Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972770 | XP_003618326.2 | 84.441 | 572 | 84 | 3 | 1 | 569 | 7 | 576 | 0.0 | 955 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972770 | sp|Q4F883|SG101_ARATH | 37.955 | 577 | 280 | 17 | 4 | 557 | 9 | 530 | 7.70e-104 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972770 | G7KIV2 | 84.441 | 572 | 84 | 3 | 1 | 569 | 7 | 576 | 0.0 | 955 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013280 | Msa0972770 | 0.807189 | 5.706866e-50 | -8.615850e-47 |
| Msa0085290 | Msa0972770 | 0.830427 | 2.954233e-55 | -8.615850e-47 |
| Msa0092910 | Msa0972770 | 0.801369 | 9.299752e-49 | -8.615850e-47 |
| Msa0825870 | Msa0972770 | 0.812128 | 4.953535e-51 | -8.615850e-47 |
| Msa0131420 | Msa0972770 | 0.821079 | 4.886287e-53 | -8.615850e-47 |
| Msa0187830 | Msa0972770 | 0.809353 | 1.973273e-50 | -8.615850e-47 |
| Msa0229590 | Msa0972770 | 0.807596 | 4.679023e-50 | -8.615850e-47 |
| Msa0229710 | Msa0972770 | 0.812691 | 3.732478e-51 | -8.615850e-47 |
| Msa0377800 | Msa0972770 | 0.824393 | 8.272087e-54 | -8.615850e-47 |
| Msa0387660 | Msa0972770 | 0.814289 | 1.661636e-51 | -8.615850e-47 |
| Msa0387690 | Msa0972770 | 0.821983 | 3.020403e-53 | -8.615850e-47 |
| Msa0419670 | Msa0972770 | 0.853423 | 2.413838e-61 | -8.615850e-47 |
| Msa0431440 | Msa0972770 | 0.809656 | 1.698527e-50 | -8.615850e-47 |
| Msa0455760 | Msa0972770 | 0.804506 | 2.090683e-49 | -8.615850e-47 |
| Msa0466010 | Msa0972770 | 0.864696 | 1.009659e-64 | -8.615850e-47 |
| Msa0472910 | Msa0972770 | 0.810761 | 9.813735e-51 | -8.615850e-47 |
| Msa0476330 | Msa0972770 | 0.827979 | 1.159826e-54 | -8.615850e-47 |
| Msa0271550 | Msa0972770 | 0.818101 | 2.336565e-52 | -8.615850e-47 |
| Msa0281930 | Msa0972770 | 0.802804 | 4.714635e-49 | -8.615850e-47 |
| Msa0506300 | Msa0972770 | 0.822599 | 2.173217e-53 | -8.615850e-47 |
| Msa0517570 | Msa0972770 | 0.809107 | 2.227609e-50 | -8.615850e-47 |
| Msa0520330 | Msa0972770 | 0.816509 | 5.331702e-52 | -8.615850e-47 |
| Msa0574570 | Msa0972770 | 0.820318 | 7.306535e-53 | -8.615850e-47 |
| Msa0580920 | Msa0972770 | 0.832681 | 8.228890e-56 | -8.615850e-47 |
| Msa0870060 | Msa0972770 | 0.918843 | 9.444455e-87 | -8.615850e-47 |
| Msa0874630 | Msa0972770 | 0.803992 | 2.675287e-49 | -8.615850e-47 |
| Msa0903370 | Msa0972770 | 0.818587 | 1.813033e-52 | -8.615850e-47 |
| Msa0935770 | Msa0972770 | 0.843390 | 1.443158e-58 | -8.615850e-47 |
| Msa0936530 | Msa0972770 | 0.853434 | 2.395887e-61 | -8.615850e-47 |
| Msa0936550 | Msa0972770 | 0.830065 | 3.622536e-55 | -8.615850e-47 |
| Msa0957830 | Msa0972770 | 0.810062 | 1.389127e-50 | -8.615850e-47 |
| Msa0958070 | Msa0972770 | 0.805790 | 1.125957e-49 | -8.615850e-47 |
| Msa0972770 | Msa0973520 | 0.849918 | 2.374735e-60 | -8.615850e-47 |
| Msa0972770 | Msa0976290 | 0.813064 | 3.092569e-51 | -8.615850e-47 |
| Msa0972770 | Msa0982780 | 0.871237 | 7.962152e-67 | -8.615850e-47 |
| Msa0972770 | Msa1073660 | 0.810242 | 1.270338e-50 | -8.615850e-47 |
| Msa0972770 | Msa1100930 | 0.809436 | 1.893682e-50 | -8.615850e-47 |
| Msa0972770 | Msa1130390 | 0.834663 | 2.630643e-56 | -8.615850e-47 |
| Msa0972770 | Msa1201200 | 0.846461 | 2.141202e-59 | -8.615850e-47 |
| Msa0972770 | Msa1201230 | 0.827490 | 1.519968e-54 | -8.615850e-47 |
| Msa0972770 | Msa1210110 | 0.808667 | 2.767462e-50 | -8.615850e-47 |
| Msa0972770 | Msa1236730 | 0.841050 | 6.009827e-58 | -8.615850e-47 |
| Msa0972770 | Msa1252960 | 0.828830 | 7.227887e-55 | -8.615850e-47 |
| Msa0972770 | Msa1256410 | 0.802453 | 5.571087e-49 | -8.615850e-47 |
| Msa0972770 | Msa1293940 | 0.807166 | 5.771051e-50 | -8.615850e-47 |
| Msa0972770 | Msa1317130 | 0.818538 | 1.860282e-52 | -8.615850e-47 |
| Msa0972770 | Msa1344890 | 0.800706 | 1.270903e-48 | -8.615850e-47 |
| Msa0972770 | Msa1408180 | 0.837157 | 6.132321e-57 | -8.615850e-47 |
| Msa0972770 | Msa1448980 | 0.830697 | 2.538430e-55 | -8.615850e-47 |
| Msa0972770 | Msa1458510 | 0.891107 | 5.368513e-74 | -8.615850e-47 |
| Msa0972770 | Msa1461550 | 0.803019 | 4.257200e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972770 | MtrunA17_Chr6g0451511 | 84.615 | 572 | 84 | 2 | 1 | 569 | 7 | 577 | 0.0 | 950 |
| Msa0972770 | MtrunA17_Chr3g0107671 | 55.190 | 578 | 239 | 9 | 1 | 568 | 7 | 574 | 0.0 | 621 |
| Msa0972770 | MtrunA17_Chr6g0451531 | 57.388 | 582 | 220 | 15 | 1 | 568 | 9 | 576 | 0.0 | 618 |
| Msa0972770 | MtrunA17_Chr6g0451541 | 55.017 | 578 | 234 | 11 | 1 | 564 | 9 | 574 | 0.0 | 611 |
| Msa0972770 | MtrunA17_Chr6g0451561 | 56.432 | 583 | 224 | 15 | 1 | 568 | 7 | 574 | 0.0 | 595 |
| Msa0972770 | MtrunA17_Chr3g0107661 | 55.385 | 195 | 71 | 5 | 1 | 186 | 7 | 194 | 2.88e-53 | 182 |
| Msa0972770 | MtrunA17_Chr3g0107651 | 52.206 | 136 | 65 | 0 | 271 | 406 | 1 | 136 | 2.61e-41 | 145 |
| Msa0972770 | MtrunA17_Chr8g0384621 | 25.989 | 354 | 225 | 12 | 205 | 538 | 274 | 610 | 2.12e-21 | 98.2 |
| Msa0972770 | MtrunA17_Chr3g0118251 | 23.099 | 355 | 217 | 12 | 203 | 532 | 276 | 599 | 4.35e-16 | 81.6 |
| Msa0972770 | MtrunA17_Chr3g0118541 | 24.000 | 300 | 174 | 10 | 203 | 476 | 287 | 558 | 2.52e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972770 | AT5G14930.2 | 37.955 | 577 | 280 | 17 | 4 | 557 | 9 | 530 | 7.83e-105 | 326 |
| Msa0972770 | AT5G14930.3 | 38.525 | 244 | 121 | 6 | 4 | 231 | 9 | 239 | 1.47e-37 | 139 |
| Msa0972770 | AT3G52430.1 | 27.294 | 425 | 280 | 11 | 124 | 537 | 112 | 518 | 2.43e-35 | 140 |
| Msa0972770 | AT3G48080.1 | 24.451 | 364 | 218 | 13 | 203 | 533 | 265 | 604 | 7.54e-11 | 65.5 |
Find 101 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACCAAAGTCAGGATTT+TGG | 0.216947 | 6_4:+5039597 | Msa0972770:CDS |
| TAACTCTAGATTCTTGCTTT+TGG | 0.226739 | 6_4:+5041166 | Msa0972770:CDS |
| ATTGAATTCAATTTCCTTGA+TGG | 0.240277 | 6_4:-5040745 | None:intergenic |
| TGAAAATATTGGATTGCTTT+TGG | 0.264679 | 6_4:-5038611 | None:intergenic |
| GCAACATTTGTGACAAGTTC+TGG | 0.274364 | 6_4:+5038370 | Msa0972770:CDS |
| GAGTCAATATAAGAAGATTA+TGG | 0.283139 | 6_4:+5041371 | Msa0972770:CDS |
| CTGGTCTTCTTCGAAAATTA+TGG | 0.301057 | 6_4:+5038389 | Msa0972770:CDS |
| TTCACTTTATTACTATTAGA+TGG | 0.321607 | 6_4:+5039303 | Msa0972770:CDS |
| TGTCAATCTTCAATCTGAAT+TGG | 0.323046 | 6_4:+5038534 | Msa0972770:CDS |
| TCCCCTAAGTTGATAATTAC+TGG | 0.346310 | 6_4:+5039249 | Msa0972770:CDS |
| TCTACGGTGGAACAACTTAT+AGG | 0.346860 | 6_4:+5040977 | Msa0972770:CDS |
| CCATATCACACAGTTCTTCA+TGG | 0.348942 | 6_4:+5039403 | Msa0972770:CDS |
| GGATGAGGCAACAAGAAAAT+TGG | 0.349128 | 6_4:+5041257 | Msa0972770:CDS |
| AAACCTCTTTGCATCACCTT+TGG | 0.355006 | 6_4:+5039345 | Msa0972770:CDS |
| GAATTCAATGAAGATAGATT+TGG | 0.365121 | 6_4:+5040759 | Msa0972770:CDS |
| TGTTGCCTCATCCCTTTCAA+TGG | 0.377384 | 6_4:-5041247 | None:intergenic |
| TTGCAAGGACACCGCAAATC+AGG | 0.381433 | 6_4:+5039668 | Msa0972770:CDS |
| AGTCCAGTAATTATCAACTT+AGG | 0.381788 | 6_4:-5039252 | None:intergenic |
| GTCCAGTAATTATCAACTTA+GGG | 0.386336 | 6_4:-5039251 | None:intergenic |
| ATAATTACTGGACTTGCTCT+TGG | 0.394848 | 6_4:+5039261 | Msa0972770:CDS |
| CCATGAAGAACTGTGTGATA+TGG | 0.402623 | 6_4:-5039403 | None:intergenic |
| GTAATGTTAAGTGAAAATAT+TGG | 0.404625 | 6_4:-5038622 | None:intergenic |
| TGGACCAAGACGCAGTTCTA+TGG | 0.405092 | 6_4:+5040863 | Msa0972770:CDS |
| ATATTGTAACTTTGTAAGAA+TGG | 0.406519 | 6_4:+5041593 | Msa0972770:three_prime_UTR |
| AGAACTGCTAAAACAGAATC+AGG | 0.410566 | 6_4:-5039561 | None:intergenic |
| AATGAAATTTCTATCACCTT+AGG | 0.414082 | 6_4:+5041525 | Msa0972770:three_prime_UTR |
| TAGATTTGGCTAACTTTGAA+TGG | 0.418573 | 6_4:+5040773 | Msa0972770:CDS |
| AAGAATTGTCACCATCTTTG+TGG | 0.419618 | 6_4:+5041485 | Msa0972770:exon |
| CATTACTTTGGTAGAAAAGA+TGG | 0.421049 | 6_4:+5040684 | Msa0972770:CDS |
| TAGATTTAGCAGTGGAATAG+AGG | 0.436219 | 6_4:+5038345 | None:intergenic |
| ATCTAGTCACTACAAACAAT+TGG | 0.438035 | 6_4:+5041071 | Msa0972770:CDS |
| TAGCGAATCAGAATAATTCA+TGG | 0.440052 | 6_4:-5039697 | None:intergenic |
| AGTCAATATAAGAAGATTAT+GGG | 0.443423 | 6_4:+5041372 | Msa0972770:CDS |
| ACCTTTGGTTCTCCACTAGT+TGG | 0.448784 | 6_4:+5039360 | Msa0972770:CDS |
| GAATTATTCTGATTCGCTAC+AGG | 0.453839 | 6_4:+5039701 | Msa0972770:CDS |
| AAAATTTCATCAACCAGAAA+AGG | 0.455883 | 6_4:+5040710 | Msa0972770:CDS |
| GAATTTGAGAATTATGTGTA+TGG | 0.458115 | 6_4:+5041282 | Msa0972770:CDS |
| CCTTAGTGAAAGTAGCTACA+TGG | 0.465698 | 6_4:+5041341 | Msa0972770:CDS |
| TAGTATTGAGCTATATCTAA+TGG | 0.471025 | 6_4:-5041012 | None:intergenic |
| GGAAATTGACATCATTACTT+TGG | 0.473837 | 6_4:+5040672 | Msa0972770:CDS |
| CTTCGTACTCGTTGGCTCTA+CGG | 0.476860 | 6_4:+5040961 | Msa0972770:CDS |
| AATTATAATGTGCAATATGT+TGG | 0.481343 | 6_4:+5041441 | Msa0972770:CDS |
| CAAAATCCTGACTTTGGTCA+TGG | 0.483292 | 6_4:-5039596 | None:intergenic |
| GAAAACAGTTATAGATAAAG+TGG | 0.486085 | 6_4:-5041619 | None:intergenic |
| CAAGATAATGAACTTAAGAA+TGG | 0.487094 | 6_4:+5040843 | Msa0972770:CDS |
| CAAAATCTAGTGCCATTGAA+AGG | 0.491582 | 6_4:+5041235 | Msa0972770:CDS |
| TTATTTGAACCAGTTGTTGC+TGG | 0.492187 | 6_4:-5041114 | None:intergenic |
| GTAGAAGCACCAGCAACAAC+TGG | 0.493229 | 6_4:+5041105 | Msa0972770:CDS |
| TAGAACCAAAATCCTGACTT+TGG | 0.493768 | 6_4:-5039602 | None:intergenic |
| GACATTGTTTCAAATGTTGT+TGG | 0.497217 | 6_4:+5038427 | Msa0972770:CDS |
| ATCAATCCATGACCAAAGTC+AGG | 0.497775 | 6_4:+5039590 | Msa0972770:CDS |
| GTGATGAACTTCCTTGGAAG+TGG | 0.499701 | 6_4:-5039462 | None:intergenic |
| GAAATTTCTATCACCTTAGG+TGG | 0.501227 | 6_4:+5041528 | Msa0972770:three_prime_UTR |
| ACTACAAACAATTGGAGGAT+TGG | 0.502313 | 6_4:+5041079 | Msa0972770:CDS |
| AGCGACGCGCCTTCTTTCTG+AGG | 0.504188 | 6_4:-5040940 | None:intergenic |
| ATTACTGGACTTGCTCTTGG+AGG | 0.504250 | 6_4:+5039264 | Msa0972770:CDS |
| TGATCTGTGATGAACTTCCT+TGG | 0.510326 | 6_4:-5039468 | None:intergenic |
| ACTAGTTCTTATGTGCCCTT+CGG | 0.513625 | 6_4:+5039492 | Msa0972770:CDS |
| TTCGCCATAGAACTGCGTCT+TGG | 0.514149 | 6_4:-5040867 | None:intergenic |
| CATGGCTTGAACCTGATTTG+CGG | 0.518067 | 6_4:-5039679 | None:intergenic |
| TTGGTAACAATGGACTATCA+TGG | 0.521505 | 6_4:+5038446 | Msa0972770:CDS |
| GATTCGCTACAGGCATGTAT+CGG | 0.528548 | 6_4:+5039711 | Msa0972770:CDS |
| TTAATGAAGCCTCAGAAAGA+AGG | 0.529368 | 6_4:+5040931 | Msa0972770:CDS |
| CCTTGCAAATTGCTTTGCGA+TGG | 0.530888 | 6_4:-5039653 | None:intergenic |
| CTTTCACTAAGGAAAATCTC+TGG | 0.532183 | 6_4:-5041330 | None:intergenic |
| ATGTATCGGCTTGCAATTGT+CGG | 0.536316 | 6_4:+5039725 | Msa0972770:CDS |
| AAAATCTAGTGCCATTGAAA+GGG | 0.539679 | 6_4:+5041236 | Msa0972770:CDS |
| TCAAATGTTGTTGGTAACAA+TGG | 0.541619 | 6_4:+5038436 | Msa0972770:CDS |
| AGGATTGTCACCACATATGC+AGG | 0.547109 | 6_4:+5039752 | Msa0972770:CDS |
| CCATGTAGCTACTTTCACTA+AGG | 0.550704 | 6_4:-5041341 | None:intergenic |
| TATAATGTGCAATATGTTGG+AGG | 0.555922 | 6_4:+5041444 | Msa0972770:CDS |
| GGAAACAATATGATCCATCA+AGG | 0.561154 | 6_4:+5040731 | Msa0972770:CDS |
| TGGAACAACTTATAGGAGAA+TGG | 0.561486 | 6_4:+5040984 | Msa0972770:CDS |
| TAATGTTACTAGAGAGAATG+TGG | 0.567305 | 6_4:+5041134 | Msa0972770:CDS |
| TAGTCACTACAAACAATTGG+AGG | 0.569273 | 6_4:+5041074 | Msa0972770:CDS |
| CTTGCAATGATCCACTTCCA+AGG | 0.574325 | 6_4:+5039451 | Msa0972770:CDS |
| TCTCCACTAGTTGGTGACAA+AGG | 0.579237 | 6_4:+5039369 | Msa0972770:CDS |
| AGTTACAAAAGTTCCACCTA+AGG | 0.580957 | 6_4:-5041541 | None:intergenic |
| TGTTAAGCTACCTGCATATG+TGG | 0.585582 | 6_4:-5039762 | None:intergenic |
| GGTTTCATCTACTAAACTCA+AGG | 0.587817 | 6_4:+5038555 | Msa0972770:CDS |
| ACATTGATAAACCACAAAGA+TGG | 0.591219 | 6_4:-5041496 | None:intergenic |
| TAGTGCCATTGAAAGGGATG+AGG | 0.595548 | 6_4:+5041242 | Msa0972770:CDS |
| GGCTTGCAATTGTCGGCACT+AGG | 0.597679 | 6_4:+5039732 | Msa0972770:CDS |
| GTGAAAGTAGCTACATGGCA+TGG | 0.601444 | 6_4:+5041346 | Msa0972770:CDS |
| TATGGTTATAGATTTAGCAG+TGG | 0.604929 | 6_4:+5038337 | None:intergenic |
| ACCAACTAGTGGAGAACCAA+AGG | 0.608258 | 6_4:-5039361 | None:intergenic |
| AATCCTTTGTCACCAACTAG+TGG | 0.611681 | 6_4:-5039372 | None:intergenic |
| ATAGCTCAATACTATCTCCA+TGG | 0.616214 | 6_4:+5041021 | Msa0972770:CDS |
| CGTACTCGTTGGCTCTACGG+TGG | 0.616602 | 6_4:+5040964 | Msa0972770:CDS |
| TTATGTGTATGGATTGCTCA+AGG | 0.625770 | 6_4:+5041293 | Msa0972770:CDS |
| CACACGAGAAATGTTCCGAA+GGG | 0.637916 | 6_4:-5039507 | None:intergenic |
| TCCAGTAATTATCAACTTAG+GGG | 0.638938 | 6_4:-5039250 | None:intergenic |
| GCTTGATCAATTGAAGTCTG+AGG | 0.639656 | 6_4:+5038678 | Msa0972770:CDS |
| GAACCAAAGGTGATGCAAAG+AGG | 0.640380 | 6_4:-5039348 | None:intergenic |
| CCATCGCAAAGCAATTTGCA+AGG | 0.644458 | 6_4:+5039653 | Msa0972770:CDS |
| ACACACGAGAAATGTTCCGA+AGG | 0.646058 | 6_4:-5039508 | None:intergenic |
| TGAAGATTGACAGAATTCGA+CGG | 0.653322 | 6_4:-5038523 | None:intergenic |
| TCACATAGTCTTTACCACCA+TGG | 0.654607 | 6_4:-5041038 | None:intergenic |
| AAAGTAGCTACATGGCATGG+TGG | 0.693626 | 6_4:+5041349 | Msa0972770:CDS |
| GCTCAATACTATCTCCATGG+TGG | 0.706165 | 6_4:+5041024 | Msa0972770:CDS |
| ATTGACAGAATTCGACGGTG+CGG | 0.733423 | 6_4:-5038518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATGTTAAGTGAAAATAT+TGG | - | chr6_4:5038625-5038644 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTCCTATGAAA+AGG | + | chr6_4:5038894-5038913 | Msa0972770:intron | 20.0% |
| !! | TATTATGCTTGATCAAATTA+AGG | - | chr6_4:5039206-5039225 | None:intergenic | 20.0% |
| !! | TTCACTTTATTACTATTAGA+TGG | + | chr6_4:5039303-5039322 | Msa0972770:CDS | 20.0% |
| !!! | TGGGTATAATTTTTTTTTTG+AGG | + | chr6_4:5040302-5040321 | Msa0972770:intron | 20.0% |
| !! | TGAAACAGATCAATATAAAT+TGG | - | chr6_4:5040617-5040636 | None:intergenic | 20.0% |
| !! | AGTCAATATAAGAAGATTAT+GGG | + | chr6_4:5041372-5041391 | Msa0972770:CDS | 20.0% |
| !! | AATTATAATGTGCAATATGT+TGG | + | chr6_4:5041441-5041460 | Msa0972770:CDS | 20.0% |
| !! | ATATTGTAACTTTGTAAGAA+TGG | + | chr6_4:5041593-5041612 | Msa0972770:three_prime_UTR | 20.0% |
| !! | TGAAAATATTGGATTGCTTT+TGG | - | chr6_4:5038614-5038633 | None:intergenic | 25.0% |
| ! | TAAGAGTTAGAATAATGACA+AGG | - | chr6_4:5038714-5038733 | None:intergenic | 25.0% |
| ! | GGAACATATAAAAATTGCAA+TGG | - | chr6_4:5038740-5038759 | None:intergenic | 25.0% |
| ! | ATGTGTTTAAGTAGTTAGTA+CGG | + | chr6_4:5038783-5038802 | Msa0972770:intron | 25.0% |
| !! | CTATATTATCACCTTTTCAT+AGG | - | chr6_4:5038908-5038927 | None:intergenic | 25.0% |
| ! | ATGAAAAGGTGATAATATAG+TGG | + | chr6_4:5038908-5038927 | Msa0972770:intron | 25.0% |
| ! | AGTATACCATCTTAGAATTT+GGG | - | chr6_4:5039939-5039958 | None:intergenic | 25.0% |
| ! | TAGTATACCATCTTAGAATT+TGG | - | chr6_4:5039940-5039959 | None:intergenic | 25.0% |
| ! | TAGTTTATCCAAGGTTTATT+AGG | + | chr6_4:5039958-5039977 | Msa0972770:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | - | chr6_4:5040056-5040075 | None:intergenic | 25.0% |
| !!! | TTTAATTTTCCTCTTGCTTT+TGG | - | chr6_4:5040202-5040221 | None:intergenic | 25.0% |
| ! | AAAGACTCTATTTGAAGAAA+AGG | - | chr6_4:5040514-5040533 | None:intergenic | 25.0% |
| ! | ACACGATAACTCTAATAATA+AGG | - | chr6_4:5040568-5040587 | None:intergenic | 25.0% |
| ! | AAAATTTCATCAACCAGAAA+AGG | + | chr6_4:5040710-5040729 | Msa0972770:CDS | 25.0% |
| ! | ATTGAATTCAATTTCCTTGA+TGG | - | chr6_4:5040748-5040767 | None:intergenic | 25.0% |
| ! | GAATTCAATGAAGATAGATT+TGG | + | chr6_4:5040759-5040778 | Msa0972770:CDS | 25.0% |
| ! | ATTCGAAAAAGAGAAACATA+GGG | + | chr6_4:5040806-5040825 | Msa0972770:CDS | 25.0% |
| ! | CAAGATAATGAACTTAAGAA+TGG | + | chr6_4:5040843-5040862 | Msa0972770:CDS | 25.0% |
| !! | TAGTATTGAGCTATATCTAA+TGG | - | chr6_4:5041015-5041034 | None:intergenic | 25.0% |
| ! | GAATTTGAGAATTATGTGTA+TGG | + | chr6_4:5041282-5041301 | Msa0972770:CDS | 25.0% |
| ! | GAGTCAATATAAGAAGATTA+TGG | + | chr6_4:5041371-5041390 | Msa0972770:CDS | 25.0% |
| ! | AATGAAATTTCTATCACCTT+AGG | + | chr6_4:5041525-5041544 | Msa0972770:three_prime_UTR | 25.0% |
| ! | GAAAACAGTTATAGATAAAG+TGG | - | chr6_4:5041622-5041641 | None:intergenic | 25.0% |
| GACATTGTTTCAAATGTTGT+TGG | + | chr6_4:5038427-5038446 | Msa0972770:CDS | 30.0% | |
| !! | TCAAATGTTGTTGGTAACAA+TGG | + | chr6_4:5038436-5038455 | Msa0972770:CDS | 30.0% |
| TGTCAATCTTCAATCTGAAT+TGG | + | chr6_4:5038534-5038553 | Msa0972770:CDS | 30.0% | |
| ACGTTGAAGGAATTCTAATT+AGG | + | chr6_4:5038821-5038840 | Msa0972770:intron | 30.0% | |
| TTGAAGGAATTCTAATTAGG+AGG | + | chr6_4:5038824-5038843 | Msa0972770:intron | 30.0% | |
| AGTCTGACAAAAAGTTGTTT+CGG | + | chr6_4:5038991-5039010 | Msa0972770:intron | 30.0% | |
| ! | TGTTTCTATAAGCTAGTGAA+TGG | - | chr6_4:5039083-5039102 | None:intergenic | 30.0% |
| GCATAATAACATCTTAATGC+AGG | + | chr6_4:5039218-5039237 | Msa0972770:intron | 30.0% | |
| TCCAGTAATTATCAACTTAG+GGG | - | chr6_4:5039253-5039272 | None:intergenic | 30.0% | |
| GTCCAGTAATTATCAACTTA+GGG | - | chr6_4:5039254-5039273 | None:intergenic | 30.0% | |
| AGTCCAGTAATTATCAACTT+AGG | - | chr6_4:5039255-5039274 | None:intergenic | 30.0% | |
| !!! | GATTTTGGTTCTATAGAGTA+TGG | + | chr6_4:5039612-5039631 | Msa0972770:CDS | 30.0% |
| TAGCGAATCAGAATAATTCA+TGG | - | chr6_4:5039700-5039719 | None:intergenic | 30.0% | |
| GAAAAGTCTCACATTTGATA+AGG | + | chr6_4:5039829-5039848 | Msa0972770:intron | 30.0% | |
| AAAACGTGCATGTTAATAAG+TGG | + | chr6_4:5039861-5039880 | Msa0972770:intron | 30.0% | |
| !! | ACCTTACAAATCGATTTTGT+AGG | + | chr6_4:5039896-5039915 | Msa0972770:intron | 30.0% |
| !! | TCCTACAAAATCGATTTGTA+AGG | - | chr6_4:5039900-5039919 | None:intergenic | 30.0% |
| ! | GATTTTGTAGGAGTTGAATT+AGG | + | chr6_4:5039908-5039927 | Msa0972770:intron | 30.0% |
| ! | ATGGTATACTAGTTTATCCA+AGG | + | chr6_4:5039949-5039968 | Msa0972770:intron | 30.0% |
| AAATAACTACCGTATACATG+AGG | + | chr6_4:5040161-5040180 | Msa0972770:intron | 30.0% | |
| GTATACTATCCTGCAATAAA+GGG | - | chr6_4:5040264-5040283 | None:intergenic | 30.0% | |
| AGTATACTATCCTGCAATAA+AGG | - | chr6_4:5040265-5040284 | None:intergenic | 30.0% | |
| AATTCTAAGCATGACGTTAT+AGG | + | chr6_4:5040407-5040426 | Msa0972770:intron | 30.0% | |
| GGAAATTGACATCATTACTT+TGG | + | chr6_4:5040672-5040691 | Msa0972770:CDS | 30.0% | |
| CATTACTTTGGTAGAAAAGA+TGG | + | chr6_4:5040684-5040703 | Msa0972770:CDS | 30.0% | |
| ! | GATCATATTGTTTCCTTTTC+TGG | - | chr6_4:5040726-5040745 | None:intergenic | 30.0% |
| TAGATTTGGCTAACTTTGAA+TGG | + | chr6_4:5040773-5040792 | Msa0972770:CDS | 30.0% | |
| GATTCGAAAAAGAGAAACAT+AGG | + | chr6_4:5040805-5040824 | Msa0972770:CDS | 30.0% | |
| !!! | TTTTTTTCCAGTAGATTGTG+AGG | - | chr6_4:5040897-5040916 | None:intergenic | 30.0% |
| CACAATCTACTGGAAAAAAA+TGG | + | chr6_4:5040897-5040916 | Msa0972770:CDS | 30.0% | |
| ATCTAGTCACTACAAACAAT+TGG | + | chr6_4:5041071-5041090 | Msa0972770:CDS | 30.0% | |
| TAATGTTACTAGAGAGAATG+TGG | + | chr6_4:5041134-5041153 | Msa0972770:CDS | 30.0% | |
| ! | TAACTCTAGATTCTTGCTTT+TGG | + | chr6_4:5041166-5041185 | Msa0972770:CDS | 30.0% |
| !! | AACTCTAGATTCTTGCTTTT+GGG | + | chr6_4:5041167-5041186 | Msa0972770:CDS | 30.0% |
| ! | AAAATCTAGTGCCATTGAAA+GGG | + | chr6_4:5041236-5041255 | Msa0972770:CDS | 30.0% |
| TATAATGTGCAATATGTTGG+AGG | + | chr6_4:5041444-5041463 | Msa0972770:CDS | 30.0% | |
| ACATTGATAAACCACAAAGA+TGG | - | chr6_4:5041499-5041518 | None:intergenic | 30.0% | |
| ! | CTGGTCTTCTTCGAAAATTA+TGG | + | chr6_4:5038389-5038408 | Msa0972770:CDS | 35.0% |
| !! | TTGGTAACAATGGACTATCA+TGG | + | chr6_4:5038446-5038465 | Msa0972770:CDS | 35.0% |
| TGAAGATTGACAGAATTCGA+CGG | - | chr6_4:5038526-5038545 | None:intergenic | 35.0% | |
| GGTTTCATCTACTAAACTCA+AGG | + | chr6_4:5038555-5038574 | Msa0972770:CDS | 35.0% | |
| GCACTTAACTAAACGTTTAG+AGG | - | chr6_4:5038761-5038780 | None:intergenic | 35.0% | |
| GTTTAAGTAGTTAGTACGGT+TGG | + | chr6_4:5038787-5038806 | Msa0972770:intron | 35.0% | |
| GGAATTCTAATTAGGAGGTT+CGG | + | chr6_4:5038829-5038848 | Msa0972770:intron | 35.0% | |
| !! | TCCCCTAAGTTGATAATTAC+TGG | + | chr6_4:5039249-5039268 | Msa0972770:CDS | 35.0% |
| ! | ATAATTACTGGACTTGCTCT+TGG | + | chr6_4:5039261-5039280 | Msa0972770:CDS | 35.0% |
| AGAACTGCTAAAACAGAATC+AGG | - | chr6_4:5039564-5039583 | None:intergenic | 35.0% | |
| TAGAACCAAAATCCTGACTT+TGG | - | chr6_4:5039605-5039624 | None:intergenic | 35.0% | |
| ! | GAATTATTCTGATTCGCTAC+AGG | + | chr6_4:5039701-5039720 | Msa0972770:CDS | 35.0% |
| GTCTCACATTTGATAAGGTA+TGG | + | chr6_4:5039834-5039853 | Msa0972770:intron | 35.0% | |
| ! | GATCAACCCAAATTCTAAGA+TGG | + | chr6_4:5039930-5039949 | Msa0972770:intron | 35.0% |
| !! | CGGTAGTTATTTTCACCTAT+GGG | - | chr6_4:5040153-5040172 | None:intergenic | 35.0% |
| !! | ACGGTAGTTATTTTCACCTA+TGG | - | chr6_4:5040154-5040173 | None:intergenic | 35.0% |
| !! | GACTTTTGATTGTTTTGTGC+AGG | - | chr6_4:5040225-5040244 | None:intergenic | 35.0% |
| ATTGCAGGATAGTATACTAC+TGG | + | chr6_4:5040267-5040286 | Msa0972770:intron | 35.0% | |
| ACTACTGGATAGTATACTAC+TGG | + | chr6_4:5040282-5040301 | Msa0972770:intron | 35.0% | |
| CTACTGGATAGTATACTACT+GGG | + | chr6_4:5040283-5040302 | Msa0972770:intron | 35.0% | |
| CCTTACAAAATCGACTAGTA+TGG | - | chr6_4:5040449-5040468 | None:intergenic | 35.0% | |
| !! | CCATACTAGTCGATTTTGTA+AGG | + | chr6_4:5040446-5040465 | Msa0972770:intron | 35.0% |
| GGAAACAATATGATCCATCA+AGG | + | chr6_4:5040731-5040750 | Msa0972770:CDS | 35.0% | |
| GAAAAAACCTCACAATCTAC+TGG | + | chr6_4:5040887-5040906 | Msa0972770:CDS | 35.0% | |
| TTAATGAAGCCTCAGAAAGA+AGG | + | chr6_4:5040931-5040950 | Msa0972770:CDS | 35.0% | |
| TGGAACAACTTATAGGAGAA+TGG | + | chr6_4:5040984-5041003 | Msa0972770:CDS | 35.0% | |
| ATAGCTCAATACTATCTCCA+TGG | + | chr6_4:5041021-5041040 | Msa0972770:CDS | 35.0% | |
| TAGTCACTACAAACAATTGG+AGG | + | chr6_4:5041074-5041093 | Msa0972770:CDS | 35.0% | |
| ACTACAAACAATTGGAGGAT+TGG | + | chr6_4:5041079-5041098 | Msa0972770:CDS | 35.0% | |
| TTATTTGAACCAGTTGTTGC+TGG | - | chr6_4:5041117-5041136 | None:intergenic | 35.0% | |
| ! | CAAAATCTAGTGCCATTGAA+AGG | + | chr6_4:5041235-5041254 | Msa0972770:CDS | 35.0% |
| ! | TTATGTGTATGGATTGCTCA+AGG | + | chr6_4:5041293-5041312 | Msa0972770:CDS | 35.0% |
| CTTTCACTAAGGAAAATCTC+TGG | - | chr6_4:5041333-5041352 | None:intergenic | 35.0% | |
| AAGAATTGTCACCATCTTTG+TGG | + | chr6_4:5041485-5041504 | Msa0972770:exon | 35.0% | |
| GAAATTTCTATCACCTTAGG+TGG | + | chr6_4:5041528-5041547 | Msa0972770:three_prime_UTR | 35.0% | |
| AGTTACAAAAGTTCCACCTA+AGG | - | chr6_4:5041544-5041563 | None:intergenic | 35.0% | |
| GCAACATTTGTGACAAGTTC+TGG | + | chr6_4:5038370-5038389 | Msa0972770:CDS | 40.0% | |
| GCTTGATCAATTGAAGTCTG+AGG | + | chr6_4:5038678-5038697 | Msa0972770:CDS | 40.0% | |
| ACATGTGTAAGAGTTCAGTC+AGG | + | chr6_4:5038958-5038977 | Msa0972770:intron | 40.0% | |
| AAGACCTCAAACTCGAATCA+TGG | - | chr6_4:5039017-5039036 | None:intergenic | 40.0% | |
| AAACCTCTTTGCATCACCTT+TGG | + | chr6_4:5039345-5039364 | Msa0972770:CDS | 40.0% | |
| AATCCTTTGTCACCAACTAG+TGG | - | chr6_4:5039375-5039394 | None:intergenic | 40.0% | |
| CCATGAAGAACTGTGTGATA+TGG | - | chr6_4:5039406-5039425 | None:intergenic | 40.0% | |
| CCATATCACACAGTTCTTCA+TGG | + | chr6_4:5039403-5039422 | Msa0972770:CDS | 40.0% | |
| TGATCTGTGATGAACTTCCT+TGG | - | chr6_4:5039471-5039490 | None:intergenic | 40.0% | |
| ! | ACTAGTTCTTATGTGCCCTT+CGG | + | chr6_4:5039492-5039511 | Msa0972770:CDS | 40.0% |
| ATCAATCCATGACCAAAGTC+AGG | + | chr6_4:5039590-5039609 | Msa0972770:CDS | 40.0% | |
| CAAAATCCTGACTTTGGTCA+TGG | - | chr6_4:5039599-5039618 | None:intergenic | 40.0% | |
| ! | CATGACCAAAGTCAGGATTT+TGG | + | chr6_4:5039597-5039616 | Msa0972770:CDS | 40.0% |
| !! | ATGTATCGGCTTGCAATTGT+CGG | + | chr6_4:5039725-5039744 | Msa0972770:CDS | 40.0% |
| TGTTAAGCTACCTGCATATG+TGG | - | chr6_4:5039765-5039784 | None:intergenic | 40.0% | |
| ACGTGCATGTTAATAAGTGG+AGG | + | chr6_4:5039864-5039883 | Msa0972770:intron | 40.0% | |
| TACAACGTGCCGTATATATG+CGG | + | chr6_4:5040123-5040142 | Msa0972770:intron | 40.0% | |
| ATGGGTGTACCGCATATATA+CGG | - | chr6_4:5040135-5040154 | None:intergenic | 40.0% | |
| TATATATGCGGTACACCCAT+AGG | + | chr6_4:5040135-5040154 | Msa0972770:intron | 40.0% | |
| !!! | TCTTGCTTTTGGTGTTAGGT+GGG | - | chr6_4:5040191-5040210 | None:intergenic | 40.0% |
| !!! | TTCCTCTTGCTTTTGGTGTT+AGG | - | chr6_4:5040195-5040214 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGAGGCCCAGCT+CGG | + | chr6_4:5040312-5040331 | Msa0972770:intron | 40.0% |
| AAGCATGACGTTATAGGTAG+TGG | + | chr6_4:5040413-5040432 | Msa0972770:intron | 40.0% | |
| !! | TTTTTAGCAGCAGCAACAAC+AGG | + | chr6_4:5040651-5040670 | Msa0972770:intron | 40.0% |
| TCTACGGTGGAACAACTTAT+AGG | + | chr6_4:5040977-5040996 | Msa0972770:CDS | 40.0% | |
| TCACATAGTCTTTACCACCA+TGG | - | chr6_4:5041041-5041060 | None:intergenic | 40.0% | |
| GGATGAGGCAACAAGAAAAT+TGG | + | chr6_4:5041257-5041276 | Msa0972770:CDS | 40.0% | |
| ! | CCATGTAGCTACTTTCACTA+AGG | - | chr6_4:5041344-5041363 | None:intergenic | 40.0% |
| CCTTAGTGAAAGTAGCTACA+TGG | + | chr6_4:5041341-5041360 | Msa0972770:CDS | 40.0% | |
| ATTGACAGAATTCGACGGTG+CGG | - | chr6_4:5038521-5038540 | None:intergenic | 45.0% | |
| TGTGTAAGAGTTCAGTCAGG+AGG | + | chr6_4:5038961-5038980 | Msa0972770:intron | 45.0% | |
| ! | ATTACTGGACTTGCTCTTGG+AGG | + | chr6_4:5039264-5039283 | Msa0972770:CDS | 45.0% |
| GAACCAAAGGTGATGCAAAG+AGG | - | chr6_4:5039351-5039370 | None:intergenic | 45.0% | |
| !! | ACCTTTGGTTCTCCACTAGT+TGG | + | chr6_4:5039360-5039379 | Msa0972770:CDS | 45.0% |
| ACCAACTAGTGGAGAACCAA+AGG | - | chr6_4:5039364-5039383 | None:intergenic | 45.0% | |
| !! | TCTCCACTAGTTGGTGACAA+AGG | + | chr6_4:5039369-5039388 | Msa0972770:CDS | 45.0% |
| CTTGCAATGATCCACTTCCA+AGG | + | chr6_4:5039451-5039470 | Msa0972770:CDS | 45.0% | |
| GTGATGAACTTCCTTGGAAG+TGG | - | chr6_4:5039465-5039484 | None:intergenic | 45.0% | |
| CACACGAGAAATGTTCCGAA+GGG | - | chr6_4:5039510-5039529 | None:intergenic | 45.0% | |
| ACACACGAGAAATGTTCCGA+AGG | - | chr6_4:5039511-5039530 | None:intergenic | 45.0% | |
| CCTTGCAAATTGCTTTGCGA+TGG | - | chr6_4:5039656-5039675 | None:intergenic | 45.0% | |
| CCATCGCAAAGCAATTTGCA+AGG | + | chr6_4:5039653-5039672 | Msa0972770:CDS | 45.0% | |
| ! | CATGGCTTGAACCTGATTTG+CGG | - | chr6_4:5039682-5039701 | None:intergenic | 45.0% |
| GATTCGCTACAGGCATGTAT+CGG | + | chr6_4:5039711-5039730 | Msa0972770:CDS | 45.0% | |
| AGGATTGTCACCACATATGC+AGG | + | chr6_4:5039752-5039771 | Msa0972770:CDS | 45.0% | |
| GTAGGTGGCCTAATAAACCT+TGG | - | chr6_4:5039969-5039988 | None:intergenic | 45.0% | |
| GGTTTATTAGGCCACCTACT+AGG | + | chr6_4:5039970-5039989 | Msa0972770:intron | 45.0% | |
| GTGGGGATTCCTCATGTATA+CGG | - | chr6_4:5040173-5040192 | None:intergenic | 45.0% | |
| !!! | CTTGCTTTTGGTGTTAGGTG+GGG | - | chr6_4:5040190-5040209 | None:intergenic | 45.0% |
| !!! | CTCTTGCTTTTGGTGTTAGG+TGG | - | chr6_4:5040192-5040211 | None:intergenic | 45.0% |
| CACCTAACACCAAAAGCAAG+AGG | + | chr6_4:5040190-5040209 | Msa0972770:intron | 45.0% | |
| GTTTGCACTCCCTTTATTGC+AGG | + | chr6_4:5040252-5040271 | Msa0972770:intron | 45.0% | |
| GCTCAATACTATCTCCATGG+TGG | + | chr6_4:5041024-5041043 | Msa0972770:CDS | 45.0% | |
| ! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6_4:5041182-5041201 | Msa0972770:CDS | 45.0% |
| ! | TAGTGCCATTGAAAGGGATG+AGG | + | chr6_4:5041242-5041261 | Msa0972770:CDS | 45.0% |
| TGTTGCCTCATCCCTTTCAA+TGG | - | chr6_4:5041250-5041269 | None:intergenic | 45.0% | |
| GTGAAAGTAGCTACATGGCA+TGG | + | chr6_4:5041346-5041365 | Msa0972770:CDS | 45.0% | |
| AAAGTAGCTACATGGCATGG+TGG | + | chr6_4:5041349-5041368 | Msa0972770:CDS | 45.0% | |
| ! | TCGGCCATGATTCGAGTTTG+AGG | + | chr6_4:5039010-5039029 | Msa0972770:intron | 50.0% |
| ! | AGCTAGTGAATGGACTCGAG+TGG | - | chr6_4:5039073-5039092 | None:intergenic | 50.0% |
| TTGCAAGGACACCGCAAATC+AGG | + | chr6_4:5039668-5039687 | Msa0972770:CDS | 50.0% | |
| CTACTAGGTCACCGCTATCA+GGG | + | chr6_4:5039985-5040004 | Msa0972770:intron | 50.0% | |
| !! | TCGGCTCTGGGAATGAAAAG+AGG | + | chr6_4:5040030-5040049 | Msa0972770:intron | 50.0% |
| !! | CGATTTGGGTTGCGATGTCA+TGG | - | chr6_4:5040481-5040500 | None:intergenic | 50.0% |
| AAGGCCAACCACTGCGATTT+GGG | - | chr6_4:5040495-5040514 | None:intergenic | 50.0% | |
| AAAGGCCAACCACTGCGATT+TGG | - | chr6_4:5040496-5040515 | None:intergenic | 50.0% | |
| TGGACCAAGACGCAGTTCTA+TGG | + | chr6_4:5040863-5040882 | Msa0972770:CDS | 50.0% | |
| TTCGCCATAGAACTGCGTCT+TGG | - | chr6_4:5040870-5040889 | None:intergenic | 50.0% | |
| !! | CTTCGTACTCGTTGGCTCTA+CGG | + | chr6_4:5040961-5040980 | Msa0972770:CDS | 50.0% |
| !! | GTAGAAGCACCAGCAACAAC+TGG | + | chr6_4:5041105-5041124 | Msa0972770:CDS | 50.0% |
| GGTGAGCTGAGTGACGTTGA+AGG | + | chr6_4:5038808-5038827 | Msa0972770:intron | 55.0% | |
| GGCTTGCAATTGTCGGCACT+AGG | + | chr6_4:5039732-5039751 | Msa0972770:CDS | 55.0% | |
| ! | GATAGCGGTGACCTAGTAGG+TGG | - | chr6_4:5039984-5040003 | None:intergenic | 55.0% |
| !! | CCTGATAGCGGTGACCTAGT+AGG | - | chr6_4:5039987-5040006 | None:intergenic | 55.0% |
| CCTACTAGGTCACCGCTATC+AGG | + | chr6_4:5039984-5040003 | Msa0972770:intron | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | - | chr6_4:5040011-5040030 | None:intergenic | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | + | chr6_4:5040011-5040030 | Msa0972770:intron | 55.0% | |
| GCAAACAGCTCAACCGAGCT+GGG | - | chr6_4:5040328-5040347 | None:intergenic | 55.0% | |
| TGCAAACAGCTCAACCGAGC+TGG | - | chr6_4:5040329-5040348 | None:intergenic | 55.0% | |
| TGATCCGTGTGGCCCAATAG+CGG | - | chr6_4:5040373-5040392 | None:intergenic | 55.0% | |
| CAGCTAGAGTGTGATCCGTG+TGG | - | chr6_4:5040384-5040403 | None:intergenic | 55.0% | |
| CATCGCAACCCAAATCGCAG+TGG | + | chr6_4:5040484-5040503 | Msa0972770:intron | 55.0% | |
| GCAACCCAAATCGCAGTGGT+TGG | + | chr6_4:5040488-5040507 | Msa0972770:intron | 55.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | + | chr6_4:5040003-5040022 | Msa0972770:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | - | chr6_4:5040015-5040034 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | - | chr6_4:5040016-5040035 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+TGG | + | chr6_4:5040017-5040036 | Msa0972770:intron | 60.0% | |
| GAATTCGGAGGCTCGGCTCT+GGG | + | chr6_4:5040018-5040037 | Msa0972770:intron | 60.0% | |
| GAGCTGTTTGCACCCCCTCA+AGG | + | chr6_4:5040337-5040356 | Msa0972770:intron | 60.0% | |
| TGTTTGCACCCCCTCAAGGC+CGG | + | chr6_4:5040341-5040360 | Msa0972770:intron | 60.0% | |
| GTGTGGCCCAATAGCGGTCA+GGG | - | chr6_4:5040367-5040386 | None:intergenic | 60.0% | |
| CTGACCGCTATTGGGCCACA+CGG | + | chr6_4:5040366-5040385 | Msa0972770:intron | 60.0% | |
| AGCGACGCGCCTTCTTTCTG+AGG | - | chr6_4:5040943-5040962 | None:intergenic | 60.0% | |
| !! | CGTACTCGTTGGCTCTACGG+TGG | + | chr6_4:5040964-5040983 | Msa0972770:CDS | 60.0% |
| CTCAGGGACGGCCCTGATAG+CGG | - | chr6_4:5039999-5040018 | None:intergenic | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | + | chr6_4:5040006-5040025 | Msa0972770:intron | 65.0% | |
| CGTGTGGCCCAATAGCGGTC+AGG | - | chr6_4:5040368-5040387 | None:intergenic | 65.0% | |
| GCGCGTCGCTTCGTACTCGT+TGG | + | chr6_4:5040953-5040972 | Msa0972770:CDS | 65.0% | |
| AGGCCGGCCCTGACCGCTAT+TGG | + | chr6_4:5040357-5040376 | Msa0972770:intron | 70.0% | |
| GGCCGGCCCTGACCGCTATT+GGG | + | chr6_4:5040358-5040377 | Msa0972770:intron | 70.0% | |
| GGCCCAATAGCGGTCAGGGC+CGG | - | chr6_4:5040363-5040382 | None:intergenic | 70.0% | |
| GGTCAGGGCCGGCCTTGAGG+GGG | - | chr6_4:5040352-5040371 | None:intergenic | 75.0% | |
| CGGTCAGGGCCGGCCTTGAG+GGG | - | chr6_4:5040353-5040372 | None:intergenic | 75.0% | |
| GCGGTCAGGGCCGGCCTTGA+GGG | - | chr6_4:5040354-5040373 | None:intergenic | 75.0% | |
| AGCGGTCAGGGCCGGCCTTG+AGG | - | chr6_4:5040355-5040374 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5038349 | 5041652 | 5038349 | ID=Msa0972770;Name=Msa0972770 |
| chr6_4 | mRNA | 5038349 | 5041652 | 5038349 | ID=Msa0972770-mRNA-1;Parent=Msa0972770;Name=Msa0972770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.66|1|1|0.66|3|167|569 |
| chr6_4 | exon | 5038349 | 5038699 | 5038349 | ID=Msa0972770-mRNA-1:exon:2151;Parent=Msa0972770-mRNA-1 |
| chr6_4 | exon | 5039240 | 5039773 | 5039240 | ID=Msa0972770-mRNA-1:exon:2152;Parent=Msa0972770-mRNA-1 |
| chr6_4 | exon | 5040661 | 5041652 | 5040661 | ID=Msa0972770-mRNA-1:exon:2153;Parent=Msa0972770-mRNA-1 |
| chr6_4 | CDS | 5038349 | 5038699 | 5038349 | ID=Msa0972770-mRNA-1:cds;Parent=Msa0972770-mRNA-1 |
| chr6_4 | CDS | 5039240 | 5039773 | 5039240 | ID=Msa0972770-mRNA-1:cds;Parent=Msa0972770-mRNA-1 |
| chr6_4 | CDS | 5040661 | 5041485 | 5040661 | ID=Msa0972770-mRNA-1:cds;Parent=Msa0972770-mRNA-1 |
| chr6_4 | three_prime_UTR | 5041486 | 5041652 | 5041486 | ID=Msa0972770-mRNA-1:three_prime_utr;Parent=Msa0972770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
