Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244770 | XP_003593866.1 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 7.73e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244770 | G7IP32 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 3.69e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0187920 | Msa0244770 | 0.981859 | 1.258176e-153 | -8.615850e-47 |
| Msa0194530 | Msa0244770 | 0.981665 | 3.804814e-153 | -8.615850e-47 |
| Msa0244770 | Msa0268140 | 0.976751 | 1.984604e-142 | -8.615850e-47 |
| Msa0244770 | Msa0299000 | 0.976468 | 6.958648e-142 | -8.615850e-47 |
| Msa0244770 | Msa0314770 | 0.823138 | 1.627409e-53 | -8.615850e-47 |
| Msa0244770 | Msa1000800 | 0.804654 | 1.946913e-49 | -8.615850e-47 |
| Msa0244770 | Msa1182430 | 0.816818 | 4.544225e-52 | -8.615850e-47 |
| Msa0244770 | Msa1347330 | 0.819160 | 1.343411e-52 | -8.615850e-47 |
| Msa0244770 | Msa1448700 | 0.976755 | 1.951407e-142 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244770 | MtrunA17_Chr2g0285421 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 0.0 | 501 |
| Msa0244770 | MtrunA17_Chr8g0376721 | 65.726 | 248 | 82 | 3 | 1 | 246 | 2 | 248 | 2.54e-118 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATCAGATGTTAGAAAA+TGG | 0.212688 | 2_2:+23534632 | Msa0244770:CDS |
| TAGAAGCATCCATGGAAATA+TGG | 0.347628 | 2_2:+23533361 | Msa0244770:CDS |
| ATGGCAGAAGCAATCTATTA+AGG | 0.348198 | 2_2:+23533993 | Msa0244770:CDS |
| AAAATAGAAGGCATGACTTC+AGG | 0.371700 | 2_2:+23534401 | Msa0244770:CDS |
| AATATACAAACAAAAGGATA+TGG | 0.372931 | 2_2:+23533190 | Msa0244770:exon |
| ACATGAATGCACACAACTAT+TGG | 0.377348 | 2_2:-23534449 | None:intergenic |
| ATTATAGATGATCTTGTTCA+TGG | 0.379410 | 2_2:+23533281 | Msa0244770:CDS |
| TTTCATGTAATCAGATCATA+TGG | 0.381243 | 2_2:+23533962 | Msa0244770:intron |
| TTCAAAGTAGTGTATGTTAG+TGG | 0.388260 | 2_2:+23534578 | Msa0244770:CDS |
| ACCAAGGGTTTCAGTAGTTA+AGG | 0.397101 | 2_2:-23533318 | None:intergenic |
| ATTCTCCAGCATATGCTTCA+AGG | 0.397395 | 2_2:-23534244 | None:intergenic |
| TCATCTATAATCACAATTGT+TGG | 0.398129 | 2_2:-23533269 | None:intergenic |
| ATCATCAGATGTTAGAAAAT+GGG | 0.425313 | 2_2:+23534633 | Msa0244770:CDS |
| TTAATTCTGACCATAGGAAA+TGG | 0.426007 | 2_2:+23534507 | Msa0244770:CDS |
| TCACGCTTTGGGAAAATAGA+AGG | 0.429485 | 2_2:+23534389 | Msa0244770:CDS |
| CGGCGTAAGAAAGGTCATTA+AGG | 0.433721 | 2_2:-23534349 | None:intergenic |
| ACTTCAGGTCTTTGCTTGAA+AGG | 0.470876 | 2_2:+23534416 | Msa0244770:CDS |
| GAGCTAACACGGCGTAAGAA+AGG | 0.484665 | 2_2:-23534358 | None:intergenic |
| AGTTTCCTTGAAGCATATGC+TGG | 0.496553 | 2_2:+23534239 | Msa0244770:CDS |
| ATTAAGAATATACAAACAAA+AGG | 0.502484 | 2_2:+23533184 | Msa0244770:five_prime_UTR |
| TCCTTAACTACTGAAACCCT+TGG | 0.503695 | 2_2:+23533317 | Msa0244770:CDS |
| GTCATCTCTACTATTCGTGC+CGG | 0.513748 | 2_2:-23534327 | None:intergenic |
| TGTAATCAGATCATATGGTA+TGG | 0.530296 | 2_2:+23533967 | Msa0244770:intron |
| AGGAATTTACCATATTTCCA+TGG | 0.534844 | 2_2:-23533370 | None:intergenic |
| AGATGTTAGAAAATGGGAAA+GGG | 0.535212 | 2_2:+23534639 | Msa0244770:CDS |
| AAGGCATCATCCATTTCCTA+TGG | 0.542944 | 2_2:-23534517 | None:intergenic |
| TCTATATTTAGAAGCATCCA+TGG | 0.553025 | 2_2:+23533353 | Msa0244770:CDS |
| CAGATGTTAGAAAATGGGAA+AGG | 0.557087 | 2_2:+23534638 | Msa0244770:CDS |
| ATATTATCTATCAACTCAGC+CGG | 0.573023 | 2_2:+23534308 | Msa0244770:CDS |
| GGATACTTAATTCTGACCAT+AGG | 0.582839 | 2_2:+23534501 | Msa0244770:CDS |
| AGAGCTTTGAACACAACCAA+GGG | 0.600437 | 2_2:-23533333 | None:intergenic |
| AGATCATATGGTATGGAGCA+TGG | 0.601542 | 2_2:+23533974 | Msa0244770:intron |
| AAAGGATATGGCATGTTCTG+TGG | 0.607383 | 2_2:+23533202 | Msa0244770:exon |
| ACAGAAATCAATGTTAACCA+AGG | 0.624182 | 2_2:+23534187 | Msa0244770:intron |
| TAGAGCTTTGAACACAACCA+AGG | 0.633504 | 2_2:-23533334 | None:intergenic |
| GTTAACCAAGGTATCAACCA+TGG | 0.651380 | 2_2:+23534199 | Msa0244770:CDS |
| TATGCTGGAGAATCAAGAGA+TGG | 0.654209 | 2_2:+23534254 | Msa0244770:CDS |
| TGACCTGAAAAGAGCTAACA+CGG | 0.676515 | 2_2:-23534369 | None:intergenic |
| TAGTTGTGTGCATTCATGTG+TGG | 0.691763 | 2_2:+23534453 | Msa0244770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAAATTAAATTGAAAAT+TGG | - | chr2_2:23533414-23533433 | None:intergenic | 10.0% |
| !! | TGTATTAGAATAAATTAAAA+TGG | - | chr2_2:23534148-23534167 | None:intergenic | 10.0% |
| !! | AGTAAAATTAAATTGAAAAT+TGG | - | chr2_2:23533414-23533433 | None:intergenic | 10.0% |
| !! | TGTATTAGAATAAATTAAAA+TGG | - | chr2_2:23534148-23534167 | None:intergenic | 10.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | + | chr2_2:23533184-23533203 | Msa0244770:five_prime_UTR | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | + | chr2_2:23533600-23533619 | Msa0244770:intron | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | - | chr2_2:23534144-23534163 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | - | chr2_2:23534145-23534164 | None:intergenic | 15.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | + | chr2_2:23533184-23533203 | Msa0244770:five_prime_UTR | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | + | chr2_2:23533600-23533619 | Msa0244770:intron | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | - | chr2_2:23534144-23534163 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | - | chr2_2:23534145-23534164 | None:intergenic | 15.0% |
| !! | AATATACAAACAAAAGGATA+TGG | + | chr2_2:23533190-23533209 | Msa0244770:exon | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | + | chr2_2:23533755-23533774 | Msa0244770:intron | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | + | chr2_2:23533764-23533783 | Msa0244770:intron | 20.0% |
| !!! | ACAATTTTTAACTTCAAGTT+AGG | - | chr2_2:23533811-23533830 | None:intergenic | 20.0% |
| !! | AATATACAAACAAAAGGATA+TGG | + | chr2_2:23533190-23533209 | Msa0244770:exon | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | + | chr2_2:23533755-23533774 | Msa0244770:intron | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | + | chr2_2:23533764-23533783 | Msa0244770:intron | 20.0% |
| !!! | ACAATTTTTAACTTCAAGTT+AGG | - | chr2_2:23533811-23533830 | None:intergenic | 20.0% |
| ! | TCATCTATAATCACAATTGT+TGG | - | chr2_2:23533272-23533291 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | + | chr2_2:23533281-23533300 | Msa0244770:CDS | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | - | chr2_2:23533532-23533551 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | + | chr2_2:23533715-23533734 | Msa0244770:intron | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | + | chr2_2:23533962-23533981 | Msa0244770:intron | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | - | chr2_2:23534219-23534238 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | + | chr2_2:23534633-23534652 | Msa0244770:CDS | 25.0% |
| ! | TCATCTATAATCACAATTGT+TGG | - | chr2_2:23533272-23533291 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | + | chr2_2:23533281-23533300 | Msa0244770:CDS | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | - | chr2_2:23533532-23533551 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | + | chr2_2:23533715-23533734 | Msa0244770:intron | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | + | chr2_2:23533962-23533981 | Msa0244770:intron | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | - | chr2_2:23534219-23534238 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | + | chr2_2:23534633-23534652 | Msa0244770:CDS | 25.0% |
| ! | GGCTTTTAACAACAAGAATT+TGG | + | chr2_2:23533223-23533242 | Msa0244770:CDS | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | + | chr2_2:23533353-23533372 | Msa0244770:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | - | chr2_2:23533373-23533392 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | - | chr2_2:23533492-23533511 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | - | chr2_2:23533493-23533512 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | - | chr2_2:23533541-23533560 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | + | chr2_2:23533547-23533566 | Msa0244770:intron | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | + | chr2_2:23533639-23533658 | Msa0244770:intron | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | + | chr2_2:23533967-23533986 | Msa0244770:intron | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | - | chr2_2:23534063-23534082 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | - | chr2_2:23534129-23534148 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | + | chr2_2:23534187-23534206 | Msa0244770:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | + | chr2_2:23534308-23534327 | Msa0244770:CDS | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | + | chr2_2:23534480-23534499 | Msa0244770:CDS | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | + | chr2_2:23534507-23534526 | Msa0244770:CDS | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | - | chr2_2:23534539-23534558 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | + | chr2_2:23534578-23534597 | Msa0244770:CDS | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | + | chr2_2:23534632-23534651 | Msa0244770:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | + | chr2_2:23534639-23534658 | Msa0244770:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | - | chr2_2:23534732-23534751 | None:intergenic | 30.0% | |
| ! | GGCTTTTAACAACAAGAATT+TGG | + | chr2_2:23533223-23533242 | Msa0244770:CDS | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | + | chr2_2:23533353-23533372 | Msa0244770:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | - | chr2_2:23533373-23533392 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | - | chr2_2:23533492-23533511 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | - | chr2_2:23533493-23533512 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | - | chr2_2:23533541-23533560 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | + | chr2_2:23533547-23533566 | Msa0244770:intron | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | + | chr2_2:23533639-23533658 | Msa0244770:intron | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | + | chr2_2:23533967-23533986 | Msa0244770:intron | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | - | chr2_2:23534063-23534082 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | - | chr2_2:23534129-23534148 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | + | chr2_2:23534187-23534206 | Msa0244770:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | + | chr2_2:23534308-23534327 | Msa0244770:CDS | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | + | chr2_2:23534480-23534499 | Msa0244770:CDS | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | + | chr2_2:23534507-23534526 | Msa0244770:CDS | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | - | chr2_2:23534539-23534558 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | + | chr2_2:23534578-23534597 | Msa0244770:CDS | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | + | chr2_2:23534632-23534651 | Msa0244770:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | + | chr2_2:23534639-23534658 | Msa0244770:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | - | chr2_2:23534732-23534751 | None:intergenic | 30.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | + | chr2_2:23533361-23533380 | Msa0244770:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | - | chr2_2:23533393-23533412 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | - | chr2_2:23533709-23533728 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | - | chr2_2:23533915-23533934 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | + | chr2_2:23533993-23534012 | Msa0244770:CDS | 35.0% | |
| ! | TCAGCTGCAAAATTTTCAAC+TGG | + | chr2_2:23534281-23534300 | Msa0244770:CDS | 35.0% |
| ! | AAAATAGAAGGCATGACTTC+AGG | + | chr2_2:23534401-23534420 | Msa0244770:CDS | 35.0% |
| ACATGAATGCACACAACTAT+TGG | - | chr2_2:23534452-23534471 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | + | chr2_2:23534501-23534520 | Msa0244770:CDS | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | + | chr2_2:23534638-23534657 | Msa0244770:CDS | 35.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | + | chr2_2:23533361-23533380 | Msa0244770:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | - | chr2_2:23533393-23533412 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | - | chr2_2:23533709-23533728 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | - | chr2_2:23533915-23533934 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | + | chr2_2:23533993-23534012 | Msa0244770:CDS | 35.0% | |
| ! | TCAGCTGCAAAATTTTCAAC+TGG | + | chr2_2:23534281-23534300 | Msa0244770:CDS | 35.0% |
| ! | AAAATAGAAGGCATGACTTC+AGG | + | chr2_2:23534401-23534420 | Msa0244770:CDS | 35.0% |
| ACATGAATGCACACAACTAT+TGG | - | chr2_2:23534452-23534471 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | + | chr2_2:23534501-23534520 | Msa0244770:CDS | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | + | chr2_2:23534638-23534657 | Msa0244770:CDS | 35.0% | |
| AAAGGATATGGCATGTTCTG+TGG | + | chr2_2:23533202-23533221 | Msa0244770:exon | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | + | chr2_2:23533317-23533336 | Msa0244770:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | - | chr2_2:23533321-23533340 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | - | chr2_2:23533336-23533355 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | - | chr2_2:23533337-23533356 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | + | chr2_2:23533554-23533573 | Msa0244770:intron | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | - | chr2_2:23533675-23533694 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | - | chr2_2:23533842-23533861 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | + | chr2_2:23533974-23533993 | Msa0244770:intron | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | + | chr2_2:23534199-23534218 | Msa0244770:CDS | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | - | chr2_2:23534207-23534226 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | + | chr2_2:23534239-23534258 | Msa0244770:CDS | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | - | chr2_2:23534247-23534266 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr2_2:23534254-23534273 | Msa0244770:CDS | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | - | chr2_2:23534372-23534391 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | + | chr2_2:23534389-23534408 | Msa0244770:CDS | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | + | chr2_2:23534416-23534435 | Msa0244770:CDS | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | + | chr2_2:23534453-23534472 | Msa0244770:CDS | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | - | chr2_2:23534520-23534539 | None:intergenic | 40.0% |
| AAAGGATATGGCATGTTCTG+TGG | + | chr2_2:23533202-23533221 | Msa0244770:exon | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | + | chr2_2:23533317-23533336 | Msa0244770:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | - | chr2_2:23533321-23533340 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | - | chr2_2:23533336-23533355 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | - | chr2_2:23533337-23533356 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | + | chr2_2:23533554-23533573 | Msa0244770:intron | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | - | chr2_2:23533675-23533694 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | - | chr2_2:23533842-23533861 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | + | chr2_2:23533974-23533993 | Msa0244770:intron | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | + | chr2_2:23534199-23534218 | Msa0244770:CDS | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | - | chr2_2:23534207-23534226 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | + | chr2_2:23534239-23534258 | Msa0244770:CDS | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | - | chr2_2:23534247-23534266 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr2_2:23534254-23534273 | Msa0244770:CDS | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | - | chr2_2:23534372-23534391 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | + | chr2_2:23534389-23534408 | Msa0244770:CDS | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | + | chr2_2:23534416-23534435 | Msa0244770:CDS | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | + | chr2_2:23534453-23534472 | Msa0244770:CDS | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | - | chr2_2:23534520-23534539 | None:intergenic | 40.0% |
| CATGAACTACCATGGAGCAA+TGG | - | chr2_2:23533701-23533720 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | + | chr2_2:23533703-23533722 | Msa0244770:intron | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | - | chr2_2:23534330-23534349 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | - | chr2_2:23534352-23534371 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | + | chr2_2:23534378-23534397 | Msa0244770:CDS | 45.0% |
| CATGAACTACCATGGAGCAA+TGG | - | chr2_2:23533701-23533720 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | + | chr2_2:23533703-23533722 | Msa0244770:intron | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | - | chr2_2:23534330-23534349 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | - | chr2_2:23534352-23534371 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | + | chr2_2:23534378-23534397 | Msa0244770:CDS | 45.0% |
| CTTCAGATGCCATTGCTCCA+TGG | + | chr2_2:23533689-23533708 | Msa0244770:intron | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | - | chr2_2:23534361-23534380 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | + | chr2_2:23534366-23534385 | Msa0244770:CDS | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | + | chr2_2:23534377-23534396 | Msa0244770:CDS | 50.0% |
| CTTCAGATGCCATTGCTCCA+TGG | + | chr2_2:23533689-23533708 | Msa0244770:intron | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | - | chr2_2:23534361-23534380 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | + | chr2_2:23534366-23534385 | Msa0244770:CDS | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | + | chr2_2:23534377-23534396 | Msa0244770:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 23533164 | 23534824 | 23533164 | ID=Msa0244770;Name=Msa0244770 |
| chr2_2 | mRNA | 23533164 | 23534824 | 23533164 | ID=Msa0244770-mRNA-1;Parent=Msa0244770;Name=Msa0244770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=45|1|1|1|1|1|3|133|246 |
| chr2_2 | exon | 23533164 | 23533382 | 23533164 | ID=Msa0244770-mRNA-1:exon:8953;Parent=Msa0244770-mRNA-1 |
| chr2_2 | exon | 23533976 | 23534041 | 23533976 | ID=Msa0244770-mRNA-1:exon:8954;Parent=Msa0244770-mRNA-1 |
| chr2_2 | exon | 23534191 | 23534824 | 23534191 | ID=Msa0244770-mRNA-1:exon:8955;Parent=Msa0244770-mRNA-1 |
| chr2_2 | five_prime_UTR | 23533164 | 23533208 | 23533164 | ID=Msa0244770-mRNA-1:five_prime_utr;Parent=Msa0244770-mRNA-1 |
| chr2_2 | CDS | 23533209 | 23533382 | 23533209 | ID=Msa0244770-mRNA-1:cds;Parent=Msa0244770-mRNA-1 |
| chr2_2 | CDS | 23533976 | 23534041 | 23533976 | ID=Msa0244770-mRNA-1:cds;Parent=Msa0244770-mRNA-1 |
| chr2_2 | CDS | 23534191 | 23534691 | 23534191 | ID=Msa0244770-mRNA-1:cds;Parent=Msa0244770-mRNA-1 |
| chr2_2 | three_prime_UTR | 23534692 | 23534824 | 23534692 | ID=Msa0244770-mRNA-1:three_prime_utr;Parent=Msa0244770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
