AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0229710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229710 MtrunA17_Chr3g0120761 99.261 541 3 1 1 540 1 541 0.0 1100
Msa0229710 MtrunA17_Chr1g0186821 78.399 537 113 2 5 540 4 538 0.0 880
Msa0229710 MtrunA17_Chr1g0183921 76.392 521 120 1 1 521 1 518 0.0 840
Msa0229710 MtrunA17_Chr1g0167731 77.927 521 114 1 5 524 4 524 0.0 830
Msa0229710 MtrunA17_Chr1g0167741 77.778 522 115 1 5 525 4 525 0.0 829
Msa0229710 MtrunA17_Chr7g0261231 74.954 539 131 2 1 538 1 536 0.0 827
Msa0229710 MtrunA17_Chr1g0167761 76.792 530 120 2 5 533 4 531 0.0 826
Msa0229710 MtrunA17_Chr7g0261241 76.394 538 122 1 1 538 1 533 0.0 821
Msa0229710 MtrunA17_Chr1g0186831 74.125 514 116 3 1 511 1 500 0.0 786
Msa0229710 MtrunA17_Chr1g0183911 69.216 536 162 2 1 536 1 533 0.0 775
Msa0229710 MtrunA17_Chr5g0428481 60.036 548 190 6 7 537 6 541 0.0 641
Msa0229710 MtrunA17_Chr1g0158991 59.887 531 200 3 6 536 3 520 0.0 633
Msa0229710 MtrunA17_Chr4g0043571 55.179 531 214 12 1 526 1 512 0.0 533
Msa0229710 MtrunA17_Chr4g0021771 24.503 453 282 15 76 519 104 505 2.11e-15 79.0
Msa0229710 MtrunA17_Chr1g0213631 23.673 452 250 18 90 515 47 429 7.77e-15 77.0
Msa0229710 MtrunA17_Chr2g0282031 23.909 481 276 19 76 530 102 518 6.61e-14 74.3
Msa0229710 MtrunA17_Chr6g0485661 24.708 514 315 20 13 510 45 502 7.52e-12 67.8
Msa0229710 MtrunA17_Chr7g0214451 21.689 438 281 15 87 515 92 476 1.23e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0229710 AT2G32830.1 76.568 542 125 2 1 540 1 542 0.0 864
Msa0229710 AT3G54700.2 78.585 523 106 2 1 522 1 518 0.0 857
Msa0229710 AT3G54700.1 78.585 523 106 2 1 522 1 518 0.0 857
Msa0229710 AT2G38940.1 78.101 516 113 0 1 516 1 516 0.0 856
Msa0229710 AT5G43350.1 76.145 524 124 1 1 524 1 523 0.0 839
Msa0229710 AT5G43360.1 75.862 522 125 1 1 522 1 521 0.0 834
Msa0229710 AT5G43370.1 75.763 524 126 1 1 524 1 523 0.0 804
Msa0229710 AT5G43370.2 75.763 524 126 1 1 524 1 523 0.0 804
Msa0229710 AT5G43340.1 64.650 529 172 3 1 528 1 515 0.0 715
Msa0229710 AT1G20860.1 49.346 535 253 9 6 533 3 526 1.54e-174 503
Msa0229710 AT1G20860.2 49.346 535 253 9 6 533 55 578 4.12e-174 504
Msa0229710 AT1G76430.1 48.956 527 243 11 5 521 3 513 1.12e-170 494
Msa0229710 AT4G08878.1 65.385 260 88 1 31 290 13 270 5.65e-112 334
Msa0229710 AT4G08895.1 50.714 140 37 1 321 460 23 130 2.18e-43 152

Find 111 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTTTCTTTAGATTT+TGG 0.112713 2_2:-1540394 Msa0229710:CDS
CCAATTGAGTCTTTGGTATT+TGG 0.161961 2_2:+1540825 None:intergenic
CACCATATGTATTACTATTA+TGG 0.179596 2_2:+1538813 None:intergenic
TGGTCTAACTCTTGCTCTTA+TGG 0.192232 2_2:-1540477 Msa0229710:CDS
TATGCAAGGGTTTGGAATTT+TGG 0.193186 2_2:-1540270 Msa0229710:CDS
CTTGCTTCTGGCCTTTCTTT+TGG 0.201610 2_2:-1540443 Msa0229710:CDS
ACAACAAAAGTGGTTGAATT+TGG 0.258019 2_2:+1539384 None:intergenic
TGGTTGGCTTGGGGACAAAA+TGG 0.266103 2_2:-1540516 Msa0229710:CDS
GTATTCTCCTCTCTTGCTTC+TGG 0.282043 2_2:-1540455 Msa0229710:CDS
ATGTTACACATTGCACACTA+TGG 0.296577 2_2:+1538910 None:intergenic
AGCACTTTGTGGAACTGTTC+CGG 0.298632 2_2:-1539592 Msa0229710:CDS
AGTCACCACTAATTGGTCTT+TGG 0.300566 2_2:-1540860 Msa0229710:five_prime_UTR
TACCAGAAGCTGATTATGTT+TGG 0.328852 2_2:-1540157 Msa0229710:CDS
GTGGAACTGTTCCGGGATAC+TGG 0.329105 2_2:-1539584 Msa0229710:CDS
ATTAGTGGTGACTATAATTC+TGG 0.333145 2_2:+1540870 None:intergenic
TGGAGAATCATTCTCATGTT+TGG 0.337056 2_2:-1540137 Msa0229710:CDS
GGAGCTATTATAGGTGCATT+TGG 0.340643 2_2:-1539291 Msa0229710:CDS
CCAAGTAACTTGGTGACATT+TGG 0.341844 2_2:+1540653 None:intergenic
ATTTAGCATGAACATATAAA+AGG 0.342747 2_2:+1538732 None:intergenic
GGAGTGACCAATTGAGTCTT+TGG 0.348393 2_2:+1540818 None:intergenic
GGACATGTCAAGTGTGTTAC+AGG 0.350706 2_2:-1539880 Msa0229710:CDS
GCACTTTGTGGAACTGTTCC+GGG 0.351063 2_2:-1539591 Msa0229710:CDS
AAAGTGATATAAGTTTAGTT+TGG 0.352913 2_2:-1538857 Msa0229710:three_prime_UTR
CTCCAAACATAATCAGCTTC+TGG 0.355251 2_2:+1540155 None:intergenic
TTTACTGCTGCTGATACATT+TGG 0.358950 2_2:+1540581 None:intergenic
GGGAAAGCTGGAGCTATTAT+AGG 0.362181 2_2:-1539300 Msa0229710:CDS
GCTGCAGCGTCAACTTTATA+AGG 0.364153 2_2:+1540188 None:intergenic
ACTAAAAGAGAAAACAGAAT+TGG 0.370784 2_2:-1539453 Msa0229710:CDS
ACATTTGGAGGCAAAGTTCC+AGG 0.372446 2_2:+1540596 None:intergenic
CCAAATGTCACCAAGTTACT+TGG 0.375080 2_2:-1540653 Msa0229710:CDS
TTTCTTGTGCCAGAAGCTAA+TGG 0.378357 2_2:-1539144 Msa0229710:CDS
CTTGCTGTGGTTAATTGTCT+TGG 0.380235 2_2:-1539180 Msa0229710:CDS
CTGCTGGTTTAACTTACTAT+TGG 0.383547 2_2:-1540106 Msa0229710:CDS
GTGCAAGACAAGAACAGTTT+TGG 0.383566 2_2:-1539816 Msa0229710:CDS
CACTCAGCAAAGGGTACAAT+TGG 0.385896 2_2:-1540419 Msa0229710:CDS
GCAGGGTACCCTGCTGGTAT+TGG 0.388751 2_2:-1539225 Msa0229710:CDS
GAAATGGTACCATTGTGTTT+TGG 0.389577 2_2:+1540736 None:intergenic
TTCACAGCCATCATAATTGC+TGG 0.392806 2_2:-1540716 Msa0229710:CDS
GAATTATAGTCACCACTAAT+TGG 0.397732 2_2:-1540867 Msa0229710:five_prime_UTR
AATGTATCAGCAGCAGTAAA+TGG 0.399626 2_2:-1540578 Msa0229710:CDS
TCCTCTGCAGCAGGGAAAGC+TGG 0.401210 2_2:-1539312 Msa0229710:CDS
AAAAGTTTACCTTGCTGTCT+CGG 0.405238 2_2:+1540070 None:intergenic
ATCAACAAGCCTCTTCTAAT+AGG 0.408237 2_2:-1539059 Msa0229710:CDS
AGCCATCATAATTGCTGGTA+TGG 0.413402 2_2:-1540711 Msa0229710:CDS
GCTCTTTGTGGCACTCTAGC+AGG 0.420937 2_2:-1540551 Msa0229710:CDS
CCAAATACCAAAGACTCAAT+TGG 0.429645 2_2:-1540825 Msa0229710:five_prime_UTR
AGAAGCTAATGGAAAATCAT+TGG 0.433339 2_2:-1539133 Msa0229710:CDS
TCGTGGCGCGTTTATAGCTT+CGG 0.447395 2_2:-1540300 Msa0229710:CDS
ATGTTTGGCGCTGTTCCTGC+TGG 0.448854 2_2:-1540122 Msa0229710:CDS
AAAGTTTACCTTGCTGTCTC+GGG 0.450939 2_2:+1540071 None:intergenic
CTCCATAATAGTAATACATA+TGG 0.452001 2_2:-1538815 Msa0229710:three_prime_UTR
TAAAAGGTAGAGGAAGGATT+AGG 0.452326 2_2:+1538748 None:intergenic
TGACATTTGGTATGCAGAAA+AGG 0.456001 2_2:+1540666 None:intergenic
GGTTGGCTTGGGGACAAAAT+GGG 0.456779 2_2:-1540515 Msa0229710:CDS
GTAAATGGTGTTGCTCTTTG+TGG 0.464585 2_2:-1540563 Msa0229710:CDS
GTTCCAGGCTTGAGTGCACC+TGG 0.466167 2_2:+1540611 None:intergenic
ACAACGCTTATAGCACTTTG+TGG 0.467494 2_2:-1539603 Msa0229710:CDS
TTCTTCATTCCAATACCAGC+AGG 0.476749 2_2:+1539216 None:intergenic
ACTGCTGCTGATACATTTGG+AGG 0.480011 2_2:+1540584 None:intergenic
CACCCAGGTGCACTCAAGCC+TGG 0.480902 2_2:-1540614 Msa0229710:CDS
CAAGCCAACCAAAGAAAAGT+TGG 0.491977 2_2:+1540528 None:intergenic
TGTTACACATTGCACACTAT+GGG 0.501162 2_2:+1538911 None:intergenic
TCGCTATTCCGTATGATCAT+TGG 0.501987 2_2:-1539476 Msa0229710:CDS
AAAGATATTTATAGTAGTAT+CGG 0.503148 2_2:-1539687 Msa0229710:CDS
CATGGTATATCCTCTGCAGC+AGG 0.519226 2_2:-1539321 Msa0229710:CDS
CTTGTATGCTTCACAAAGCA+AGG 0.520337 2_2:-1539265 Msa0229710:CDS
AGAAAGGCCAGAAGCAAGAG+AGG 0.521035 2_2:+1540448 None:intergenic
CAATTATGATGGCTGTGAAA+TGG 0.521173 2_2:+1540720 None:intergenic
GTATATTCTTCCAAGTAACT+TGG 0.522891 2_2:+1540643 None:intergenic
GACATAATAGTAGCTGAAAG+AGG 0.523195 2_2:+1540344 None:intergenic
GTGCTCCAAAGACCAATTAG+TGG 0.526647 2_2:+1540855 None:intergenic
CATGTAGACCTCAACCTAGC+CGG 0.533609 2_2:+1539345 None:intergenic
GAATGCAAAACAAGCAGCGC+AGG 0.534610 2_2:-1539901 Msa0229710:CDS
GCCATCATAATTGCTGGTAT+GGG 0.536058 2_2:-1540710 Msa0229710:CDS
CATGAACATATAAAAGGTAG+AGG 0.538815 2_2:+1538738 None:intergenic
TTGCTGAGTGACCAAAAGAA+AGG 0.540760 2_2:+1540432 None:intergenic
ATGTAGACCTCAACCTAGCC+GGG 0.545552 2_2:+1539346 None:intergenic
TGCTTGGAACAACTTCCACT+TGG 0.545836 2_2:-1539752 Msa0229710:CDS
AGAGATGCAGGGTACCCTGC+TGG 0.548047 2_2:-1539231 Msa0229710:CDS
TAGTATCGGTTGGCTTCCAC+CGG 0.550442 2_2:-1539673 Msa0229710:CDS
TCCCATACCAGCAATTATGA+TGG 0.555478 2_2:+1540709 None:intergenic
AGACACGGTCTTCATCTGCT+TGG 0.560681 2_2:-1539768 Msa0229710:CDS
AACATATAAAAGGTAGAGGA+AGG 0.561535 2_2:+1538742 None:intergenic
CTCGGCAGGCACAACAAAAG+TGG 0.561882 2_2:+1539374 None:intergenic
GCCACCGTGAACCAGTATCC+CGG 0.570413 2_2:+1539573 None:intergenic
CAATAGTAAGTTAAACCAGC+AGG 0.570890 2_2:+1540107 None:intergenic
ATATTTATAGTAGTATCGGT+TGG 0.576691 2_2:-1539683 Msa0229710:CDS
TGTTCCGGGATACTGGTTCA+CGG 0.578109 2_2:-1539577 Msa0229710:CDS
CTAGCCGGGAAAATCTCGGC+AGG 0.590971 2_2:+1539360 None:intergenic
CAACCTAGCCGGGAAAATCT+CGG 0.596897 2_2:+1539356 None:intergenic
TGATGTATTACTATTACCAA+TGG 0.600076 2_2:-1539024 Msa0229710:three_prime_UTR
AGGTTGAGGTCTACATGTCA+TGG 0.608393 2_2:-1539339 Msa0229710:CDS
TCCAGCTTTCCCTGCTGCAG+AGG 0.609930 2_2:+1539311 None:intergenic
ACATAATAGTAGCTGAAAGA+GGG 0.611460 2_2:+1540345 None:intergenic
TGAAAATGCCCGAGACAGCA+AGG 0.612569 2_2:-1540079 Msa0229710:intron
ATTGCATTCATATCTTGTGC+CGG 0.613095 2_2:+1539654 None:intergenic
AAATCATTGGAAGAAATGAG+TGG 0.620125 2_2:-1539120 Msa0229710:CDS
AGGAACAGTCCTATTAGAAG+AGG 0.629387 2_2:+1539050 None:intergenic
GCATTCATATCTTGTGCCGG+TGG 0.633100 2_2:+1539657 None:intergenic
CATATGTATTACTATTATGG+AGG 0.639839 2_2:+1538816 None:intergenic
ATGGTATATCCTCTGCAGCA+GGG 0.647894 2_2:-1539320 Msa0229710:CDS
TTCCAGGCTTGAGTGCACCT+GGG 0.648892 2_2:+1540612 None:intergenic
AAGGAGTTTCTTAGAAGACA+CGG 0.654294 2_2:-1539783 Msa0229710:CDS
GCAGCGTCAACTTTATAAGG+CGG 0.662919 2_2:+1540191 None:intergenic
ATCATGGCTCGTGAACAACT+AGG 0.672656 2_2:-1540782 Msa0229710:CDS
AGAATATACTACACACACCC+AGG 0.681223 2_2:-1540629 Msa0229710:CDS
TCTTCATTCCAATACCAGCA+GGG 0.696508 2_2:+1539217 None:intergenic
TTGATGCAGCCAAAACACAA+TGG 0.702246 2_2:-1540745 Msa0229710:CDS
AATATCGAGAAGAAACCAAG+TGG 0.702390 2_2:+1539737 None:intergenic
GTAATAGTAATACATCACAC+AGG 0.741588 2_2:+1539030 None:intergenic
TCCGGGATACTGGTTCACGG+TGG 0.750080 2_2:-1539574 Msa0229710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATATTTATAGTAGTAT+CGG - chr2_2:1539903-1539922 Msa0229710:CDS 15.0%
!! AAAGATATTTATAGTAGTAT+CGG - chr2_2:1539903-1539922 Msa0229710:CDS 15.0%
!!! ACTTTTTTCTTTGCAAATTT+TGG - chr2_2:1540182-1540201 Msa0229710:CDS 20.0%
!! AAATTCTTGTAAAAAACCAT+TGG + chr2_2:1540585-1540604 None:intergenic 20.0%
!! AAAGTGATATAAGTTTAGTT+TGG - chr2_2:1540733-1540752 Msa0229710:CDS 20.0%
!! ATTTAGCATGAACATATAAA+AGG + chr2_2:1540861-1540880 None:intergenic 20.0%
!!! ACTTTTTTCTTTGCAAATTT+TGG - chr2_2:1540182-1540201 Msa0229710:CDS 20.0%
!! AAATTCTTGTAAAAAACCAT+TGG + chr2_2:1540585-1540604 None:intergenic 20.0%
!! AAAGTGATATAAGTTTAGTT+TGG - chr2_2:1540733-1540752 Msa0229710:CDS 20.0%
!! ATTTAGCATGAACATATAAA+AGG + chr2_2:1540861-1540880 None:intergenic 20.0%
! ATGGGAAGAAAAAAAGTTTA+TGG - chr2_2:1539093-1539112 Msa0229710:CDS 25.0%
!!! CTCTTTGTTTCTTTAGATTT+TGG - chr2_2:1539196-1539215 Msa0229710:CDS 25.0%
! ACTACTAAATCACTAACATT+TGG + chr2_2:1539556-1539575 None:intergenic 25.0%
!!! ATATTTATAGTAGTATCGGT+TGG - chr2_2:1539907-1539926 Msa0229710:CDS 25.0%
! ACTAAAAGAGAAAACAGAAT+TGG - chr2_2:1540137-1540156 Msa0229710:CDS 25.0%
! TGATGTATTACTATTACCAA+TGG - chr2_2:1540566-1540585 Msa0229710:CDS 25.0%
! TGTCATAAAAATTGCACAAA+AGG - chr2_2:1540650-1540669 Msa0229710:CDS 25.0%
! CATATGTATTACTATTATGG+AGG + chr2_2:1540777-1540796 None:intergenic 25.0%
! CTCCATAATAGTAATACATA+TGG - chr2_2:1540775-1540794 Msa0229710:CDS 25.0%
! CACCATATGTATTACTATTA+TGG + chr2_2:1540780-1540799 None:intergenic 25.0%
!!! ATTAGGACTTTTTTTCTAAC+AGG + chr2_2:1540828-1540847 None:intergenic 25.0%
! ATGGGAAGAAAAAAAGTTTA+TGG - chr2_2:1539093-1539112 Msa0229710:CDS 25.0%
!!! CTCTTTGTTTCTTTAGATTT+TGG - chr2_2:1539196-1539215 Msa0229710:CDS 25.0%
! ACTACTAAATCACTAACATT+TGG + chr2_2:1539556-1539575 None:intergenic 25.0%
!!! ATATTTATAGTAGTATCGGT+TGG - chr2_2:1539907-1539926 Msa0229710:CDS 25.0%
! ACTAAAAGAGAAAACAGAAT+TGG - chr2_2:1540137-1540156 Msa0229710:CDS 25.0%
! TGATGTATTACTATTACCAA+TGG - chr2_2:1540566-1540585 Msa0229710:CDS 25.0%
! TGTCATAAAAATTGCACAAA+AGG - chr2_2:1540650-1540669 Msa0229710:CDS 25.0%
! CATATGTATTACTATTATGG+AGG + chr2_2:1540777-1540796 None:intergenic 25.0%
! CTCCATAATAGTAATACATA+TGG - chr2_2:1540775-1540794 Msa0229710:CDS 25.0%
! CACCATATGTATTACTATTA+TGG + chr2_2:1540780-1540799 None:intergenic 25.0%
!!! ATTAGGACTTTTTTTCTAAC+AGG + chr2_2:1540828-1540847 None:intergenic 25.0%
GAATTATAGTCACCACTAAT+TGG - chr2_2:1538723-1538742 Msa0229710:three_prime_UTR 30.0%
TCCACCTTAAAAATCTATCA+TGG - chr2_2:1538792-1538811 Msa0229710:three_prime_UTR 30.0%
GTATATTCTTCCAAGTAACT+TGG + chr2_2:1538950-1538969 None:intergenic 30.0%
!!! TGTTTCTTTAGATTTTGGCT+AGG - chr2_2:1539201-1539220 Msa0229710:CDS 30.0%
!!! TTTAGATTTTGGCTAGGTTT+TGG - chr2_2:1539207-1539226 Msa0229710:CDS 30.0%
ACATAATAGTAGCTGAAAGA+GGG + chr2_2:1539248-1539267 None:intergenic 30.0%
! TGCTTTTGATCATGCTTTTA+AGG - chr2_2:1539374-1539393 Msa0229710:CDS 30.0%
ACCTATATAGATAAGTAGCT+CGG + chr2_2:1539650-1539669 None:intergenic 30.0%
CAAGAAAAAGTAGACAAGAT+AGG - chr2_2:1539750-1539769 Msa0229710:CDS 30.0%
! TCGTTTTGCAATTCAACTAA+TGG - chr2_2:1540058-1540077 Msa0229710:intron 30.0%
! CGTTTTGCAATTCAACTAAT+GGG - chr2_2:1540059-1540078 Msa0229710:intron 30.0%
! CTTTTAGTCCAATGATCATA+CGG + chr2_2:1540125-1540144 None:intergenic 30.0%
ACAACAAAAGTGGTTGAATT+TGG + chr2_2:1540209-1540228 None:intergenic 30.0%
!! AATGATTTTCCATTAGCTTC+TGG + chr2_2:1540458-1540477 None:intergenic 30.0%
AGAAGCTAATGGAAAATCAT+TGG - chr2_2:1540457-1540476 Msa0229710:CDS 30.0%
AAATCATTGGAAGAAATGAG+TGG - chr2_2:1540470-1540489 Msa0229710:CDS 30.0%
GTAATAGTAATACATCACAC+AGG + chr2_2:1540563-1540582 None:intergenic 30.0%
AACATATAAAAGGTAGAGGA+AGG + chr2_2:1540851-1540870 None:intergenic 30.0%
CATGAACATATAAAAGGTAG+AGG + chr2_2:1540855-1540874 None:intergenic 30.0%
GAATTATAGTCACCACTAAT+TGG - chr2_2:1538723-1538742 Msa0229710:three_prime_UTR 30.0%
TCCACCTTAAAAATCTATCA+TGG - chr2_2:1538792-1538811 Msa0229710:three_prime_UTR 30.0%
GTATATTCTTCCAAGTAACT+TGG + chr2_2:1538950-1538969 None:intergenic 30.0%
!!! TGTTTCTTTAGATTTTGGCT+AGG - chr2_2:1539201-1539220 Msa0229710:CDS 30.0%
!!! TTTAGATTTTGGCTAGGTTT+TGG - chr2_2:1539207-1539226 Msa0229710:CDS 30.0%
ACATAATAGTAGCTGAAAGA+GGG + chr2_2:1539248-1539267 None:intergenic 30.0%
! TGCTTTTGATCATGCTTTTA+AGG - chr2_2:1539374-1539393 Msa0229710:CDS 30.0%
ACCTATATAGATAAGTAGCT+CGG + chr2_2:1539650-1539669 None:intergenic 30.0%
CAAGAAAAAGTAGACAAGAT+AGG - chr2_2:1539750-1539769 Msa0229710:CDS 30.0%
! TCGTTTTGCAATTCAACTAA+TGG - chr2_2:1540058-1540077 Msa0229710:intron 30.0%
! CGTTTTGCAATTCAACTAAT+GGG - chr2_2:1540059-1540078 Msa0229710:intron 30.0%
! CTTTTAGTCCAATGATCATA+CGG + chr2_2:1540125-1540144 None:intergenic 30.0%
ACAACAAAAGTGGTTGAATT+TGG + chr2_2:1540209-1540228 None:intergenic 30.0%
!! AATGATTTTCCATTAGCTTC+TGG + chr2_2:1540458-1540477 None:intergenic 30.0%
AGAAGCTAATGGAAAATCAT+TGG - chr2_2:1540457-1540476 Msa0229710:CDS 30.0%
AAATCATTGGAAGAAATGAG+TGG - chr2_2:1540470-1540489 Msa0229710:CDS 30.0%
GTAATAGTAATACATCACAC+AGG + chr2_2:1540563-1540582 None:intergenic 30.0%
AACATATAAAAGGTAGAGGA+AGG + chr2_2:1540851-1540870 None:intergenic 30.0%
CATGAACATATAAAAGGTAG+AGG + chr2_2:1540855-1540874 None:intergenic 30.0%
CCAATTGAGTCTTTGGTATT+TGG + chr2_2:1538768-1538787 None:intergenic 35.0%
CCAAATACCAAAGACTCAAT+TGG - chr2_2:1538765-1538784 Msa0229710:three_prime_UTR 35.0%
!! GCCATGATAGATTTTTAAGG+TGG + chr2_2:1538796-1538815 None:intergenic 35.0%
! CGAGCCATGATAGATTTTTA+AGG + chr2_2:1538799-1538818 None:intergenic 35.0%
! GAAATGGTACCATTGTGTTT+TGG + chr2_2:1538857-1538876 None:intergenic 35.0%
CAATTATGATGGCTGTGAAA+TGG + chr2_2:1538873-1538892 None:intergenic 35.0%
TGACATTTGGTATGCAGAAA+AGG + chr2_2:1538927-1538946 None:intergenic 35.0%
TTTACTGCTGCTGATACATT+TGG + chr2_2:1539012-1539031 None:intergenic 35.0%
AATGTATCAGCAGCAGTAAA+TGG - chr2_2:1539012-1539031 Msa0229710:three_prime_UTR 35.0%
!!! AACTTTTCTTTGGTTGGCTT+GGG - chr2_2:1539064-1539083 Msa0229710:CDS 35.0%
!! TTTTGGCTAGGTTTTGGTAT+TGG - chr2_2:1539213-1539232 Msa0229710:CDS 35.0%
GACATAATAGTAGCTGAAAG+AGG + chr2_2:1539249-1539268 None:intergenic 35.0%
TATGCTAACAAAAAGACTCG+TGG - chr2_2:1539273-1539292 Msa0229710:CDS 35.0%
!! TATGCAAGGGTTTGGAATTT+TGG - chr2_2:1539320-1539339 Msa0229710:CDS 35.0%
TACCAGAAGCTGATTATGTT+TGG - chr2_2:1539433-1539452 Msa0229710:CDS 35.0%
TGGAGAATCATTCTCATGTT+TGG - chr2_2:1539453-1539472 Msa0229710:CDS 35.0%
CAATAGTAAGTTAAACCAGC+AGG + chr2_2:1539486-1539505 None:intergenic 35.0%
!! CTGCTGGTTTAACTTACTAT+TGG - chr2_2:1539484-1539503 Msa0229710:CDS 35.0%
! AAAAGTTTACCTTGCTGTCT+CGG + chr2_2:1539523-1539542 None:intergenic 35.0%
ACCGAGCTACTTATCTATAT+AGG - chr2_2:1539646-1539665 Msa0229710:CDS 35.0%
!! CAGTTTTGGTCTGTTTAGTA+AGG - chr2_2:1539788-1539807 Msa0229710:CDS 35.0%
AAGGAGTTTCTTAGAAGACA+CGG - chr2_2:1539807-1539826 Msa0229710:CDS 35.0%
AATATCGAGAAGAAACCAAG+TGG + chr2_2:1539856-1539875 None:intergenic 35.0%
ATTGCATTCATATCTTGTGC+CGG + chr2_2:1539939-1539958 None:intergenic 35.0%
! GTGGCTTTTATCGATGTTAT+TGG - chr2_2:1540035-1540054 Msa0229710:intron 35.0%
ATCCAAAAAAGAGAGATGCA+GGG - chr2_2:1540348-1540367 Msa0229710:CDS 35.0%
ATCAACAAGCCTCTTCTAAT+AGG - chr2_2:1540531-1540550 Msa0229710:CDS 35.0%
TGTTACACATTGCACACTAT+GGG + chr2_2:1540682-1540701 None:intergenic 35.0%
ATGTTACACATTGCACACTA+TGG + chr2_2:1540683-1540702 None:intergenic 35.0%
TAAAAGGTAGAGGAAGGATT+AGG + chr2_2:1540845-1540864 None:intergenic 35.0%
CCAATTGAGTCTTTGGTATT+TGG + chr2_2:1538768-1538787 None:intergenic 35.0%
CCAAATACCAAAGACTCAAT+TGG - chr2_2:1538765-1538784 Msa0229710:three_prime_UTR 35.0%
!! GCCATGATAGATTTTTAAGG+TGG + chr2_2:1538796-1538815 None:intergenic 35.0%
! CGAGCCATGATAGATTTTTA+AGG + chr2_2:1538799-1538818 None:intergenic 35.0%
! GAAATGGTACCATTGTGTTT+TGG + chr2_2:1538857-1538876 None:intergenic 35.0%
CAATTATGATGGCTGTGAAA+TGG + chr2_2:1538873-1538892 None:intergenic 35.0%
TGACATTTGGTATGCAGAAA+AGG + chr2_2:1538927-1538946 None:intergenic 35.0%
TTTACTGCTGCTGATACATT+TGG + chr2_2:1539012-1539031 None:intergenic 35.0%
AATGTATCAGCAGCAGTAAA+TGG - chr2_2:1539012-1539031 Msa0229710:three_prime_UTR 35.0%
!!! AACTTTTCTTTGGTTGGCTT+GGG - chr2_2:1539064-1539083 Msa0229710:CDS 35.0%
!! TTTTGGCTAGGTTTTGGTAT+TGG - chr2_2:1539213-1539232 Msa0229710:CDS 35.0%
GACATAATAGTAGCTGAAAG+AGG + chr2_2:1539249-1539268 None:intergenic 35.0%
TATGCTAACAAAAAGACTCG+TGG - chr2_2:1539273-1539292 Msa0229710:CDS 35.0%
!! TATGCAAGGGTTTGGAATTT+TGG - chr2_2:1539320-1539339 Msa0229710:CDS 35.0%
TACCAGAAGCTGATTATGTT+TGG - chr2_2:1539433-1539452 Msa0229710:CDS 35.0%
TGGAGAATCATTCTCATGTT+TGG - chr2_2:1539453-1539472 Msa0229710:CDS 35.0%
CAATAGTAAGTTAAACCAGC+AGG + chr2_2:1539486-1539505 None:intergenic 35.0%
!! CTGCTGGTTTAACTTACTAT+TGG - chr2_2:1539484-1539503 Msa0229710:CDS 35.0%
! AAAAGTTTACCTTGCTGTCT+CGG + chr2_2:1539523-1539542 None:intergenic 35.0%
ACCGAGCTACTTATCTATAT+AGG - chr2_2:1539646-1539665 Msa0229710:CDS 35.0%
!! CAGTTTTGGTCTGTTTAGTA+AGG - chr2_2:1539788-1539807 Msa0229710:CDS 35.0%
AAGGAGTTTCTTAGAAGACA+CGG - chr2_2:1539807-1539826 Msa0229710:CDS 35.0%
AATATCGAGAAGAAACCAAG+TGG + chr2_2:1539856-1539875 None:intergenic 35.0%
ATTGCATTCATATCTTGTGC+CGG + chr2_2:1539939-1539958 None:intergenic 35.0%
! GTGGCTTTTATCGATGTTAT+TGG - chr2_2:1540035-1540054 Msa0229710:intron 35.0%
ATCCAAAAAAGAGAGATGCA+GGG - chr2_2:1540348-1540367 Msa0229710:CDS 35.0%
ATCAACAAGCCTCTTCTAAT+AGG - chr2_2:1540531-1540550 Msa0229710:CDS 35.0%
TGTTACACATTGCACACTAT+GGG + chr2_2:1540682-1540701 None:intergenic 35.0%
ATGTTACACATTGCACACTA+TGG + chr2_2:1540683-1540702 None:intergenic 35.0%
TAAAAGGTAGAGGAAGGATT+AGG + chr2_2:1540845-1540864 None:intergenic 35.0%
!! AGTCACCACTAATTGGTCTT+TGG - chr2_2:1538730-1538749 Msa0229710:three_prime_UTR 40.0%
!!! TTGTGTTTTGGCTGCATCAA+GGG + chr2_2:1538845-1538864 None:intergenic 40.0%
!!! ATTGTGTTTTGGCTGCATCA+AGG + chr2_2:1538846-1538865 None:intergenic 40.0%
TTGATGCAGCCAAAACACAA+TGG - chr2_2:1538845-1538864 Msa0229710:three_prime_UTR 40.0%
TTCACAGCCATCATAATTGC+TGG - chr2_2:1538874-1538893 Msa0229710:three_prime_UTR 40.0%
AGCCATCATAATTGCTGGTA+TGG - chr2_2:1538879-1538898 Msa0229710:three_prime_UTR 40.0%
GCCATCATAATTGCTGGTAT+GGG - chr2_2:1538880-1538899 Msa0229710:three_prime_UTR 40.0%
TCCCATACCAGCAATTATGA+TGG + chr2_2:1538884-1538903 None:intergenic 40.0%
! CCAAGTAACTTGGTGACATT+TGG + chr2_2:1538940-1538959 None:intergenic 40.0%
CCAAATGTCACCAAGTTACT+TGG - chr2_2:1538937-1538956 Msa0229710:three_prime_UTR 40.0%
AGAATATACTACACACACCC+AGG - chr2_2:1538961-1538980 Msa0229710:three_prime_UTR 40.0%
!! GTAAATGGTGTTGCTCTTTG+TGG - chr2_2:1539027-1539046 Msa0229710:exon 40.0%
CAAGCCAACCAAAGAAAAGT+TGG + chr2_2:1539065-1539084 None:intergenic 40.0%
!! CAACTTTTCTTTGGTTGGCT+TGG - chr2_2:1539063-1539082 Msa0229710:CDS 40.0%
!!! ACTTTTCTTTGGTTGGCTTG+GGG - chr2_2:1539065-1539084 Msa0229710:CDS 40.0%
TGGTCTAACTCTTGCTCTTA+TGG - chr2_2:1539113-1539132 Msa0229710:CDS 40.0%
TTGCTGAGTGACCAAAAGAA+AGG + chr2_2:1539161-1539180 None:intergenic 40.0%
! TTCTTTTGGTCACTCAGCAA+AGG - chr2_2:1539161-1539180 Msa0229710:CDS 40.0%
! TCTTTTGGTCACTCAGCAAA+GGG - chr2_2:1539162-1539181 Msa0229710:CDS 40.0%
!! CTTCGGTTTTTGCTATGCAA+GGG - chr2_2:1539307-1539326 Msa0229710:CDS 40.0%
!! GTTTTTGCTATGCAAGGGTT+TGG - chr2_2:1539312-1539331 Msa0229710:CDS 40.0%
CTCCAAACATAATCAGCTTC+TGG + chr2_2:1539438-1539457 None:intergenic 40.0%
! AAAGTTTACCTTGCTGTCTC+GGG + chr2_2:1539522-1539541 None:intergenic 40.0%
! GTGCAAGACAAGAACAGTTT+TGG - chr2_2:1539774-1539793 Msa0229710:CDS 40.0%
ACAACGCTTATAGCACTTTG+TGG - chr2_2:1539987-1540006 Msa0229710:intron 40.0%
TCGCTATTCCGTATGATCAT+TGG - chr2_2:1540114-1540133 Msa0229710:CDS 40.0%
GGAGCTATTATAGGTGCATT+TGG - chr2_2:1540299-1540318 Msa0229710:CDS 40.0%
CTTGTATGCTTCACAAAGCA+AGG - chr2_2:1540325-1540344 Msa0229710:CDS 40.0%
GATCCAAAAAAGAGAGATGC+AGG - chr2_2:1540347-1540366 Msa0229710:CDS 40.0%
!!! TACCCTGCATCTCTCTTTTT+TGG + chr2_2:1540353-1540372 None:intergenic 40.0%
TCTTCATTCCAATACCAGCA+GGG + chr2_2:1540376-1540395 None:intergenic 40.0%
TTCTTCATTCCAATACCAGC+AGG + chr2_2:1540377-1540396 None:intergenic 40.0%
!!! CACTCTTATTTTGCTTGCTG+TGG - chr2_2:1540397-1540416 Msa0229710:CDS 40.0%
! CTTGCTGTGGTTAATTGTCT+TGG - chr2_2:1540410-1540429 Msa0229710:CDS 40.0%
TTTCTTGTGCCAGAAGCTAA+TGG - chr2_2:1540446-1540465 Msa0229710:CDS 40.0%
AGGAACAGTCCTATTAGAAG+AGG + chr2_2:1540543-1540562 None:intergenic 40.0%
!! AGTCACCACTAATTGGTCTT+TGG - chr2_2:1538730-1538749 Msa0229710:three_prime_UTR 40.0%
!!! TTGTGTTTTGGCTGCATCAA+GGG + chr2_2:1538845-1538864 None:intergenic 40.0%
!!! ATTGTGTTTTGGCTGCATCA+AGG + chr2_2:1538846-1538865 None:intergenic 40.0%
TTGATGCAGCCAAAACACAA+TGG - chr2_2:1538845-1538864 Msa0229710:three_prime_UTR 40.0%
TTCACAGCCATCATAATTGC+TGG - chr2_2:1538874-1538893 Msa0229710:three_prime_UTR 40.0%
AGCCATCATAATTGCTGGTA+TGG - chr2_2:1538879-1538898 Msa0229710:three_prime_UTR 40.0%
GCCATCATAATTGCTGGTAT+GGG - chr2_2:1538880-1538899 Msa0229710:three_prime_UTR 40.0%
TCCCATACCAGCAATTATGA+TGG + chr2_2:1538884-1538903 None:intergenic 40.0%
! CCAAGTAACTTGGTGACATT+TGG + chr2_2:1538940-1538959 None:intergenic 40.0%
CCAAATGTCACCAAGTTACT+TGG - chr2_2:1538937-1538956 Msa0229710:three_prime_UTR 40.0%
AGAATATACTACACACACCC+AGG - chr2_2:1538961-1538980 Msa0229710:three_prime_UTR 40.0%
!! GTAAATGGTGTTGCTCTTTG+TGG - chr2_2:1539027-1539046 Msa0229710:exon 40.0%
CAAGCCAACCAAAGAAAAGT+TGG + chr2_2:1539065-1539084 None:intergenic 40.0%
!! CAACTTTTCTTTGGTTGGCT+TGG - chr2_2:1539063-1539082 Msa0229710:CDS 40.0%
!!! ACTTTTCTTTGGTTGGCTTG+GGG - chr2_2:1539065-1539084 Msa0229710:CDS 40.0%
TGGTCTAACTCTTGCTCTTA+TGG - chr2_2:1539113-1539132 Msa0229710:CDS 40.0%
TTGCTGAGTGACCAAAAGAA+AGG + chr2_2:1539161-1539180 None:intergenic 40.0%
! TTCTTTTGGTCACTCAGCAA+AGG - chr2_2:1539161-1539180 Msa0229710:CDS 40.0%
! TCTTTTGGTCACTCAGCAAA+GGG - chr2_2:1539162-1539181 Msa0229710:CDS 40.0%
!! CTTCGGTTTTTGCTATGCAA+GGG - chr2_2:1539307-1539326 Msa0229710:CDS 40.0%
!! GTTTTTGCTATGCAAGGGTT+TGG - chr2_2:1539312-1539331 Msa0229710:CDS 40.0%
CTCCAAACATAATCAGCTTC+TGG + chr2_2:1539438-1539457 None:intergenic 40.0%
! AAAGTTTACCTTGCTGTCTC+GGG + chr2_2:1539522-1539541 None:intergenic 40.0%
! GTGCAAGACAAGAACAGTTT+TGG - chr2_2:1539774-1539793 Msa0229710:CDS 40.0%
ACAACGCTTATAGCACTTTG+TGG - chr2_2:1539987-1540006 Msa0229710:intron 40.0%
TCGCTATTCCGTATGATCAT+TGG - chr2_2:1540114-1540133 Msa0229710:CDS 40.0%
GGAGCTATTATAGGTGCATT+TGG - chr2_2:1540299-1540318 Msa0229710:CDS 40.0%
CTTGTATGCTTCACAAAGCA+AGG - chr2_2:1540325-1540344 Msa0229710:CDS 40.0%
GATCCAAAAAAGAGAGATGC+AGG - chr2_2:1540347-1540366 Msa0229710:CDS 40.0%
!!! TACCCTGCATCTCTCTTTTT+TGG + chr2_2:1540353-1540372 None:intergenic 40.0%
TCTTCATTCCAATACCAGCA+GGG + chr2_2:1540376-1540395 None:intergenic 40.0%
TTCTTCATTCCAATACCAGC+AGG + chr2_2:1540377-1540396 None:intergenic 40.0%
!!! CACTCTTATTTTGCTTGCTG+TGG - chr2_2:1540397-1540416 Msa0229710:CDS 40.0%
! CTTGCTGTGGTTAATTGTCT+TGG - chr2_2:1540410-1540429 Msa0229710:CDS 40.0%
TTTCTTGTGCCAGAAGCTAA+TGG - chr2_2:1540446-1540465 Msa0229710:CDS 40.0%
AGGAACAGTCCTATTAGAAG+AGG + chr2_2:1540543-1540562 None:intergenic 40.0%
GTGCTCCAAAGACCAATTAG+TGG + chr2_2:1538738-1538757 None:intergenic 45.0%
GGAGTGACCAATTGAGTCTT+TGG + chr2_2:1538775-1538794 None:intergenic 45.0%
ATCATGGCTCGTGAACAACT+AGG - chr2_2:1538808-1538827 Msa0229710:three_prime_UTR 45.0%
ACATTTGGAGGCAAAGTTCC+AGG + chr2_2:1538997-1539016 None:intergenic 45.0%
ACTGCTGCTGATACATTTGG+AGG + chr2_2:1539009-1539028 None:intergenic 45.0%
! CTAGCAGGCCAACTTTTCTT+TGG - chr2_2:1539054-1539073 Msa0229710:CDS 45.0%
! CAGGCCAACTTTTCTTTGGT+TGG - chr2_2:1539058-1539077 Msa0229710:CDS 45.0%
GTATTCTCCTCTCTTGCTTC+TGG - chr2_2:1539135-1539154 Msa0229710:CDS 45.0%
!! CTTGCTTCTGGCCTTTCTTT+TGG - chr2_2:1539147-1539166 Msa0229710:CDS 45.0%
! CACTCAGCAAAGGGTACAAT+TGG - chr2_2:1539171-1539190 Msa0229710:CDS 45.0%
!! TGGCTAGGTTTTGGTATTGG+TGG - chr2_2:1539216-1539235 Msa0229710:CDS 45.0%
!! GCTTCGGTTTTTGCTATGCA+AGG - chr2_2:1539306-1539325 Msa0229710:CDS 45.0%
!! CAAGGGTTTGGAATTTTGGC+TGG - chr2_2:1539324-1539343 Msa0229710:CDS 45.0%
GCAGCGTCAACTTTATAAGG+CGG + chr2_2:1539402-1539421 None:intergenic 45.0%
GCTGCAGCGTCAACTTTATA+AGG + chr2_2:1539405-1539424 None:intergenic 45.0%
AAAATCCAGCGTTCGAACTC+TGG + chr2_2:1539590-1539609 None:intergenic 45.0%
TAGCTCGGTTAGTGAGTGAA+AGG + chr2_2:1539635-1539654 None:intergenic 45.0%
GGACATGTCAAGTGTGTTAC+AGG - chr2_2:1539710-1539729 Msa0229710:CDS 45.0%
TGCTTGGAACAACTTCCACT+TGG - chr2_2:1539838-1539857 Msa0229710:CDS 45.0%
AGCACTTTGTGGAACTGTTC+CGG - chr2_2:1539998-1540017 Msa0229710:intron 45.0%
AGGTTGAGGTCTACATGTCA+TGG - chr2_2:1540251-1540270 Msa0229710:CDS 45.0%
ATGGTATATCCTCTGCAGCA+GGG - chr2_2:1540270-1540289 Msa0229710:CDS 45.0%
GGGAAAGCTGGAGCTATTAT+AGG - chr2_2:1540290-1540309 Msa0229710:CDS 45.0%
GTGCTCCAAAGACCAATTAG+TGG + chr2_2:1538738-1538757 None:intergenic 45.0%
GGAGTGACCAATTGAGTCTT+TGG + chr2_2:1538775-1538794 None:intergenic 45.0%
ATCATGGCTCGTGAACAACT+AGG - chr2_2:1538808-1538827 Msa0229710:three_prime_UTR 45.0%
ACATTTGGAGGCAAAGTTCC+AGG + chr2_2:1538997-1539016 None:intergenic 45.0%
ACTGCTGCTGATACATTTGG+AGG + chr2_2:1539009-1539028 None:intergenic 45.0%
! CTAGCAGGCCAACTTTTCTT+TGG - chr2_2:1539054-1539073 Msa0229710:CDS 45.0%
! CAGGCCAACTTTTCTTTGGT+TGG - chr2_2:1539058-1539077 Msa0229710:CDS 45.0%
GTATTCTCCTCTCTTGCTTC+TGG - chr2_2:1539135-1539154 Msa0229710:CDS 45.0%
!! CTTGCTTCTGGCCTTTCTTT+TGG - chr2_2:1539147-1539166 Msa0229710:CDS 45.0%
! CACTCAGCAAAGGGTACAAT+TGG - chr2_2:1539171-1539190 Msa0229710:CDS 45.0%
!! TGGCTAGGTTTTGGTATTGG+TGG - chr2_2:1539216-1539235 Msa0229710:CDS 45.0%
!! GCTTCGGTTTTTGCTATGCA+AGG - chr2_2:1539306-1539325 Msa0229710:CDS 45.0%
!! CAAGGGTTTGGAATTTTGGC+TGG - chr2_2:1539324-1539343 Msa0229710:CDS 45.0%
GCAGCGTCAACTTTATAAGG+CGG + chr2_2:1539402-1539421 None:intergenic 45.0%
GCTGCAGCGTCAACTTTATA+AGG + chr2_2:1539405-1539424 None:intergenic 45.0%
AAAATCCAGCGTTCGAACTC+TGG + chr2_2:1539590-1539609 None:intergenic 45.0%
TAGCTCGGTTAGTGAGTGAA+AGG + chr2_2:1539635-1539654 None:intergenic 45.0%
GGACATGTCAAGTGTGTTAC+AGG - chr2_2:1539710-1539729 Msa0229710:CDS 45.0%
TGCTTGGAACAACTTCCACT+TGG - chr2_2:1539838-1539857 Msa0229710:CDS 45.0%
AGCACTTTGTGGAACTGTTC+CGG - chr2_2:1539998-1540017 Msa0229710:intron 45.0%
AGGTTGAGGTCTACATGTCA+TGG - chr2_2:1540251-1540270 Msa0229710:CDS 45.0%
ATGGTATATCCTCTGCAGCA+GGG - chr2_2:1540270-1540289 Msa0229710:CDS 45.0%
GGGAAAGCTGGAGCTATTAT+AGG - chr2_2:1540290-1540309 Msa0229710:CDS 45.0%
!! TGGTTGGCTTGGGGACAAAA+TGG - chr2_2:1539074-1539093 Msa0229710:CDS 50.0%
!! GGTTGGCTTGGGGACAAAAT+GGG - chr2_2:1539075-1539094 Msa0229710:CDS 50.0%
AGAAAGGCCAGAAGCAAGAG+AGG + chr2_2:1539145-1539164 None:intergenic 50.0%
TCGTGGCGCGTTTATAGCTT+CGG - chr2_2:1539290-1539309 Msa0229710:CDS 50.0%
!!! GGGTTTGGAATTTTGGCTGG+TGG - chr2_2:1539327-1539346 Msa0229710:CDS 50.0%
TGAAAATGCCCGAGACAGCA+AGG - chr2_2:1539511-1539530 Msa0229710:CDS 50.0%
AGTTTCCAGAGTTCGAACGC+TGG - chr2_2:1539582-1539601 Msa0229710:CDS 50.0%
GAATGCAAAACAAGCAGCGC+AGG - chr2_2:1539689-1539708 Msa0229710:CDS 50.0%
AGACACGGTCTTCATCTGCT+TGG - chr2_2:1539822-1539841 Msa0229710:CDS 50.0%
!! TAGTATCGGTTGGCTTCCAC+CGG - chr2_2:1539917-1539936 Msa0229710:CDS 50.0%
GCATTCATATCTTGTGCCGG+TGG + chr2_2:1539936-1539955 None:intergenic 50.0%
GCACTTTGTGGAACTGTTCC+GGG - chr2_2:1539999-1540018 Msa0229710:intron 50.0%
!! TGTTCCGGGATACTGGTTCA+CGG - chr2_2:1540013-1540032 Msa0229710:intron 50.0%
CAACCTAGCCGGGAAAATCT+CGG + chr2_2:1540237-1540256 None:intergenic 50.0%
! AGATTTTCCCGGCTAGGTTG+AGG - chr2_2:1540237-1540256 Msa0229710:CDS 50.0%
ATGTAGACCTCAACCTAGCC+GGG + chr2_2:1540247-1540266 None:intergenic 50.0%
CATGTAGACCTCAACCTAGC+CGG + chr2_2:1540248-1540267 None:intergenic 50.0%
CATGGTATATCCTCTGCAGC+AGG - chr2_2:1540269-1540288 Msa0229710:CDS 50.0%
!! TGGTTGGCTTGGGGACAAAA+TGG - chr2_2:1539074-1539093 Msa0229710:CDS 50.0%
!! GGTTGGCTTGGGGACAAAAT+GGG - chr2_2:1539075-1539094 Msa0229710:CDS 50.0%
AGAAAGGCCAGAAGCAAGAG+AGG + chr2_2:1539145-1539164 None:intergenic 50.0%
TCGTGGCGCGTTTATAGCTT+CGG - chr2_2:1539290-1539309 Msa0229710:CDS 50.0%
!!! GGGTTTGGAATTTTGGCTGG+TGG - chr2_2:1539327-1539346 Msa0229710:CDS 50.0%
TGAAAATGCCCGAGACAGCA+AGG - chr2_2:1539511-1539530 Msa0229710:CDS 50.0%
AGTTTCCAGAGTTCGAACGC+TGG - chr2_2:1539582-1539601 Msa0229710:CDS 50.0%
GAATGCAAAACAAGCAGCGC+AGG - chr2_2:1539689-1539708 Msa0229710:CDS 50.0%
AGACACGGTCTTCATCTGCT+TGG - chr2_2:1539822-1539841 Msa0229710:CDS 50.0%
!! TAGTATCGGTTGGCTTCCAC+CGG - chr2_2:1539917-1539936 Msa0229710:CDS 50.0%
GCATTCATATCTTGTGCCGG+TGG + chr2_2:1539936-1539955 None:intergenic 50.0%
GCACTTTGTGGAACTGTTCC+GGG - chr2_2:1539999-1540018 Msa0229710:intron 50.0%
!! TGTTCCGGGATACTGGTTCA+CGG - chr2_2:1540013-1540032 Msa0229710:intron 50.0%
CAACCTAGCCGGGAAAATCT+CGG + chr2_2:1540237-1540256 None:intergenic 50.0%
! AGATTTTCCCGGCTAGGTTG+AGG - chr2_2:1540237-1540256 Msa0229710:CDS 50.0%
ATGTAGACCTCAACCTAGCC+GGG + chr2_2:1540247-1540266 None:intergenic 50.0%
CATGTAGACCTCAACCTAGC+CGG + chr2_2:1540248-1540267 None:intergenic 50.0%
CATGGTATATCCTCTGCAGC+AGG - chr2_2:1540269-1540288 Msa0229710:CDS 50.0%
TTCCAGGCTTGAGTGCACCT+GGG + chr2_2:1538981-1539000 None:intergenic 55.0%
GCTCTTTGTGGCACTCTAGC+AGG - chr2_2:1539039-1539058 Msa0229710:exon 55.0%
ATGTTTGGCGCTGTTCCTGC+TGG - chr2_2:1539468-1539487 Msa0229710:CDS 55.0%
GTGGAACTGTTCCGGGATAC+TGG - chr2_2:1540006-1540025 Msa0229710:intron 55.0%
CTCGGCAGGCACAACAAAAG+TGG + chr2_2:1540219-1540238 None:intergenic 55.0%
! TGTGCCTGCCGAGATTTTCC+CGG - chr2_2:1540226-1540245 Msa0229710:CDS 55.0%
TTCCAGGCTTGAGTGCACCT+GGG + chr2_2:1538981-1539000 None:intergenic 55.0%
GCTCTTTGTGGCACTCTAGC+AGG - chr2_2:1539039-1539058 Msa0229710:exon 55.0%
ATGTTTGGCGCTGTTCCTGC+TGG - chr2_2:1539468-1539487 Msa0229710:CDS 55.0%
GTGGAACTGTTCCGGGATAC+TGG - chr2_2:1540006-1540025 Msa0229710:intron 55.0%
CTCGGCAGGCACAACAAAAG+TGG + chr2_2:1540219-1540238 None:intergenic 55.0%
! TGTGCCTGCCGAGATTTTCC+CGG - chr2_2:1540226-1540245 Msa0229710:CDS 55.0%
GTTCCAGGCTTGAGTGCACC+TGG + chr2_2:1538982-1539001 None:intergenic 60.0%
!! TCCGGGATACTGGTTCACGG+TGG - chr2_2:1540016-1540035 Msa0229710:intron 60.0%
GCCACCGTGAACCAGTATCC+CGG + chr2_2:1540020-1540039 None:intergenic 60.0%
CTAGCCGGGAAAATCTCGGC+AGG + chr2_2:1540233-1540252 None:intergenic 60.0%
! CTGCCGAGATTTTCCCGGCT+AGG - chr2_2:1540231-1540250 Msa0229710:CDS 60.0%
TCCTCTGCAGCAGGGAAAGC+TGG - chr2_2:1540278-1540297 Msa0229710:CDS 60.0%
TCCAGCTTTCCCTGCTGCAG+AGG + chr2_2:1540282-1540301 None:intergenic 60.0%
! AGAGATGCAGGGTACCCTGC+TGG - chr2_2:1540359-1540378 Msa0229710:CDS 60.0%
! GCAGGGTACCCTGCTGGTAT+TGG - chr2_2:1540365-1540384 Msa0229710:CDS 60.0%
GTTCCAGGCTTGAGTGCACC+TGG + chr2_2:1538982-1539001 None:intergenic 60.0%
!! TCCGGGATACTGGTTCACGG+TGG - chr2_2:1540016-1540035 Msa0229710:intron 60.0%
GCCACCGTGAACCAGTATCC+CGG + chr2_2:1540020-1540039 None:intergenic 60.0%
CTAGCCGGGAAAATCTCGGC+AGG + chr2_2:1540233-1540252 None:intergenic 60.0%
! CTGCCGAGATTTTCCCGGCT+AGG - chr2_2:1540231-1540250 Msa0229710:CDS 60.0%
TCCTCTGCAGCAGGGAAAGC+TGG - chr2_2:1540278-1540297 Msa0229710:CDS 60.0%
TCCAGCTTTCCCTGCTGCAG+AGG + chr2_2:1540282-1540301 None:intergenic 60.0%
! AGAGATGCAGGGTACCCTGC+TGG - chr2_2:1540359-1540378 Msa0229710:CDS 60.0%
! GCAGGGTACCCTGCTGGTAT+TGG - chr2_2:1540365-1540384 Msa0229710:CDS 60.0%
CACCCAGGTGCACTCAAGCC+TGG - chr2_2:1538976-1538995 Msa0229710:three_prime_UTR 65.0%
CACCCAGGTGCACTCAAGCC+TGG - chr2_2:1538976-1538995 Msa0229710:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 1538722 1540890 1538722 ID=Msa0229710;Name=Msa0229710
chr2_2 mRNA 1538722 1540890 1538722 ID=Msa0229710-mRNA-1;Parent=Msa0229710;Name=Msa0229710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|2|322|540
chr2_2 exon 1538722 1539944 1538722 ID=Msa0229710-mRNA-1:exon:497;Parent=Msa0229710-mRNA-1
chr2_2 exon 1540080 1540890 1540080 ID=Msa0229710-mRNA-1:exon:496;Parent=Msa0229710-mRNA-1
chr2_2 five_prime_UTR 1540802 1540890 1540802 ID=Msa0229710-mRNA-1:five_prime_utr;Parent=Msa0229710-mRNA-1
chr2_2 CDS 1540080 1540801 1540080 ID=Msa0229710-mRNA-1:cds;Parent=Msa0229710-mRNA-1
chr2_2 CDS 1539044 1539944 1539044 ID=Msa0229710-mRNA-1:cds;Parent=Msa0229710-mRNA-1
chr2_2 three_prime_UTR 1538722 1539043 1538722 ID=Msa0229710-mRNA-1:three_prime_utr;Parent=Msa0229710-mRNA-1
Gene Sequence

>Msa0229710

ATGGCTCGTGAACAACTAGGAGTTCTAACAGCCCTTGATGCAGCCAAAACACAATGGTACCATTTCACAGCCATCATAATTGCTGGTATGGGATTCTTCACAGATGCATATGACCTTTTCTGCATACCAAATGTCACCAAGTTACTTGGAAGAATATACTACACACACCCAGGTGCACTCAAGCCTGGAACTTTGCCTCCAAATGTATCAGCAGCAGTAAATGGTGTTGCTCTTTGTGGCACTCTAGCAGGCCAACTTTTCTTTGGTTGGCTTGGGGACAAAATGGGAAGAAAAAAAGTTTATGGTCTAACTCTTGCTCTTATGGTATTCTCCTCTCTTGCTTCTGGCCTTTCTTTTGGTCACTCAGCAAAGGGTACAATTGGAACTCTTTGTTTCTTTAGATTTTGGCTAGGTTTTGGTATTGGTGGTGATTACCCTCTTTCAGCTACTATTATGTCTGAATATGCTAACAAAAAGACTCGTGGCGCGTTTATAGCTTCGGTTTTTGCTATGCAAGGGTTTGGAATTTTGGCTGGTGGAATTGTTTCTCTTGTAGTTTCAACTGCTTTTGATCATGCTTTTAAGGCTCCGCCTTATAAAGTTGACGCTGCAGCATCACTTGTACCAGAAGCTGATTATGTTTGGAGAATCATTCTCATGTTTGGCGCTGTTCCTGCTGGTTTAACTTACTATTGGCGAATGAAAATGCCCGAGACAGCAAGGTACACTGCACTTGTTGCTAAGAATGCAAAACAAGCAGCGCAGGACATGTCAAGTGTGTTACAGGTTGAAATTGAAGCTGAACAAGAAAAAGTAGACAAGATAGGCGTGCAAGACAAGAACAGTTTTGGTCTGTTTAGTAAGGAGTTTCTTAGAAGACACGGTCTTCATCTGCTTGGAACAACTTCCACTTGGTTTCTTCTCGATATTGCTTATTATAGTTCGAATCTTTTTCAAAAAGATATTTATAGTAGTATCGGTTGGCTTCCACCGGCACAAGATATGAATGCAATTCATGAAGTTTTCAAAGTTGCTAGAGCGACAACGCTTATAGCACTTTGTGGAACTGTTCCGGGATACTGGTTCACGGTGGCTTTTATCGATGTTATTGGTCGTTTTGCAATTCAACTAATGGGATTCTTCTTTATGACTGTGTTCATGTTTGCGCTCGCTATTCCGTATGATCATTGGACTAAAAGAGAAAACAGAATTGGATTTCTTGTTATGTACGCAATGACTTTTTTCTTTGCAAATTTTGGTCCAAATTCAACCACTTTTGTTGTGCCTGCCGAGATTTTCCCGGCTAGGTTGAGGTCTACATGTCATGGTATATCCTCTGCAGCAGGGAAAGCTGGAGCTATTATAGGTGCATTTGGATTCTTGTATGCTTCACAAAGCAAGGATCCAAAAAAGAGAGATGCAGGGTACCCTGCTGGTATTGGAATGAAGAACACTCTTATTTTGCTTGCTGTGGTTAATTGTCTTGGCATATTTTTCACGTTTCTTGTGCCAGAAGCTAATGGAAAATCATTGGAAGAAATGAGTGGAGAGAATGAAGAAGAAGAAACTGATGCTGCTGTTATTGATCAACAAGCCTCTTCTAATAGGACTGTTCCTGTGTGA
Protein sequence

>Msa0229710

MAREQLGVLTALDAAKTQWYHFTAIIIAGMGFFTDAYDLFCIPNVTKLLGRIYYTHPGALKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGLTLALMVFSSLASGLSFGHSAKGTIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIASVFAMQGFGILAGGIVSLVVSTAFDHAFKAPPYKVDAAASLVPEADYVWRIILMFGAVPAGLTYYWRMKMPETARYTALVAKNAKQAAQDMSSVLQVEIEAEQEKVDKIGVQDKNSFGLFSKEFLRRHGLHLLGTTSTWFLLDIAYYSSNLFQKDIYSSIGWLPPAQDMNAIHEVFKVARATTLIALCGTVPGYWFTVAFIDVIGRFAIQLMGFFFMTVFMFALAIPYDHWTKRENRIGFLVMYAMTFFFANFGPNSTTFVVPAEIFPARLRSTCHGISSAAGKAGAIIGAFGFLYASQSKDPKKRDAGYPAGIGMKNTLILLAVVNCLGIFFTFLVPEANGKSLEEMSGENEEEETDAAVIDQQASSNRTVPV*