Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312220 | XP_003593464.1 | 93.709 | 302 | 7 | 1 | 1 | 290 | 1 | 302 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312220 | sp|Q9SXA6|ENDO1_ARATH | 67.138 | 283 | 75 | 3 | 26 | 290 | 23 | 305 | 7.78e-139 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054530 | Msa0312220 | 0.804930 | 1.705349e-49 | -8.615850e-47 |
| Msa0191460 | Msa0312220 | 0.890399 | 1.020678e-73 | -8.615850e-47 |
| Msa0191560 | Msa0312220 | 0.890930 | 6.307443e-74 | -8.615850e-47 |
| Msa0233560 | Msa0312220 | 0.877416 | 6.397752e-69 | -8.615850e-47 |
| Msa0312220 | Msa1072520 | 0.833508 | 5.122021e-56 | -8.615850e-47 |
| Msa0312220 | Msa1117910 | 0.829995 | 3.766533e-55 | -8.615850e-47 |
| Msa0312220 | Msa1338370 | 0.814257 | 1.689352e-51 | -8.615850e-47 |
| Msa0312220 | Msa1339150 | 0.804439 | 2.159480e-49 | -8.615850e-47 |
| Msa0312220 | Msa1396020 | 0.826184 | 3.117271e-54 | -8.615850e-47 |
| Msa0312220 | Msa1435360 | 0.808124 | 3.613620e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312220 | MtrunA17_Chr2g0281321 | 94.318 | 264 | 3 | 1 | 39 | 290 | 1 | 264 | 0.0 | 520 |
| Msa0312220 | MtrunA17_Chr4g0048061 | 50.735 | 272 | 114 | 5 | 27 | 279 | 59 | 329 | 9.27e-98 | 290 |
| Msa0312220 | MtrunA17_Chr1g0209691 | 44.876 | 283 | 132 | 6 | 15 | 279 | 7 | 283 | 7.73e-86 | 258 |
| Msa0312220 | MtrunA17_Chr5g0423341 | 44.718 | 284 | 132 | 7 | 16 | 279 | 8 | 286 | 3.84e-81 | 246 |
| Msa0312220 | MtrunA17_Chr5g0423351 | 43.860 | 285 | 137 | 6 | 16 | 281 | 8 | 288 | 1.10e-78 | 240 |
| Msa0312220 | MtrunA17_Chr1g0170511 | 51.471 | 136 | 60 | 2 | 26 | 155 | 21 | 156 | 4.67e-45 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312220 | AT1G11190.1 | 67.138 | 283 | 75 | 3 | 26 | 290 | 23 | 305 | 7.90e-140 | 396 |
| Msa0312220 | AT4G21585.4 | 49.455 | 275 | 119 | 5 | 25 | 280 | 18 | 291 | 6.75e-96 | 285 |
| Msa0312220 | AT4G21585.1 | 49.455 | 275 | 119 | 5 | 25 | 280 | 18 | 291 | 6.75e-96 | 285 |
| Msa0312220 | AT1G68290.1 | 47.651 | 298 | 130 | 7 | 1 | 280 | 1 | 290 | 4.90e-95 | 282 |
| Msa0312220 | AT4G21585.3 | 44.590 | 305 | 123 | 6 | 25 | 284 | 18 | 321 | 5.08e-90 | 271 |
| Msa0312220 | AT4G21585.6 | 44.300 | 307 | 123 | 6 | 25 | 284 | 18 | 323 | 1.07e-89 | 270 |
| Msa0312220 | AT4G21590.1 | 48.327 | 269 | 124 | 4 | 25 | 279 | 18 | 285 | 1.98e-87 | 263 |
| Msa0312220 | AT4G21590.2 | 48.327 | 269 | 124 | 4 | 25 | 279 | 18 | 285 | 1.98e-87 | 263 |
| Msa0312220 | AT4G21600.1 | 46.182 | 275 | 127 | 6 | 25 | 279 | 14 | 287 | 5.38e-83 | 252 |
| Msa0312220 | AT4G21585.2 | 44.898 | 245 | 101 | 5 | 25 | 236 | 18 | 261 | 3.53e-72 | 223 |
| Msa0312220 | AT4G21585.5 | 44.898 | 245 | 101 | 5 | 25 | 236 | 18 | 261 | 3.53e-72 | 223 |
Find 73 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTCTTGTCACACTTTA+TGG | 0.191189 | 2_4:+7245433 | Msa0312220:CDS |
| GTGTATGGCCTGATCAAATT+AGG | 0.272622 | 2_4:+7244989 | Msa0312220:CDS |
| TGTCAATGACCATTGATCAT+AGG | 0.323275 | 2_4:+7246884 | Msa0312220:three_prime_UTR |
| GTCAGATGATGTTGCTTCTT+GGG | 0.326798 | 2_4:+7245989 | Msa0312220:CDS |
| GGTCAGATGATGTTGCTTCT+TGG | 0.337853 | 2_4:+7245988 | Msa0312220:CDS |
| TTATGAATTTGACAAACTTT+TGG | 0.342788 | 2_4:+7247087 | Msa0312220:three_prime_UTR |
| AATATTAGATATGGCGAGAT+TGG | 0.347608 | 2_4:+7244206 | Msa0312220:exon |
| TTTCTTGGATGCAGGGAATC+TGG | 0.348070 | 2_4:+7245967 | Msa0312220:intron |
| GGTAACAAAATTAAACATAT+AGG | 0.349460 | 2_4:+7244173 | None:intergenic |
| TTGTTCTTGTCACACTTTAT+GGG | 0.352767 | 2_4:+7245434 | Msa0312220:CDS |
| ATCATAGTACCTGGTGTCAT+TGG | 0.368732 | 2_4:+7244285 | Msa0312220:CDS |
| CATGAGGATATGTGTGTTGC+AGG | 0.383138 | 2_4:+7245208 | Msa0312220:CDS |
| GGCGAGATTGGAAGGTTTGA+TGG | 0.384420 | 2_4:+7244218 | Msa0312220:CDS |
| TTGATCAACCAACCAACATT+TGG | 0.385338 | 2_4:-7246965 | None:intergenic |
| ACTTATCAGCCCTTTGTGTA+TGG | 0.393900 | 2_4:+7244974 | Msa0312220:CDS |
| CATTAACAATTAAGAAGAAA+TGG | 0.399046 | 2_4:-7246915 | None:intergenic |
| GTAACAAAATTAAACATATA+GGG | 0.399584 | 2_4:+7244174 | None:intergenic |
| ATGATTCTGAACCAAGTGTT+TGG | 0.402598 | 2_4:+7246783 | Msa0312220:CDS |
| TACCAGTGCCTAATTTGATC+AGG | 0.423305 | 2_4:-7244997 | None:intergenic |
| GCATACAAATAGCTTGCAAA+TGG | 0.430035 | 2_4:+7246174 | Msa0312220:CDS |
| GGCACTGGTACAAATATAGA+TGG | 0.436647 | 2_4:+7245010 | Msa0312220:CDS |
| TATTTACACATATGTTGAGT+TGG | 0.440214 | 2_4:-7247046 | None:intergenic |
| CATACAAATAGCTTGCAAAT+GGG | 0.452050 | 2_4:+7246175 | Msa0312220:CDS |
| GTCAATGACCATTGATCATA+GGG | 0.456849 | 2_4:+7246885 | Msa0312220:three_prime_UTR |
| CTTCAGAGTCTCCAAACACT+TGG | 0.462625 | 2_4:-7246794 | None:intergenic |
| TTGATGGTGTCTCTTCCACT+TGG | 0.484743 | 2_4:+7244234 | Msa0312220:CDS |
| AAACACTTGGTTCAGAATCA+TGG | 0.494857 | 2_4:-7246781 | None:intergenic |
| TGAACTGCTTCTGATGCCTC+AGG | 0.499507 | 2_4:-7244922 | None:intergenic |
| CAGAAGAATACTTTGACTCA+AGG | 0.500412 | 2_4:+7246712 | Msa0312220:intron |
| CAACTTTCTCATTACAAAGA+GGG | 0.507826 | 2_4:+7245253 | Msa0312220:CDS |
| TGCTTCTTGGGAACATTGCA+AGG | 0.512844 | 2_4:+7246001 | Msa0312220:CDS |
| GTGTTTGGAGACTCTGAAGA+AGG | 0.514236 | 2_4:+7246798 | Msa0312220:CDS |
| TTGTTACCTCCCCATGTCAA+TGG | 0.519904 | 2_4:+7244949 | Msa0312220:CDS |
| TCAACCAACCAACATTTGGT+TGG | 0.522893 | 2_4:-7246961 | None:intergenic |
| GAGTTAGACCCTATGATCAA+TGG | 0.527641 | 2_4:-7246893 | None:intergenic |
| TTGATCAGGCCATACACAAA+GGG | 0.534241 | 2_4:-7244983 | None:intergenic |
| GTCATTGGATGGAGCAAAGA+GGG | 0.537487 | 2_4:+7244300 | Msa0312220:CDS |
| TAGTACCTGGTGTCATTGGA+TGG | 0.539152 | 2_4:+7244289 | Msa0312220:CDS |
| TTAGATATGGCGAGATTGGA+AGG | 0.540253 | 2_4:+7244210 | Msa0312220:exon |
| CAATTGATCTACGCTGGTAT+CGG | 0.540639 | 2_4:+7245592 | Msa0312220:CDS |
| GCAATTCGCTTCATGACATA+CGG | 0.542919 | 2_4:-7246738 | None:intergenic |
| AGACTCTGAAGAAGGATTTG+TGG | 0.545154 | 2_4:+7246806 | Msa0312220:CDS |
| CTCACCAACCAAATGTTGGT+TGG | 0.545619 | 2_4:+7246957 | Msa0312220:three_prime_UTR |
| AATGTTGGTTGGTTGATCAA+AGG | 0.563416 | 2_4:+7246968 | Msa0312220:three_prime_UTR |
| TCAACTTTCTCATTACAAAG+AGG | 0.566465 | 2_4:+7245252 | Msa0312220:CDS |
| CTGATAAGTTACCATTGACA+TGG | 0.566583 | 2_4:-7244960 | None:intergenic |
| TCTACTTTCATCATAGTACC+TGG | 0.569857 | 2_4:+7244276 | Msa0312220:CDS |
| GGCCTGATCAAATTAGGCAC+TGG | 0.574012 | 2_4:+7244995 | Msa0312220:CDS |
| GAGGTGAATCCAACGTGCAT+CGG | 0.577676 | 2_4:-7245552 | None:intergenic |
| GTTGGATTCACCTCAGACAA+AGG | 0.581712 | 2_4:+7245561 | Msa0312220:CDS |
| TGTGTTTCCACCTTTGTCTG+AGG | 0.582088 | 2_4:-7245571 | None:intergenic |
| GATGACATGTCTAATTGCAC+AGG | 0.594566 | 2_4:+7244329 | Msa0312220:CDS |
| ATACAAATAGCTTGCAAATG+GGG | 0.599056 | 2_4:+7246176 | Msa0312220:CDS |
| CTGCAACACACATATCCTCA+TGG | 0.607440 | 2_4:-7245207 | None:intergenic |
| CTTTATGGGAGATATTCACC+AGG | 0.613075 | 2_4:+7245448 | Msa0312220:CDS |
| AAGTTACCATTGACATGGGG+AGG | 0.613267 | 2_4:-7244955 | None:intergenic |
| GAAACACAATTGATCTACGC+TGG | 0.614736 | 2_4:+7245586 | Msa0312220:CDS |
| TTTGATCAGGCCATACACAA+AGG | 0.615065 | 2_4:-7244984 | None:intergenic |
| GTCATGAAGCGAATTGCTCA+AGG | 0.617583 | 2_4:+7246744 | Msa0312220:CDS |
| TGATAAGTTACCATTGACAT+GGG | 0.619961 | 2_4:-7244959 | None:intergenic |
| TGACAAGAACAATAATGCCT+CGG | 0.623745 | 2_4:-7245423 | None:intergenic |
| GTTGCTCACCAACCAAATGT+TGG | 0.626369 | 2_4:+7246953 | Msa0312220:three_prime_UTR |
| GGTGTGTCAATGAAATGAAG+TGG | 0.644809 | 2_4:-7245039 | None:intergenic |
| TTGCTCCATCCAATGACACC+AGG | 0.646308 | 2_4:-7244294 | None:intergenic |
| AAGAACAACACAAATCCAAG+TGG | 0.649453 | 2_4:-7244249 | None:intergenic |
| TGTCATTGGATGGAGCAAAG+AGG | 0.656727 | 2_4:+7244299 | Msa0312220:CDS |
| ACAAAATTAAACATATAGGG+TGG | 0.671696 | 2_4:+7244177 | None:intergenic |
| GGATTCACCTCAGACAAAGG+TGG | 0.681668 | 2_4:+7245564 | Msa0312220:CDS |
| ATGAAGCGAATTGCTCAAGG+TGG | 0.685248 | 2_4:+7246747 | Msa0312220:CDS |
| ATATTTCAGCCGATGCACGT+TGG | 0.693369 | 2_4:+7245543 | Msa0312220:intron |
| AAACATAGGGGACTGCCATG+AGG | 0.699367 | 2_4:+7245192 | Msa0312220:intron |
| TATTGCAGATAATATGACCG+AGG | 0.722861 | 2_4:+7245406 | Msa0312220:intron |
| GATAAGTTACCATTGACATG+GGG | 0.735979 | 2_4:-7244958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATGTTGATTTTATT+TGG | - | chr2_4:7245949-7245968 | None:intergenic | 10.0% |
| !!! | TATTTTTTAGAATTGTCTTT+CGG | - | chr2_4:7244701-7244720 | None:intergenic | 15.0% |
| !! | TATTATTGGAATCATAATTA+TGG | + | chr2_4:7244854-7244873 | Msa0312220:intron | 15.0% |
| !! | ATAATTTCTATATGATTGAT+AGG | + | chr2_4:7244888-7244907 | Msa0312220:intron | 15.0% |
| !!! | ATTTGTATATGTAGTTATTT+TGG | + | chr2_4:7245100-7245119 | Msa0312220:intron | 15.0% |
| !! | TAAGTATAAAAATTTCTGAA+AGG | - | chr2_4:7245327-7245346 | None:intergenic | 15.0% |
| !! | TTTATCAAATTAATCTTATC+TGG | - | chr2_4:7245514-7245533 | None:intergenic | 15.0% |
| !!! | TTAAATATTGTTACTTACAT+TGG | - | chr2_4:7245872-7245891 | None:intergenic | 15.0% |
| !!! | AAAATCAACATATTATTTCT+TGG | + | chr2_4:7245952-7245971 | Msa0312220:intron | 15.0% |
| !! | TCTAAACATTAATTAACATT+AGG | - | chr2_4:7246099-7246118 | None:intergenic | 15.0% |
| !! | AATGTTTAGATTTCTTATAT+TGG | + | chr2_4:7246109-7246128 | Msa0312220:intron | 15.0% |
| !!! | TTATTTATTAATTTGTCATC+TGG | - | chr2_4:7246381-7246400 | None:intergenic | 15.0% |
| !! | CTAAAAAAAACAAAAAATCA+TGG | - | chr2_4:7246639-7246658 | None:intergenic | 15.0% |
| !!! | AATTTAAAGAACTAATTTTC+TGG | - | chr2_4:7246864-7246883 | None:intergenic | 15.0% |
| !! | TGGTTGAAAAATATTAGATA+TGG | + | chr2_4:7244197-7244216 | Msa0312220:exon | 20.0% |
| !! | AAAATGATATTTAGTGTGTT+TGG | + | chr2_4:7244415-7244434 | Msa0312220:intron | 20.0% |
| !! | AAGTCAAACATAACTATTTA+TGG | + | chr2_4:7244656-7244675 | Msa0312220:intron | 20.0% |
| !! | GTCAAGAAAATAATATTAAC+CGG | + | chr2_4:7245380-7245399 | Msa0312220:intron | 20.0% |
| !! | AAACATTAATTAACATTAGG+AGG | - | chr2_4:7246096-7246115 | None:intergenic | 20.0% |
| !!! | TTTCTAAAACATTGCTTTAA+AGG | + | chr2_4:7246553-7246572 | Msa0312220:intron | 20.0% |
| !! | AAAAAAACAAAAAATCATGG+AGG | - | chr2_4:7246636-7246655 | None:intergenic | 20.0% |
| !! | CATTAACAATTAAGAAGAAA+TGG | - | chr2_4:7246918-7246937 | None:intergenic | 20.0% |
| !!! | TTATGAATTTGACAAACTTT+TGG | + | chr2_4:7247087-7247106 | Msa0312220:three_prime_UTR | 20.0% |
| !!! | TACACACTTAGATTTGATTT+TGG | + | chr2_4:7244609-7244628 | Msa0312220:intron | 25.0% |
| !!! | ACACACTTAGATTTGATTTT+GGG | + | chr2_4:7244610-7244629 | Msa0312220:intron | 25.0% |
| ! | CTGGTTATGAATAAGTATAA+GGG | + | chr2_4:7244771-7244790 | Msa0312220:intron | 25.0% |
| !!! | GGGTAATTTTTTTTTGAACA+AGG | + | chr2_4:7244821-7244840 | Msa0312220:intron | 25.0% |
| ! | TACTTCATGATATCAATTAC+TGG | + | chr2_4:7245350-7245369 | Msa0312220:intron | 25.0% |
| ! | TAAAAATCTTTAGACAAACC+TGG | - | chr2_4:7245469-7245488 | None:intergenic | 25.0% |
| ! | ATCAAATTAATCTTATCTGG+TGG | - | chr2_4:7245511-7245530 | None:intergenic | 25.0% |
| !! | AAGAATCTAAAATTCGCTTA+AGG | - | chr2_4:7245685-7245704 | None:intergenic | 25.0% |
| !! | TTTTAGATTCTTCATGCTAA+AGG | + | chr2_4:7245693-7245712 | Msa0312220:intron | 25.0% |
| !!! | TTTTCTTGTTTATGCTCATA+AGG | + | chr2_4:7245756-7245775 | Msa0312220:intron | 25.0% |
| !! | TATAGTTTTTCTCAATGTCT+TGG | - | chr2_4:7245849-7245868 | None:intergenic | 25.0% |
| !! | TTTTGAACTAATCATGTAGT+TGG | + | chr2_4:7246141-7246160 | Msa0312220:intron | 25.0% |
| ! | TTTGAACTAATCATGTAGTT+GGG | + | chr2_4:7246142-7246161 | Msa0312220:intron | 25.0% |
| ! | TCAATAAGTGGTTGAATTTA+TGG | - | chr2_4:7246254-7246273 | None:intergenic | 25.0% |
| ! | AAATTCAACCACTTATTGAT+AGG | + | chr2_4:7246255-7246274 | Msa0312220:intron | 25.0% |
| ! | TGGTTTAATCAATACAACTA+CGG | + | chr2_4:7246350-7246369 | Msa0312220:intron | 25.0% |
| ! | AAAATATATTGAACCAACCA+CGG | + | chr2_4:7246422-7246441 | Msa0312220:intron | 25.0% |
| ! | TATTTACACATATGTTGAGT+TGG | - | chr2_4:7247049-7247068 | None:intergenic | 25.0% |
| AATATTAGATATGGCGAGAT+TGG | + | chr2_4:7244206-7244225 | Msa0312220:exon | 30.0% | |
| TTAGTACTGCGTTTGTAAAA+CGG | - | chr2_4:7244564-7244583 | None:intergenic | 30.0% | |
| !! | CTTAGATTTGATTTTGGGAA+TGG | + | chr2_4:7244615-7244634 | Msa0312220:intron | 30.0% |
| GTATCAAATGATTATCATGC+TGG | + | chr2_4:7244752-7244771 | Msa0312220:intron | 30.0% | |
| GCTGGTTATGAATAAGTATA+AGG | + | chr2_4:7244770-7244789 | Msa0312220:intron | 30.0% | |
| AAATCACTGTTACTCTTGAA+GGG | + | chr2_4:7244801-7244820 | Msa0312220:intron | 30.0% | |
| !!! | TTTTTTGAACAAGGTCATGA+AGG | + | chr2_4:7244830-7244849 | Msa0312220:intron | 30.0% |
| ! | TTTTTGAACAAGGTCATGAA+GGG | + | chr2_4:7244831-7244850 | Msa0312220:intron | 30.0% |
| TGATAAGTTACCATTGACAT+GGG | - | chr2_4:7244962-7244981 | None:intergenic | 30.0% | |
| ! | TGAAATCCACATTTTTCATC+TGG | - | chr2_4:7245063-7245082 | None:intergenic | 30.0% |
| ! | TTGTTGCTGTTAACAAACAT+AGG | + | chr2_4:7245178-7245197 | Msa0312220:intron | 30.0% |
| ! | TGTTGCTGTTAACAAACATA+GGG | + | chr2_4:7245179-7245198 | Msa0312220:intron | 30.0% |
| TCAACTTTCTCATTACAAAG+AGG | + | chr2_4:7245252-7245271 | Msa0312220:CDS | 30.0% | |
| CAACTTTCTCATTACAAAGA+GGG | + | chr2_4:7245253-7245272 | Msa0312220:CDS | 30.0% | |
| ATTGTTCTTGTCACACTTTA+TGG | + | chr2_4:7245433-7245452 | Msa0312220:CDS | 30.0% | |
| TTGTTCTTGTCACACTTTAT+GGG | + | chr2_4:7245434-7245453 | Msa0312220:CDS | 30.0% | |
| AAAATATGTTACTAGCAGAC+TGG | + | chr2_4:7245644-7245663 | Msa0312220:intron | 30.0% | |
| !!! | TGAACACGTGGATTTTTTAT+TGG | + | chr2_4:7245921-7245940 | Msa0312220:intron | 30.0% |
| ! | ACATATTATTTCTTGGATGC+AGG | + | chr2_4:7245959-7245978 | Msa0312220:intron | 30.0% |
| ! | CATATTATTTCTTGGATGCA+GGG | + | chr2_4:7245960-7245979 | Msa0312220:intron | 30.0% |
| GAGATTGATGAAATTGAAAG+TGG | - | chr2_4:7246067-7246086 | None:intergenic | 30.0% | |
| ! | CATACAAATAGCTTGCAAAT+GGG | + | chr2_4:7246175-7246194 | Msa0312220:CDS | 30.0% |
| ! | ATACAAATAGCTTGCAAATG+GGG | + | chr2_4:7246176-7246195 | Msa0312220:CDS | 30.0% |
| !!! | AAAGCAACGTTTTAAAAACC+TGG | + | chr2_4:7246287-7246306 | Msa0312220:intron | 30.0% |
| GGTTTAATCAATACAACTAC+GGG | + | chr2_4:7246351-7246370 | Msa0312220:intron | 30.0% | |
| AAGCAACAAATTTGTGAAAC+AGG | + | chr2_4:7246609-7246628 | Msa0312220:intron | 30.0% | |
| CATCATTCATTCCATGTTAA+AGG | + | chr2_4:7246665-7246684 | Msa0312220:intron | 30.0% | |
| TGCAACAAAATCCTTTAACA+TGG | - | chr2_4:7246679-7246698 | None:intergenic | 30.0% | |
| TGAGCAACAAAAAATCAAAC+AGG | - | chr2_4:7246941-7246960 | None:intergenic | 30.0% | |
| AAGAACAACACAAATCCAAG+TGG | - | chr2_4:7244252-7244271 | None:intergenic | 35.0% | |
| TCTACTTTCATCATAGTACC+TGG | + | chr2_4:7244276-7244295 | Msa0312220:CDS | 35.0% | |
| ! | CTATGTTTGTTAGTTGAGGA+GGG | - | chr2_4:7244372-7244391 | None:intergenic | 35.0% |
| ! | ACTATGTTTGTTAGTTGAGG+AGG | - | chr2_4:7244373-7244392 | None:intergenic | 35.0% |
| ! | CACACTATGTTTGTTAGTTG+AGG | - | chr2_4:7244376-7244395 | None:intergenic | 35.0% |
| ACTAACAAACATAGTGTGTC+TGG | + | chr2_4:7244378-7244397 | Msa0312220:intron | 35.0% | |
| ! | AAATCATGGCAAAAAAGCAC+CGG | - | chr2_4:7244479-7244498 | None:intergenic | 35.0% |
| GTTAGCTAGAAGCTAGTATT+TGG | - | chr2_4:7244511-7244530 | None:intergenic | 35.0% | |
| CAAATCACTGTTACTCTTGA+AGG | + | chr2_4:7244800-7244819 | Msa0312220:intron | 35.0% | |
| !! | AAGGTCATGAAGGGTATTAT+TGG | + | chr2_4:7244840-7244859 | Msa0312220:intron | 35.0% |
| GATAAGTTACCATTGACATG+GGG | - | chr2_4:7244961-7244980 | None:intergenic | 35.0% | |
| CTGATAAGTTACCATTGACA+TGG | - | chr2_4:7244963-7244982 | None:intergenic | 35.0% | |
| ! | GTTGCTGTTAACAAACATAG+GGG | + | chr2_4:7245180-7245199 | Msa0312220:intron | 35.0% |
| AACATCTGATCGTAGATGTA+AGG | + | chr2_4:7245276-7245295 | Msa0312220:intron | 35.0% | |
| ACATCTGATCGTAGATGTAA+GGG | + | chr2_4:7245277-7245296 | Msa0312220:intron | 35.0% | |
| CATATTATCTGCAATATCGC+CGG | - | chr2_4:7245402-7245421 | None:intergenic | 35.0% | |
| TATTGCAGATAATATGACCG+AGG | + | chr2_4:7245406-7245425 | Msa0312220:intron | 35.0% | |
| TGACAAGAACAATAATGCCT+CGG | - | chr2_4:7245426-7245445 | None:intergenic | 35.0% | |
| TTGTTTATGCTCATAAGGTG+TGG | + | chr2_4:7245761-7245780 | Msa0312220:intron | 35.0% | |
| TGTTTATGCTCATAAGGTGT+GGG | + | chr2_4:7245762-7245781 | Msa0312220:intron | 35.0% | |
| ! | AGTTTTTCTCAATGTCTTGG+AGG | - | chr2_4:7245846-7245865 | None:intergenic | 35.0% |
| CCACGTGTTCATTAAAATCT+AGG | - | chr2_4:7245912-7245931 | None:intergenic | 35.0% | |
| !! | CCTAGATTTTAATGAACACG+TGG | + | chr2_4:7245909-7245928 | Msa0312220:intron | 35.0% |
| ! | GCATACAAATAGCTTGCAAA+TGG | + | chr2_4:7246174-7246193 | Msa0312220:CDS | 35.0% |
| GGTTATGAAGGAGTTAAATC+TGG | + | chr2_4:7246197-7246216 | Msa0312220:intron | 35.0% | |
| ! | AAATCTGGAATGACTCTATC+AGG | + | chr2_4:7246212-7246231 | Msa0312220:intron | 35.0% |
| AAGAGAAGCCTATCAATAAG+TGG | - | chr2_4:7246266-7246285 | None:intergenic | 35.0% | |
| AAACCAATTGAGTCATGATC+CGG | - | chr2_4:7246336-7246355 | None:intergenic | 35.0% | |
| !! | TTTGTCGGTTAGTTTGATCT+CGG | - | chr2_4:7246486-7246505 | None:intergenic | 35.0% |
| !! | CATAGAACTGACTAGTTTGT+CGG | - | chr2_4:7246501-7246520 | None:intergenic | 35.0% |
| TAGTCAGTTCTATGTTCAAC+CGG | + | chr2_4:7246507-7246526 | Msa0312220:intron | 35.0% | |
| ! | CTATGTTCAACCGGTTTAAT+TGG | + | chr2_4:7246516-7246535 | Msa0312220:intron | 35.0% |
| ACTGAACTAGCCAATTAAAC+CGG | - | chr2_4:7246529-7246548 | None:intergenic | 35.0% | |
| ! | AAAGGATTTTGTTGCATGTG+TGG | + | chr2_4:7246683-7246702 | Msa0312220:intron | 35.0% |
| CAGAAGAATACTTTGACTCA+AGG | + | chr2_4:7246712-7246731 | Msa0312220:intron | 35.0% | |
| AAACACTTGGTTCAGAATCA+TGG | - | chr2_4:7246784-7246803 | None:intergenic | 35.0% | |
| ATGATTCTGAACCAAGTGTT+TGG | + | chr2_4:7246783-7246802 | Msa0312220:CDS | 35.0% | |
| TGTCAATGACCATTGATCAT+AGG | + | chr2_4:7246884-7246903 | Msa0312220:three_prime_UTR | 35.0% | |
| GTCAATGACCATTGATCATA+GGG | + | chr2_4:7246885-7246904 | Msa0312220:three_prime_UTR | 35.0% | |
| TTGATCAACCAACCAACATT+TGG | - | chr2_4:7246968-7246987 | None:intergenic | 35.0% | |
| ! | AATGTTGGTTGGTTGATCAA+AGG | + | chr2_4:7246968-7246987 | Msa0312220:three_prime_UTR | 35.0% |
| TTAGATATGGCGAGATTGGA+AGG | + | chr2_4:7244210-7244229 | Msa0312220:exon | 40.0% | |
| !! | ATCATAGTACCTGGTGTCAT+TGG | + | chr2_4:7244285-7244304 | Msa0312220:CDS | 40.0% |
| GATGACATGTCTAATTGCAC+AGG | + | chr2_4:7244329-7244348 | Msa0312220:CDS | 40.0% | |
| ! | TGCTTTTGTGTGTTGCAAAC+GGG | - | chr2_4:7244444-7244463 | None:intergenic | 40.0% |
| ! | GTGCTTTTGTGTGTTGCAAA+CGG | - | chr2_4:7244445-7244464 | None:intergenic | 40.0% |
| ! | AAAAGCACGTATGCACTTTC+CGG | + | chr2_4:7244457-7244476 | Msa0312220:intron | 40.0% |
| ! | TTTGGAGCTTCTGGAAATCA+TGG | - | chr2_4:7244493-7244512 | None:intergenic | 40.0% |
| ! | AAGCTAGTATTTGGAGCTTC+TGG | - | chr2_4:7244502-7244521 | None:intergenic | 40.0% |
| !!! | ATAGGCACTTTTAAAGCCTG+AGG | + | chr2_4:7244906-7244925 | Msa0312220:intron | 40.0% |
| ACTTATCAGCCCTTTGTGTA+TGG | + | chr2_4:7244974-7244993 | Msa0312220:CDS | 40.0% | |
| TTGATCAGGCCATACACAAA+GGG | - | chr2_4:7244986-7245005 | None:intergenic | 40.0% | |
| TTTGATCAGGCCATACACAA+AGG | - | chr2_4:7244987-7245006 | None:intergenic | 40.0% | |
| GTGTATGGCCTGATCAAATT+AGG | + | chr2_4:7244989-7245008 | Msa0312220:CDS | 40.0% | |
| TACCAGTGCCTAATTTGATC+AGG | - | chr2_4:7245000-7245019 | None:intergenic | 40.0% | |
| !! | GGCACTGGTACAAATATAGA+TGG | + | chr2_4:7245010-7245029 | Msa0312220:CDS | 40.0% |
| GGTGTGTCAATGAAATGAAG+TGG | - | chr2_4:7245042-7245061 | None:intergenic | 40.0% | |
| GACACACCAGATGAAAAATG+TGG | + | chr2_4:7245054-7245073 | Msa0312220:CDS | 40.0% | |
| CTTTATGGGAGATATTCACC+AGG | + | chr2_4:7245448-7245467 | Msa0312220:CDS | 40.0% | |
| GAAACACAATTGATCTACGC+TGG | + | chr2_4:7245586-7245605 | Msa0312220:CDS | 40.0% | |
| CAATTGATCTACGCTGGTAT+CGG | + | chr2_4:7245592-7245611 | Msa0312220:CDS | 40.0% | |
| ! | TTTTCTCAATGTCTTGGAGG+AGG | - | chr2_4:7245843-7245862 | None:intergenic | 40.0% |
| ! | GTCAGATGATGTTGCTTCTT+GGG | + | chr2_4:7245989-7246008 | Msa0312220:CDS | 40.0% |
| ACATTGCAGTATGATTGCAC+CGG | - | chr2_4:7246453-7246472 | None:intergenic | 40.0% | |
| GCAATTCGCTTCATGACATA+CGG | - | chr2_4:7246741-7246760 | None:intergenic | 40.0% | |
| ! | AGACTCTGAAGAAGGATTTG+TGG | + | chr2_4:7246806-7246825 | Msa0312220:CDS | 40.0% |
| GAGTTAGACCCTATGATCAA+TGG | - | chr2_4:7246896-7246915 | None:intergenic | 40.0% | |
| TCAACCAACCAACATTTGGT+TGG | - | chr2_4:7246964-7246983 | None:intergenic | 40.0% | |
| !! | TTGATGGTGTCTCTTCCACT+TGG | + | chr2_4:7244234-7244253 | Msa0312220:CDS | 45.0% |
| !! | TAGTACCTGGTGTCATTGGA+TGG | + | chr2_4:7244289-7244308 | Msa0312220:CDS | 45.0% |
| TGTCATTGGATGGAGCAAAG+AGG | + | chr2_4:7244299-7244318 | Msa0312220:CDS | 45.0% | |
| GTCATTGGATGGAGCAAAGA+GGG | + | chr2_4:7244300-7244319 | Msa0312220:CDS | 45.0% | |
| TTGTTAGTTGAGGAGGGCTA+GGG | - | chr2_4:7244366-7244385 | None:intergenic | 45.0% | |
| TTTGTTAGTTGAGGAGGGCT+AGG | - | chr2_4:7244367-7244386 | None:intergenic | 45.0% | |
| TTGTTACCTCCCCATGTCAA+TGG | + | chr2_4:7244949-7244968 | Msa0312220:CDS | 45.0% | |
| AAGTTACCATTGACATGGGG+AGG | - | chr2_4:7244958-7244977 | None:intergenic | 45.0% | |
| CTGCAACACACATATCCTCA+TGG | - | chr2_4:7245210-7245229 | None:intergenic | 45.0% | |
| CATGAGGATATGTGTGTTGC+AGG | + | chr2_4:7245208-7245227 | Msa0312220:CDS | 45.0% | |
| ATATTTCAGCCGATGCACGT+TGG | + | chr2_4:7245543-7245562 | Msa0312220:intron | 45.0% | |
| GTTGGATTCACCTCAGACAA+AGG | + | chr2_4:7245561-7245580 | Msa0312220:CDS | 45.0% | |
| TGTGTTTCCACCTTTGTCTG+AGG | - | chr2_4:7245574-7245593 | None:intergenic | 45.0% | |
| TTTCTTGGATGCAGGGAATC+TGG | + | chr2_4:7245967-7245986 | Msa0312220:intron | 45.0% | |
| ! | GGTCAGATGATGTTGCTTCT+TGG | + | chr2_4:7245988-7246007 | Msa0312220:CDS | 45.0% |
| TGCTTCTTGGGAACATTGCA+AGG | + | chr2_4:7246001-7246020 | Msa0312220:CDS | 45.0% | |
| GCTTGCAAATGGGGTTATGA+AGG | + | chr2_4:7246185-7246204 | Msa0312220:intron | 45.0% | |
| TCATGGTTCGATCTTCTACC+AGG | - | chr2_4:7246308-7246327 | None:intergenic | 45.0% | |
| AGATCGAACCATGAGACATC+CGG | + | chr2_4:7246314-7246333 | Msa0312220:intron | 45.0% | |
| CATCCGGATCATGACTCAAT+TGG | + | chr2_4:7246330-7246349 | Msa0312220:intron | 45.0% | |
| GTCATGAAGCGAATTGCTCA+AGG | + | chr2_4:7246744-7246763 | Msa0312220:CDS | 45.0% | |
| ATGAAGCGAATTGCTCAAGG+TGG | + | chr2_4:7246747-7246766 | Msa0312220:CDS | 45.0% | |
| CTTCAGAGTCTCCAAACACT+TGG | - | chr2_4:7246797-7246816 | None:intergenic | 45.0% | |
| ! | GTGTTTGGAGACTCTGAAGA+AGG | + | chr2_4:7246798-7246817 | Msa0312220:CDS | 45.0% |
| GTTGCTCACCAACCAAATGT+TGG | + | chr2_4:7246953-7246972 | Msa0312220:three_prime_UTR | 45.0% | |
| CTCACCAACCAAATGTTGGT+TGG | + | chr2_4:7246957-7246976 | Msa0312220:three_prime_UTR | 45.0% | |
| !! | TTAATAAATAAGTATTAAAA+TGG | + | chr2_4:7246390-7246409 | Msa0312220:intron | 5.0% |
| GGCGAGATTGGAAGGTTTGA+TGG | + | chr2_4:7244218-7244237 | Msa0312220:CDS | 50.0% | |
| TTGCTCCATCCAATGACACC+AGG | - | chr2_4:7244297-7244316 | None:intergenic | 50.0% | |
| TGAACTGCTTCTGATGCCTC+AGG | - | chr2_4:7244925-7244944 | None:intergenic | 50.0% | |
| GGCCTGATCAAATTAGGCAC+TGG | + | chr2_4:7244995-7245014 | Msa0312220:CDS | 50.0% | |
| AAACATAGGGGACTGCCATG+AGG | + | chr2_4:7245192-7245211 | Msa0312220:intron | 50.0% | |
| GAGGTGAATCCAACGTGCAT+CGG | - | chr2_4:7245555-7245574 | None:intergenic | 50.0% | |
| GGATTCACCTCAGACAAAGG+TGG | + | chr2_4:7245564-7245583 | Msa0312220:CDS | 50.0% | |
| GTCATGATCCGGATGTCTCA+TGG | - | chr2_4:7246325-7246344 | None:intergenic | 50.0% | |
| TGAACCAACCACGGTTGAAC+CGG | + | chr2_4:7246431-7246450 | Msa0312220:intron | 50.0% | |
| !! | TGATTGCACCGGTTCAACCG+TGG | - | chr2_4:7246442-7246461 | None:intergenic | 55.0% |
| !! | TGCACCGGTTCAACCGTGGT+TGG | - | chr2_4:7246438-7246457 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 7244179 | 7247114 | 7244179 | ID=Msa0312220;Name=Msa0312220 |
| chr2_4 | mRNA | 7244179 | 7247114 | 7244179 | ID=Msa0312220-mRNA-1;Parent=Msa0312220;Name=Msa0312220-mRNA-1;_AED=0.14;_eAED=0.14;_QI=37|0.87|0.88|1|0.87|0.88|9|275|290 |
| chr2_4 | exon | 7244179 | 7244350 | 7244179 | ID=Msa0312220-mRNA-1:exon:2751;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7244910 | 7245090 | 7244910 | ID=Msa0312220-mRNA-1:exon:2752;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7245200 | 7245292 | 7245200 | ID=Msa0312220-mRNA-1:exon:2753;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7245414 | 7245469 | 7245414 | ID=Msa0312220-mRNA-1:exon:2754;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7245552 | 7245635 | 7245552 | ID=Msa0312220-mRNA-1:exon:2755;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7245778 | 7245873 | 7245778 | ID=Msa0312220-mRNA-1:exon:2756;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7245981 | 7246045 | 7245981 | ID=Msa0312220-mRNA-1:exon:2757;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7246160 | 7246197 | 7246160 | ID=Msa0312220-mRNA-1:exon:2758;Parent=Msa0312220-mRNA-1 |
| chr2_4 | exon | 7246715 | 7247114 | 7246715 | ID=Msa0312220-mRNA-1:exon:2759;Parent=Msa0312220-mRNA-1 |
| chr2_4 | five_prime_UTR | 7244179 | 7244215 | 7244179 | ID=Msa0312220-mRNA-1:five_prime_utr;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7244216 | 7244350 | 7244216 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7244910 | 7245090 | 7244910 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7245200 | 7245292 | 7245200 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7245414 | 7245469 | 7245414 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7245552 | 7245635 | 7245552 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7245778 | 7245873 | 7245778 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7245981 | 7246045 | 7245981 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7246160 | 7246197 | 7246160 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | CDS | 7246715 | 7246839 | 7246715 | ID=Msa0312220-mRNA-1:cds;Parent=Msa0312220-mRNA-1 |
| chr2_4 | three_prime_UTR | 7246840 | 7247114 | 7246840 | ID=Msa0312220-mRNA-1:three_prime_utr;Parent=Msa0312220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
