Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936550 | XP_003618437.1 | 93.295 | 522 | 33 | 1 | 1 | 522 | 1 | 520 | 0.0 | 929 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936550 | sp|Q9FLD5|ASD_ARATH | 62.174 | 460 | 164 | 5 | 5 | 457 | 4 | 460 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091930 | Msa0936550 | 0.804711 | 1.894341e-49 | -8.615850e-47 |
| Msa0092910 | Msa0936550 | 0.820162 | 7.936217e-53 | -8.615850e-47 |
| Msa0708290 | Msa0936550 | 0.834312 | 3.223263e-56 | -8.615850e-47 |
| Msa0708300 | Msa0936550 | 0.855165 | 7.575548e-62 | -8.615850e-47 |
| Msa0780350 | Msa0936550 | 0.818619 | 1.782992e-52 | -8.615850e-47 |
| Msa0780450 | Msa0936550 | 0.831410 | 1.696096e-55 | -8.615850e-47 |
| Msa0834030 | Msa0936550 | 0.804607 | 1.992002e-49 | -8.615850e-47 |
| Msa0131420 | Msa0936550 | 0.840207 | 9.993268e-58 | -8.615850e-47 |
| Msa0229710 | Msa0936550 | 0.805445 | 1.330382e-49 | -8.615850e-47 |
| Msa0377800 | Msa0936550 | 0.834624 | 2.691773e-56 | -8.615850e-47 |
| Msa0387660 | Msa0936550 | 0.819154 | 1.347891e-52 | -8.615850e-47 |
| Msa0387690 | Msa0936550 | 0.822932 | 1.817613e-53 | -8.615850e-47 |
| Msa0387770 | Msa0936550 | 0.804809 | 1.807857e-49 | -8.615850e-47 |
| Msa0419670 | Msa0936550 | 0.826858 | 2.153675e-54 | -8.615850e-47 |
| Msa0419910 | Msa0936550 | 0.818555 | 1.843552e-52 | -8.615850e-47 |
| Msa0426600 | Msa0936550 | 0.834505 | 2.882759e-56 | -8.615850e-47 |
| Msa0431440 | Msa0936550 | 0.842608 | 2.331296e-58 | -8.615850e-47 |
| Msa0466010 | Msa0936550 | 0.836954 | 6.912260e-57 | -8.615850e-47 |
| Msa0472910 | Msa0936550 | 0.829352 | 5.400806e-55 | -8.615850e-47 |
| Msa0476330 | Msa0936550 | 0.847299 | 1.262262e-59 | -8.615850e-47 |
| Msa0490380 | Msa0936550 | 0.827757 | 1.311791e-54 | -8.615850e-47 |
| Msa0517570 | Msa0936550 | 0.834646 | 2.656654e-56 | -8.615850e-47 |
| Msa0520330 | Msa0936550 | 0.842618 | 2.317021e-58 | -8.615850e-47 |
| Msa0574570 | Msa0936550 | 0.873829 | 1.085174e-67 | -8.615850e-47 |
| Msa0574580 | Msa0936550 | 0.864351 | 1.294821e-64 | -8.615850e-47 |
| Msa0580920 | Msa0936550 | 0.840860 | 6.743269e-58 | -8.615850e-47 |
| Msa0870060 | Msa0936550 | 0.809980 | 1.446880e-50 | -8.615850e-47 |
| Msa0870830 | Msa0936550 | 0.839955 | 1.162461e-57 | -8.615850e-47 |
| Msa0870840 | Msa0936550 | 0.804663 | 1.938761e-49 | -8.615850e-47 |
| Msa0903370 | Msa0936550 | 0.802007 | 6.881050e-49 | -8.615850e-47 |
| Msa0903990 | Msa0936550 | 0.808661 | 2.775859e-50 | -8.615850e-47 |
| Msa0936530 | Msa0936550 | 0.936900 | 8.266938e-98 | -8.615850e-47 |
| Msa0936550 | Msa0936560 | 0.840924 | 6.487542e-58 | -8.615850e-47 |
| Msa0936550 | Msa0964490 | 0.823848 | 1.110722e-53 | -8.615850e-47 |
| Msa0936550 | Msa0972770 | 0.830065 | 3.622536e-55 | -8.615850e-47 |
| Msa0936550 | Msa0973520 | 0.920642 | 9.875282e-88 | -8.615850e-47 |
| Msa0936550 | Msa0973530 | 0.830281 | 3.208728e-55 | -8.615850e-47 |
| Msa0936550 | Msa0973540 | 0.843778 | 1.136550e-58 | -8.615850e-47 |
| Msa0936550 | Msa0982780 | 0.834227 | 3.386154e-56 | -8.615850e-47 |
| Msa0936550 | Msa1009110 | 0.837196 | 5.993168e-57 | -8.615850e-47 |
| Msa0936550 | Msa1017160 | 0.804683 | 1.920643e-49 | -8.615850e-47 |
| Msa0936550 | Msa1201200 | 0.843513 | 1.337632e-58 | -8.615850e-47 |
| Msa0936550 | Msa1201230 | 0.819807 | 9.566205e-53 | -8.615850e-47 |
| Msa0936550 | Msa1236730 | 0.800376 | 1.483572e-48 | -8.615850e-47 |
| Msa0936550 | Msa1252960 | 0.836519 | 8.923630e-57 | -8.615850e-47 |
| Msa0936550 | Msa1353870 | 0.822919 | 1.831003e-53 | -8.615850e-47 |
| Msa0936550 | Msa1353880 | 0.852140 | 5.613000e-61 | -8.615850e-47 |
| Msa0936550 | Msa1408180 | 0.840955 | 6.364154e-58 | -8.615850e-47 |
| Msa0936550 | Msa1446900 | 0.822206 | 2.681369e-53 | -8.615850e-47 |
| Msa0936550 | Msa1448980 | 0.833368 | 5.551020e-56 | -8.615850e-47 |
| Msa0936550 | Msa1458510 | 0.811817 | 5.791298e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936550 | MtrunA17_Chr6g0452371 | 93.295 | 522 | 33 | 1 | 1 | 522 | 1 | 520 | 0.0 | 929 |
| Msa0936550 | MtrunA17_Chr6g0452391 | 86.346 | 520 | 69 | 1 | 3 | 522 | 1 | 518 | 0.0 | 856 |
| Msa0936550 | MtrunA17_Chr6g0452451 | 75.053 | 473 | 100 | 4 | 1 | 460 | 1 | 468 | 0.0 | 705 |
| Msa0936550 | MtrunA17_Chr6g0452401 | 76.159 | 453 | 89 | 3 | 25 | 462 | 1 | 449 | 0.0 | 689 |
| Msa0936550 | MtrunA17_Chr7g0215951 | 67.819 | 463 | 140 | 5 | 5 | 461 | 1 | 460 | 0.0 | 644 |
| Msa0936550 | MtrunA17_Chr6g0466811 | 66.602 | 512 | 136 | 6 | 12 | 522 | 21 | 498 | 0.0 | 637 |
| Msa0936550 | MtrunA17_Chr4g0059811 | 60.632 | 475 | 170 | 7 | 7 | 469 | 8 | 477 | 0.0 | 583 |
| Msa0936550 | MtrunA17_Chr6g0452411 | 77.628 | 371 | 66 | 4 | 105 | 462 | 1 | 367 | 0.0 | 573 |
| Msa0936550 | MtrunA17_Chr1g0155131 | 59.290 | 479 | 176 | 6 | 3 | 477 | 1 | 464 | 0.0 | 573 |
| Msa0936550 | MtrunA17_Chr2g0292561 | 57.415 | 472 | 184 | 5 | 7 | 478 | 8 | 462 | 0.0 | 553 |
| Msa0936550 | MtrunA17_Chr1g0155121 | 52.802 | 464 | 203 | 5 | 7 | 460 | 3 | 460 | 4.56e-173 | 497 |
| Msa0936550 | MtrunA17_Chr6g0452361 | 79.734 | 301 | 33 | 3 | 215 | 515 | 1 | 273 | 3.93e-148 | 425 |
| Msa0936550 | MtrunA17_Chr6g0452481 | 71.340 | 321 | 72 | 5 | 193 | 512 | 1 | 302 | 2.81e-145 | 419 |
| Msa0936550 | MtrunA17_Chr4g0072491 | 43.038 | 474 | 253 | 6 | 7 | 472 | 3 | 467 | 5.73e-126 | 378 |
| Msa0936550 | MtrunA17_Chr5g0404651 | 37.255 | 510 | 278 | 8 | 8 | 505 | 13 | 492 | 9.80e-114 | 346 |
| Msa0936550 | MtrunA17_Chr2g0315921 | 40.764 | 471 | 227 | 14 | 14 | 470 | 14 | 446 | 1.82e-107 | 328 |
| Msa0936550 | MtrunA17_Chr2g0315991 | 39.139 | 511 | 246 | 14 | 12 | 514 | 13 | 466 | 1.58e-106 | 326 |
| Msa0936550 | MtrunA17_Chr2g0315911 | 40.959 | 459 | 225 | 11 | 29 | 482 | 39 | 456 | 1.90e-105 | 323 |
| Msa0936550 | MtrunA17_Chr2g0308991 | 39.503 | 443 | 242 | 9 | 5 | 441 | 4 | 426 | 5.06e-105 | 324 |
| Msa0936550 | MtrunA17_Chr2g0315971 | 40.899 | 467 | 233 | 10 | 12 | 472 | 7 | 436 | 8.96e-104 | 327 |
| Msa0936550 | MtrunA17_Chr2g0315971 | 49.474 | 285 | 112 | 6 | 180 | 462 | 450 | 704 | 2.67e-85 | 278 |
| Msa0936550 | MtrunA17_Chr8g0372701 | 37.866 | 478 | 266 | 9 | 8 | 481 | 23 | 473 | 1.41e-103 | 320 |
| Msa0936550 | MtrunA17_Chr2g0315981 | 38.972 | 467 | 249 | 10 | 12 | 472 | 7 | 443 | 1.05e-101 | 313 |
| Msa0936550 | MtrunA17_Chr2g0316041 | 41.889 | 413 | 200 | 9 | 65 | 469 | 1 | 381 | 5.77e-101 | 311 |
| Msa0936550 | MtrunA17_Chr5g0404661 | 37.190 | 484 | 269 | 12 | 3 | 472 | 19 | 481 | 3.61e-92 | 290 |
| Msa0936550 | MtrunA17_Chr2g0316021 | 35.743 | 498 | 235 | 11 | 12 | 503 | 7 | 425 | 1.88e-89 | 281 |
| Msa0936550 | MtrunA17_Chr3g0134831 | 44.518 | 301 | 149 | 5 | 162 | 461 | 4 | 287 | 5.03e-83 | 259 |
| Msa0936550 | MtrunA17_Chr3g0127381 | 30.388 | 464 | 264 | 12 | 8 | 462 | 2 | 415 | 8.89e-66 | 221 |
| Msa0936550 | MtrunA17_Chr7g0276031 | 33.854 | 384 | 194 | 10 | 63 | 441 | 59 | 387 | 3.59e-65 | 219 |
| Msa0936550 | MtrunA17_Chr8g0346371 | 31.382 | 427 | 243 | 11 | 40 | 462 | 35 | 415 | 6.59e-63 | 213 |
| Msa0936550 | MtrunA17_Chr1g0148871 | 60.741 | 135 | 48 | 3 | 328 | 460 | 2 | 133 | 4.38e-42 | 148 |
| Msa0936550 | MtrunA17_Chr6g0452351 | 56.198 | 121 | 52 | 1 | 11 | 130 | 20 | 140 | 7.39e-41 | 144 |
| Msa0936550 | MtrunA17_Chr5g0404681 | 41.935 | 124 | 62 | 1 | 146 | 269 | 39 | 152 | 6.80e-30 | 114 |
| Msa0936550 | MtrunA17_Chr5g0404671 | 50.926 | 108 | 49 | 2 | 355 | 461 | 1 | 105 | 7.62e-30 | 115 |
| Msa0936550 | MtrunA17_Chr5g0404691 | 37.931 | 174 | 81 | 5 | 289 | 461 | 2 | 149 | 1.77e-22 | 94.0 |
| Msa0936550 | MtrunA17_Chr1g0211521 | 45.113 | 133 | 50 | 5 | 388 | 519 | 5 | 115 | 1.98e-20 | 87.0 |
| Msa0936550 | MtrunA17_Chr1g0192151 | 33.333 | 177 | 85 | 6 | 234 | 401 | 193 | 345 | 4.61e-13 | 71.2 |
| Msa0936550 | MtrunA17_Chr4g0014731 | 33.333 | 177 | 85 | 6 | 234 | 401 | 194 | 346 | 5.24e-13 | 70.9 |
| Msa0936550 | MtrunA17_Chr7g0260601 | 30.270 | 185 | 98 | 7 | 218 | 394 | 250 | 411 | 1.79e-12 | 70.1 |
| Msa0936550 | MtrunA17_Chr8g0362771 | 29.293 | 198 | 106 | 7 | 203 | 392 | 232 | 403 | 1.67e-11 | 67.0 |
| Msa0936550 | MtrunA17_Chr6g0476861 | 27.907 | 301 | 165 | 14 | 205 | 480 | 194 | 467 | 1.81e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0936550 | AT5G40010.1 | 62.174 | 460 | 164 | 5 | 5 | 457 | 4 | 460 | 0.0 | 580 |
| Msa0936550 | AT3G28580.1 | 61.171 | 461 | 162 | 8 | 5 | 457 | 4 | 455 | 0.0 | 547 |
| Msa0936550 | AT3G28510.1 | 58.785 | 461 | 188 | 2 | 6 | 466 | 5 | 463 | 0.0 | 529 |
| Msa0936550 | AT3G28580.2 | 57.860 | 458 | 160 | 7 | 5 | 457 | 4 | 433 | 4.42e-175 | 502 |
| Msa0936550 | AT3G28540.2 | 56.803 | 463 | 179 | 8 | 6 | 459 | 5 | 455 | 9.98e-170 | 489 |
| Msa0936550 | AT3G28540.1 | 56.803 | 463 | 179 | 8 | 6 | 459 | 5 | 455 | 1.20e-169 | 489 |
| Msa0936550 | AT3G28610.1 | 51.143 | 481 | 176 | 10 | 10 | 465 | 4 | 450 | 1.78e-165 | 478 |
| Msa0936550 | AT3G28600.1 | 51.148 | 479 | 191 | 9 | 1 | 465 | 1 | 450 | 6.87e-163 | 471 |
| Msa0936550 | AT5G40000.1 | 49.263 | 475 | 198 | 9 | 3 | 461 | 2 | 449 | 5.27e-156 | 453 |
| Msa0936550 | AT3G28520.1 | 55.094 | 481 | 193 | 9 | 17 | 487 | 2 | 469 | 3.15e-152 | 444 |
| Msa0936550 | AT3G28570.2 | 47.312 | 465 | 194 | 8 | 10 | 461 | 14 | 440 | 3.30e-145 | 425 |
| Msa0936550 | AT3G28570.1 | 47.312 | 465 | 194 | 8 | 10 | 461 | 7 | 433 | 3.94e-145 | 425 |
| Msa0936550 | AT3G28600.2 | 48.225 | 479 | 166 | 9 | 1 | 465 | 1 | 411 | 4.26e-144 | 422 |
| Msa0936550 | AT5G57480.1 | 39.096 | 509 | 286 | 8 | 7 | 505 | 3 | 497 | 5.47e-124 | 373 |
| Msa0936550 | AT4G25835.1 | 40.842 | 475 | 268 | 7 | 7 | 477 | 3 | 468 | 2.50e-122 | 369 |
| Msa0936550 | AT4G30250.2 | 40.552 | 471 | 258 | 8 | 3 | 461 | 1 | 461 | 2.83e-115 | 351 |
| Msa0936550 | AT4G30250.1 | 40.512 | 469 | 257 | 8 | 5 | 461 | 1 | 459 | 9.21e-115 | 349 |
| Msa0936550 | AT3G50940.1 | 40.090 | 444 | 225 | 9 | 33 | 471 | 44 | 451 | 1.28e-108 | 331 |
| Msa0936550 | AT3G50930.1 | 38.416 | 505 | 265 | 13 | 20 | 513 | 73 | 542 | 1.55e-107 | 333 |
| Msa0936550 | AT2G18193.1 | 39.004 | 482 | 255 | 10 | 13 | 491 | 19 | 464 | 1.95e-103 | 319 |
| Msa0936550 | AT5G17760.1 | 40.444 | 450 | 214 | 9 | 68 | 492 | 72 | 492 | 8.25e-103 | 318 |
| Msa0936550 | AT4G05380.1 | 38.994 | 477 | 259 | 11 | 4 | 475 | 11 | 460 | 2.67e-101 | 313 |
| Msa0936550 | AT5G17740.1 | 37.045 | 494 | 272 | 11 | 6 | 485 | 11 | 479 | 4.74e-101 | 315 |
| Msa0936550 | AT5G17730.1 | 36.382 | 492 | 266 | 12 | 5 | 482 | 10 | 468 | 1.53e-99 | 308 |
| Msa0936550 | AT1G43910.1 | 38.055 | 473 | 263 | 10 | 4 | 471 | 10 | 457 | 1.32e-94 | 296 |
| Msa0936550 | AT2G18190.1 | 37.234 | 470 | 259 | 10 | 8 | 469 | 15 | 456 | 3.16e-94 | 296 |
| Msa0936550 | AT5G17750.1 | 35.198 | 429 | 217 | 10 | 8 | 426 | 13 | 390 | 3.57e-84 | 266 |
| Msa0936550 | AT2G46620.1 | 30.952 | 462 | 268 | 8 | 5 | 461 | 1 | 416 | 3.89e-69 | 230 |
| Msa0936550 | AT5G17760.2 | 37.786 | 262 | 137 | 4 | 68 | 314 | 72 | 322 | 1.06e-52 | 182 |
| Msa0936550 | AT3G28560.1 | 43.056 | 216 | 113 | 4 | 6 | 219 | 5 | 212 | 9.02e-47 | 164 |
| Msa0936550 | AT3G29800.1 | 32.500 | 320 | 166 | 7 | 143 | 458 | 104 | 377 | 5.99e-46 | 167 |
| Msa0936550 | AT4G05340.1 | 52.083 | 96 | 40 | 1 | 317 | 412 | 4 | 93 | 5.61e-24 | 96.7 |
| Msa0936550 | AT1G09100.1 | 33.898 | 177 | 84 | 6 | 234 | 401 | 193 | 345 | 1.14e-13 | 73.6 |
| Msa0936550 | AT3G05530.1 | 33.333 | 177 | 85 | 6 | 234 | 401 | 194 | 346 | 4.76e-13 | 71.6 |
| Msa0936550 | AT3G02450.1 | 25.890 | 309 | 175 | 11 | 224 | 520 | 346 | 612 | 4.41e-12 | 68.9 |
Find 74 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGTAAGGTAACTCTTTC+TGG | 0.086559 | 6_3:-7356378 | Msa0936550:CDS |
| AAACGTGGTTATCTACTTTA+TGG | 0.185533 | 6_3:-7356672 | Msa0936550:CDS |
| CAAAGTATGAAGATGGGAAT+TGG | 0.285135 | 6_3:-7357410 | None:intergenic |
| TTTGAGCATCCTGCAAGATT+TGG | 0.298067 | 6_3:-7356795 | Msa0936550:CDS |
| TCTTGAGATTGCAAAGAAAA+AGG | 0.305733 | 6_3:-7356028 | Msa0936550:CDS |
| TGAGGAGGAAGCAAGGAAAA+AGG | 0.320155 | 6_3:-7356004 | Msa0936550:CDS |
| ATAAAGTTTCATGAGTTATC+AGG | 0.325799 | 6_3:-7357242 | Msa0936550:CDS |
| AAAGTATGAAGATGGGAATT+GGG | 0.332092 | 6_3:-7357409 | None:intergenic |
| CCAACAACCCTAGTAGTAAT+TGG | 0.339715 | 6_3:-7356854 | Msa0936550:CDS |
| AACTTGATCCTGCTCTTATA+AGG | 0.349513 | 6_3:-7356275 | Msa0936550:CDS |
| AATGGATAAGCATATAGAAA+TGG | 0.368048 | 6_3:-7356244 | Msa0936550:CDS |
| TTGTAGCTATCAAGCTTTCA+AGG | 0.388003 | 6_3:-7356217 | Msa0936550:CDS |
| TCCAATTATTGAAAAGTTGT+TGG | 0.390561 | 6_3:-7356148 | Msa0936550:CDS |
| CCAATTATTGAAAAGTTGTT+GGG | 0.400795 | 6_3:-7356147 | Msa0936550:CDS |
| GCTAGGGTTCCAAATCTTGC+AGG | 0.402544 | 6_3:+7356786 | None:intergenic |
| AAAAGGATGAGGAGGAAGCA+AGG | 0.404612 | 6_3:-7356011 | Msa0936550:CDS |
| AGTTCAATGGAGTCAAAGTT+TGG | 0.406209 | 6_3:-7357064 | Msa0936550:CDS |
| TTCTTTCTTCTTCCTTTGCC+CGG | 0.416876 | 6_3:+7356470 | None:intergenic |
| CTTTATGGTCCACCAGGAAC+TGG | 0.417256 | 6_3:-7356657 | Msa0936550:CDS |
| AAATCTTCAGTGATTGACTT+TGG | 0.418717 | 6_3:+7356081 | None:intergenic |
| TGAAACTTTATGTTGATGTA+TGG | 0.421952 | 6_3:+7357254 | None:intergenic |
| AACATTTCAAAGTATGAAGA+TGG | 0.422358 | 6_3:-7357417 | None:intergenic |
| ATGGATAAGCATATAGAAAT+GGG | 0.422830 | 6_3:-7356243 | Msa0936550:CDS |
| CAACACATGTTGAATGTAAG+AGG | 0.425064 | 6_3:+7356926 | None:intergenic |
| TACATCCACCAATTACTACT+AGG | 0.426977 | 6_3:+7356846 | None:intergenic |
| CCAATTACTACTAGGGTTGT+TGG | 0.427886 | 6_3:+7356854 | None:intergenic |
| CTCTTACATTCAACATGTGT+TGG | 0.428090 | 6_3:-7356925 | Msa0936550:CDS |
| AAAGAGTATTATGCTAAAGT+TGG | 0.429304 | 6_3:-7356705 | Msa0936550:CDS |
| TCTTGAGTTAACAACTGTTA+AGG | 0.446059 | 6_3:-7356580 | Msa0936550:CDS |
| AGTTTGCACTAAGATATGTT+TGG | 0.446804 | 6_3:+7357183 | None:intergenic |
| ATTCAACATGTGTTGGATGA+AGG | 0.453587 | 6_3:-7356918 | Msa0936550:CDS |
| GATCTTCTTAAGTTCAAGAA+AGG | 0.458025 | 6_3:-7356729 | Msa0936550:CDS |
| AGATGGGAATTGGGGAACTA+TGG | 0.460698 | 6_3:-7357400 | Msa0936550:CDS |
| AGAAAACATGCACGAAGATA+AGG | 0.463426 | 6_3:+7357311 | None:intergenic |
| ATGCTAAAGTTGGAAAAGCT+TGG | 0.482796 | 6_3:-7356695 | Msa0936550:CDS |
| TTCAACATGTGTTGGATGAA+GGG | 0.485677 | 6_3:-7356917 | Msa0936550:CDS |
| CTTCCCCTCCTTATAAGAGC+AGG | 0.487071 | 6_3:+7356267 | None:intergenic |
| ATTGACTCAAGAGGAAGAAA+AGG | 0.488311 | 6_3:-7355929 | Msa0936550:CDS |
| AAGCTATTATGAGCAAGAAT+AGG | 0.501969 | 6_3:-7356893 | Msa0936550:CDS |
| CTCTCGATCTCACCGGGCAA+AGG | 0.502496 | 6_3:-7356482 | Msa0936550:CDS |
| GATTGTTCTCTCGATCTCAC+CGG | 0.518830 | 6_3:-7356489 | Msa0936550:CDS |
| ATTTGCTATAGCTGATATCA+TGG | 0.523985 | 6_3:+7356626 | None:intergenic |
| AAATTCTCAGCAACATCAGC+AGG | 0.526229 | 6_3:+7356108 | None:intergenic |
| GAAATCATAGATGAGTTCAA+TGG | 0.530945 | 6_3:-7357077 | Msa0936550:CDS |
| TCAAGAGGAAGAAAAGGTTA+AGG | 0.538611 | 6_3:-7355923 | Msa0936550:CDS |
| ACATCCACCAATTACTACTA+GGG | 0.539649 | 6_3:+7356847 | None:intergenic |
| TCATCCATGCTTAGAACAAG+TGG | 0.540829 | 6_3:+7357107 | None:intergenic |
| TCTTATAAGGAGGGGAAGAA+TGG | 0.542051 | 6_3:-7356262 | Msa0936550:CDS |
| ATTGTTCTCTCGATCTCACC+GGG | 0.546404 | 6_3:-7356488 | Msa0936550:CDS |
| GATGGAATTTGGTCAGCTTG+TGG | 0.549571 | 6_3:-7356339 | Msa0936550:CDS |
| GTTGGAAAAGCTTGGAAACG+TGG | 0.566291 | 6_3:-7356687 | Msa0936550:CDS |
| CAACTAGGTTCAATCACGGC+TGG | 0.570804 | 6_3:-7357374 | Msa0936550:CDS |
| CATCCATGCTTAGAACAAGT+GGG | 0.570942 | 6_3:+7357108 | None:intergenic |
| TGATGAGAATGATGAAAAGA+AGG | 0.571153 | 6_3:-7356436 | Msa0936550:CDS |
| AACCCCACTTGTTCTAAGCA+TGG | 0.576665 | 6_3:-7357111 | Msa0936550:CDS |
| AAACATGCACGAAGATAAGG+TGG | 0.578635 | 6_3:+7357314 | None:intergenic |
| AAGTATGAAGATGGGAATTG+GGG | 0.585836 | 6_3:-7357408 | None:intergenic |
| TGATCCTGCTCTTATAAGGA+GGG | 0.590776 | 6_3:-7356271 | Msa0936550:CDS |
| TCAATGGAGTCAAAGTTTGG+TGG | 0.596166 | 6_3:-7357061 | Msa0936550:CDS |
| ACATTTCAAAGTATGAAGAT+GGG | 0.598757 | 6_3:-7357416 | None:intergenic |
| TTGATCCTGCTCTTATAAGG+AGG | 0.600009 | 6_3:-7356272 | Msa0936550:CDS |
| GGATGAGGAAGCTCGGCTCA+AGG | 0.601592 | 6_3:-7355977 | Msa0936550:CDS |
| AGGTAGAGGATGAGGAAGCT+CGG | 0.611983 | 6_3:-7355984 | Msa0936550:CDS |
| TATCTACTTTATGGTCCACC+AGG | 0.617929 | 6_3:-7356663 | Msa0936550:CDS |
| GGGGAACTATGGTCACAACT+AGG | 0.620126 | 6_3:-7357389 | Msa0936550:CDS |
| AAGATTTGGAACCCTAGCTA+TGG | 0.624596 | 6_3:-7356781 | Msa0936550:CDS |
| ACAACCCTAGTAGTAATTGG+TGG | 0.629329 | 6_3:-7356851 | Msa0936550:CDS |
| ATCCATGCTTAGAACAAGTG+GGG | 0.634090 | 6_3:+7357109 | None:intergenic |
| GAGAATGGTGTCAAAGACAA+TGG | 0.641961 | 6_3:-7355871 | Msa0936550:CDS |
| GTCACAACTAGGTTCAATCA+CGG | 0.654145 | 6_3:-7357378 | Msa0936550:CDS |
| GATCCTGCTCTTATAAGGAG+GGG | 0.654308 | 6_3:-7356270 | Msa0936550:CDS |
| GGATGTATAAAAGCACAAAG+TGG | 0.671130 | 6_3:-7356830 | Msa0936550:CDS |
| GGTCAGCTTGTGGATCAGAG+AGG | 0.714357 | 6_3:-7356329 | Msa0936550:CDS |
| AACATGCACGAAGATAAGGT+GGG | 0.716780 | 6_3:+7357315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTATTGATGGAATT+TGG | - | chr6_3:7356912-7356931 | Msa0936550:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_3:7356961-7356980 | Msa0936550:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | - | chr6_3:7356912-7356931 | Msa0936550:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_3:7356961-7356980 | Msa0936550:CDS | 20.0% |
| ! | TGAAACTTTATGTTGATGTA+TGG | + | chr6_3:7356011-7356030 | None:intergenic | 25.0% |
| ! | ATAAAGTTTCATGAGTTATC+AGG | - | chr6_3:7356020-7356039 | Msa0936550:CDS | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_3:7356243-7356262 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_3:7356272-7356291 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | - | chr6_3:7356557-7356576 | Msa0936550:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_3:7356854-7356873 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAAATGAAAGTA+AGG | - | chr6_3:7356871-7356890 | Msa0936550:CDS | 25.0% |
| ! | AATGGATAAGCATATAGAAA+TGG | - | chr6_3:7357018-7357037 | Msa0936550:CDS | 25.0% |
| ! | ATGGATAAGCATATAGAAAT+GGG | - | chr6_3:7357019-7357038 | Msa0936550:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_3:7357114-7357133 | Msa0936550:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_3:7357115-7357134 | Msa0936550:CDS | 25.0% |
| !!! | TAAGGTTGATGAAAAATTAG+AGG | - | chr6_3:7357357-7357376 | Msa0936550:CDS | 25.0% |
| ! | AAAATTAGAGGAAAAAGTGA+AGG | - | chr6_3:7357369-7357388 | Msa0936550:CDS | 25.0% |
| ! | TGAAACTTTATGTTGATGTA+TGG | + | chr6_3:7356011-7356030 | None:intergenic | 25.0% |
| ! | ATAAAGTTTCATGAGTTATC+AGG | - | chr6_3:7356020-7356039 | Msa0936550:CDS | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_3:7356243-7356262 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_3:7356272-7356291 | None:intergenic | 25.0% |
| !!! | AAAGAGTATTATGCTAAAGT+TGG | - | chr6_3:7356557-7356576 | Msa0936550:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_3:7356854-7356873 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAAATGAAAGTA+AGG | - | chr6_3:7356871-7356890 | Msa0936550:CDS | 25.0% |
| ! | AATGGATAAGCATATAGAAA+TGG | - | chr6_3:7357018-7357037 | Msa0936550:CDS | 25.0% |
| ! | ATGGATAAGCATATAGAAAT+GGG | - | chr6_3:7357019-7357038 | Msa0936550:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_3:7357114-7357133 | Msa0936550:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_3:7357115-7357134 | Msa0936550:CDS | 25.0% |
| !!! | TAAGGTTGATGAAAAATTAG+AGG | - | chr6_3:7357357-7357376 | Msa0936550:CDS | 25.0% |
| ! | AAAATTAGAGGAAAAAGTGA+AGG | - | chr6_3:7357369-7357388 | Msa0936550:CDS | 25.0% |
| TGGGAAAAATTTGTCAATCA+TGG | + | chr6_3:7355931-7355950 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_3:7356082-7356101 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_3:7356185-7356204 | Msa0936550:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_3:7356240-7356259 | None:intergenic | 30.0% |
| !! | ATGCTTTTTGTGGAAAGTTA+GGG | + | chr6_3:7356300-7356319 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_3:7356369-7356388 | Msa0936550:CDS | 30.0% | |
| ! | AGAATCTCTTCTTTCTTTTC+TGG | + | chr6_3:7356509-7356528 | None:intergenic | 30.0% |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_3:7356533-7356552 | Msa0936550:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_3:7356590-7356609 | Msa0936550:CDS | 30.0% | |
| !! | ATTTGCTATAGCTGATATCA+TGG | + | chr6_3:7356639-7356658 | None:intergenic | 30.0% |
| TCTTGAGTTAACAACTGTTA+AGG | - | chr6_3:7356682-7356701 | Msa0936550:CDS | 30.0% | |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_3:7356826-7356845 | Msa0936550:CDS | 30.0% | |
| !!! | GGTTTGCTGAATTTTATTGA+TGG | - | chr6_3:7356905-7356924 | Msa0936550:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_3:7357118-7357137 | None:intergenic | 30.0% |
| ! | AAATCTTCAGTGATTGACTT+TGG | + | chr6_3:7357184-7357203 | None:intergenic | 30.0% |
| TCTTGAGATTGCAAAGAAAA+AGG | - | chr6_3:7357234-7357253 | Msa0936550:CDS | 30.0% | |
| ! | GAAACAAAAATTGACTCAAG+AGG | - | chr6_3:7357324-7357343 | Msa0936550:CDS | 30.0% |
| TGGGAAAAATTTGTCAATCA+TGG | + | chr6_3:7355931-7355950 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_3:7356082-7356101 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_3:7356185-7356204 | Msa0936550:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_3:7356240-7356259 | None:intergenic | 30.0% |
| !! | ATGCTTTTTGTGGAAAGTTA+GGG | + | chr6_3:7356300-7356319 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_3:7356369-7356388 | Msa0936550:CDS | 30.0% | |
| ! | AGAATCTCTTCTTTCTTTTC+TGG | + | chr6_3:7356509-7356528 | None:intergenic | 30.0% |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_3:7356533-7356552 | Msa0936550:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_3:7356590-7356609 | Msa0936550:CDS | 30.0% | |
| !! | ATTTGCTATAGCTGATATCA+TGG | + | chr6_3:7356639-7356658 | None:intergenic | 30.0% |
| TCTTGAGTTAACAACTGTTA+AGG | - | chr6_3:7356682-7356701 | Msa0936550:CDS | 30.0% | |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_3:7356826-7356845 | Msa0936550:CDS | 30.0% | |
| !!! | GGTTTGCTGAATTTTATTGA+TGG | - | chr6_3:7356905-7356924 | Msa0936550:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_3:7357118-7357137 | None:intergenic | 30.0% |
| ! | AAATCTTCAGTGATTGACTT+TGG | + | chr6_3:7357184-7357203 | None:intergenic | 30.0% |
| TCTTGAGATTGCAAAGAAAA+AGG | - | chr6_3:7357234-7357253 | Msa0936550:CDS | 30.0% | |
| ! | GAAACAAAAATTGACTCAAG+AGG | - | chr6_3:7357324-7357343 | Msa0936550:CDS | 30.0% |
| AGAAAACATGCACGAAGATA+AGG | + | chr6_3:7355954-7355973 | None:intergenic | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_3:7356198-7356217 | Msa0936550:CDS | 35.0% | |
| !! | GATGCTTTTTGTGGAAAGTT+AGG | + | chr6_3:7356301-7356320 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_3:7356339-7356358 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_3:7356337-7356356 | Msa0936550:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_3:7356344-7356363 | Msa0936550:CDS | 35.0% | |
| TTCAACATGTGTTGGATGAA+GGG | - | chr6_3:7356345-7356364 | Msa0936550:CDS | 35.0% | |
| ACATCCACCAATTACTACTA+GGG | + | chr6_3:7356418-7356437 | None:intergenic | 35.0% | |
| TACATCCACCAATTACTACT+AGG | + | chr6_3:7356419-7356438 | None:intergenic | 35.0% | |
| ! | GGATGTATAAAAGCACAAAG+TGG | - | chr6_3:7356432-7356451 | Msa0936550:CDS | 35.0% |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_3:7356567-7356586 | Msa0936550:CDS | 35.0% | |
| GAAAGTAAGGTAACTCTTTC+TGG | - | chr6_3:7356884-7356903 | Msa0936550:CDS | 35.0% | |
| AACTTGATCCTGCTCTTATA+AGG | - | chr6_3:7356987-7357006 | Msa0936550:CDS | 35.0% | |
| TTGTAGCTATCAAGCTTTCA+AGG | - | chr6_3:7357045-7357064 | Msa0936550:CDS | 35.0% | |
| GATTGCAAAGAAAAAGGATG+AGG | - | chr6_3:7357240-7357259 | Msa0936550:CDS | 35.0% | |
| ! | ATTGACTCAAGAGGAAGAAA+AGG | - | chr6_3:7357333-7357352 | Msa0936550:CDS | 35.0% |
| TCAAGAGGAAGAAAAGGTTA+AGG | - | chr6_3:7357339-7357358 | Msa0936550:CDS | 35.0% | |
| AGAAAACATGCACGAAGATA+AGG | + | chr6_3:7355954-7355973 | None:intergenic | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_3:7356198-7356217 | Msa0936550:CDS | 35.0% | |
| !! | GATGCTTTTTGTGGAAAGTT+AGG | + | chr6_3:7356301-7356320 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_3:7356339-7356358 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_3:7356337-7356356 | Msa0936550:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_3:7356344-7356363 | Msa0936550:CDS | 35.0% | |
| TTCAACATGTGTTGGATGAA+GGG | - | chr6_3:7356345-7356364 | Msa0936550:CDS | 35.0% | |
| ACATCCACCAATTACTACTA+GGG | + | chr6_3:7356418-7356437 | None:intergenic | 35.0% | |
| TACATCCACCAATTACTACT+AGG | + | chr6_3:7356419-7356438 | None:intergenic | 35.0% | |
| ! | GGATGTATAAAAGCACAAAG+TGG | - | chr6_3:7356432-7356451 | Msa0936550:CDS | 35.0% |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_3:7356567-7356586 | Msa0936550:CDS | 35.0% | |
| GAAAGTAAGGTAACTCTTTC+TGG | - | chr6_3:7356884-7356903 | Msa0936550:CDS | 35.0% | |
| AACTTGATCCTGCTCTTATA+AGG | - | chr6_3:7356987-7357006 | Msa0936550:CDS | 35.0% | |
| TTGTAGCTATCAAGCTTTCA+AGG | - | chr6_3:7357045-7357064 | Msa0936550:CDS | 35.0% | |
| GATTGCAAAGAAAAAGGATG+AGG | - | chr6_3:7357240-7357259 | Msa0936550:CDS | 35.0% | |
| ! | ATTGACTCAAGAGGAAGAAA+AGG | - | chr6_3:7357333-7357352 | Msa0936550:CDS | 35.0% |
| TCAAGAGGAAGAAAAGGTTA+AGG | - | chr6_3:7357339-7357358 | Msa0936550:CDS | 35.0% | |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_3:7355884-7355903 | Msa0936550:CDS | 40.0% | |
| AACATGCACGAAGATAAGGT+GGG | + | chr6_3:7355950-7355969 | None:intergenic | 40.0% | |
| AAACATGCACGAAGATAAGG+TGG | + | chr6_3:7355951-7355970 | None:intergenic | 40.0% | |
| ATCCATGCTTAGAACAAGTG+GGG | + | chr6_3:7356156-7356175 | None:intergenic | 40.0% | |
| CATCCATGCTTAGAACAAGT+GGG | + | chr6_3:7356157-7356176 | None:intergenic | 40.0% | |
| TCATCCATGCTTAGAACAAG+TGG | + | chr6_3:7356158-7356177 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_3:7356201-7356220 | Msa0936550:CDS | 40.0% | |
| !! | TGAGTTCACGATGCTTTTTG+TGG | + | chr6_3:7356310-7356329 | None:intergenic | 40.0% |
| CCAATTACTACTAGGGTTGT+TGG | + | chr6_3:7356411-7356430 | None:intergenic | 40.0% | |
| CCAACAACCCTAGTAGTAAT+TGG | - | chr6_3:7356408-7356427 | Msa0936550:CDS | 40.0% | |
| ACAACCCTAGTAGTAATTGG+TGG | - | chr6_3:7356411-7356430 | Msa0936550:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_3:7356467-7356486 | Msa0936550:CDS | 40.0% | |
| ! | AAGATTTGGAACCCTAGCTA+TGG | - | chr6_3:7356481-7356500 | Msa0936550:CDS | 40.0% |
| !!! | CTTTTCTGGTTCCATAGCTA+GGG | + | chr6_3:7356495-7356514 | None:intergenic | 40.0% |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_3:7356496-7356515 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCACC+AGG | - | chr6_3:7356599-7356618 | Msa0936550:CDS | 40.0% | |
| ! | ATGGTAGATTTTCCAGTTCC+TGG | + | chr6_3:7356620-7356639 | None:intergenic | 40.0% |
| TTCTTTCTTCTTCCTTTGCC+CGG | + | chr6_3:7356795-7356814 | None:intergenic | 40.0% | |
| TTGATCCTGCTCTTATAAGG+AGG | - | chr6_3:7356990-7357009 | Msa0936550:CDS | 40.0% | |
| TGATCCTGCTCTTATAAGGA+GGG | - | chr6_3:7356991-7357010 | Msa0936550:CDS | 40.0% | |
| TCTTATAAGGAGGGGAAGAA+TGG | - | chr6_3:7357000-7357019 | Msa0936550:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_3:7357157-7357176 | None:intergenic | 40.0% | |
| TGCAAAGAAAAAGGATGAGG+AGG | - | chr6_3:7357243-7357262 | Msa0936550:CDS | 40.0% | |
| AAGGAAAAAGGTAGAGGATG+AGG | - | chr6_3:7357270-7357289 | Msa0936550:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | - | chr6_3:7357376-7357395 | Msa0936550:CDS | 40.0% | |
| ! | GAGAATGGTGTCAAAGACAA+TGG | - | chr6_3:7357391-7357410 | Msa0936550:CDS | 40.0% |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_3:7355884-7355903 | Msa0936550:CDS | 40.0% | |
| AACATGCACGAAGATAAGGT+GGG | + | chr6_3:7355950-7355969 | None:intergenic | 40.0% | |
| AAACATGCACGAAGATAAGG+TGG | + | chr6_3:7355951-7355970 | None:intergenic | 40.0% | |
| ATCCATGCTTAGAACAAGTG+GGG | + | chr6_3:7356156-7356175 | None:intergenic | 40.0% | |
| CATCCATGCTTAGAACAAGT+GGG | + | chr6_3:7356157-7356176 | None:intergenic | 40.0% | |
| TCATCCATGCTTAGAACAAG+TGG | + | chr6_3:7356158-7356177 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_3:7356201-7356220 | Msa0936550:CDS | 40.0% | |
| !! | TGAGTTCACGATGCTTTTTG+TGG | + | chr6_3:7356310-7356329 | None:intergenic | 40.0% |
| CCAATTACTACTAGGGTTGT+TGG | + | chr6_3:7356411-7356430 | None:intergenic | 40.0% | |
| CCAACAACCCTAGTAGTAAT+TGG | - | chr6_3:7356408-7356427 | Msa0936550:CDS | 40.0% | |
| ACAACCCTAGTAGTAATTGG+TGG | - | chr6_3:7356411-7356430 | Msa0936550:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_3:7356467-7356486 | Msa0936550:CDS | 40.0% | |
| ! | AAGATTTGGAACCCTAGCTA+TGG | - | chr6_3:7356481-7356500 | Msa0936550:CDS | 40.0% |
| !!! | CTTTTCTGGTTCCATAGCTA+GGG | + | chr6_3:7356495-7356514 | None:intergenic | 40.0% |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_3:7356496-7356515 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCACC+AGG | - | chr6_3:7356599-7356618 | Msa0936550:CDS | 40.0% | |
| ! | ATGGTAGATTTTCCAGTTCC+TGG | + | chr6_3:7356620-7356639 | None:intergenic | 40.0% |
| TTCTTTCTTCTTCCTTTGCC+CGG | + | chr6_3:7356795-7356814 | None:intergenic | 40.0% | |
| TTGATCCTGCTCTTATAAGG+AGG | - | chr6_3:7356990-7357009 | Msa0936550:CDS | 40.0% | |
| TGATCCTGCTCTTATAAGGA+GGG | - | chr6_3:7356991-7357010 | Msa0936550:CDS | 40.0% | |
| TCTTATAAGGAGGGGAAGAA+TGG | - | chr6_3:7357000-7357019 | Msa0936550:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_3:7357157-7357176 | None:intergenic | 40.0% | |
| TGCAAAGAAAAAGGATGAGG+AGG | - | chr6_3:7357243-7357262 | Msa0936550:CDS | 40.0% | |
| AAGGAAAAAGGTAGAGGATG+AGG | - | chr6_3:7357270-7357289 | Msa0936550:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | - | chr6_3:7357376-7357395 | Msa0936550:CDS | 40.0% | |
| ! | GAGAATGGTGTCAAAGACAA+TGG | - | chr6_3:7357391-7357410 | Msa0936550:CDS | 40.0% |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_3:7355862-7355881 | Msa0936550:CDS | 45.0% | |
| ! | AACCCCACTTGTTCTAAGCA+TGG | - | chr6_3:7356151-7356170 | Msa0936550:CDS | 45.0% |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_3:7356575-7356594 | Msa0936550:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+TGG | + | chr6_3:7356617-7356636 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | - | chr6_3:7356773-7356792 | Msa0936550:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | - | chr6_3:7356774-7356793 | Msa0936550:CDS | 45.0% | |
| GATGGAATTTGGTCAGCTTG+TGG | - | chr6_3:7356923-7356942 | Msa0936550:CDS | 45.0% | |
| GATCCTGCTCTTATAAGGAG+GGG | - | chr6_3:7356992-7357011 | Msa0936550:CDS | 45.0% | |
| AAAAGGATGAGGAGGAAGCA+AGG | - | chr6_3:7357251-7357270 | Msa0936550:CDS | 45.0% | |
| TGAGGAGGAAGCAAGGAAAA+AGG | - | chr6_3:7357258-7357277 | Msa0936550:CDS | 45.0% | |
| GGAAGCAAGGAAAAAGGTAG+AGG | - | chr6_3:7357264-7357283 | Msa0936550:CDS | 45.0% | |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_3:7355862-7355881 | Msa0936550:CDS | 45.0% | |
| ! | AACCCCACTTGTTCTAAGCA+TGG | - | chr6_3:7356151-7356170 | Msa0936550:CDS | 45.0% |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_3:7356575-7356594 | Msa0936550:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+TGG | + | chr6_3:7356617-7356636 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+CGG | - | chr6_3:7356773-7356792 | Msa0936550:CDS | 45.0% | |
| ATTGTTCTCTCGATCTCACC+GGG | - | chr6_3:7356774-7356793 | Msa0936550:CDS | 45.0% | |
| GATGGAATTTGGTCAGCTTG+TGG | - | chr6_3:7356923-7356942 | Msa0936550:CDS | 45.0% | |
| GATCCTGCTCTTATAAGGAG+GGG | - | chr6_3:7356992-7357011 | Msa0936550:CDS | 45.0% | |
| AAAAGGATGAGGAGGAAGCA+AGG | - | chr6_3:7357251-7357270 | Msa0936550:CDS | 45.0% | |
| TGAGGAGGAAGCAAGGAAAA+AGG | - | chr6_3:7357258-7357277 | Msa0936550:CDS | 45.0% | |
| GGAAGCAAGGAAAAAGGTAG+AGG | - | chr6_3:7357264-7357283 | Msa0936550:CDS | 45.0% | |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_3:7355873-7355892 | Msa0936550:CDS | 50.0% | |
| CAACTAGGTTCAATCACGGC+TGG | - | chr6_3:7355888-7355907 | Msa0936550:CDS | 50.0% | |
| GCTAGGGTTCCAAATCTTGC+AGG | + | chr6_3:7356479-7356498 | None:intergenic | 50.0% | |
| CTTTATGGTCCACCAGGAAC+TGG | - | chr6_3:7356605-7356624 | Msa0936550:CDS | 50.0% | |
| CTTCCCCTCCTTATAAGAGC+AGG | + | chr6_3:7356998-7357017 | None:intergenic | 50.0% | |
| AGGTAGAGGATGAGGAAGCT+CGG | - | chr6_3:7357278-7357297 | Msa0936550:CDS | 50.0% | |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_3:7355873-7355892 | Msa0936550:CDS | 50.0% | |
| CAACTAGGTTCAATCACGGC+TGG | - | chr6_3:7355888-7355907 | Msa0936550:CDS | 50.0% | |
| GCTAGGGTTCCAAATCTTGC+AGG | + | chr6_3:7356479-7356498 | None:intergenic | 50.0% | |
| CTTTATGGTCCACCAGGAAC+TGG | - | chr6_3:7356605-7356624 | Msa0936550:CDS | 50.0% | |
| CTTCCCCTCCTTATAAGAGC+AGG | + | chr6_3:7356998-7357017 | None:intergenic | 50.0% | |
| AGGTAGAGGATGAGGAAGCT+CGG | - | chr6_3:7357278-7357297 | Msa0936550:CDS | 50.0% | |
| GGTCAGCTTGTGGATCAGAG+AGG | - | chr6_3:7356933-7356952 | Msa0936550:CDS | 55.0% | |
| GGTCAGCTTGTGGATCAGAG+AGG | - | chr6_3:7356933-7356952 | Msa0936550:CDS | 55.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | - | chr6_3:7356780-7356799 | Msa0936550:CDS | 60.0% | |
| GGATGAGGAAGCTCGGCTCA+AGG | - | chr6_3:7357285-7357304 | Msa0936550:CDS | 60.0% | |
| CTCTCGATCTCACCGGGCAA+AGG | - | chr6_3:7356780-7356799 | Msa0936550:CDS | 60.0% | |
| GGATGAGGAAGCTCGGCTCA+AGG | - | chr6_3:7357285-7357304 | Msa0936550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 7355858 | 7357426 | 7355858 | ID=Msa0936550;Name=Msa0936550 |
| chr6_3 | mRNA | 7355858 | 7357426 | 7355858 | ID=Msa0936550-mRNA-1;Parent=Msa0936550;Name=Msa0936550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|522 |
| chr6_3 | exon | 7355858 | 7357426 | 7355858 | ID=Msa0936550-mRNA-1:exon:2386;Parent=Msa0936550-mRNA-1 |
| chr6_3 | CDS | 7355858 | 7357426 | 7355858 | ID=Msa0936550-mRNA-1:cds;Parent=Msa0936550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
