID=Msa0524290-mRNA-1:cds;Parent=Msa0524290-mRNA-1 |
| chr3_4 | three_prime_UTR | 77777858 | 77778140 | 77777858 | ID=Msa0524290-mRNA-1:three_prime_utr;Parent=Msa0524290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
