AlfalfaGEDB | Msa0229710

M. sativa cultivar zhongmu-4 / Msa0229710

KEGG: K08176
GO: GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015103 GO:0015114 GO:0015291 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0016036 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0035435 GO:0042594 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:1901683 GO:1901684
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0229710	XP_003601529.1	99.261	541	3	1	1	540	1	541	0.0	1100

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0229710	sp\|A7KTC5\|PHT11_PETHY	77.407	540	116	3	1	540	1	534	0.0	874

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0229710	B2G3Q0	99.261	541	3	1	1	540	1	541	0.0	1100

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0131420	Msa0229710	0.817772	2.773102e-52	-8.615850e-47
Msa0229710	Msa0387660	0.980103	1.877793e-149	-8.615850e-47
Msa0229710	Msa0387690	0.978983	5.557036e-147	-8.615850e-47
Msa0229710	Msa0387770	0.971420	3.894893e-133	-8.615850e-47
Msa0229710	Msa0936550	0.805445	1.330382e-49	-8.615850e-47
Msa0229710	Msa0972770	0.812691	3.732478e-51	-8.615850e-47
Msa0229710	Msa1130390	0.803177	3.947771e-49	-8.615850e-47
Msa0229710	Msa1201200	0.815832	7.553445e-52	-8.615850e-47
Msa0229710	Msa1252960	0.802877	4.553830e-49	-8.615850e-47
Msa0229710	Msa1458510	0.813343	2.685010e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0229710	MtrunA17_Chr3g0120761	99.261	541	3	1	1	540	1	541	1100
Msa0229710	MtrunA17_Chr1g0186821	78.399	537	113	2	5	540	4	538	880
Msa0229710	MtrunA17_Chr1g0183921	76.392	521	120	1	1	521	1	518	840
Msa0229710	MtrunA17_Chr1g0167731	77.927	521	114	1	5	524	4	524	830
Msa0229710	MtrunA17_Chr1g0167741	77.778	522	115	1	5	525	4	525	829
Msa0229710	MtrunA17_Chr7g0261231	74.954	539	131	2	1	538	1	536	827
Msa0229710	MtrunA17_Chr1g0167761	76.792	530	120	2	5	533	4	531	826
Msa0229710	MtrunA17_Chr7g0261241	76.394	538	122	1	1	538	1	533	821
Msa0229710	MtrunA17_Chr1g0186831	74.125	514	116	3	1	511	1	500	786
Msa0229710	MtrunA17_Chr1g0183911	69.216	536	162	2	1	536	1	533	775

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0229710	AT2G32830.1	76.568	542	125	2	1	540	1	542	0.0	864
Msa0229710	AT3G54700.2	78.585	523	106	2	1	522	1	518	0.0	857
Msa0229710	AT3G54700.1	78.585	523	106	2	1	522	1	518	0.0	857
Msa0229710	AT2G38940.1	78.101	516	113	0	1	516	1	516	0.0	856
Msa0229710	AT5G43350.1	76.145	524	124	1	1	524	1	523	0.0	839
Msa0229710	AT5G43360.1	75.862	522	125	1	1	522	1	521	0.0	834
Msa0229710	AT5G43370.1	75.763	524	126	1	1	524	1	523	0.0	804
Msa0229710	AT5G43370.2	75.763	524	126	1	1	524	1	523	0.0	804
Msa0229710	AT5G43340.1	64.650	529	172	3	1	528	1	515	0.0	715
Msa0229710	AT1G20860.1	49.346	535	253	9	6	533	3	526	1.54e-174	503

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Find 111 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTACCTTGCTGTCT+CGG	0.405238	2_2:+1540070	None:intergenic
AAAGATATTTATAGTAGTAT+CGG	0.503148	2_2:-1539687	Msa0229710:CDS
AAAGTGATATAAGTTTAGTT+TGG	0.352913	2_2:-1538857	Msa0229710:three_prime_UTR
AAAGTTTACCTTGCTGTCTC+GGG	0.450939	2_2:+1540071	None:intergenic
AAATCATTGGAAGAAATGAG+TGG	0.620125	2_2:-1539120	Msa0229710:CDS
AACATATAAAAGGTAGAGGA+AGG	0.561535	2_2:+1538742	None:intergenic
AAGGAGTTTCTTAGAAGACA+CGG	0.654294	2_2:-1539783	Msa0229710:CDS
AATATCGAGAAGAAACCAAG+TGG	0.702390	2_2:+1539737	None:intergenic
AATGTATCAGCAGCAGTAAA+TGG	0.399626	2_2:-1540578	Msa0229710:CDS
ACAACAAAAGTGGTTGAATT+TGG	0.258019	2_2:+1539384	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTATAGTCACCACTAAT+TGG	-	chr2_2:1538723-1538742	Msa0229710:three_prime_UTR	30.0%
TCCACCTTAAAAATCTATCA+TGG	-	chr2_2:1538792-1538811	Msa0229710:three_prime_UTR	30.0%
GTATATTCTTCCAAGTAACT+TGG	+	chr2_2:1538950-1538969	None:intergenic	30.0%
ACATAATAGTAGCTGAAAGA+GGG	+	chr2_2:1539248-1539267	None:intergenic	30.0%
ACCTATATAGATAAGTAGCT+CGG	+	chr2_2:1539650-1539669	None:intergenic	30.0%
CAAGAAAAAGTAGACAAGAT+AGG	-	chr2_2:1539750-1539769	Msa0229710:CDS	30.0%
ACAACAAAAGTGGTTGAATT+TGG	+	chr2_2:1540209-1540228	None:intergenic	30.0%
AGAAGCTAATGGAAAATCAT+TGG	-	chr2_2:1540457-1540476	Msa0229710:CDS	30.0%
AAATCATTGGAAGAAATGAG+TGG	-	chr2_2:1540470-1540489	Msa0229710:CDS	30.0%
GTAATAGTAATACATCACAC+AGG	+	chr2_2:1540563-1540582	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	1538722	1540890	1538722	ID=Msa0229710;Name=Msa0229710
chr2_2	mRNA	1538722	1540890	1538722	ID=Msa0229710-mRNA-1;Parent=Msa0229710;Name=Msa0229710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89\|1\|1\|1\|1\|1\|2\|322\|540
chr2_2	exon	1538722	1539944	1538722	ID=Msa0229710-mRNA-1:exon:497;Parent=Msa0229710-mRNA-1
chr2_2	exon	1540080	1540890	1540080	ID=Msa0229710-mRNA-1:exon:496;Parent=Msa0229710-mRNA-1
chr2_2	five_prime_UTR	1540802	1540890	1540802	ID=Msa0229710-mRNA-1:five_prime_utr;Parent=Msa0229710-mRNA-1
chr2_2	CDS	1540080	1540801	1540080	ID=Msa0229710-mRNA-1:cds;Parent=Msa0229710-mRNA-1
chr2_2	CDS	1539044	1539944	1539044	ID=Msa0229710-mRNA-1:cds;Parent=Msa0229710-mRNA-1
chr2_2	three_prime_UTR	1538722	1539043	1538722	ID=Msa0229710-mRNA-1:three_prime_utr;Parent=Msa0229710-mRNA-1

Gene Sequence

>Msa0229710

ATGGCTCGTGAACAACTAGGAGTTCTAACAGCCCTTGATGCAGCCAAAACACAATGGTACCATTTCACAGCCATCATAATTGCTGGTATGGGATTCTTCACAGATGCATATGACCTTTTCTGCATACCAAATGTCACCAAGTTACTTGGAAGAATATACTACACACACCCAGGTGCACTCAAGCCTGGAACTTTGCCTCCAAATGTATCAGCAGCAGTAAATGGTGTTGCTCTTTGTGGCACTCTAGCAGGCCAACTTTTCTTTGGTTGGCTTGGGGACAAAATGGGAAGAAAAAAAGTTTATGGTCTAACTCTTGCTCTTATGGTATTCTCCTCTCTTGCTTCTGGCCTTTCTTTTGGTCACTCAGCAAAGGGTACAATTGGAACTCTTTGTTTCTTTAGATTTTGGCTAGGTTTTGGTATTGGTGGTGATTACCCTCTTTCAGCTACTATTATGTCTGAATATGCTAACAAAAAGACTCGTGGCGCGTTTATAGCTTCGGTTTTTGCTATGCAAGGGTTTGGAATTTTGGCTGGTGGAATTGTTTCTCTTGTAGTTTCAACTGCTTTTGATCATGCTTTTAAGGCTCCGCCTTATAAAGTTGACGCTGCAGCATCACTTGTACCAGAAGCTGATTATGTTTGGAGAATCATTCTCATGTTTGGCGCTGTTCCTGCTGGTTTAACTTACTATTGGCGAATGAAAATGCCCGAGACAGCAAGGTACACTGCACTTGTTGCTAAGAATGCAAAACAAGCAGCGCAGGACATGTCAAGTGTGTTACAGGTTGAAATTGAAGCTGAACAAGAAAAAGTAGACAAGATAGGCGTGCAAGACAAGAACAGTTTTGGTCTGTTTAGTAAGGAGTTTCTTAGAAGACACGGTCTTCATCTGCTTGGAACAACTTCCACTTGGTTTCTTCTCGATATTGCTTATTATAGTTCGAATCTTTTTCAAAAAGATATTTATAGTAGTATCGGTTGGCTTCCACCGGCACAAGATATGAATGCAATTCATGAAGTTTTCAAAGTTGCTAGAGCGACAACGCTTATAGCACTTTGTGGAACTGTTCCGGGATACTGGTTCACGGTGGCTTTTATCGATGTTATTGGTCGTTTTGCAATTCAACTAATGGGATTCTTCTTTATGACTGTGTTCATGTTTGCGCTCGCTATTCCGTATGATCATTGGACTAAAAGAGAAAACAGAATTGGATTTCTTGTTATGTACGCAATGACTTTTTTCTTTGCAAATTTTGGTCCAAATTCAACCACTTTTGTTGTGCCTGCCGAGATTTTCCCGGCTAGGTTGAGGTCTACATGTCATGGTATATCCTCTGCAGCAGGGAAAGCTGGAGCTATTATAGGTGCATTTGGATTCTTGTATGCTTCACAAAGCAAGGATCCAAAAAAGAGAGATGCAGGGTACCCTGCTGGTATTGGAATGAAGAACACTCTTATTTTGCTTGCTGTGGTTAATTGTCTTGGCATATTTTTCACGTTTCTTGTGCCAGAAGCTAATGGAAAATCATTGGAAGAAATGAGTGGAGAGAATGAAGAAGAAGAAACTGATGCTGCTGTTATTGATCAACAAGCCTCTTCTAATAGGACTGTTCCTGTGTGA

Protein sequence

>Msa0229710

MAREQLGVLTALDAAKTQWYHFTAIIIAGMGFFTDAYDLFCIPNVTKLLGRIYYTHPGALKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKMGRKKVYGLTLALMVFSSLASGLSFGHSAKGTIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIASVFAMQGFGILAGGIVSLVVSTAFDHAFKAPPYKVDAAASLVPEADYVWRIILMFGAVPAGLTYYWRMKMPETARYTALVAKNAKQAAQDMSSVLQVEIEAEQEKVDKIGVQDKNSFGLFSKEFLRRHGLHLLGTTSTWFLLDIAYYSSNLFQKDIYSSIGWLPPAQDMNAIHEVFKVARATTLIALCGTVPGYWFTVAFIDVIGRFAIQLMGFFFMTVFMFALAIPYDHWTKRENRIGFLVMYAMTFFFANFGPNSTTFVVPAEIFPARLRSTCHGISSAAGKAGAIIGAFGFLYASQSKDPKKRDAGYPAGIGMKNTLILLAVVNCLGIFFTFLVPEANGKSLEEMSGENEEEETDAAVIDQQASSNRTVPV*