Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191460 | XP_003593464.1 | 94.702 | 302 | 6 | 1 | 1 | 292 | 1 | 302 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191460 | sp|Q9SXA6|ENDO1_ARATH | 68.198 | 283 | 74 | 2 | 26 | 292 | 23 | 305 | 7.23e-142 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191460 | G7ILF4 | 94.702 | 302 | 6 | 1 | 1 | 292 | 1 | 302 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074750 | Msa0191460 | 0.812311 | 4.518253e-51 | -8.615850e-47 |
| Msa0191460 | Msa0191560 | 0.995909 | 3.134274e-221 | -8.615850e-47 |
| Msa0191460 | Msa0217670 | 0.808116 | 3.627550e-50 | -8.615850e-47 |
| Msa0191460 | Msa0233560 | 0.984220 | 6.260529e-160 | -8.615850e-47 |
| Msa0191460 | Msa0244970 | 0.810498 | 1.118566e-50 | -8.615850e-47 |
| Msa0191460 | Msa0263920 | 0.820575 | 6.379529e-53 | -8.615850e-47 |
| Msa0191460 | Msa0307860 | 0.809217 | 2.110332e-50 | -8.615850e-47 |
| Msa0191460 | Msa0312220 | 0.890399 | 1.020678e-73 | -8.615850e-47 |
| Msa0191460 | Msa0362890 | 0.820011 | 8.593511e-53 | -8.615850e-47 |
| Msa0191460 | Msa0363060 | 0.819975 | 8.754714e-53 | -8.615850e-47 |
| Msa0191460 | Msa0395980 | 0.821700 | 3.511796e-53 | -8.615850e-47 |
| Msa0191460 | Msa0440510 | 0.821502 | 3.901595e-53 | -8.615850e-47 |
| Msa0191460 | Msa0491000 | 0.802094 | 6.605129e-49 | -8.615850e-47 |
| Msa0191460 | Msa0588090 | 0.803297 | 3.728977e-49 | -8.615850e-47 |
| Msa0191460 | Msa0606080 | 0.835556 | 1.566268e-56 | -8.615850e-47 |
| Msa0191460 | Msa0647030 | 0.812728 | 3.664214e-51 | -8.615850e-47 |
| Msa0191460 | Msa1072520 | 0.858013 | 1.102361e-62 | -8.615850e-47 |
| Msa0191460 | Msa1117910 | 0.859624 | 3.636838e-63 | -8.615850e-47 |
| Msa0191460 | Msa1211340 | 0.800118 | 1.674399e-48 | -8.615850e-47 |
| Msa0191460 | Msa1259640 | 0.806410 | 8.338558e-50 | -8.615850e-47 |
| Msa0191460 | Msa1329790 | 0.807966 | 3.904163e-50 | -8.615850e-47 |
| Msa0191460 | Msa1338370 | 0.824621 | 7.310537e-54 | -8.615850e-47 |
| Msa0191460 | Msa1356610 | 0.809745 | 1.625629e-50 | -8.615850e-47 |
| Msa0191460 | Msa1396020 | 0.853001 | 3.188052e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191460 | MtrunA17_Chr2g0281321 | 95.076 | 264 | 3 | 1 | 39 | 292 | 1 | 264 | 0.0 | 524 |
| Msa0191460 | MtrunA17_Chr4g0048061 | 50.000 | 272 | 118 | 4 | 27 | 281 | 59 | 329 | 5.75e-97 | 288 |
| Msa0191460 | MtrunA17_Chr1g0209691 | 43.816 | 283 | 137 | 5 | 15 | 281 | 7 | 283 | 5.65e-84 | 254 |
| Msa0191460 | MtrunA17_Chr5g0423341 | 44.718 | 284 | 134 | 6 | 16 | 281 | 8 | 286 | 1.09e-82 | 251 |
| Msa0191460 | MtrunA17_Chr5g0423351 | 43.509 | 285 | 140 | 5 | 16 | 283 | 8 | 288 | 8.51e-79 | 241 |
| Msa0191460 | MtrunA17_Chr1g0170511 | 47.059 | 136 | 56 | 2 | 26 | 145 | 21 | 156 | 1.01e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191460 | AT1G11190.1 | 68.198 | 283 | 74 | 2 | 26 | 292 | 23 | 305 | 7.35e-143 | 404 |
| Msa0191460 | AT1G68290.1 | 47.987 | 298 | 131 | 6 | 1 | 282 | 1 | 290 | 4.54e-96 | 285 |
| Msa0191460 | AT4G21585.4 | 48.364 | 275 | 124 | 4 | 25 | 282 | 18 | 291 | 4.41e-94 | 280 |
| Msa0191460 | AT4G21585.1 | 48.364 | 275 | 124 | 4 | 25 | 282 | 18 | 291 | 4.41e-94 | 280 |
| Msa0191460 | AT4G21585.3 | 44.186 | 301 | 124 | 4 | 25 | 282 | 18 | 317 | 6.15e-90 | 271 |
| Msa0191460 | AT4G21585.6 | 43.894 | 303 | 124 | 5 | 25 | 282 | 18 | 319 | 7.26e-88 | 265 |
| Msa0191460 | AT4G21590.1 | 47.584 | 269 | 128 | 4 | 25 | 281 | 18 | 285 | 1.30e-85 | 258 |
| Msa0191460 | AT4G21590.2 | 47.584 | 269 | 128 | 4 | 25 | 281 | 18 | 285 | 1.30e-85 | 258 |
| Msa0191460 | AT4G21600.1 | 45.091 | 275 | 132 | 5 | 25 | 281 | 14 | 287 | 3.02e-81 | 247 |
| Msa0191460 | AT4G21585.2 | 42.041 | 245 | 98 | 4 | 25 | 226 | 18 | 261 | 1.92e-65 | 206 |
| Msa0191460 | AT4G21585.5 | 42.041 | 245 | 98 | 4 | 25 | 226 | 18 | 261 | 1.92e-65 | 206 |
Find 68 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTCTTGTCACACTTTA+TGG | 0.191189 | 2_1:+7083588 | Msa0191460:CDS |
| GTGTATGGCCTGATCAAATT+AGG | 0.272622 | 2_1:+7083144 | Msa0191460:CDS |
| TGTCAATGACCATTGATCAT+AGG | 0.323275 | 2_1:+7085001 | Msa0191460:three_prime_UTR |
| GTCAGATGATGTTGCTTCTT+GGG | 0.326798 | 2_1:+7084109 | Msa0191460:CDS |
| GGTCAGATGATGTTGCTTCT+TGG | 0.337853 | 2_1:+7084108 | Msa0191460:CDS |
| TTATGAATTTGACAAACTTT+TGG | 0.342788 | 2_1:+7085204 | Msa0191460:three_prime_UTR |
| TTTCTTGGATGCAGGGAATC+TGG | 0.348070 | 2_1:+7084087 | Msa0191460:intron |
| GGTAACAAAATTAAACATAT+AGG | 0.349460 | 2_1:+7082338 | None:intergenic |
| TTGTTCTTGTCACACTTTAT+GGG | 0.352767 | 2_1:+7083589 | Msa0191460:CDS |
| AAATCTGGAATGACTCTATC+AGG | 0.358466 | 2_1:+7084332 | Msa0191460:CDS |
| ATCATAGTACCTGGTGTCAT+TGG | 0.368732 | 2_1:+7082450 | Msa0191460:CDS |
| TTGATCAACCAACCAACATT+TGG | 0.385338 | 2_1:-7085082 | None:intergenic |
| CATTAACAATTAAGAAGAAA+TGG | 0.399046 | 2_1:-7085032 | None:intergenic |
| GTAACAAAATTAAACATATA+GGG | 0.399584 | 2_1:+7082339 | None:intergenic |
| ATGATTCTGAACCAAGTGTT+TGG | 0.402598 | 2_1:+7084900 | Msa0191460:CDS |
| ACTTATCAGCACTTTGTGTA+TGG | 0.406470 | 2_1:+7083129 | Msa0191460:CDS |
| GGCACTGGTATAAATATAGA+TGG | 0.408551 | 2_1:+7083165 | Msa0191460:CDS |
| TACCAGTGCCTAATTTGATC+AGG | 0.417409 | 2_1:-7083152 | None:intergenic |
| GCATACAAATAGCTTGCAAA+TGG | 0.430035 | 2_1:+7084294 | Msa0191460:CDS |
| GGTTATGAAGGAGTTAAATC+TGG | 0.439936 | 2_1:+7084317 | Msa0191460:CDS |
| TATTTACACATATGTTGAGT+TGG | 0.440214 | 2_1:-7085163 | None:intergenic |
| GGCGAGATTGAAAGGTTTGA+TGG | 0.451678 | 2_1:+7082383 | Msa0191460:CDS |
| CATACAAATAGCTTGCAAAT+GGG | 0.452050 | 2_1:+7084295 | Msa0191460:CDS |
| GTCAATGACCATTGATCATA+GGG | 0.456849 | 2_1:+7085002 | Msa0191460:three_prime_UTR |
| CTTCAGAGTCTCCAAACACT+TGG | 0.462625 | 2_1:-7084911 | None:intergenic |
| TTGATGGTGTCTCTTCCACT+TGG | 0.484743 | 2_1:+7082399 | Msa0191460:CDS |
| AAACACTTGGTTCAGAATCA+TGG | 0.494857 | 2_1:-7084898 | None:intergenic |
| TGAACTGCTTCTGATGCCTC+AGG | 0.499507 | 2_1:-7083077 | None:intergenic |
| CAGAAGAATACTTTGACTCA+AGG | 0.500412 | 2_1:+7084829 | Msa0191460:intron |
| CAACTTTCTCATTACAAAGA+GGG | 0.507826 | 2_1:+7083408 | Msa0191460:CDS |
| TTGTTACCTCCCTATGTCAA+TGG | 0.511346 | 2_1:+7083104 | Msa0191460:CDS |
| TGCTTCTTGGGAACATTGCA+AGG | 0.512844 | 2_1:+7084121 | Msa0191460:CDS |
| GTGTTTGGAGACTCTGAAGA+AGG | 0.514236 | 2_1:+7084915 | Msa0191460:CDS |
| GCTTGCAAATGGGGTTATGA+AGG | 0.514371 | 2_1:+7084305 | Msa0191460:CDS |
| TCAACCAACCAACATTTGGT+TGG | 0.522893 | 2_1:-7085078 | None:intergenic |
| TTAGATATGGCGAGATTGAA+AGG | 0.527224 | 2_1:+7082375 | Msa0191460:exon |
| GAGTTAGACCCTATGATCAA+TGG | 0.527641 | 2_1:-7085010 | None:intergenic |
| GTCATTGGATGGAGCAAAGA+GGG | 0.537487 | 2_1:+7082465 | Msa0191460:CDS |
| TAGTACCTGGTGTCATTGGA+TGG | 0.539152 | 2_1:+7082454 | Msa0191460:CDS |
| CAATTGATCTACGCTGGTAT+CGG | 0.540639 | 2_1:+7083747 | Msa0191460:CDS |
| GCAATTCGCTTCATGACATA+CGG | 0.542919 | 2_1:-7084855 | None:intergenic |
| CTCACCAACCAAATGTTGGT+TGG | 0.545619 | 2_1:+7085074 | Msa0191460:three_prime_UTR |
| TGATAAGTTACCATTGACAT+AGG | 0.548572 | 2_1:-7083114 | None:intergenic |
| AATGTTGGTTGGTTGATCAA+AGG | 0.563416 | 2_1:+7085085 | Msa0191460:three_prime_UTR |
| TCAACTTTCTCATTACAAAG+AGG | 0.566465 | 2_1:+7083407 | Msa0191460:CDS |
| GGCCTGATCAAATTAGGCAC+TGG | 0.569289 | 2_1:+7083150 | Msa0191460:CDS |
| TCTACTTTCATCATAGTACC+TGG | 0.569857 | 2_1:+7082441 | Msa0191460:CDS |
| GAGGTGAATCCAACGTGCAT+CGG | 0.577676 | 2_1:-7083707 | None:intergenic |
| GATAAGTTACCATTGACATA+GGG | 0.581479 | 2_1:-7083113 | None:intergenic |
| GTTGGATTCACCTCAGACAA+AGG | 0.581712 | 2_1:+7083716 | Msa0191460:CDS |
| TGTGTTTCCACCTTTGTCTG+AGG | 0.582088 | 2_1:-7083726 | None:intergenic |
| GATGACATGTCTAATTGCAC+AGG | 0.594566 | 2_1:+7082494 | Msa0191460:CDS |
| ATACAAATAGCTTGCAAATG+GGG | 0.599056 | 2_1:+7084296 | Msa0191460:CDS |
| CTTTATGGGAGATATTCACC+AGG | 0.613075 | 2_1:+7083603 | Msa0191460:CDS |
| GAAACACAATTGATCTACGC+TGG | 0.614736 | 2_1:+7083741 | Msa0191460:CDS |
| GTCATGAAGCGAATTGCTCA+AGG | 0.617583 | 2_1:+7084861 | Msa0191460:CDS |
| TGACAAGAACAATAATGCCT+CGG | 0.623745 | 2_1:-7083578 | None:intergenic |
| GTTGCTCACCAACCAAATGT+TGG | 0.626369 | 2_1:+7085070 | Msa0191460:three_prime_UTR |
| AAGTTACCATTGACATAGGG+AGG | 0.630506 | 2_1:-7083110 | None:intergenic |
| GGTGTGTCAATGAAATGAAG+TGG | 0.644809 | 2_1:-7083194 | None:intergenic |
| TTGCTCCATCCAATGACACC+AGG | 0.646308 | 2_1:-7082459 | None:intergenic |
| AAGAACAACACAAATCCAAG+TGG | 0.649453 | 2_1:-7082414 | None:intergenic |
| TGTCATTGGATGGAGCAAAG+AGG | 0.656727 | 2_1:+7082464 | Msa0191460:CDS |
| ACAAAATTAAACATATAGGG+TGG | 0.671696 | 2_1:+7082342 | None:intergenic |
| GGATTCACCTCAGACAAAGG+TGG | 0.681668 | 2_1:+7083719 | Msa0191460:CDS |
| ATGAAGCGAATTGCTCAAGG+TGG | 0.685248 | 2_1:+7084864 | Msa0191460:CDS |
| ATATTTCAGCCGATGCACGT+TGG | 0.693369 | 2_1:+7083698 | Msa0191460:intron |
| TATTGCAGATAATATGACCG+AGG | 0.722861 | 2_1:+7083561 | Msa0191460:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATGTTGATTTTATT+TGG | - | chr2_1:7084069-7084088 | None:intergenic | 10.0% |
| !!! | TATTTTTTAGAATTGTCTTT+CGG | - | chr2_1:7082865-7082884 | None:intergenic | 15.0% |
| !! | ATAATTTCTATATGATTGAT+AGG | + | chr2_1:7083043-7083062 | Msa0191460:intron | 15.0% |
| !!! | ATTTGTATATGTAGTTATTT+TGG | + | chr2_1:7083255-7083274 | Msa0191460:intron | 15.0% |
| !! | TAAGTATAAAAATTTCTGAA+AGG | - | chr2_1:7083482-7083501 | None:intergenic | 15.0% |
| !! | TTTATCAAATTAATCTTATC+TGG | - | chr2_1:7083669-7083688 | None:intergenic | 15.0% |
| !!! | TTAAATATTGTTACTTACAT+TGG | - | chr2_1:7083992-7084011 | None:intergenic | 15.0% |
| !!! | AAAATCAACATATTATTTCT+TGG | + | chr2_1:7084072-7084091 | Msa0191460:intron | 15.0% |
| !! | TCTAAACATTAATTAACATT+AGG | - | chr2_1:7084219-7084238 | None:intergenic | 15.0% |
| !! | AATGTTTAGATTTCTTATAT+TGG | + | chr2_1:7084229-7084248 | Msa0191460:intron | 15.0% |
| !! | TTATTTATTTATTTGTCATC+TGG | - | chr2_1:7084501-7084520 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAAAATCATGG+AGG | - | chr2_1:7084755-7084774 | None:intergenic | 15.0% |
| !! | TGCTAAAAAAAAAAAAATCA+TGG | - | chr2_1:7084758-7084777 | None:intergenic | 15.0% |
| !!! | AATTTAAAGAACTAATTTTC+TGG | - | chr2_1:7084981-7085000 | None:intergenic | 15.0% |
| !! | TGGTTGAAAAATATTAGATA+TGG | + | chr2_1:7082362-7082381 | Msa0191460:exon | 20.0% |
| !! | AAAATGATATTTAGTGTGTT+TGG | + | chr2_1:7082580-7082599 | Msa0191460:intron | 20.0% |
| !! | AAGTCAAACATAACTATTTA+TGG | + | chr2_1:7082820-7082839 | Msa0191460:intron | 20.0% |
| !! | TACTTCATGATATTAATTAC+TGG | + | chr2_1:7083505-7083524 | Msa0191460:intron | 20.0% |
| !! | GTCAAGAAAATAATATTAAC+CGG | + | chr2_1:7083535-7083554 | Msa0191460:intron | 20.0% |
| !! | AAACATTAATTAACATTAGG+AGG | - | chr2_1:7084216-7084235 | None:intergenic | 20.0% |
| !!! | TTTCTAAAACATTGCTTTAA+AGG | + | chr2_1:7084672-7084691 | Msa0191460:intron | 20.0% |
| !! | CATTAACAATTAAGAAGAAA+TGG | - | chr2_1:7085035-7085054 | None:intergenic | 20.0% |
| !!! | TTATGAATTTGACAAACTTT+TGG | + | chr2_1:7085204-7085223 | Msa0191460:three_prime_UTR | 20.0% |
| !!! | TACACACTTAGATTTGATTT+TGG | + | chr2_1:7082773-7082792 | Msa0191460:intron | 25.0% |
| !!! | ACACACTTAGATTTGATTTT+GGG | + | chr2_1:7082774-7082793 | Msa0191460:intron | 25.0% |
| ! | CTGGTTATGAATAAGTATAA+GGG | + | chr2_1:7082935-7082954 | Msa0191460:intron | 25.0% |
| !!! | GGGTAATTTTTTTTTGAACA+AGG | + | chr2_1:7082985-7083004 | Msa0191460:intron | 25.0% |
| ! | TAAAAATCTTTAGACAAACC+TGG | - | chr2_1:7083624-7083643 | None:intergenic | 25.0% |
| ! | ATCAAATTAATCTTATCTGG+TGG | - | chr2_1:7083666-7083685 | None:intergenic | 25.0% |
| !! | AAGAATCTAAAATTCGCTTA+AGG | - | chr2_1:7083840-7083859 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTATGCTCATA+AGG | + | chr2_1:7083876-7083895 | Msa0191460:intron | 25.0% |
| !! | TATAGTTTTTCTCAATGTCT+TGG | - | chr2_1:7083969-7083988 | None:intergenic | 25.0% |
| !! | TTTTGAACTAATCATGTAGT+TGG | + | chr2_1:7084261-7084280 | Msa0191460:intron | 25.0% |
| ! | TTTGAACTAATCATGTAGTT+GGG | + | chr2_1:7084262-7084281 | Msa0191460:intron | 25.0% |
| ! | TCAATAAGTGGTTGAATTTA+TGG | - | chr2_1:7084374-7084393 | None:intergenic | 25.0% |
| ! | AAATTCAACCACTTATTGAT+AGG | + | chr2_1:7084375-7084394 | Msa0191460:intron | 25.0% |
| ! | TGGTTTAATCAATACAACTA+CGG | + | chr2_1:7084470-7084489 | Msa0191460:intron | 25.0% |
| ! | AAAATATATTGAACCAACCA+CGG | + | chr2_1:7084542-7084561 | Msa0191460:intron | 25.0% |
| ! | TATTTACACATATGTTGAGT+TGG | - | chr2_1:7085166-7085185 | None:intergenic | 25.0% |
| TTAGTACTGCGTTTGTAAAA+CGG | - | chr2_1:7082728-7082747 | None:intergenic | 30.0% | |
| !! | CTTAGATTTGATTTTGGGAA+TGG | + | chr2_1:7082779-7082798 | Msa0191460:intron | 30.0% |
| GTATCAAATGATTATCATGC+TGG | + | chr2_1:7082916-7082935 | Msa0191460:intron | 30.0% | |
| GCTGGTTATGAATAAGTATA+AGG | + | chr2_1:7082934-7082953 | Msa0191460:intron | 30.0% | |
| AAATCACTGTTACTCTTGAA+GGG | + | chr2_1:7082965-7082984 | Msa0191460:intron | 30.0% | |
| !!! | TTTTTTGAACAAGGTCATGA+AGG | + | chr2_1:7082994-7083013 | Msa0191460:intron | 30.0% |
| ! | TTTTTGAACAAGGTCATGAA+GGG | + | chr2_1:7082995-7083014 | Msa0191460:intron | 30.0% |
| GATAAGTTACCATTGACATA+GGG | - | chr2_1:7083116-7083135 | None:intergenic | 30.0% | |
| TGATAAGTTACCATTGACAT+AGG | - | chr2_1:7083117-7083136 | None:intergenic | 30.0% | |
| ! | TGAAATCCACATTTTTCATC+TGG | - | chr2_1:7083218-7083237 | None:intergenic | 30.0% |
| ! | TTGTTGCTGTTAACAAACAT+AGG | + | chr2_1:7083333-7083352 | Msa0191460:intron | 30.0% |
| ! | TGTTGCTGTTAACAAACATA+GGG | + | chr2_1:7083334-7083353 | Msa0191460:intron | 30.0% |
| TCAACTTTCTCATTACAAAG+AGG | + | chr2_1:7083407-7083426 | Msa0191460:CDS | 30.0% | |
| CAACTTTCTCATTACAAAGA+GGG | + | chr2_1:7083408-7083427 | Msa0191460:CDS | 30.0% | |
| ATTGTTCTTGTCACACTTTA+TGG | + | chr2_1:7083588-7083607 | Msa0191460:CDS | 30.0% | |
| TTGTTCTTGTCACACTTTAT+GGG | + | chr2_1:7083589-7083608 | Msa0191460:CDS | 30.0% | |
| AAAATATGTTACTAGCAGAC+TGG | + | chr2_1:7083799-7083818 | Msa0191460:intron | 30.0% | |
| !!! | TGAACACGTGGATTTTTTAT+TGG | + | chr2_1:7084041-7084060 | Msa0191460:intron | 30.0% |
| ! | ACATATTATTTCTTGGATGC+AGG | + | chr2_1:7084079-7084098 | Msa0191460:intron | 30.0% |
| ! | CATATTATTTCTTGGATGCA+GGG | + | chr2_1:7084080-7084099 | Msa0191460:intron | 30.0% |
| GAGATTGATGAAATTGAAAG+TGG | - | chr2_1:7084187-7084206 | None:intergenic | 30.0% | |
| ! | CATACAAATAGCTTGCAAAT+GGG | + | chr2_1:7084295-7084314 | Msa0191460:CDS | 30.0% |
| ! | ATACAAATAGCTTGCAAATG+GGG | + | chr2_1:7084296-7084315 | Msa0191460:CDS | 30.0% |
| !!! | AAAGCAACGTTTTAAAAACC+TGG | + | chr2_1:7084407-7084426 | Msa0191460:intron | 30.0% |
| GGTTTAATCAATACAACTAC+GGG | + | chr2_1:7084471-7084490 | Msa0191460:intron | 30.0% | |
| !! | ACATAGAATGACTAGTTTGT+CGG | - | chr2_1:7084621-7084640 | None:intergenic | 30.0% |
| AAGCAACAAATTTGTGAAAC+AGG | + | chr2_1:7084728-7084747 | Msa0191460:intron | 30.0% | |
| CATCATTCATTCCATGTTAA+AGG | + | chr2_1:7084782-7084801 | Msa0191460:intron | 30.0% | |
| TGCAACAAAATCCTTTAACA+TGG | - | chr2_1:7084796-7084815 | None:intergenic | 30.0% | |
| TGAGCAACAAAAAATCAAAC+AGG | - | chr2_1:7085058-7085077 | None:intergenic | 30.0% | |
| TTAGATATGGCGAGATTGAA+AGG | + | chr2_1:7082375-7082394 | Msa0191460:exon | 35.0% | |
| AAGAACAACACAAATCCAAG+TGG | - | chr2_1:7082417-7082436 | None:intergenic | 35.0% | |
| TCTACTTTCATCATAGTACC+TGG | + | chr2_1:7082441-7082460 | Msa0191460:CDS | 35.0% | |
| ACTAACAAACATAGTGTGTC+TGG | + | chr2_1:7082543-7082562 | Msa0191460:intron | 35.0% | |
| ACGGAGTTTGATGAAAATCA+AGG | - | chr2_1:7082709-7082728 | None:intergenic | 35.0% | |
| CAAATCACTGTTACTCTTGA+AGG | + | chr2_1:7082964-7082983 | Msa0191460:intron | 35.0% | |
| !! | AAGGTCATGAAGGGTATTAT+TGG | + | chr2_1:7083004-7083023 | Msa0191460:intron | 35.0% |
| !! | CATGAAGGGTATTATTGGAA+TGG | + | chr2_1:7083009-7083028 | Msa0191460:intron | 35.0% |
| ACTTATCAGCACTTTGTGTA+TGG | + | chr2_1:7083129-7083148 | Msa0191460:CDS | 35.0% | |
| !! | GGCACTGGTATAAATATAGA+TGG | + | chr2_1:7083165-7083184 | Msa0191460:CDS | 35.0% |
| ! | GTTGCTGTTAACAAACATAG+GGG | + | chr2_1:7083335-7083354 | Msa0191460:intron | 35.0% |
| AACATCTGATCGTAGATGTA+AGG | + | chr2_1:7083431-7083450 | Msa0191460:intron | 35.0% | |
| ACATCTGATCGTAGATGTAA+GGG | + | chr2_1:7083432-7083451 | Msa0191460:intron | 35.0% | |
| CATATTATCTGCAATATCGC+CGG | - | chr2_1:7083557-7083576 | None:intergenic | 35.0% | |
| TATTGCAGATAATATGACCG+AGG | + | chr2_1:7083561-7083580 | Msa0191460:intron | 35.0% | |
| TGACAAGAACAATAATGCCT+CGG | - | chr2_1:7083581-7083600 | None:intergenic | 35.0% | |
| TTGTTTATGCTCATAAGGTG+TGG | + | chr2_1:7083881-7083900 | Msa0191460:intron | 35.0% | |
| TGTTTATGCTCATAAGGTGT+GGG | + | chr2_1:7083882-7083901 | Msa0191460:intron | 35.0% | |
| ! | AGTTTTTCTCAATGTCTTGG+AGG | - | chr2_1:7083966-7083985 | None:intergenic | 35.0% |
| CCACGTGTTCATTAAAATCT+AGG | - | chr2_1:7084032-7084051 | None:intergenic | 35.0% | |
| !! | CCTAGATTTTAATGAACACG+TGG | + | chr2_1:7084029-7084048 | Msa0191460:intron | 35.0% |
| ! | GCATACAAATAGCTTGCAAA+TGG | + | chr2_1:7084294-7084313 | Msa0191460:CDS | 35.0% |
| GGTTATGAAGGAGTTAAATC+TGG | + | chr2_1:7084317-7084336 | Msa0191460:CDS | 35.0% | |
| ! | AAATCTGGAATGACTCTATC+AGG | + | chr2_1:7084332-7084351 | Msa0191460:CDS | 35.0% |
| AAGAGAAGCCTATCAATAAG+TGG | - | chr2_1:7084386-7084405 | None:intergenic | 35.0% | |
| AAACCAATTGAGTCATGATC+CGG | - | chr2_1:7084456-7084475 | None:intergenic | 35.0% | |
| !! | TTTGTCGGTTAGTTTGATCT+CGG | - | chr2_1:7084606-7084625 | None:intergenic | 35.0% |
| CTAGTCATTCTATGTTCAAC+CGG | + | chr2_1:7084626-7084645 | Msa0191460:intron | 35.0% | |
| ! | CTATGTTCAACCGGTTTAAT+TGG | + | chr2_1:7084635-7084654 | Msa0191460:intron | 35.0% |
| ACTGAACTAGCCAATTAAAC+CGG | - | chr2_1:7084648-7084667 | None:intergenic | 35.0% | |
| ! | AAAGGATTTTGTTGCATGTG+TGG | + | chr2_1:7084800-7084819 | Msa0191460:intron | 35.0% |
| CAGAAGAATACTTTGACTCA+AGG | + | chr2_1:7084829-7084848 | Msa0191460:intron | 35.0% | |
| AAACACTTGGTTCAGAATCA+TGG | - | chr2_1:7084901-7084920 | None:intergenic | 35.0% | |
| ATGATTCTGAACCAAGTGTT+TGG | + | chr2_1:7084900-7084919 | Msa0191460:CDS | 35.0% | |
| TGTCAATGACCATTGATCAT+AGG | + | chr2_1:7085001-7085020 | Msa0191460:three_prime_UTR | 35.0% | |
| GTCAATGACCATTGATCATA+GGG | + | chr2_1:7085002-7085021 | Msa0191460:three_prime_UTR | 35.0% | |
| TTGATCAACCAACCAACATT+TGG | - | chr2_1:7085085-7085104 | None:intergenic | 35.0% | |
| ! | AATGTTGGTTGGTTGATCAA+AGG | + | chr2_1:7085085-7085104 | Msa0191460:three_prime_UTR | 35.0% |
| !! | ATCATAGTACCTGGTGTCAT+TGG | + | chr2_1:7082450-7082469 | Msa0191460:CDS | 40.0% |
| GATGACATGTCTAATTGCAC+AGG | + | chr2_1:7082494-7082513 | Msa0191460:CDS | 40.0% | |
| ! | CTATGTTTGTTAGTCGAGGA+GGG | - | chr2_1:7082537-7082556 | None:intergenic | 40.0% |
| ! | ACTATGTTTGTTAGTCGAGG+AGG | - | chr2_1:7082538-7082557 | None:intergenic | 40.0% |
| ! | CACACTATGTTTGTTAGTCG+AGG | - | chr2_1:7082541-7082560 | None:intergenic | 40.0% |
| ! | TCCTTTTGTGTGTTGCAAAC+GGG | - | chr2_1:7082609-7082628 | None:intergenic | 40.0% |
| ! | GTCCTTTTGTGTGTTGCAAA+CGG | - | chr2_1:7082610-7082629 | None:intergenic | 40.0% |
| AAAAGGACGTATGCACTTTC+CGG | + | chr2_1:7082622-7082641 | Msa0191460:intron | 40.0% | |
| ! | GAATCATGGCAAAAAAGCAC+CGG | - | chr2_1:7082644-7082663 | None:intergenic | 40.0% |
| !! | ATTTGGAGCTTCTGGAATCA+TGG | - | chr2_1:7082658-7082677 | None:intergenic | 40.0% |
| ! | AAGCTAGTATTTGGAGCTTC+TGG | - | chr2_1:7082666-7082685 | None:intergenic | 40.0% |
| GTTGGCTAGAAGCTAGTATT+TGG | - | chr2_1:7082675-7082694 | None:intergenic | 40.0% | |
| ATCAAGGCAAAAACTCACGT+TGG | - | chr2_1:7082693-7082712 | None:intergenic | 40.0% | |
| !!! | ATAGGCACTTTTAAAGCCTG+AGG | + | chr2_1:7083061-7083080 | Msa0191460:intron | 40.0% |
| TTGTTACCTCCCTATGTCAA+TGG | + | chr2_1:7083104-7083123 | Msa0191460:CDS | 40.0% | |
| AAGTTACCATTGACATAGGG+AGG | - | chr2_1:7083113-7083132 | None:intergenic | 40.0% | |
| GTGTATGGCCTGATCAAATT+AGG | + | chr2_1:7083144-7083163 | Msa0191460:CDS | 40.0% | |
| TACCAGTGCCTAATTTGATC+AGG | - | chr2_1:7083155-7083174 | None:intergenic | 40.0% | |
| GGTGTGTCAATGAAATGAAG+TGG | - | chr2_1:7083197-7083216 | None:intergenic | 40.0% | |
| GACACACCAGATGAAAAATG+TGG | + | chr2_1:7083209-7083228 | Msa0191460:CDS | 40.0% | |
| CTTTATGGGAGATATTCACC+AGG | + | chr2_1:7083603-7083622 | Msa0191460:CDS | 40.0% | |
| GAAACACAATTGATCTACGC+TGG | + | chr2_1:7083741-7083760 | Msa0191460:CDS | 40.0% | |
| CAATTGATCTACGCTGGTAT+CGG | + | chr2_1:7083747-7083766 | Msa0191460:CDS | 40.0% | |
| ! | TTTTCTCAATGTCTTGGAGG+AGG | - | chr2_1:7083963-7083982 | None:intergenic | 40.0% |
| ! | GTCAGATGATGTTGCTTCTT+GGG | + | chr2_1:7084109-7084128 | Msa0191460:CDS | 40.0% |
| ACATTGCAGTATGATTGCAC+CGG | - | chr2_1:7084573-7084592 | None:intergenic | 40.0% | |
| GCAATTCGCTTCATGACATA+CGG | - | chr2_1:7084858-7084877 | None:intergenic | 40.0% | |
| GAGTTAGACCCTATGATCAA+TGG | - | chr2_1:7085013-7085032 | None:intergenic | 40.0% | |
| TCAACCAACCAACATTTGGT+TGG | - | chr2_1:7085081-7085100 | None:intergenic | 40.0% | |
| GGCGAGATTGAAAGGTTTGA+TGG | + | chr2_1:7082383-7082402 | Msa0191460:CDS | 45.0% | |
| !! | TTGATGGTGTCTCTTCCACT+TGG | + | chr2_1:7082399-7082418 | Msa0191460:CDS | 45.0% |
| !! | TAGTACCTGGTGTCATTGGA+TGG | + | chr2_1:7082454-7082473 | Msa0191460:CDS | 45.0% |
| TGTCATTGGATGGAGCAAAG+AGG | + | chr2_1:7082464-7082483 | Msa0191460:CDS | 45.0% | |
| GTCATTGGATGGAGCAAAGA+GGG | + | chr2_1:7082465-7082484 | Msa0191460:CDS | 45.0% | |
| TCCCGTTTGCAACACACAAA+AGG | + | chr2_1:7082605-7082624 | Msa0191460:intron | 45.0% | |
| CTGCAACACACATATCCTCA+TGG | - | chr2_1:7083365-7083384 | None:intergenic | 45.0% | |
| CATGAGGATATGTGTGTTGC+AGG | + | chr2_1:7083363-7083382 | Msa0191460:intron | 45.0% | |
| ATATTTCAGCCGATGCACGT+TGG | + | chr2_1:7083698-7083717 | Msa0191460:intron | 45.0% | |
| GTTGGATTCACCTCAGACAA+AGG | + | chr2_1:7083716-7083735 | Msa0191460:CDS | 45.0% | |
| TGTGTTTCCACCTTTGTCTG+AGG | - | chr2_1:7083729-7083748 | None:intergenic | 45.0% | |
| TTTCTTGGATGCAGGGAATC+TGG | + | chr2_1:7084087-7084106 | Msa0191460:intron | 45.0% | |
| ! | GGTCAGATGATGTTGCTTCT+TGG | + | chr2_1:7084108-7084127 | Msa0191460:CDS | 45.0% |
| TGCTTCTTGGGAACATTGCA+AGG | + | chr2_1:7084121-7084140 | Msa0191460:CDS | 45.0% | |
| GCTTGCAAATGGGGTTATGA+AGG | + | chr2_1:7084305-7084324 | Msa0191460:CDS | 45.0% | |
| TCATGGTTCGATCTTCTACC+AGG | - | chr2_1:7084428-7084447 | None:intergenic | 45.0% | |
| AGATCGAACCATGAGACATC+CGG | + | chr2_1:7084434-7084453 | Msa0191460:intron | 45.0% | |
| CATCCGGATCATGACTCAAT+TGG | + | chr2_1:7084450-7084469 | Msa0191460:intron | 45.0% | |
| GTCATGAAGCGAATTGCTCA+AGG | + | chr2_1:7084861-7084880 | Msa0191460:CDS | 45.0% | |
| ATGAAGCGAATTGCTCAAGG+TGG | + | chr2_1:7084864-7084883 | Msa0191460:CDS | 45.0% | |
| CTTCAGAGTCTCCAAACACT+TGG | - | chr2_1:7084914-7084933 | None:intergenic | 45.0% | |
| ! | GTGTTTGGAGACTCTGAAGA+AGG | + | chr2_1:7084915-7084934 | Msa0191460:CDS | 45.0% |
| GTTGCTCACCAACCAAATGT+TGG | + | chr2_1:7085070-7085089 | Msa0191460:three_prime_UTR | 45.0% | |
| CTCACCAACCAAATGTTGGT+TGG | + | chr2_1:7085074-7085093 | Msa0191460:three_prime_UTR | 45.0% | |
| !! | TAAATAAATAAGTATTAAAA+TGG | + | chr2_1:7084510-7084529 | Msa0191460:intron | 5.0% |
| TTGCTCCATCCAATGACACC+AGG | - | chr2_1:7082462-7082481 | None:intergenic | 50.0% | |
| TTGTTAGTCGAGGAGGGCTA+GGG | - | chr2_1:7082531-7082550 | None:intergenic | 50.0% | |
| TTTGTTAGTCGAGGAGGGCT+AGG | - | chr2_1:7082532-7082551 | None:intergenic | 50.0% | |
| TGAACTGCTTCTGATGCCTC+AGG | - | chr2_1:7083080-7083099 | None:intergenic | 50.0% | |
| GGCCTGATCAAATTAGGCAC+TGG | + | chr2_1:7083150-7083169 | Msa0191460:CDS | 50.0% | |
| AAACATAGGGGACTGCCATG+AGG | + | chr2_1:7083347-7083366 | Msa0191460:intron | 50.0% | |
| GAGGTGAATCCAACGTGCAT+CGG | - | chr2_1:7083710-7083729 | None:intergenic | 50.0% | |
| GGATTCACCTCAGACAAAGG+TGG | + | chr2_1:7083719-7083738 | Msa0191460:CDS | 50.0% | |
| GTCATGATCCGGATGTCTCA+TGG | - | chr2_1:7084445-7084464 | None:intergenic | 50.0% | |
| TGAACCAACCACGGTTGAAC+CGG | + | chr2_1:7084551-7084570 | Msa0191460:intron | 50.0% | |
| !! | TGATTGCACCGGTTCAACCG+TGG | - | chr2_1:7084562-7084581 | None:intergenic | 55.0% |
| !! | TGCACCGGTTCAACCGTGGT+TGG | - | chr2_1:7084558-7084577 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7082344 | 7085231 | 7082344 | ID=Msa0191460;Name=Msa0191460 |
| chr2_1 | mRNA | 7082344 | 7085231 | 7082344 | ID=Msa0191460-mRNA-1;Parent=Msa0191460;Name=Msa0191460-mRNA-1;_AED=0.14;_eAED=0.14;_QI=37|0.87|0.88|1|1|1|9|275|292 |
| chr2_1 | exon | 7082344 | 7082515 | 7082344 | ID=Msa0191460-mRNA-1:exon:3197;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7083065 | 7083245 | 7083065 | ID=Msa0191460-mRNA-1:exon:3198;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7083385 | 7083447 | 7083385 | ID=Msa0191460-mRNA-1:exon:3199;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7083569 | 7083624 | 7083569 | ID=Msa0191460-mRNA-1:exon:3200;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7083707 | 7083790 | 7083707 | ID=Msa0191460-mRNA-1:exon:3201;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7083898 | 7083993 | 7083898 | ID=Msa0191460-mRNA-1:exon:3202;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7084101 | 7084165 | 7084101 | ID=Msa0191460-mRNA-1:exon:3203;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7084280 | 7084353 | 7084280 | ID=Msa0191460-mRNA-1:exon:3204;Parent=Msa0191460-mRNA-1 |
| chr2_1 | exon | 7084832 | 7085231 | 7084832 | ID=Msa0191460-mRNA-1:exon:3205;Parent=Msa0191460-mRNA-1 |
| chr2_1 | five_prime_UTR | 7082344 | 7082380 | 7082344 | ID=Msa0191460-mRNA-1:five_prime_utr;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7082381 | 7082515 | 7082381 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7083065 | 7083245 | 7083065 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7083385 | 7083447 | 7083385 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7083569 | 7083624 | 7083569 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7083707 | 7083790 | 7083707 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7083898 | 7083993 | 7083898 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7084101 | 7084165 | 7084101 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7084280 | 7084353 | 7084280 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | CDS | 7084832 | 7084956 | 7084832 | ID=Msa0191460-mRNA-1:cds;Parent=Msa0191460-mRNA-1 |
| chr2_1 | three_prime_UTR | 7084957 | 7085231 | 7084957 | ID=Msa0191460-mRNA-1:three_prime_utr;Parent=Msa0191460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
