Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191560 | XP_003593464.1 | 94.702 | 302 | 6 | 1 | 1 | 292 | 1 | 302 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191560 | sp|Q9SXA6|ENDO1_ARATH | 68.198 | 283 | 74 | 2 | 26 | 292 | 23 | 305 | 7.23e-142 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191560 | G7ILF4 | 94.702 | 302 | 6 | 1 | 1 | 292 | 1 | 302 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0191560 | 0.801544 | 8.565954e-49 | -8.615850e-47 |
| Msa0054530 | Msa0191560 | 0.800092 | 1.694774e-48 | -8.615850e-47 |
| Msa0074750 | Msa0191560 | 0.817541 | 3.125899e-52 | -8.615850e-47 |
| Msa0131700 | Msa0191560 | 0.804183 | 2.441510e-49 | -8.615850e-47 |
| Msa0144780 | Msa0191560 | 0.801447 | 8.964581e-49 | -8.615850e-47 |
| Msa0191460 | Msa0191560 | 0.995909 | 3.134274e-221 | -8.615850e-47 |
| Msa0191560 | Msa0217670 | 0.817318 | 3.509130e-52 | -8.615850e-47 |
| Msa0191560 | Msa0233560 | 0.982928 | 2.258428e-156 | -8.615850e-47 |
| Msa0191560 | Msa0244970 | 0.821665 | 3.578270e-53 | -8.615850e-47 |
| Msa0191560 | Msa0263920 | 0.818020 | 2.436539e-52 | -8.615850e-47 |
| Msa0191560 | Msa0307860 | 0.808874 | 2.499673e-50 | -8.615850e-47 |
| Msa0191560 | Msa0312220 | 0.890930 | 6.307443e-74 | -8.615850e-47 |
| Msa0191560 | Msa0321690 | 0.806631 | 7.487783e-50 | -8.615850e-47 |
| Msa0191560 | Msa0362890 | 0.824652 | 7.185786e-54 | -8.615850e-47 |
| Msa0191560 | Msa0363060 | 0.827793 | 1.285703e-54 | -8.615850e-47 |
| Msa0191560 | Msa0395980 | 0.828173 | 1.041269e-54 | -8.615850e-47 |
| Msa0191560 | Msa0416960 | 0.801994 | 6.923339e-49 | -8.615850e-47 |
| Msa0191560 | Msa0431210 | 0.802938 | 4.424118e-49 | -8.615850e-47 |
| Msa0191560 | Msa0440510 | 0.828715 | 7.705160e-55 | -8.615850e-47 |
| Msa0191560 | Msa0491000 | 0.810321 | 1.221439e-50 | -8.615850e-47 |
| Msa0191560 | Msa0531250 | 0.802889 | 4.527407e-49 | -8.615850e-47 |
| Msa0191560 | Msa0588090 | 0.810170 | 1.317086e-50 | -8.615850e-47 |
| Msa0191560 | Msa0606080 | 0.838901 | 2.183855e-57 | -8.615850e-47 |
| Msa0191560 | Msa0628420 | 0.807277 | 5.468951e-50 | -8.615850e-47 |
| Msa0191560 | Msa0647030 | 0.817351 | 3.450195e-52 | -8.615850e-47 |
| Msa0191560 | Msa0697720 | 0.801605 | 8.319878e-49 | -8.615850e-47 |
| Msa0191560 | Msa0789560 | 0.807429 | 5.075730e-50 | -8.615850e-47 |
| Msa0191560 | Msa1072520 | 0.861203 | 1.209619e-63 | -8.615850e-47 |
| Msa0191560 | Msa1117910 | 0.861701 | 8.527825e-64 | -8.615850e-47 |
| Msa0191560 | Msa1208790 | 0.805103 | 1.568963e-49 | -8.615850e-47 |
| Msa0191560 | Msa1211340 | 0.806336 | 8.643238e-50 | -8.615850e-47 |
| Msa0191560 | Msa1259640 | 0.812646 | 3.817984e-51 | -8.615850e-47 |
| Msa0191560 | Msa1329790 | 0.814323 | 1.633433e-51 | -8.615850e-47 |
| Msa0191560 | Msa1338370 | 0.822993 | 1.759389e-53 | -8.615850e-47 |
| Msa0191560 | Msa1356610 | 0.814063 | 1.864462e-51 | -8.615850e-47 |
| Msa0191560 | Msa1396020 | 0.854788 | 9.748944e-62 | -8.615850e-47 |
| Msa0191560 | Msa1435360 | 0.800819 | 1.205237e-48 | -8.615850e-47 |
| Msa0191560 | Msa1443310 | 0.800005 | 1.765652e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191560 | MtrunA17_Chr2g0281321 | 95.076 | 264 | 3 | 1 | 39 | 292 | 1 | 264 | 0.0 | 524 |
| Msa0191560 | MtrunA17_Chr4g0048061 | 50.000 | 272 | 118 | 4 | 27 | 281 | 59 | 329 | 5.75e-97 | 288 |
| Msa0191560 | MtrunA17_Chr1g0209691 | 43.816 | 283 | 137 | 5 | 15 | 281 | 7 | 283 | 5.65e-84 | 254 |
| Msa0191560 | MtrunA17_Chr5g0423341 | 44.718 | 284 | 134 | 6 | 16 | 281 | 8 | 286 | 1.09e-82 | 251 |
| Msa0191560 | MtrunA17_Chr5g0423351 | 43.509 | 285 | 140 | 5 | 16 | 283 | 8 | 288 | 8.51e-79 | 241 |
| Msa0191560 | MtrunA17_Chr1g0170511 | 47.059 | 136 | 56 | 2 | 26 | 145 | 21 | 156 | 1.01e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191560 | AT1G11190.1 | 68.198 | 283 | 74 | 2 | 26 | 292 | 23 | 305 | 7.35e-143 | 404 |
| Msa0191560 | AT1G68290.1 | 47.987 | 298 | 131 | 6 | 1 | 282 | 1 | 290 | 4.54e-96 | 285 |
| Msa0191560 | AT4G21585.4 | 48.364 | 275 | 124 | 4 | 25 | 282 | 18 | 291 | 4.41e-94 | 280 |
| Msa0191560 | AT4G21585.1 | 48.364 | 275 | 124 | 4 | 25 | 282 | 18 | 291 | 4.41e-94 | 280 |
| Msa0191560 | AT4G21585.3 | 44.186 | 301 | 124 | 4 | 25 | 282 | 18 | 317 | 6.15e-90 | 271 |
| Msa0191560 | AT4G21585.6 | 43.894 | 303 | 124 | 5 | 25 | 282 | 18 | 319 | 7.26e-88 | 265 |
| Msa0191560 | AT4G21590.1 | 47.584 | 269 | 128 | 4 | 25 | 281 | 18 | 285 | 1.30e-85 | 258 |
| Msa0191560 | AT4G21590.2 | 47.584 | 269 | 128 | 4 | 25 | 281 | 18 | 285 | 1.30e-85 | 258 |
| Msa0191560 | AT4G21600.1 | 45.091 | 275 | 132 | 5 | 25 | 281 | 14 | 287 | 3.02e-81 | 247 |
| Msa0191560 | AT4G21585.2 | 42.041 | 245 | 98 | 4 | 25 | 226 | 18 | 261 | 1.92e-65 | 206 |
| Msa0191560 | AT4G21585.5 | 42.041 | 245 | 98 | 4 | 25 | 226 | 18 | 261 | 1.92e-65 | 206 |
Find 68 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTCTTGTCACACTTTA+TGG | 0.191189 | 2_1:+7171298 | Msa0191560:CDS |
| GTGTATGGCCTGATCAAATT+AGG | 0.272622 | 2_1:+7170854 | Msa0191560:CDS |
| TGTCAATGACCATTGATCAT+AGG | 0.323275 | 2_1:+7172712 | Msa0191560:three_prime_UTR |
| GTCAGATGATGTTGCTTCTT+GGG | 0.326798 | 2_1:+7171819 | Msa0191560:CDS |
| GGTCAGATGATGTTGCTTCT+TGG | 0.337853 | 2_1:+7171818 | Msa0191560:CDS |
| TTATGAATTTGACAAACTTT+TGG | 0.342788 | 2_1:+7172915 | Msa0191560:three_prime_UTR |
| TTTCTTGGATGCAGGGAATC+TGG | 0.348070 | 2_1:+7171797 | Msa0191560:intron |
| GGTAACAAAATTAAACATAT+AGG | 0.349460 | 2_1:+7170048 | None:intergenic |
| TTGTTCTTGTCACACTTTAT+GGG | 0.352767 | 2_1:+7171299 | Msa0191560:CDS |
| AAATCTGGAATGACTCTATC+AGG | 0.358466 | 2_1:+7172042 | Msa0191560:CDS |
| ATCATAGTACCTGGTGTCAT+TGG | 0.368732 | 2_1:+7170160 | Msa0191560:CDS |
| TTGATCAACCAACCAACATT+TGG | 0.385338 | 2_1:-7172793 | None:intergenic |
| CATTAACAATTAAGAAGAAA+TGG | 0.399046 | 2_1:-7172743 | None:intergenic |
| GTAACAAAATTAAACATATA+GGG | 0.399584 | 2_1:+7170049 | None:intergenic |
| ATGATTCTGAACCAAGTGTT+TGG | 0.402598 | 2_1:+7172611 | Msa0191560:CDS |
| ACTTATCAGCACTTTGTGTA+TGG | 0.406470 | 2_1:+7170839 | Msa0191560:CDS |
| GGCACTGGTATAAATATAGA+TGG | 0.408551 | 2_1:+7170875 | Msa0191560:CDS |
| TACCAGTGCCTAATTTGATC+AGG | 0.417409 | 2_1:-7170862 | None:intergenic |
| GCATACAAATAGCTTGCAAA+TGG | 0.430035 | 2_1:+7172004 | Msa0191560:CDS |
| GGTTATGAAGGAGTTAAATC+TGG | 0.439936 | 2_1:+7172027 | Msa0191560:CDS |
| TATTTACACATATGTTGAGT+TGG | 0.440214 | 2_1:-7172874 | None:intergenic |
| GGCGAGATTGAAAGGTTTGA+TGG | 0.451678 | 2_1:+7170093 | Msa0191560:CDS |
| CATACAAATAGCTTGCAAAT+GGG | 0.452050 | 2_1:+7172005 | Msa0191560:CDS |
| GTCAATGACCATTGATCATA+GGG | 0.456849 | 2_1:+7172713 | Msa0191560:three_prime_UTR |
| CTTCAGAGTCTCCAAACACT+TGG | 0.462625 | 2_1:-7172622 | None:intergenic |
| TTGATGGTGTCTCTTCCACT+TGG | 0.484743 | 2_1:+7170109 | Msa0191560:CDS |
| AAACACTTGGTTCAGAATCA+TGG | 0.494857 | 2_1:-7172609 | None:intergenic |
| TGAACTGCTTCTGATGCCTC+AGG | 0.499507 | 2_1:-7170787 | None:intergenic |
| CAGAAGAATACTTTGACTCA+AGG | 0.500412 | 2_1:+7172540 | Msa0191560:intron |
| CAACTTTCTCATTACAAAGA+GGG | 0.507826 | 2_1:+7171118 | Msa0191560:CDS |
| TTGTTACCTCCCTATGTCAA+TGG | 0.511346 | 2_1:+7170814 | Msa0191560:CDS |
| TGCTTCTTGGGAACATTGCA+AGG | 0.512844 | 2_1:+7171831 | Msa0191560:CDS |
| GTGTTTGGAGACTCTGAAGA+AGG | 0.514236 | 2_1:+7172626 | Msa0191560:CDS |
| GCTTGCAAATGGGGTTATGA+AGG | 0.514371 | 2_1:+7172015 | Msa0191560:CDS |
| TCAACCAACCAACATTTGGT+TGG | 0.522893 | 2_1:-7172789 | None:intergenic |
| TTAGATATGGCGAGATTGAA+AGG | 0.527224 | 2_1:+7170085 | Msa0191560:exon |
| GAGTTAGACCCTATGATCAA+TGG | 0.527641 | 2_1:-7172721 | None:intergenic |
| GTCATTGGATGGAGCAAAGA+GGG | 0.537487 | 2_1:+7170175 | Msa0191560:CDS |
| TAGTACCTGGTGTCATTGGA+TGG | 0.539152 | 2_1:+7170164 | Msa0191560:CDS |
| CAATTGATCTACGCTGGTAT+CGG | 0.540639 | 2_1:+7171457 | Msa0191560:CDS |
| GCAATTCGCTTCATGACATA+CGG | 0.542919 | 2_1:-7172566 | None:intergenic |
| CTCACCAACCAAATGTTGGT+TGG | 0.545619 | 2_1:+7172785 | Msa0191560:three_prime_UTR |
| TGATAAGTTACCATTGACAT+AGG | 0.548572 | 2_1:-7170824 | None:intergenic |
| AATGTTGGTTGGTTGATCAA+AGG | 0.563416 | 2_1:+7172796 | Msa0191560:three_prime_UTR |
| TCAACTTTCTCATTACAAAG+AGG | 0.566465 | 2_1:+7171117 | Msa0191560:CDS |
| GGCCTGATCAAATTAGGCAC+TGG | 0.569289 | 2_1:+7170860 | Msa0191560:CDS |
| TCTACTTTCATCATAGTACC+TGG | 0.569857 | 2_1:+7170151 | Msa0191560:CDS |
| GAGGTGAATCCAACGTGCAT+CGG | 0.577676 | 2_1:-7171417 | None:intergenic |
| GATAAGTTACCATTGACATA+GGG | 0.581479 | 2_1:-7170823 | None:intergenic |
| GTTGGATTCACCTCAGACAA+AGG | 0.581712 | 2_1:+7171426 | Msa0191560:CDS |
| TGTGTTTCCACCTTTGTCTG+AGG | 0.582088 | 2_1:-7171436 | None:intergenic |
| GATGACATGTCTAATTGCAC+AGG | 0.594566 | 2_1:+7170204 | Msa0191560:CDS |
| ATACAAATAGCTTGCAAATG+GGG | 0.599056 | 2_1:+7172006 | Msa0191560:CDS |
| CTTTATGGGAGATATTCACC+AGG | 0.613075 | 2_1:+7171313 | Msa0191560:CDS |
| GAAACACAATTGATCTACGC+TGG | 0.614736 | 2_1:+7171451 | Msa0191560:CDS |
| GTCATGAAGCGAATTGCTCA+AGG | 0.617583 | 2_1:+7172572 | Msa0191560:CDS |
| TGACAAGAACAATAATGCCT+CGG | 0.623745 | 2_1:-7171288 | None:intergenic |
| GTTGCTCACCAACCAAATGT+TGG | 0.626369 | 2_1:+7172781 | Msa0191560:three_prime_UTR |
| AAGTTACCATTGACATAGGG+AGG | 0.630506 | 2_1:-7170820 | None:intergenic |
| GGTGTGTCAATGAAATGAAG+TGG | 0.644809 | 2_1:-7170904 | None:intergenic |
| TTGCTCCATCCAATGACACC+AGG | 0.646308 | 2_1:-7170169 | None:intergenic |
| AAGAACAACACAAATCCAAG+TGG | 0.649453 | 2_1:-7170124 | None:intergenic |
| TGTCATTGGATGGAGCAAAG+AGG | 0.656727 | 2_1:+7170174 | Msa0191560:CDS |
| ACAAAATTAAACATATAGGG+TGG | 0.671696 | 2_1:+7170052 | None:intergenic |
| GGATTCACCTCAGACAAAGG+TGG | 0.681668 | 2_1:+7171429 | Msa0191560:CDS |
| ATGAAGCGAATTGCTCAAGG+TGG | 0.685248 | 2_1:+7172575 | Msa0191560:CDS |
| ATATTTCAGCCGATGCACGT+TGG | 0.693369 | 2_1:+7171408 | Msa0191560:intron |
| TATTGCAGATAATATGACCG+AGG | 0.722861 | 2_1:+7171271 | Msa0191560:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATGTTGATTTTATT+TGG | - | chr2_1:7171779-7171798 | None:intergenic | 10.0% |
| !!! | TATTTTTTAGAATTGTCTTT+CGG | - | chr2_1:7170575-7170594 | None:intergenic | 15.0% |
| !! | ATAATTTCTATATGATTGAT+AGG | + | chr2_1:7170753-7170772 | Msa0191560:intron | 15.0% |
| !!! | ATTTGTATATGTAGTTATTT+TGG | + | chr2_1:7170965-7170984 | Msa0191560:intron | 15.0% |
| !! | TAAGTATAAAAATTTCTGAA+AGG | - | chr2_1:7171192-7171211 | None:intergenic | 15.0% |
| !! | TTTATCAAATTAATCTTATC+TGG | - | chr2_1:7171379-7171398 | None:intergenic | 15.0% |
| !!! | TTAAATATTGTTACTTACAT+TGG | - | chr2_1:7171702-7171721 | None:intergenic | 15.0% |
| !!! | AAAATCAACATATTATTTCT+TGG | + | chr2_1:7171782-7171801 | Msa0191560:intron | 15.0% |
| !! | TCTAAACATTAATTAACATT+AGG | - | chr2_1:7171929-7171948 | None:intergenic | 15.0% |
| !! | AATGTTTAGATTTCTTATAT+TGG | + | chr2_1:7171939-7171958 | Msa0191560:intron | 15.0% |
| !! | TTATTTATTTATTTGTCATC+TGG | - | chr2_1:7172211-7172230 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATCATGG+AGG | - | chr2_1:7172465-7172484 | None:intergenic | 15.0% |
| !! | GCTAAAAAAAAAAAAAATCA+TGG | - | chr2_1:7172468-7172487 | None:intergenic | 15.0% |
| !!! | AATTTAAAGAACTAATTTTC+TGG | - | chr2_1:7172692-7172711 | None:intergenic | 15.0% |
| !! | TGGTTGAAAAATATTAGATA+TGG | + | chr2_1:7170072-7170091 | Msa0191560:exon | 20.0% |
| !! | AAAATGATATTTAGTGTGTT+TGG | + | chr2_1:7170290-7170309 | Msa0191560:intron | 20.0% |
| !! | AAGTCAAACATAACTATTTA+TGG | + | chr2_1:7170530-7170549 | Msa0191560:intron | 20.0% |
| !! | TACTTCATGATATTAATTAC+TGG | + | chr2_1:7171215-7171234 | Msa0191560:intron | 20.0% |
| !! | GTCAAGAAAATAATATTAAC+CGG | + | chr2_1:7171245-7171264 | Msa0191560:intron | 20.0% |
| !! | AAACATTAATTAACATTAGG+AGG | - | chr2_1:7171926-7171945 | None:intergenic | 20.0% |
| !!! | TTTCTAAAACATTGCTTTAA+AGG | + | chr2_1:7172382-7172401 | Msa0191560:intron | 20.0% |
| !! | CATTAACAATTAAGAAGAAA+TGG | - | chr2_1:7172746-7172765 | None:intergenic | 20.0% |
| !!! | TTATGAATTTGACAAACTTT+TGG | + | chr2_1:7172915-7172934 | Msa0191560:three_prime_UTR | 20.0% |
| !!! | TACACACTTAGATTTGATTT+TGG | + | chr2_1:7170483-7170502 | Msa0191560:intron | 25.0% |
| !!! | ACACACTTAGATTTGATTTT+GGG | + | chr2_1:7170484-7170503 | Msa0191560:intron | 25.0% |
| ! | CTGGTTATGAATAAGTATAA+GGG | + | chr2_1:7170645-7170664 | Msa0191560:intron | 25.0% |
| !!! | GGGTAATTTTTTTTTGAACA+AGG | + | chr2_1:7170695-7170714 | Msa0191560:intron | 25.0% |
| ! | TAAAAATCTTTAGACAAACC+TGG | - | chr2_1:7171334-7171353 | None:intergenic | 25.0% |
| ! | ATCAAATTAATCTTATCTGG+TGG | - | chr2_1:7171376-7171395 | None:intergenic | 25.0% |
| !! | AAGAATCTAAAATTCGCTTA+AGG | - | chr2_1:7171550-7171569 | None:intergenic | 25.0% |
| !!! | TTTTCTTGTTTATGCTCATA+AGG | + | chr2_1:7171586-7171605 | Msa0191560:intron | 25.0% |
| !! | TATAGTTTTTCTCAATGTCT+TGG | - | chr2_1:7171679-7171698 | None:intergenic | 25.0% |
| !! | TTTTGAACTAATCATGTAGT+TGG | + | chr2_1:7171971-7171990 | Msa0191560:intron | 25.0% |
| ! | TTTGAACTAATCATGTAGTT+GGG | + | chr2_1:7171972-7171991 | Msa0191560:intron | 25.0% |
| ! | TCAATAAGTGGTTGAATTTA+TGG | - | chr2_1:7172084-7172103 | None:intergenic | 25.0% |
| ! | AAATTCAACCACTTATTGAT+AGG | + | chr2_1:7172085-7172104 | Msa0191560:intron | 25.0% |
| ! | TGGTTTAATCAATACAACTA+CGG | + | chr2_1:7172180-7172199 | Msa0191560:intron | 25.0% |
| ! | AAAATATATTGAACCAACCA+CGG | + | chr2_1:7172252-7172271 | Msa0191560:intron | 25.0% |
| ! | TATTTACACATATGTTGAGT+TGG | - | chr2_1:7172877-7172896 | None:intergenic | 25.0% |
| TTAGTACTGCGTTTGTAAAA+CGG | - | chr2_1:7170438-7170457 | None:intergenic | 30.0% | |
| !! | CTTAGATTTGATTTTGGGAA+TGG | + | chr2_1:7170489-7170508 | Msa0191560:intron | 30.0% |
| GTATCAAATGATTATCATGC+TGG | + | chr2_1:7170626-7170645 | Msa0191560:intron | 30.0% | |
| GCTGGTTATGAATAAGTATA+AGG | + | chr2_1:7170644-7170663 | Msa0191560:intron | 30.0% | |
| AAATCACTGTTACTCTTGAA+GGG | + | chr2_1:7170675-7170694 | Msa0191560:intron | 30.0% | |
| !!! | TTTTTTGAACAAGGTCATGA+AGG | + | chr2_1:7170704-7170723 | Msa0191560:intron | 30.0% |
| ! | TTTTTGAACAAGGTCATGAA+GGG | + | chr2_1:7170705-7170724 | Msa0191560:intron | 30.0% |
| GATAAGTTACCATTGACATA+GGG | - | chr2_1:7170826-7170845 | None:intergenic | 30.0% | |
| TGATAAGTTACCATTGACAT+AGG | - | chr2_1:7170827-7170846 | None:intergenic | 30.0% | |
| ! | TGAAATCCACATTTTTCATC+TGG | - | chr2_1:7170928-7170947 | None:intergenic | 30.0% |
| ! | TTGTTGCTGTTAACAAACAT+AGG | + | chr2_1:7171043-7171062 | Msa0191560:intron | 30.0% |
| ! | TGTTGCTGTTAACAAACATA+GGG | + | chr2_1:7171044-7171063 | Msa0191560:intron | 30.0% |
| TCAACTTTCTCATTACAAAG+AGG | + | chr2_1:7171117-7171136 | Msa0191560:CDS | 30.0% | |
| CAACTTTCTCATTACAAAGA+GGG | + | chr2_1:7171118-7171137 | Msa0191560:CDS | 30.0% | |
| ATTGTTCTTGTCACACTTTA+TGG | + | chr2_1:7171298-7171317 | Msa0191560:CDS | 30.0% | |
| TTGTTCTTGTCACACTTTAT+GGG | + | chr2_1:7171299-7171318 | Msa0191560:CDS | 30.0% | |
| AAAATATGTTACTAGCAGAC+TGG | + | chr2_1:7171509-7171528 | Msa0191560:intron | 30.0% | |
| !!! | TGAACACGTGGATTTTTTAT+TGG | + | chr2_1:7171751-7171770 | Msa0191560:intron | 30.0% |
| ! | ACATATTATTTCTTGGATGC+AGG | + | chr2_1:7171789-7171808 | Msa0191560:intron | 30.0% |
| ! | CATATTATTTCTTGGATGCA+GGG | + | chr2_1:7171790-7171809 | Msa0191560:intron | 30.0% |
| GAGATTGATGAAATTGAAAG+TGG | - | chr2_1:7171897-7171916 | None:intergenic | 30.0% | |
| ! | CATACAAATAGCTTGCAAAT+GGG | + | chr2_1:7172005-7172024 | Msa0191560:CDS | 30.0% |
| ! | ATACAAATAGCTTGCAAATG+GGG | + | chr2_1:7172006-7172025 | Msa0191560:CDS | 30.0% |
| !!! | AAAGCAACGTTTTAAAAACC+TGG | + | chr2_1:7172117-7172136 | Msa0191560:intron | 30.0% |
| GGTTTAATCAATACAACTAC+GGG | + | chr2_1:7172181-7172200 | Msa0191560:intron | 30.0% | |
| !! | ACATAGAATGACTAGTTTGT+CGG | - | chr2_1:7172331-7172350 | None:intergenic | 30.0% |
| AAGCAACAAATTTGTGAAAC+AGG | + | chr2_1:7172438-7172457 | Msa0191560:intron | 30.0% | |
| CATCATTCATTCCATGTTAA+AGG | + | chr2_1:7172493-7172512 | Msa0191560:intron | 30.0% | |
| TGCAACAAAATCCTTTAACA+TGG | - | chr2_1:7172507-7172526 | None:intergenic | 30.0% | |
| TGAGCAACAAAAAATCAAAC+AGG | - | chr2_1:7172769-7172788 | None:intergenic | 30.0% | |
| TTAGATATGGCGAGATTGAA+AGG | + | chr2_1:7170085-7170104 | Msa0191560:exon | 35.0% | |
| AAGAACAACACAAATCCAAG+TGG | - | chr2_1:7170127-7170146 | None:intergenic | 35.0% | |
| TCTACTTTCATCATAGTACC+TGG | + | chr2_1:7170151-7170170 | Msa0191560:CDS | 35.0% | |
| ACTAACAAACATAGTGTGTC+TGG | + | chr2_1:7170253-7170272 | Msa0191560:intron | 35.0% | |
| ACGGAGTTTGATGAAAATCA+AGG | - | chr2_1:7170419-7170438 | None:intergenic | 35.0% | |
| CAAATCACTGTTACTCTTGA+AGG | + | chr2_1:7170674-7170693 | Msa0191560:intron | 35.0% | |
| !! | AAGGTCATGAAGGGTATTAT+TGG | + | chr2_1:7170714-7170733 | Msa0191560:intron | 35.0% |
| !! | CATGAAGGGTATTATTGGAA+TGG | + | chr2_1:7170719-7170738 | Msa0191560:intron | 35.0% |
| ACTTATCAGCACTTTGTGTA+TGG | + | chr2_1:7170839-7170858 | Msa0191560:CDS | 35.0% | |
| !! | GGCACTGGTATAAATATAGA+TGG | + | chr2_1:7170875-7170894 | Msa0191560:CDS | 35.0% |
| ! | GTTGCTGTTAACAAACATAG+GGG | + | chr2_1:7171045-7171064 | Msa0191560:intron | 35.0% |
| AACATCTGATCGTAGATGTA+AGG | + | chr2_1:7171141-7171160 | Msa0191560:intron | 35.0% | |
| ACATCTGATCGTAGATGTAA+GGG | + | chr2_1:7171142-7171161 | Msa0191560:intron | 35.0% | |
| CATATTATCTGCAATATCGC+CGG | - | chr2_1:7171267-7171286 | None:intergenic | 35.0% | |
| TATTGCAGATAATATGACCG+AGG | + | chr2_1:7171271-7171290 | Msa0191560:intron | 35.0% | |
| TGACAAGAACAATAATGCCT+CGG | - | chr2_1:7171291-7171310 | None:intergenic | 35.0% | |
| TTGTTTATGCTCATAAGGTG+TGG | + | chr2_1:7171591-7171610 | Msa0191560:intron | 35.0% | |
| TGTTTATGCTCATAAGGTGT+GGG | + | chr2_1:7171592-7171611 | Msa0191560:intron | 35.0% | |
| ! | AGTTTTTCTCAATGTCTTGG+AGG | - | chr2_1:7171676-7171695 | None:intergenic | 35.0% |
| CCACGTGTTCATTAAAATCT+AGG | - | chr2_1:7171742-7171761 | None:intergenic | 35.0% | |
| !! | CCTAGATTTTAATGAACACG+TGG | + | chr2_1:7171739-7171758 | Msa0191560:intron | 35.0% |
| ! | GCATACAAATAGCTTGCAAA+TGG | + | chr2_1:7172004-7172023 | Msa0191560:CDS | 35.0% |
| GGTTATGAAGGAGTTAAATC+TGG | + | chr2_1:7172027-7172046 | Msa0191560:CDS | 35.0% | |
| ! | AAATCTGGAATGACTCTATC+AGG | + | chr2_1:7172042-7172061 | Msa0191560:CDS | 35.0% |
| AAGAGAAGCCTATCAATAAG+TGG | - | chr2_1:7172096-7172115 | None:intergenic | 35.0% | |
| AAACCAATTGAGTCATGATC+CGG | - | chr2_1:7172166-7172185 | None:intergenic | 35.0% | |
| !! | TTTGTCGGTTAGTTTGATCT+CGG | - | chr2_1:7172316-7172335 | None:intergenic | 35.0% |
| CTAGTCATTCTATGTTCAAC+CGG | + | chr2_1:7172336-7172355 | Msa0191560:intron | 35.0% | |
| ! | CTATGTTCAACCGGTTTAAT+TGG | + | chr2_1:7172345-7172364 | Msa0191560:intron | 35.0% |
| ACTGAACTAGCCAATTAAAC+CGG | - | chr2_1:7172358-7172377 | None:intergenic | 35.0% | |
| ! | AAAGGATTTTGTTGCATGTG+TGG | + | chr2_1:7172511-7172530 | Msa0191560:intron | 35.0% |
| CAGAAGAATACTTTGACTCA+AGG | + | chr2_1:7172540-7172559 | Msa0191560:intron | 35.0% | |
| AAACACTTGGTTCAGAATCA+TGG | - | chr2_1:7172612-7172631 | None:intergenic | 35.0% | |
| ATGATTCTGAACCAAGTGTT+TGG | + | chr2_1:7172611-7172630 | Msa0191560:CDS | 35.0% | |
| TGTCAATGACCATTGATCAT+AGG | + | chr2_1:7172712-7172731 | Msa0191560:three_prime_UTR | 35.0% | |
| GTCAATGACCATTGATCATA+GGG | + | chr2_1:7172713-7172732 | Msa0191560:three_prime_UTR | 35.0% | |
| TTGATCAACCAACCAACATT+TGG | - | chr2_1:7172796-7172815 | None:intergenic | 35.0% | |
| ! | AATGTTGGTTGGTTGATCAA+AGG | + | chr2_1:7172796-7172815 | Msa0191560:three_prime_UTR | 35.0% |
| !! | ATCATAGTACCTGGTGTCAT+TGG | + | chr2_1:7170160-7170179 | Msa0191560:CDS | 40.0% |
| GATGACATGTCTAATTGCAC+AGG | + | chr2_1:7170204-7170223 | Msa0191560:CDS | 40.0% | |
| ! | CTATGTTTGTTAGTCGAGGA+GGG | - | chr2_1:7170247-7170266 | None:intergenic | 40.0% |
| ! | ACTATGTTTGTTAGTCGAGG+AGG | - | chr2_1:7170248-7170267 | None:intergenic | 40.0% |
| ! | CACACTATGTTTGTTAGTCG+AGG | - | chr2_1:7170251-7170270 | None:intergenic | 40.0% |
| ! | TCCTTTTGTGTGTTGCAAAC+GGG | - | chr2_1:7170319-7170338 | None:intergenic | 40.0% |
| ! | GTCCTTTTGTGTGTTGCAAA+CGG | - | chr2_1:7170320-7170339 | None:intergenic | 40.0% |
| AAAAGGACGTATGCACTTTC+CGG | + | chr2_1:7170332-7170351 | Msa0191560:intron | 40.0% | |
| ! | GAATCATGGCAAAAAAGCAC+CGG | - | chr2_1:7170354-7170373 | None:intergenic | 40.0% |
| !! | ATTTGGAGCTTCTGGAATCA+TGG | - | chr2_1:7170368-7170387 | None:intergenic | 40.0% |
| ! | AAGCTAGTATTTGGAGCTTC+TGG | - | chr2_1:7170376-7170395 | None:intergenic | 40.0% |
| GTTGGCTAGAAGCTAGTATT+TGG | - | chr2_1:7170385-7170404 | None:intergenic | 40.0% | |
| ATCAAGGCAAAAACTCACGT+TGG | - | chr2_1:7170403-7170422 | None:intergenic | 40.0% | |
| !!! | ATAGGCACTTTTAAAGCCTG+AGG | + | chr2_1:7170771-7170790 | Msa0191560:intron | 40.0% |
| TTGTTACCTCCCTATGTCAA+TGG | + | chr2_1:7170814-7170833 | Msa0191560:CDS | 40.0% | |
| AAGTTACCATTGACATAGGG+AGG | - | chr2_1:7170823-7170842 | None:intergenic | 40.0% | |
| GTGTATGGCCTGATCAAATT+AGG | + | chr2_1:7170854-7170873 | Msa0191560:CDS | 40.0% | |
| TACCAGTGCCTAATTTGATC+AGG | - | chr2_1:7170865-7170884 | None:intergenic | 40.0% | |
| GGTGTGTCAATGAAATGAAG+TGG | - | chr2_1:7170907-7170926 | None:intergenic | 40.0% | |
| GACACACCAGATGAAAAATG+TGG | + | chr2_1:7170919-7170938 | Msa0191560:CDS | 40.0% | |
| CTTTATGGGAGATATTCACC+AGG | + | chr2_1:7171313-7171332 | Msa0191560:CDS | 40.0% | |
| GAAACACAATTGATCTACGC+TGG | + | chr2_1:7171451-7171470 | Msa0191560:CDS | 40.0% | |
| CAATTGATCTACGCTGGTAT+CGG | + | chr2_1:7171457-7171476 | Msa0191560:CDS | 40.0% | |
| ! | TTTTCTCAATGTCTTGGAGG+AGG | - | chr2_1:7171673-7171692 | None:intergenic | 40.0% |
| ! | GTCAGATGATGTTGCTTCTT+GGG | + | chr2_1:7171819-7171838 | Msa0191560:CDS | 40.0% |
| ACATTGCAGTATGATTGCAC+CGG | - | chr2_1:7172283-7172302 | None:intergenic | 40.0% | |
| GCAATTCGCTTCATGACATA+CGG | - | chr2_1:7172569-7172588 | None:intergenic | 40.0% | |
| GAGTTAGACCCTATGATCAA+TGG | - | chr2_1:7172724-7172743 | None:intergenic | 40.0% | |
| TCAACCAACCAACATTTGGT+TGG | - | chr2_1:7172792-7172811 | None:intergenic | 40.0% | |
| GGCGAGATTGAAAGGTTTGA+TGG | + | chr2_1:7170093-7170112 | Msa0191560:CDS | 45.0% | |
| !! | TTGATGGTGTCTCTTCCACT+TGG | + | chr2_1:7170109-7170128 | Msa0191560:CDS | 45.0% |
| !! | TAGTACCTGGTGTCATTGGA+TGG | + | chr2_1:7170164-7170183 | Msa0191560:CDS | 45.0% |
| TGTCATTGGATGGAGCAAAG+AGG | + | chr2_1:7170174-7170193 | Msa0191560:CDS | 45.0% | |
| GTCATTGGATGGAGCAAAGA+GGG | + | chr2_1:7170175-7170194 | Msa0191560:CDS | 45.0% | |
| TCCCGTTTGCAACACACAAA+AGG | + | chr2_1:7170315-7170334 | Msa0191560:intron | 45.0% | |
| CTGCAACACACATATCCTCA+TGG | - | chr2_1:7171075-7171094 | None:intergenic | 45.0% | |
| CATGAGGATATGTGTGTTGC+AGG | + | chr2_1:7171073-7171092 | Msa0191560:intron | 45.0% | |
| ATATTTCAGCCGATGCACGT+TGG | + | chr2_1:7171408-7171427 | Msa0191560:intron | 45.0% | |
| GTTGGATTCACCTCAGACAA+AGG | + | chr2_1:7171426-7171445 | Msa0191560:CDS | 45.0% | |
| TGTGTTTCCACCTTTGTCTG+AGG | - | chr2_1:7171439-7171458 | None:intergenic | 45.0% | |
| TTTCTTGGATGCAGGGAATC+TGG | + | chr2_1:7171797-7171816 | Msa0191560:intron | 45.0% | |
| ! | GGTCAGATGATGTTGCTTCT+TGG | + | chr2_1:7171818-7171837 | Msa0191560:CDS | 45.0% |
| TGCTTCTTGGGAACATTGCA+AGG | + | chr2_1:7171831-7171850 | Msa0191560:CDS | 45.0% | |
| GCTTGCAAATGGGGTTATGA+AGG | + | chr2_1:7172015-7172034 | Msa0191560:CDS | 45.0% | |
| TCATGGTTCGATCTTCTACC+AGG | - | chr2_1:7172138-7172157 | None:intergenic | 45.0% | |
| AGATCGAACCATGAGACATC+CGG | + | chr2_1:7172144-7172163 | Msa0191560:intron | 45.0% | |
| CATCCGGATCATGACTCAAT+TGG | + | chr2_1:7172160-7172179 | Msa0191560:intron | 45.0% | |
| GTCATGAAGCGAATTGCTCA+AGG | + | chr2_1:7172572-7172591 | Msa0191560:CDS | 45.0% | |
| ATGAAGCGAATTGCTCAAGG+TGG | + | chr2_1:7172575-7172594 | Msa0191560:CDS | 45.0% | |
| CTTCAGAGTCTCCAAACACT+TGG | - | chr2_1:7172625-7172644 | None:intergenic | 45.0% | |
| ! | GTGTTTGGAGACTCTGAAGA+AGG | + | chr2_1:7172626-7172645 | Msa0191560:CDS | 45.0% |
| GTTGCTCACCAACCAAATGT+TGG | + | chr2_1:7172781-7172800 | Msa0191560:three_prime_UTR | 45.0% | |
| CTCACCAACCAAATGTTGGT+TGG | + | chr2_1:7172785-7172804 | Msa0191560:three_prime_UTR | 45.0% | |
| !! | TAAATAAATAAGTATTAAAA+TGG | + | chr2_1:7172220-7172239 | Msa0191560:intron | 5.0% |
| TTGCTCCATCCAATGACACC+AGG | - | chr2_1:7170172-7170191 | None:intergenic | 50.0% | |
| TTGTTAGTCGAGGAGGGCTA+GGG | - | chr2_1:7170241-7170260 | None:intergenic | 50.0% | |
| TTTGTTAGTCGAGGAGGGCT+AGG | - | chr2_1:7170242-7170261 | None:intergenic | 50.0% | |
| TGAACTGCTTCTGATGCCTC+AGG | - | chr2_1:7170790-7170809 | None:intergenic | 50.0% | |
| GGCCTGATCAAATTAGGCAC+TGG | + | chr2_1:7170860-7170879 | Msa0191560:CDS | 50.0% | |
| AAACATAGGGGACTGCCATG+AGG | + | chr2_1:7171057-7171076 | Msa0191560:intron | 50.0% | |
| GAGGTGAATCCAACGTGCAT+CGG | - | chr2_1:7171420-7171439 | None:intergenic | 50.0% | |
| GGATTCACCTCAGACAAAGG+TGG | + | chr2_1:7171429-7171448 | Msa0191560:CDS | 50.0% | |
| GTCATGATCCGGATGTCTCA+TGG | - | chr2_1:7172155-7172174 | None:intergenic | 50.0% | |
| TGAACCAACCACGGTTGAAC+CGG | + | chr2_1:7172261-7172280 | Msa0191560:intron | 50.0% | |
| !! | TGATTGCACCGGTTCAACCG+TGG | - | chr2_1:7172272-7172291 | None:intergenic | 55.0% |
| !! | TGCACCGGTTCAACCGTGGT+TGG | - | chr2_1:7172268-7172287 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7170054 | 7172942 | 7170054 | ID=Msa0191560;Name=Msa0191560 |
| chr2_1 | mRNA | 7170054 | 7172942 | 7170054 | ID=Msa0191560-mRNA-1;Parent=Msa0191560;Name=Msa0191560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=37|0.87|0.88|1|1|1|9|275|292 |
| chr2_1 | exon | 7170054 | 7170225 | 7170054 | ID=Msa0191560-mRNA-1:exon:3241;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7170775 | 7170955 | 7170775 | ID=Msa0191560-mRNA-1:exon:3242;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171095 | 7171157 | 7171095 | ID=Msa0191560-mRNA-1:exon:3243;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171279 | 7171334 | 7171279 | ID=Msa0191560-mRNA-1:exon:3244;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171417 | 7171500 | 7171417 | ID=Msa0191560-mRNA-1:exon:3245;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171608 | 7171703 | 7171608 | ID=Msa0191560-mRNA-1:exon:3246;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171811 | 7171875 | 7171811 | ID=Msa0191560-mRNA-1:exon:3247;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7171990 | 7172063 | 7171990 | ID=Msa0191560-mRNA-1:exon:3248;Parent=Msa0191560-mRNA-1 |
| chr2_1 | exon | 7172543 | 7172942 | 7172543 | ID=Msa0191560-mRNA-1:exon:3249;Parent=Msa0191560-mRNA-1 |
| chr2_1 | five_prime_UTR | 7170054 | 7170090 | 7170054 | ID=Msa0191560-mRNA-1:five_prime_utr;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7170091 | 7170225 | 7170091 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7170775 | 7170955 | 7170775 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171095 | 7171157 | 7171095 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171279 | 7171334 | 7171279 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171417 | 7171500 | 7171417 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171608 | 7171703 | 7171608 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171811 | 7171875 | 7171811 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7171990 | 7172063 | 7171990 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | CDS | 7172543 | 7172667 | 7172543 | ID=Msa0191560-mRNA-1:cds;Parent=Msa0191560-mRNA-1 |
| chr2_1 | three_prime_UTR | 7172668 | 7172942 | 7172668 | ID=Msa0191560-mRNA-1:three_prime_utr;Parent=Msa0191560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
