Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367490 | XP_003604043.1 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.69e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367490 | sp|Q9SZN7|HIP26_ARATH | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.09e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367490 | G7J8I5 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.29e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118540 | Msa1367490 | 0.807783 | 4.270187e-50 | -8.615850e-47 |
| Msa1358670 | Msa1367490 | 0.810206 | 1.293612e-50 | -8.615850e-47 |
| Msa1364940 | Msa1367490 | 0.992412 | 3.918638e-193 | -8.615850e-47 |
| Msa1367490 | Msa1417570 | 0.969070 | 1.382822e-129 | -8.615850e-47 |
| Msa1367490 | Msa1422810 | 0.833570 | 4.943962e-56 | -8.615850e-47 |
| Msa1367490 | Msa1424620 | 0.997660 | 1.161806e-246 | -8.615850e-47 |
| Msa1367490 | Msa1435520 | 0.943372 | 1.354558e-102 | -8.615850e-47 |
| Msa1367490 | Msa1454950 | 0.841307 | 5.144079e-58 | -8.615850e-47 |
| Msa0605000 | Msa1367490 | 0.802532 | 5.364649e-49 | -8.615850e-47 |
| Msa0609000 | Msa1367490 | 0.809816 | 1.569655e-50 | -8.615850e-47 |
| Msa0618930 | Msa1367490 | 0.809766 | 1.608603e-50 | -8.615850e-47 |
| Msa0643320 | Msa1367490 | 0.847534 | 1.088304e-59 | -8.615850e-47 |
| Msa0661710 | Msa1367490 | 0.814755 | 1.310575e-51 | -8.615850e-47 |
| Msa0683140 | Msa1367490 | 0.859953 | 2.893668e-63 | -8.615850e-47 |
| Msa0683600 | Msa1367490 | 0.856243 | 3.669923e-62 | -8.615850e-47 |
| Msa0719420 | Msa1367490 | 0.818531 | 1.866925e-52 | -8.615850e-47 |
| Msa0772480 | Msa1367490 | 0.803517 | 3.356821e-49 | -8.615850e-47 |
| Msa0784860 | Msa1367490 | 0.804981 | 1.664165e-49 | -8.615850e-47 |
| Msa0789680 | Msa1367490 | 0.819398 | 1.186125e-52 | -8.615850e-47 |
| Msa0798440 | Msa1367490 | 0.803138 | 4.021662e-49 | -8.615850e-47 |
| Msa0802410 | Msa1367490 | 0.809658 | 1.697088e-50 | -8.615850e-47 |
| Msa0186310 | Msa1367490 | 0.833801 | 4.328837e-56 | -8.615850e-47 |
| Msa0189300 | Msa1367490 | 0.817228 | 3.676579e-52 | -8.615850e-47 |
| Msa0227440 | Msa1367490 | 0.800929 | 1.144598e-48 | -8.615850e-47 |
| Msa0231660 | Msa1367490 | 0.828734 | 7.624497e-55 | -8.615850e-47 |
| Msa0386040 | Msa1367490 | 0.845055 | 5.154083e-59 | -8.615850e-47 |
| Msa0387910 | Msa1367490 | 0.834703 | 2.571755e-56 | -8.615850e-47 |
| Msa0421260 | Msa1367490 | 0.816207 | 6.227235e-52 | -8.615850e-47 |
| Msa0436920 | Msa1367490 | -0.823325 | 1.472221e-53 | -8.615850e-47 |
| Msa0467220 | Msa1367490 | 0.839588 | 1.448509e-57 | -8.615850e-47 |
| Msa1088290 | Msa1367490 | 0.840247 | 9.756073e-58 | -8.615850e-47 |
| Msa0251230 | Msa1367490 | 0.814554 | 1.451981e-51 | -8.615850e-47 |
| Msa0271360 | Msa1367490 | 0.824461 | 7.970202e-54 | -8.615850e-47 |
| Msa0310860 | Msa1367490 | 0.800010 | 1.761554e-48 | -8.615850e-47 |
| Msa0335820 | Msa1367490 | -0.805881 | 1.077490e-49 | -8.615850e-47 |
| Msa1120810 | Msa1367490 | 0.802227 | 6.199015e-49 | -8.615850e-47 |
| Msa1125790 | Msa1367490 | -0.806142 | 9.496704e-50 | -8.615850e-47 |
| Msa1133230 | Msa1367490 | 0.824273 | 8.825774e-54 | -8.615850e-47 |
| Msa1133250 | Msa1367490 | 0.826791 | 2.235028e-54 | -8.615850e-47 |
| Msa1178370 | Msa1367490 | 0.801013 | 1.099833e-48 | -8.615850e-47 |
| Msa0524290 | Msa1367490 | 0.993052 | 3.897821e-197 | -8.615850e-47 |
| Msa0524400 | Msa1367490 | 0.990856 | 1.150936e-184 | -8.615850e-47 |
| Msa0545080 | Msa1367490 | 0.813208 | 2.875723e-51 | -8.615850e-47 |
| Msa0602370 | Msa1367490 | 0.852904 | 3.398022e-61 | -8.615850e-47 |
| Msa0951400 | Msa1367490 | 0.816937 | 4.274937e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367490 | MtrunA17_Chr3g0145621 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.48e-116 | 325 |
| Msa1367490 | MtrunA17_Chr4g0036931 | 79.245 | 159 | 27 | 3 | 1 | 156 | 1 | 156 | 1.70e-88 | 254 |
| Msa1367490 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.73e-66 | 197 |
| Msa1367490 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.24e-53 | 166 |
| Msa1367490 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.19e-49 | 155 |
| Msa1367490 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 4.89e-49 | 155 |
| Msa1367490 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.22e-45 | 146 |
| Msa1367490 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 5.20e-45 | 145 |
| Msa1367490 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 6.43e-45 | 145 |
| Msa1367490 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.20e-42 | 138 |
| Msa1367490 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.31e-35 | 118 |
| Msa1367490 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.24e-22 | 86.3 |
| Msa1367490 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.45e-20 | 83.2 |
| Msa1367490 | MtrunA17_Chr6g0471231 | 36.364 | 143 | 70 | 6 | 28 | 156 | 5 | 140 | 3.83e-18 | 75.9 |
| Msa1367490 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 2.98e-14 | 65.5 |
| Msa1367490 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.22e-14 | 67.4 |
| Msa1367490 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 1.95e-12 | 63.5 |
| Msa1367490 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 3.47e-12 | 58.9 |
| Msa1367490 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.05e-12 | 62.4 |
| Msa1367490 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 7.76e-12 | 62.0 |
| Msa1367490 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 1.39e-11 | 58.2 |
| Msa1367490 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.51e-11 | 57.0 |
| Msa1367490 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.83e-11 | 60.5 |
| Msa1367490 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 3.76e-11 | 58.9 |
| Msa1367490 | MtrunA17_Chr7g0263491 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 6.49e-11 | 58.9 |
| Msa1367490 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367490 | AT4G38580.1 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1367490 | AT4G38580.2 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1367490 | AT4G35060.1 | 70.701 | 157 | 41 | 3 | 1 | 156 | 1 | 153 | 1.89e-76 | 224 |
| Msa1367490 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1367490 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1367490 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.48e-58 | 178 |
| Msa1367490 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 9.65e-54 | 167 |
| Msa1367490 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 2.00e-50 | 159 |
| Msa1367490 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.35e-47 | 150 |
| Msa1367490 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.24e-44 | 144 |
| Msa1367490 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.48e-42 | 139 |
| Msa1367490 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.29e-40 | 132 |
| Msa1367490 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.51e-25 | 94.4 |
| Msa1367490 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.89e-24 | 91.7 |
| Msa1367490 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.05e-20 | 82.4 |
| Msa1367490 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.81e-19 | 80.9 |
| Msa1367490 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.57e-18 | 77.8 |
| Msa1367490 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.37e-16 | 71.2 |
| Msa1367490 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.70e-16 | 71.2 |
| Msa1367490 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.26e-15 | 69.7 |
| Msa1367490 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 3.31e-14 | 65.9 |
| Msa1367490 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.07e-13 | 65.1 |
| Msa1367490 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.20e-12 | 60.8 |
| Msa1367490 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1367490 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1367490 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa1367490 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.74e-11 | 61.2 |
| Msa1367490 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.40e-11 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | tig0018513:-147050 | Msa1367490:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | tig0018513:-146409 | Msa1367490:three_prime_UTR |
| TGGTTCACAATTTCATATAA+TGG | 0.261950 | tig0018513:-146327 | Msa1367490:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | tig0018513:-146975 | Msa1367490:intron |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | tig0018513:+146335 | None:intergenic |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | tig0018513:-146777 | Msa1367490:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | tig0018513:+146240 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | tig0018513:+146656 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | tig0018513:-146599 | Msa1367490:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | tig0018513:+146743 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | tig0018513:+147066 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | tig0018513:+146256 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | tig0018513:-146721 | Msa1367490:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | tig0018513:+146798 | None:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | tig0018513:+146619 | None:intergenic |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | tig0018513:-147041 | Msa1367490:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | tig0018513:+146677 | None:intergenic |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | tig0018513:-146481 | Msa1367490:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | tig0018513:+146452 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | tig0018513:+146969 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | tig0018513:+146978 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | tig0018513:+146686 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | tig0018513:-146588 | Msa1367490:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | tig0018513:-146802 | Msa1367490:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | tig0018513:+146979 | None:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | tig0018513:-146776 | Msa1367490:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | tig0018513:-146638 | Msa1367490:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | tig0018513:+146505 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | tig0018513:-146709 | Msa1367490:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | tig0018513:+146394 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | tig0018513:+146657 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | tig0018513:+146991 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | tig0018513:-147049 | Msa1367490:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | tig0018513:+146573 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | tig0018513:-146728 | Msa1367490:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | tig0018513:-146720 | Msa1367490:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | tig0018513:-147010 | Msa1367490:CDS |
| ATAAGGCGATTGCAATGGAA+TGG | 0.537959 | tig0018513:+146273 | None:intergenic |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | tig0018513:-146836 | Msa1367490:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | tig0018513:-146879 | Msa1367490:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | tig0018513:-147007 | Msa1367490:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | tig0018513:+146574 | None:intergenic |
| CAATGATAAGGCGATTGCAA+TGG | 0.559874 | tig0018513:+146268 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | tig0018513:-146827 | Msa1367490:CDS |
| ATTGTGAACCAATAAAAGGT+AGG | 0.592505 | tig0018513:+146339 | None:intergenic |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | tig0018513:-146840 | Msa1367490:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | tig0018513:+146550 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | tig0018513:+146511 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | tig0018513:-146843 | Msa1367490:CDS |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | tig0018513:-146789 | Msa1367490:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | tig0018513:-146847 | Msa1367490:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | tig0018513:+146512 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | tig0018513:+146623 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | tig0018513:-146750 | Msa1367490:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | tig0018513:-146775 | Msa1367490:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | tig0018513:+146553 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | tig0018513:+146508 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | tig0018513:-146665 | Msa1367490:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | tig0018513:-146753 | Msa1367490:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | tig0018513:+146714 | None:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | tig0018513:-146869 | Msa1367490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | + | tig0018513:146416-146435 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | - | tig0018513:146452-146471 | Msa1367490:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | tig0018513:146871-146890 | Msa1367490:CDS | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | + | tig0018513:146416-146435 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | - | tig0018513:146452-146471 | Msa1367490:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | tig0018513:146871-146890 | Msa1367490:CDS | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | tig0018513:146302-146321 | Msa1367490:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | tig0018513:146303-146322 | Msa1367490:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | tig0018513:146961-146980 | None:intergenic | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | tig0018513:146302-146321 | Msa1367490:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | tig0018513:146303-146322 | Msa1367490:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | tig0018513:146961-146980 | None:intergenic | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | tig0018513:146289-146308 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | tig0018513:146411-146430 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | tig0018513:146903-146922 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | tig0018513:146901-146920 | Msa1367490:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | tig0018513:146943-146962 | Msa1367490:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | tig0018513:147020-147039 | None:intergenic | 25.0% |
| ! | TGGTTCACAATTTCATATAA+TGG | - | tig0018513:147025-147044 | Msa1367490:CDS | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | tig0018513:147115-147134 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | tig0018513:146289-146308 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | tig0018513:146411-146430 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | tig0018513:146903-146922 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | tig0018513:146901-146920 | Msa1367490:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | tig0018513:146943-146962 | Msa1367490:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | tig0018513:147020-147039 | None:intergenic | 25.0% |
| ! | TGGTTCACAATTTCATATAA+TGG | - | tig0018513:147025-147044 | Msa1367490:CDS | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | tig0018513:147115-147134 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | + | tig0018513:146386-146405 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | tig0018513:146455-146474 | Msa1367490:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | tig0018513:146550-146569 | Msa1367490:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | tig0018513:146557-146576 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | tig0018513:146736-146755 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | tig0018513:146907-146926 | Msa1367490:intron | 30.0% |
| ATTGTGAACCAATAAAAGGT+AGG | + | tig0018513:147016-147035 | None:intergenic | 30.0% | |
| TCTTCGGAAAATCAATGATA+AGG | + | tig0018513:147099-147118 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | + | tig0018513:146386-146405 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | tig0018513:146455-146474 | Msa1367490:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | tig0018513:146550-146569 | Msa1367490:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | tig0018513:146557-146576 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | tig0018513:146736-146755 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | tig0018513:146907-146926 | Msa1367490:intron | 30.0% |
| ATTGTGAACCAATAAAAGGT+AGG | + | tig0018513:147016-147035 | None:intergenic | 30.0% | |
| TCTTCGGAAAATCAATGATA+AGG | + | tig0018513:147099-147118 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | + | tig0018513:146376-146395 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | tig0018513:146563-146582 | Msa1367490:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | tig0018513:146599-146618 | Msa1367490:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | tig0018513:146732-146751 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | tig0018513:146753-146772 | Msa1367490:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | tig0018513:146850-146869 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | - | tig0018513:146988-147007 | Msa1367490:CDS | 35.0% | |
| ! | AGTAGGTTCCTACCTTTTAT+TGG | - | tig0018513:147005-147024 | Msa1367490:CDS | 35.0% |
| AAATTGTTTGCGGTGTTTGT+GGG | + | tig0018513:146376-146395 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | tig0018513:146563-146582 | Msa1367490:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | tig0018513:146599-146618 | Msa1367490:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | tig0018513:146732-146751 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | tig0018513:146753-146772 | Msa1367490:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | tig0018513:146850-146869 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | - | tig0018513:146988-147007 | Msa1367490:CDS | 35.0% | |
| ! | AGTAGGTTCCTACCTTTTAT+TGG | - | tig0018513:147005-147024 | Msa1367490:CDS | 35.0% |
| AAGAGATAATATGGGTGCTC+TGG | - | tig0018513:146311-146330 | Msa1367490:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | tig0018513:146377-146396 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | tig0018513:146377-146396 | Msa1367490:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | tig0018513:146602-146621 | Msa1367490:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | tig0018513:146847-146866 | None:intergenic | 40.0% | |
| ATAAGGCGATTGCAATGGAA+TGG | + | tig0018513:147082-147101 | None:intergenic | 40.0% | |
| CAATGATAAGGCGATTGCAA+TGG | + | tig0018513:147087-147106 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | - | tig0018513:146311-146330 | Msa1367490:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | tig0018513:146377-146396 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | tig0018513:146377-146396 | Msa1367490:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | tig0018513:146602-146621 | Msa1367490:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | tig0018513:146847-146866 | None:intergenic | 40.0% | |
| ATAAGGCGATTGCAATGGAA+TGG | + | tig0018513:147082-147101 | None:intergenic | 40.0% | |
| CAATGATAAGGCGATTGCAA+TGG | + | tig0018513:147087-147106 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | tig0018513:146342-146361 | Msa1367490:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | tig0018513:146473-146492 | Msa1367490:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | tig0018513:146483-146502 | Msa1367490:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | tig0018513:146505-146524 | Msa1367490:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | tig0018513:146509-146528 | Msa1367490:exon | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | tig0018513:146669-146688 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | tig0018513:146698-146717 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | tig0018513:146699-146718 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | tig0018513:146714-146733 | Msa1367490:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | tig0018513:146764-146783 | Msa1367490:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | tig0018513:146342-146361 | Msa1367490:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | tig0018513:146473-146492 | Msa1367490:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | tig0018513:146483-146502 | Msa1367490:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | tig0018513:146505-146524 | Msa1367490:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | tig0018513:146509-146528 | Msa1367490:exon | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | tig0018513:146669-146688 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | tig0018513:146698-146717 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | tig0018513:146699-146718 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | tig0018513:146714-146733 | Msa1367490:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | tig0018513:146764-146783 | Msa1367490:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | + | tig0018513:146364-146383 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | tig0018513:146512-146531 | Msa1367490:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | tig0018513:146516-146535 | Msa1367490:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | tig0018513:146525-146544 | Msa1367490:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | tig0018513:146575-146594 | Msa1367490:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | tig0018513:146576-146595 | Msa1367490:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | tig0018513:146577-146596 | Msa1367490:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | tig0018513:146612-146631 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | tig0018513:146643-146662 | Msa1367490:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | tig0018513:146687-146706 | Msa1367490:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | tig0018513:146820-146839 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | tig0018513:146823-146842 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | + | tig0018513:146364-146383 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | tig0018513:146512-146531 | Msa1367490:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | tig0018513:146516-146535 | Msa1367490:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | tig0018513:146525-146544 | Msa1367490:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | tig0018513:146575-146594 | Msa1367490:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | tig0018513:146576-146595 | Msa1367490:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | tig0018513:146577-146596 | Msa1367490:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | tig0018513:146612-146631 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | tig0018513:146643-146662 | Msa1367490:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | tig0018513:146687-146706 | Msa1367490:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | tig0018513:146820-146839 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | tig0018513:146823-146842 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | - | tig0018513:146345-146364 | Msa1367490:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | tig0018513:146641-146660 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | tig0018513:146805-146824 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | tig0018513:146843-146862 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | tig0018513:146844-146863 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | - | tig0018513:146345-146364 | Msa1367490:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | tig0018513:146641-146660 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | tig0018513:146805-146824 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | tig0018513:146843-146862 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | tig0018513:146844-146863 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | tig0018513:146631-146650 | Msa1367490:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | tig0018513:146632-146651 | Msa1367490:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | tig0018513:146678-146697 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | tig0018513:146781-146800 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | tig0018513:146782-146801 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | tig0018513:146802-146821 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | tig0018513:146631-146650 | Msa1367490:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | tig0018513:146632-146651 | Msa1367490:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | tig0018513:146678-146697 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | tig0018513:146781-146800 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | tig0018513:146782-146801 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | tig0018513:146802-146821 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | tig0018513:146624-146643 | Msa1367490:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | tig0018513:146624-146643 | Msa1367490:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018513 | gene | 146232 | 147142 | 146232 | ID=Msa1367490;Name=Msa1367490 |
| tig0018513 | mRNA | 146232 | 147142 | 146232 | ID=Msa1367490-mRNA-1;Parent=Msa1367490;Name=Msa1367490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=89|1|1|1|1|1|2|279|156 |
| tig0018513 | exon | 146232 | 146903 | 146232 | ID=Msa1367490-mRNA-1:exon:15614;Parent=Msa1367490-mRNA-1 |
| tig0018513 | exon | 146976 | 147142 | 146976 | ID=Msa1367490-mRNA-1:exon:15613;Parent=Msa1367490-mRNA-1 |
| tig0018513 | five_prime_UTR | 147054 | 147142 | 147054 | ID=Msa1367490-mRNA-1:five_prime_utr;Parent=Msa1367490-mRNA-1 |
| tig0018513 | CDS | 146976 | 147053 | 146976 | ID=Msa1367490-mRNA-1:cds;Parent=Msa1367490-mRNA-1 |
| tig0018513 | CDS | 146511 | 146903 | 146511 | ID=Msa1367490-mRNA-1:cds;Parent=Msa1367490-mRNA-1 |
| tig0018513 | three_prime_UTR | 146232 | 146510 | 146232 | ID=Msa1367490-mRNA-1:three_prime_utr;Parent=Msa1367490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
