Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233560 | XP_003593464.1 | 94.237 | 295 | 7 | 1 | 1 | 285 | 8 | 302 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233560 | sp|Q9SXA6|ENDO1_ARATH | 68.198 | 283 | 74 | 2 | 19 | 285 | 23 | 305 | 3.44e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233560 | G7ILF4 | 94.237 | 295 | 7 | 1 | 1 | 285 | 8 | 302 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191460 | Msa0233560 | 0.984220 | 6.260529e-160 | -8.615850e-47 |
| Msa0191560 | Msa0233560 | 0.982928 | 2.258428e-156 | -8.615850e-47 |
| Msa0233560 | Msa0263920 | 0.820883 | 5.421189e-53 | -8.615850e-47 |
| Msa0233560 | Msa0312220 | 0.877416 | 6.397752e-69 | -8.615850e-47 |
| Msa0233560 | Msa0606080 | 0.809917 | 1.493133e-50 | -8.615850e-47 |
| Msa0233560 | Msa1072520 | 0.848555 | 5.689472e-60 | -8.615850e-47 |
| Msa0233560 | Msa1117910 | 0.858469 | 8.066765e-63 | -8.615850e-47 |
| Msa0233560 | Msa1338370 | 0.824101 | 9.686734e-54 | -8.615850e-47 |
| Msa0233560 | Msa1396020 | 0.840214 | 9.948018e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233560 | MtrunA17_Chr2g0281321 | 94.697 | 264 | 4 | 1 | 32 | 285 | 1 | 264 | 0.0 | 522 |
| Msa0233560 | MtrunA17_Chr4g0048061 | 50.000 | 272 | 118 | 4 | 20 | 274 | 59 | 329 | 5.79e-97 | 288 |
| Msa0233560 | MtrunA17_Chr1g0209691 | 43.816 | 283 | 137 | 5 | 8 | 274 | 7 | 283 | 4.71e-84 | 253 |
| Msa0233560 | MtrunA17_Chr5g0423341 | 44.366 | 284 | 135 | 6 | 9 | 274 | 8 | 286 | 4.75e-82 | 249 |
| Msa0233560 | MtrunA17_Chr5g0423351 | 43.158 | 285 | 141 | 5 | 9 | 276 | 8 | 288 | 3.36e-78 | 239 |
| Msa0233560 | MtrunA17_Chr1g0170511 | 47.059 | 136 | 56 | 2 | 19 | 138 | 21 | 156 | 1.02e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233560 | AT1G11190.1 | 68.198 | 283 | 74 | 2 | 19 | 285 | 23 | 305 | 3.50e-143 | 405 |
| Msa0233560 | AT1G68290.1 | 47.917 | 288 | 128 | 6 | 6 | 275 | 7 | 290 | 2.08e-95 | 283 |
| Msa0233560 | AT4G21585.4 | 48.364 | 275 | 124 | 4 | 18 | 275 | 18 | 291 | 4.08e-94 | 280 |
| Msa0233560 | AT4G21585.1 | 48.364 | 275 | 124 | 4 | 18 | 275 | 18 | 291 | 4.08e-94 | 280 |
| Msa0233560 | AT4G21585.3 | 44.186 | 301 | 124 | 4 | 18 | 275 | 18 | 317 | 6.56e-90 | 270 |
| Msa0233560 | AT4G21585.6 | 43.894 | 303 | 124 | 5 | 18 | 275 | 18 | 319 | 9.32e-88 | 265 |
| Msa0233560 | AT4G21590.1 | 47.584 | 269 | 128 | 4 | 18 | 274 | 18 | 285 | 1.15e-85 | 258 |
| Msa0233560 | AT4G21590.2 | 47.584 | 269 | 128 | 4 | 18 | 274 | 18 | 285 | 1.15e-85 | 258 |
| Msa0233560 | AT4G21600.1 | 45.091 | 275 | 132 | 5 | 18 | 274 | 14 | 287 | 3.98e-81 | 247 |
| Msa0233560 | AT4G21585.2 | 42.041 | 245 | 98 | 4 | 18 | 219 | 18 | 261 | 1.56e-65 | 206 |
| Msa0233560 | AT4G21585.5 | 42.041 | 245 | 98 | 4 | 18 | 219 | 18 | 261 | 1.56e-65 | 206 |
Find 68 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTCTTGTCACACTTTA+TGG | 0.191189 | 2_2:+5903840 | Msa0233560:CDS |
| GTGTATGGCCTGATCAAATT+AGG | 0.272622 | 2_2:+5903396 | Msa0233560:CDS |
| TGTCAATGACCATTGATCAT+AGG | 0.323275 | 2_2:+5905253 | Msa0233560:three_prime_UTR |
| GTCAGATGATGTTGCTTCTT+GGG | 0.326798 | 2_2:+5904360 | Msa0233560:CDS |
| GGTCAGATGATGTTGCTTCT+TGG | 0.337853 | 2_2:+5904359 | Msa0233560:CDS |
| TTATGAATTTGACAAACTTT+TGG | 0.342788 | 2_2:+5905456 | Msa0233560:three_prime_UTR |
| TTTCTTGGATGCAGGGAATC+TGG | 0.348070 | 2_2:+5904338 | Msa0233560:intron |
| GGTAACAAAATTAAACATAT+AGG | 0.349460 | 2_2:+5902589 | None:intergenic |
| TTGTTCTTGTCACACTTTAT+GGG | 0.352767 | 2_2:+5903841 | Msa0233560:CDS |
| AAATCTGGAATGACTCTATC+AGG | 0.358466 | 2_2:+5904583 | Msa0233560:CDS |
| ATCATAGTACCTGGTGTCAT+TGG | 0.368732 | 2_2:+5902701 | Msa0233560:CDS |
| TTGATCAACCAACCAACATT+TGG | 0.385338 | 2_2:-5905334 | None:intergenic |
| CATTAACAATTAAGAAGAAA+TGG | 0.399046 | 2_2:-5905284 | None:intergenic |
| GTAACAAAATTAAACATATA+GGG | 0.399584 | 2_2:+5902590 | None:intergenic |
| ATGATTCTGAACCAAGTGTT+TGG | 0.402598 | 2_2:+5905152 | Msa0233560:CDS |
| ACTTATCAGCACTTTGTGTA+TGG | 0.406470 | 2_2:+5903381 | Msa0233560:CDS |
| GGCACTGGTATAAATATAGA+TGG | 0.408551 | 2_2:+5903417 | Msa0233560:CDS |
| GGCGAGATTGAAAGGTTTGA+TGG | 0.414794 | 2_2:+5902634 | Msa0233560:exon |
| TACCAGTGCCTAATTTGATC+AGG | 0.417409 | 2_2:-5903404 | None:intergenic |
| GCATACAAATAGCTTGCAAA+TGG | 0.430035 | 2_2:+5904545 | Msa0233560:CDS |
| GGTTATGAAGGAGTTAAATC+TGG | 0.439936 | 2_2:+5904568 | Msa0233560:CDS |
| TATTTACACATATGTTGAGT+TGG | 0.440214 | 2_2:-5905415 | None:intergenic |
| CATACAAATAGCTTGCAAAT+GGG | 0.452050 | 2_2:+5904546 | Msa0233560:CDS |
| GTCAATGACCATTGATCATA+GGG | 0.456849 | 2_2:+5905254 | Msa0233560:three_prime_UTR |
| CTTCAGAGTCTCCAAACACT+TGG | 0.462625 | 2_2:-5905163 | None:intergenic |
| TTGATGGTGTCTCTTCCACT+TGG | 0.484743 | 2_2:+5902650 | Msa0233560:exon |
| AAACACTTGGTTCAGAATCA+TGG | 0.494857 | 2_2:-5905150 | None:intergenic |
| TGAACTGCTTCTGATGCCTC+AGG | 0.499507 | 2_2:-5903329 | None:intergenic |
| CAGAAGAATACTTTGACTCA+AGG | 0.500412 | 2_2:+5905081 | Msa0233560:intron |
| CAACTTTCTCATTACAAAGA+GGG | 0.507826 | 2_2:+5903660 | Msa0233560:CDS |
| TTGTTACCTCCCTATGTCAA+TGG | 0.511346 | 2_2:+5903356 | Msa0233560:CDS |
| TGCTTCTTGGGAACATTGCA+AGG | 0.512844 | 2_2:+5904372 | Msa0233560:CDS |
| GTGTTTGGAGACTCTGAAGA+AGG | 0.514236 | 2_2:+5905167 | Msa0233560:CDS |
| GCTTGCAAATGGGGTTATGA+AGG | 0.514371 | 2_2:+5904556 | Msa0233560:CDS |
| TCAACCAACCAACATTTGGT+TGG | 0.522893 | 2_2:-5905330 | None:intergenic |
| GAGTTAGACCCTATGATCAA+TGG | 0.527641 | 2_2:-5905262 | None:intergenic |
| TTAGATACGGCGAGATTGAA+AGG | 0.537094 | 2_2:+5902626 | Msa0233560:five_prime_UTR |
| GTCATTGGATGGAGCAAAGA+GGG | 0.537487 | 2_2:+5902716 | Msa0233560:CDS |
| TAGTACCTGGTGTCATTGGA+TGG | 0.539152 | 2_2:+5902705 | Msa0233560:CDS |
| CAATTGATCTACGCTGGTAT+CGG | 0.540639 | 2_2:+5903999 | Msa0233560:CDS |
| GCAATTCGCTTCATGACATA+CGG | 0.542919 | 2_2:-5905107 | None:intergenic |
| CTCACCAACCAAATGTTGGT+TGG | 0.545619 | 2_2:+5905326 | Msa0233560:three_prime_UTR |
| TGATAAGTTACCATTGACAT+AGG | 0.548572 | 2_2:-5903366 | None:intergenic |
| AATGTTGGTTGGTTGATCAA+AGG | 0.563416 | 2_2:+5905337 | Msa0233560:three_prime_UTR |
| TCAACTTTCTCATTACAAAG+AGG | 0.566465 | 2_2:+5903659 | Msa0233560:CDS |
| GGCCTGATCAAATTAGGCAC+TGG | 0.569289 | 2_2:+5903402 | Msa0233560:CDS |
| TCTACTTTCATCATAGTACC+TGG | 0.569857 | 2_2:+5902692 | Msa0233560:CDS |
| GAGGTGAATCCAACGTGCAT+CGG | 0.577676 | 2_2:-5903959 | None:intergenic |
| GATAAGTTACCATTGACATA+GGG | 0.581479 | 2_2:-5903365 | None:intergenic |
| GTTGGATTCACCTCAGACAA+AGG | 0.581712 | 2_2:+5903968 | Msa0233560:CDS |
| TGTGTTTCCACCTTTGTCTG+AGG | 0.582088 | 2_2:-5903978 | None:intergenic |
| GATGACATGTCTAATTGCAC+AGG | 0.594566 | 2_2:+5902745 | Msa0233560:CDS |
| ATACAAATAGCTTGCAAATG+GGG | 0.599056 | 2_2:+5904547 | Msa0233560:CDS |
| CTTTATGGGAGATATTCACC+AGG | 0.613075 | 2_2:+5903855 | Msa0233560:CDS |
| GAAACACAATTGATCTACGC+TGG | 0.614736 | 2_2:+5903993 | Msa0233560:CDS |
| GTCATGAAGCGAATTGCTCA+AGG | 0.617583 | 2_2:+5905113 | Msa0233560:CDS |
| TGACAAGAACAATAATGCCT+CGG | 0.623745 | 2_2:-5903830 | None:intergenic |
| GTTGCTCACCAACCAAATGT+TGG | 0.626369 | 2_2:+5905322 | Msa0233560:three_prime_UTR |
| AAGTTACCATTGACATAGGG+AGG | 0.630506 | 2_2:-5903362 | None:intergenic |
| GGTGTGTCAATGAAATGAAG+TGG | 0.644809 | 2_2:-5903446 | None:intergenic |
| TTGCTCCATCCAATGACACC+AGG | 0.646308 | 2_2:-5902710 | None:intergenic |
| AAGAACAACACAAATCCAAG+TGG | 0.649453 | 2_2:-5902665 | None:intergenic |
| TGTCATTGGATGGAGCAAAG+AGG | 0.656727 | 2_2:+5902715 | Msa0233560:CDS |
| ACAAAATTAAACATATAGGG+TGG | 0.671696 | 2_2:+5902593 | None:intergenic |
| GGATTCACCTCAGACAAAGG+TGG | 0.681668 | 2_2:+5903971 | Msa0233560:CDS |
| ATGAAGCGAATTGCTCAAGG+TGG | 0.685248 | 2_2:+5905116 | Msa0233560:CDS |
| ATATTTCAGCCGATGCACGT+TGG | 0.693369 | 2_2:+5903950 | Msa0233560:intron |
| TATTGCAGATAATATGACCG+AGG | 0.722861 | 2_2:+5903813 | Msa0233560:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATGTTGATTTTATT+TGG | - | chr2_2:5904320-5904339 | None:intergenic | 10.0% |
| !! | TATTATTGGAATCATAATTA+TGG | + | chr2_2:5903261-5903280 | Msa0233560:intron | 15.0% |
| !!! | ATTTGTATATGTAGTTATTT+TGG | + | chr2_2:5903507-5903526 | Msa0233560:intron | 15.0% |
| !! | TAAGTATAAAAATTTCTGAA+AGG | - | chr2_2:5903734-5903753 | None:intergenic | 15.0% |
| !! | TTTATCAAATTAATCTTATC+TGG | - | chr2_2:5903921-5903940 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGTTACTTACAT+TGG | - | chr2_2:5904244-5904263 | None:intergenic | 15.0% |
| !!! | AAAATCAACATATTATTTCT+TGG | + | chr2_2:5904323-5904342 | Msa0233560:intron | 15.0% |
| !! | TCTAAACATTAATTAACATT+AGG | - | chr2_2:5904470-5904489 | None:intergenic | 15.0% |
| !! | AATGTTTAGATTTCTTATAT+TGG | + | chr2_2:5904480-5904499 | Msa0233560:intron | 15.0% |
| !! | TTATTTATTTATTTGTCATC+TGG | - | chr2_2:5904752-5904771 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATCATGG+AGG | - | chr2_2:5905006-5905025 | None:intergenic | 15.0% |
| !! | GCTAAAAAAAAAAAAAATCA+TGG | - | chr2_2:5905009-5905028 | None:intergenic | 15.0% |
| !!! | AATTTAAAGAACTAATTTTC+TGG | - | chr2_2:5905233-5905252 | None:intergenic | 15.0% |
| !! | TGGTTGAAAAATATTAGATA+CGG | + | chr2_2:5902613-5902632 | Msa0233560:five_prime_UTR | 20.0% |
| !! | AAAATGATATTTAGTGTGTT+TGG | + | chr2_2:5902822-5902841 | Msa0233560:intron | 20.0% |
| !! | AAGTCAAACATAACTATTTA+TGG | + | chr2_2:5903063-5903082 | Msa0233560:intron | 20.0% |
| !! | TATTTCTTAGAATTGTCTTT+CGG | - | chr2_2:5903108-5903127 | None:intergenic | 20.0% |
| !! | ACATTACTTATGTATATGTT+TGG | - | chr2_2:5903141-5903160 | None:intergenic | 20.0% |
| !! | TACTTCATGATATTAATTAC+TGG | + | chr2_2:5903757-5903776 | Msa0233560:intron | 20.0% |
| !! | GTCAAGAAAATAATATTAAC+CGG | + | chr2_2:5903787-5903806 | Msa0233560:intron | 20.0% |
| !! | AAACATTAATTAACATTAGG+AGG | - | chr2_2:5904467-5904486 | None:intergenic | 20.0% |
| !!! | TTTCTAAAACATTGCTTTAA+AGG | + | chr2_2:5904923-5904942 | Msa0233560:intron | 20.0% |
| !! | CATTAACAATTAAGAAGAAA+TGG | - | chr2_2:5905287-5905306 | None:intergenic | 20.0% |
| !!! | TTATGAATTTGACAAACTTT+TGG | + | chr2_2:5905456-5905475 | Msa0233560:three_prime_UTR | 20.0% |
| ! | TTAGTATTGCGTTTGTAAAA+CGG | - | chr2_2:5902971-5902990 | None:intergenic | 25.0% |
| ! | CTGGTTATGAATAAGTATAA+GGG | + | chr2_2:5903178-5903197 | Msa0233560:intron | 25.0% |
| ! | AAATCACTATTACTCTTGAA+GGG | + | chr2_2:5903208-5903227 | Msa0233560:intron | 25.0% |
| !!! | GGGTAATTTTTTTTTGAACA+AGG | + | chr2_2:5903228-5903247 | Msa0233560:intron | 25.0% |
| ! | TAAAAATCTTTAGACAAACC+TGG | - | chr2_2:5903876-5903895 | None:intergenic | 25.0% |
| ! | ATCAAATTAATCTTATCTGG+TGG | - | chr2_2:5903918-5903937 | None:intergenic | 25.0% |
| !! | AAGAATCTAAAATTCGCTTA+AGG | - | chr2_2:5904092-5904111 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTATGCTCATA+AGG | + | chr2_2:5904128-5904147 | Msa0233560:intron | 25.0% |
| !! | TATAGTTTTTCTCAATGTCT+TGG | - | chr2_2:5904221-5904240 | None:intergenic | 25.0% |
| !! | TTTTGAACTAATCATGTAGT+TGG | + | chr2_2:5904512-5904531 | Msa0233560:intron | 25.0% |
| ! | TTTGAACTAATCATGTAGTT+GGG | + | chr2_2:5904513-5904532 | Msa0233560:intron | 25.0% |
| ! | TCAATAAGTGGTTGAATTTA+TGG | - | chr2_2:5904625-5904644 | None:intergenic | 25.0% |
| ! | AAATTCAACCACTTATTGAT+AGG | + | chr2_2:5904626-5904645 | Msa0233560:intron | 25.0% |
| ! | TGGTTTAATCAATACAACTA+CGG | + | chr2_2:5904721-5904740 | Msa0233560:intron | 25.0% |
| ! | AAAATATATTGAACCAACCA+CGG | + | chr2_2:5904793-5904812 | Msa0233560:intron | 25.0% |
| ! | TATTTACACATATGTTGAGT+TGG | - | chr2_2:5905418-5905437 | None:intergenic | 25.0% |
| !! | TACACACGTAGATTTGATTT+TGG | + | chr2_2:5903016-5903035 | Msa0233560:intron | 30.0% |
| !! | ACACACGTAGATTTGATTTT+GGG | + | chr2_2:5903017-5903036 | Msa0233560:intron | 30.0% |
| GTATCAAATGATTATCATGC+TGG | + | chr2_2:5903159-5903178 | Msa0233560:intron | 30.0% | |
| GCTGGTTATGAATAAGTATA+AGG | + | chr2_2:5903177-5903196 | Msa0233560:intron | 30.0% | |
| CAAATCACTATTACTCTTGA+AGG | + | chr2_2:5903207-5903226 | Msa0233560:intron | 30.0% | |
| !!! | TTTTTTGAACAAGGTCATGA+AGG | + | chr2_2:5903237-5903256 | Msa0233560:intron | 30.0% |
| ! | TTTTTGAACAAGGTCATGAA+GGG | + | chr2_2:5903238-5903257 | Msa0233560:intron | 30.0% |
| GATAAGTTACCATTGACATA+GGG | - | chr2_2:5903368-5903387 | None:intergenic | 30.0% | |
| TGATAAGTTACCATTGACAT+AGG | - | chr2_2:5903369-5903388 | None:intergenic | 30.0% | |
| ! | TGAAATCCACATTTTTCATC+TGG | - | chr2_2:5903470-5903489 | None:intergenic | 30.0% |
| ! | TTGTTGCTGTTAACAAACAT+AGG | + | chr2_2:5903585-5903604 | Msa0233560:intron | 30.0% |
| ! | TGTTGCTGTTAACAAACATA+GGG | + | chr2_2:5903586-5903605 | Msa0233560:intron | 30.0% |
| TCAACTTTCTCATTACAAAG+AGG | + | chr2_2:5903659-5903678 | Msa0233560:CDS | 30.0% | |
| CAACTTTCTCATTACAAAGA+GGG | + | chr2_2:5903660-5903679 | Msa0233560:CDS | 30.0% | |
| ATTGTTCTTGTCACACTTTA+TGG | + | chr2_2:5903840-5903859 | Msa0233560:CDS | 30.0% | |
| TTGTTCTTGTCACACTTTAT+GGG | + | chr2_2:5903841-5903860 | Msa0233560:CDS | 30.0% | |
| AAAATATGTTACTAGCAGAC+TGG | + | chr2_2:5904051-5904070 | Msa0233560:intron | 30.0% | |
| !!! | TGAACACGTGGATTTTTTAT+TGG | + | chr2_2:5904292-5904311 | Msa0233560:intron | 30.0% |
| ! | ACATATTATTTCTTGGATGC+AGG | + | chr2_2:5904330-5904349 | Msa0233560:intron | 30.0% |
| ! | CATATTATTTCTTGGATGCA+GGG | + | chr2_2:5904331-5904350 | Msa0233560:intron | 30.0% |
| GAGATTGATGAAATTGAAAG+TGG | - | chr2_2:5904438-5904457 | None:intergenic | 30.0% | |
| ! | CATACAAATAGCTTGCAAAT+GGG | + | chr2_2:5904546-5904565 | Msa0233560:CDS | 30.0% |
| ! | ATACAAATAGCTTGCAAATG+GGG | + | chr2_2:5904547-5904566 | Msa0233560:CDS | 30.0% |
| !!! | AAAGCAACGTTTTAAAAACC+TGG | + | chr2_2:5904658-5904677 | Msa0233560:intron | 30.0% |
| GGTTTAATCAATACAACTAC+GGG | + | chr2_2:5904722-5904741 | Msa0233560:intron | 30.0% | |
| !! | ACATAGAATGACTAGTTTGT+CGG | - | chr2_2:5904872-5904891 | None:intergenic | 30.0% |
| AAGCAACAAATTTGTGAAAC+AGG | + | chr2_2:5904979-5904998 | Msa0233560:intron | 30.0% | |
| CATCATTCATTCCATGTTAA+AGG | + | chr2_2:5905034-5905053 | Msa0233560:intron | 30.0% | |
| TGCAACAAAATCCTTTAACA+TGG | - | chr2_2:5905048-5905067 | None:intergenic | 30.0% | |
| TGAGCAACAAAAAATCAAAC+AGG | - | chr2_2:5905310-5905329 | None:intergenic | 30.0% | |
| AAGAACAACACAAATCCAAG+TGG | - | chr2_2:5902668-5902687 | None:intergenic | 35.0% | |
| TCTACTTTCATCATAGTACC+TGG | + | chr2_2:5902692-5902711 | Msa0233560:CDS | 35.0% | |
| ! | AAATCATGGCAAAAAAGCAC+CGG | - | chr2_2:5902886-5902905 | None:intergenic | 35.0% |
| GTTAGCTAGAAGCTAGTATT+TGG | - | chr2_2:5902918-5902937 | None:intergenic | 35.0% | |
| ACGGAGTTTGATGAAAATCA+AGG | - | chr2_2:5902952-5902971 | None:intergenic | 35.0% | |
| !! | CGTAGATTTGATTTTGGGAA+TGG | + | chr2_2:5903022-5903041 | Msa0233560:intron | 35.0% |
| !! | AAGGTCATGAAGGGTATTAT+TGG | + | chr2_2:5903247-5903266 | Msa0233560:intron | 35.0% |
| !!! | ATAGACACTTTTAAAGCCTG+AGG | + | chr2_2:5903313-5903332 | Msa0233560:intron | 35.0% |
| ACTTATCAGCACTTTGTGTA+TGG | + | chr2_2:5903381-5903400 | Msa0233560:CDS | 35.0% | |
| !! | GGCACTGGTATAAATATAGA+TGG | + | chr2_2:5903417-5903436 | Msa0233560:CDS | 35.0% |
| ! | GTTGCTGTTAACAAACATAG+GGG | + | chr2_2:5903587-5903606 | Msa0233560:intron | 35.0% |
| AACATCTGATCGTAGATGTA+AGG | + | chr2_2:5903683-5903702 | Msa0233560:intron | 35.0% | |
| ACATCTGATCGTAGATGTAA+GGG | + | chr2_2:5903684-5903703 | Msa0233560:intron | 35.0% | |
| CATATTATCTGCAATATCGC+CGG | - | chr2_2:5903809-5903828 | None:intergenic | 35.0% | |
| TATTGCAGATAATATGACCG+AGG | + | chr2_2:5903813-5903832 | Msa0233560:intron | 35.0% | |
| TGACAAGAACAATAATGCCT+CGG | - | chr2_2:5903833-5903852 | None:intergenic | 35.0% | |
| TTGTTTATGCTCATAAGGTG+TGG | + | chr2_2:5904133-5904152 | Msa0233560:intron | 35.0% | |
| TGTTTATGCTCATAAGGTGT+GGG | + | chr2_2:5904134-5904153 | Msa0233560:intron | 35.0% | |
| ! | AGTTTTTCTCAATGTCTTGG+AGG | - | chr2_2:5904218-5904237 | None:intergenic | 35.0% |
| CCACGTGTTCATTAAAATCT+AGG | - | chr2_2:5904283-5904302 | None:intergenic | 35.0% | |
| !! | CCTAGATTTTAATGAACACG+TGG | + | chr2_2:5904280-5904299 | Msa0233560:intron | 35.0% |
| ! | GCATACAAATAGCTTGCAAA+TGG | + | chr2_2:5904545-5904564 | Msa0233560:CDS | 35.0% |
| GGTTATGAAGGAGTTAAATC+TGG | + | chr2_2:5904568-5904587 | Msa0233560:CDS | 35.0% | |
| ! | AAATCTGGAATGACTCTATC+AGG | + | chr2_2:5904583-5904602 | Msa0233560:CDS | 35.0% |
| AAGAGAAGCCTATCAATAAG+TGG | - | chr2_2:5904637-5904656 | None:intergenic | 35.0% | |
| AAACCAATTGAGTCATGATC+CGG | - | chr2_2:5904707-5904726 | None:intergenic | 35.0% | |
| !! | TTTGTCGGTTAGTTTGATCT+CGG | - | chr2_2:5904857-5904876 | None:intergenic | 35.0% |
| CTAGTCATTCTATGTTCAAC+CGG | + | chr2_2:5904877-5904896 | Msa0233560:intron | 35.0% | |
| ! | CTATGTTCAACCGGTTTAAT+TGG | + | chr2_2:5904886-5904905 | Msa0233560:intron | 35.0% |
| ACTGAACTAGCCAATTAAAC+CGG | - | chr2_2:5904899-5904918 | None:intergenic | 35.0% | |
| ! | AAAGGATTTTGTTGCATGTG+TGG | + | chr2_2:5905052-5905071 | Msa0233560:intron | 35.0% |
| CAGAAGAATACTTTGACTCA+AGG | + | chr2_2:5905081-5905100 | Msa0233560:intron | 35.0% | |
| AAACACTTGGTTCAGAATCA+TGG | - | chr2_2:5905153-5905172 | None:intergenic | 35.0% | |
| ATGATTCTGAACCAAGTGTT+TGG | + | chr2_2:5905152-5905171 | Msa0233560:CDS | 35.0% | |
| TGTCAATGACCATTGATCAT+AGG | + | chr2_2:5905253-5905272 | Msa0233560:three_prime_UTR | 35.0% | |
| GTCAATGACCATTGATCATA+GGG | + | chr2_2:5905254-5905273 | Msa0233560:three_prime_UTR | 35.0% | |
| TTGATCAACCAACCAACATT+TGG | - | chr2_2:5905337-5905356 | None:intergenic | 35.0% | |
| ! | AATGTTGGTTGGTTGATCAA+AGG | + | chr2_2:5905337-5905356 | Msa0233560:three_prime_UTR | 35.0% |
| TTAGATACGGCGAGATTGAA+AGG | + | chr2_2:5902626-5902645 | Msa0233560:five_prime_UTR | 40.0% | |
| !! | ATCATAGTACCTGGTGTCAT+TGG | + | chr2_2:5902701-5902720 | Msa0233560:CDS | 40.0% |
| GATGACATGTCTAATTGCAC+AGG | + | chr2_2:5902745-5902764 | Msa0233560:CDS | 40.0% | |
| ! | TGCTTTTGTGTGTTGCAAAC+GGG | - | chr2_2:5902851-5902870 | None:intergenic | 40.0% |
| ! | GTGCTTTTGTGTGTTGCAAA+CGG | - | chr2_2:5902852-5902871 | None:intergenic | 40.0% |
| ! | AAAAGCACGTATGCACTTTC+CGG | + | chr2_2:5902864-5902883 | Msa0233560:intron | 40.0% |
| ! | TTTGGAGCTTCTGGAAATCA+TGG | - | chr2_2:5902900-5902919 | None:intergenic | 40.0% |
| ! | AAGCTAGTATTTGGAGCTTC+TGG | - | chr2_2:5902909-5902928 | None:intergenic | 40.0% |
| TTGTTACCTCCCTATGTCAA+TGG | + | chr2_2:5903356-5903375 | Msa0233560:CDS | 40.0% | |
| AAGTTACCATTGACATAGGG+AGG | - | chr2_2:5903365-5903384 | None:intergenic | 40.0% | |
| GTGTATGGCCTGATCAAATT+AGG | + | chr2_2:5903396-5903415 | Msa0233560:CDS | 40.0% | |
| TACCAGTGCCTAATTTGATC+AGG | - | chr2_2:5903407-5903426 | None:intergenic | 40.0% | |
| GGTGTGTCAATGAAATGAAG+TGG | - | chr2_2:5903449-5903468 | None:intergenic | 40.0% | |
| GACACACCAGATGAAAAATG+TGG | + | chr2_2:5903461-5903480 | Msa0233560:CDS | 40.0% | |
| CTTTATGGGAGATATTCACC+AGG | + | chr2_2:5903855-5903874 | Msa0233560:CDS | 40.0% | |
| GAAACACAATTGATCTACGC+TGG | + | chr2_2:5903993-5904012 | Msa0233560:CDS | 40.0% | |
| CAATTGATCTACGCTGGTAT+CGG | + | chr2_2:5903999-5904018 | Msa0233560:CDS | 40.0% | |
| ! | TTTTCTCAATGTCTTGGAGG+AGG | - | chr2_2:5904215-5904234 | None:intergenic | 40.0% |
| ! | GTCAGATGATGTTGCTTCTT+GGG | + | chr2_2:5904360-5904379 | Msa0233560:CDS | 40.0% |
| ACATTGCAGTATGATTGCAC+CGG | - | chr2_2:5904824-5904843 | None:intergenic | 40.0% | |
| GCAATTCGCTTCATGACATA+CGG | - | chr2_2:5905110-5905129 | None:intergenic | 40.0% | |
| GAGTTAGACCCTATGATCAA+TGG | - | chr2_2:5905265-5905284 | None:intergenic | 40.0% | |
| TCAACCAACCAACATTTGGT+TGG | - | chr2_2:5905333-5905352 | None:intergenic | 40.0% | |
| GGCGAGATTGAAAGGTTTGA+TGG | + | chr2_2:5902634-5902653 | Msa0233560:exon | 45.0% | |
| !! | TTGATGGTGTCTCTTCCACT+TGG | + | chr2_2:5902650-5902669 | Msa0233560:exon | 45.0% |
| !! | TAGTACCTGGTGTCATTGGA+TGG | + | chr2_2:5902705-5902724 | Msa0233560:CDS | 45.0% |
| TGTCATTGGATGGAGCAAAG+AGG | + | chr2_2:5902715-5902734 | Msa0233560:CDS | 45.0% | |
| GTCATTGGATGGAGCAAAGA+GGG | + | chr2_2:5902716-5902735 | Msa0233560:CDS | 45.0% | |
| ATAACCAGACACACTAGTCG+AGG | - | chr2_2:5902792-5902811 | None:intergenic | 45.0% | |
| CTGCAACACACATATCCTCA+TGG | - | chr2_2:5903617-5903636 | None:intergenic | 45.0% | |
| CATGAGGATATGTGTGTTGC+AGG | + | chr2_2:5903615-5903634 | Msa0233560:intron | 45.0% | |
| ATATTTCAGCCGATGCACGT+TGG | + | chr2_2:5903950-5903969 | Msa0233560:intron | 45.0% | |
| GTTGGATTCACCTCAGACAA+AGG | + | chr2_2:5903968-5903987 | Msa0233560:CDS | 45.0% | |
| TGTGTTTCCACCTTTGTCTG+AGG | - | chr2_2:5903981-5904000 | None:intergenic | 45.0% | |
| TTTCTTGGATGCAGGGAATC+TGG | + | chr2_2:5904338-5904357 | Msa0233560:intron | 45.0% | |
| ! | GGTCAGATGATGTTGCTTCT+TGG | + | chr2_2:5904359-5904378 | Msa0233560:CDS | 45.0% |
| TGCTTCTTGGGAACATTGCA+AGG | + | chr2_2:5904372-5904391 | Msa0233560:CDS | 45.0% | |
| GCTTGCAAATGGGGTTATGA+AGG | + | chr2_2:5904556-5904575 | Msa0233560:CDS | 45.0% | |
| TCATGGTTCGATCTTCTACC+AGG | - | chr2_2:5904679-5904698 | None:intergenic | 45.0% | |
| AGATCGAACCATGAGACATC+CGG | + | chr2_2:5904685-5904704 | Msa0233560:intron | 45.0% | |
| CATCCGGATCATGACTCAAT+TGG | + | chr2_2:5904701-5904720 | Msa0233560:intron | 45.0% | |
| GTCATGAAGCGAATTGCTCA+AGG | + | chr2_2:5905113-5905132 | Msa0233560:CDS | 45.0% | |
| ATGAAGCGAATTGCTCAAGG+TGG | + | chr2_2:5905116-5905135 | Msa0233560:CDS | 45.0% | |
| CTTCAGAGTCTCCAAACACT+TGG | - | chr2_2:5905166-5905185 | None:intergenic | 45.0% | |
| ! | GTGTTTGGAGACTCTGAAGA+AGG | + | chr2_2:5905167-5905186 | Msa0233560:CDS | 45.0% |
| GTTGCTCACCAACCAAATGT+TGG | + | chr2_2:5905322-5905341 | Msa0233560:three_prime_UTR | 45.0% | |
| CTCACCAACCAAATGTTGGT+TGG | + | chr2_2:5905326-5905345 | Msa0233560:three_prime_UTR | 45.0% | |
| !! | TAAATAAATAAGTATTAAAA+TGG | + | chr2_2:5904761-5904780 | Msa0233560:intron | 5.0% |
| TTGCTCCATCCAATGACACC+AGG | - | chr2_2:5902713-5902732 | None:intergenic | 50.0% | |
| TGAACTGCTTCTGATGCCTC+AGG | - | chr2_2:5903332-5903351 | None:intergenic | 50.0% | |
| GGCCTGATCAAATTAGGCAC+TGG | + | chr2_2:5903402-5903421 | Msa0233560:CDS | 50.0% | |
| AAACATAGGGGACTGCCATG+AGG | + | chr2_2:5903599-5903618 | Msa0233560:intron | 50.0% | |
| GAGGTGAATCCAACGTGCAT+CGG | - | chr2_2:5903962-5903981 | None:intergenic | 50.0% | |
| GGATTCACCTCAGACAAAGG+TGG | + | chr2_2:5903971-5903990 | Msa0233560:CDS | 50.0% | |
| GTCATGATCCGGATGTCTCA+TGG | - | chr2_2:5904696-5904715 | None:intergenic | 50.0% | |
| TGAACCAACCACGGTTGAAC+CGG | + | chr2_2:5904802-5904821 | Msa0233560:intron | 50.0% | |
| ACACTAGTCGAGGAGGGCTA+GGG | - | chr2_2:5902782-5902801 | None:intergenic | 55.0% | |
| CCAGACACACTAGTCGAGGA+GGG | - | chr2_2:5902788-5902807 | None:intergenic | 55.0% | |
| ACCAGACACACTAGTCGAGG+AGG | - | chr2_2:5902789-5902808 | None:intergenic | 55.0% | |
| !! | TGATTGCACCGGTTCAACCG+TGG | - | chr2_2:5904813-5904832 | None:intergenic | 55.0% |
| CACACTAGTCGAGGAGGGCT+AGG | - | chr2_2:5902783-5902802 | None:intergenic | 60.0% | |
| CCCTCCTCGACTAGTGTGTC+TGG | + | chr2_2:5902785-5902804 | Msa0233560:intron | 60.0% | |
| !! | TGCACCGGTTCAACCGTGGT+TGG | - | chr2_2:5904809-5904828 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5902595 | 5905483 | 5902595 | ID=Msa0233560;Name=Msa0233560 |
| chr2_2 | mRNA | 5902595 | 5905483 | 5902595 | ID=Msa0233560-mRNA-1;Parent=Msa0233560;Name=Msa0233560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=58|0.87|0.88|1|1|1|9|275|285 |
| chr2_2 | exon | 5902595 | 5902766 | 5902595 | ID=Msa0233560-mRNA-1:exon:2584;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5903317 | 5903497 | 5903317 | ID=Msa0233560-mRNA-1:exon:2585;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5903637 | 5903699 | 5903637 | ID=Msa0233560-mRNA-1:exon:2586;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5903821 | 5903876 | 5903821 | ID=Msa0233560-mRNA-1:exon:2587;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5903959 | 5904042 | 5903959 | ID=Msa0233560-mRNA-1:exon:2588;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5904150 | 5904245 | 5904150 | ID=Msa0233560-mRNA-1:exon:2589;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5904352 | 5904416 | 5904352 | ID=Msa0233560-mRNA-1:exon:2590;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5904531 | 5904604 | 5904531 | ID=Msa0233560-mRNA-1:exon:2591;Parent=Msa0233560-mRNA-1 |
| chr2_2 | exon | 5905084 | 5905483 | 5905084 | ID=Msa0233560-mRNA-1:exon:2592;Parent=Msa0233560-mRNA-1 |
| chr2_2 | five_prime_UTR | 5902595 | 5902652 | 5902595 | ID=Msa0233560-mRNA-1:five_prime_utr;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5902653 | 5902766 | 5902653 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5903317 | 5903497 | 5903317 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5903637 | 5903699 | 5903637 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5903821 | 5903876 | 5903821 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5903959 | 5904042 | 5903959 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5904150 | 5904245 | 5904150 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5904352 | 5904416 | 5904352 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5904531 | 5904604 | 5904531 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | CDS | 5905084 | 5905208 | 5905084 | ID=Msa0233560-mRNA-1:cds;Parent=Msa0233560-mRNA-1 |
| chr2_2 | three_prime_UTR | 5905209 | 5905483 | 5905209 | ID=Msa0233560-mRNA-1:three_prime_utr;Parent=Msa0233560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
