Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194530 | XP_003593866.1 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 7.73e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194530 | G7IP32 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 3.69e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041840 | Msa0194530 | 0.801313 | 9.549031e-49 | -8.615850e-47 |
| Msa0187920 | Msa0194530 | 0.999513 | 3.685428e-318 | -8.615850e-47 |
| Msa0194530 | Msa0244770 | 0.981665 | 3.804814e-153 | -8.615850e-47 |
| Msa0194530 | Msa0268140 | 0.996078 | 3.756333e-223 | -8.615850e-47 |
| Msa0194530 | Msa0276430 | 0.838675 | 2.497556e-57 | -8.615850e-47 |
| Msa0194530 | Msa0299000 | 0.996839 | 5.730822e-233 | -8.615850e-47 |
| Msa0194530 | Msa0314770 | 0.851676 | 7.600762e-61 | -8.615850e-47 |
| Msa0194530 | Msa0965780 | 0.807360 | 5.250948e-50 | -8.615850e-47 |
| Msa0194530 | Msa1000800 | 0.825381 | 4.836278e-54 | -8.615850e-47 |
| Msa0194530 | Msa1023300 | 0.815435 | 9.257493e-52 | -8.615850e-47 |
| Msa0194530 | Msa1023310 | 0.809856 | 1.538946e-50 | -8.615850e-47 |
| Msa0194530 | Msa1062020 | 0.820869 | 5.461087e-53 | -8.615850e-47 |
| Msa0194530 | Msa1062040 | 0.818011 | 2.448622e-52 | -8.615850e-47 |
| Msa0194530 | Msa1150800 | 0.838828 | 2.280184e-57 | -8.615850e-47 |
| Msa0194530 | Msa1150810 | 0.821265 | 4.425096e-53 | -8.615850e-47 |
| Msa0194530 | Msa1182430 | 0.831707 | 1.432839e-55 | -8.615850e-47 |
| Msa0194530 | Msa1347330 | 0.835369 | 1.746650e-56 | -8.615850e-47 |
| Msa0194530 | Msa1352660 | 0.800931 | 1.143236e-48 | -8.615850e-47 |
| Msa0194530 | Msa1448700 | 0.996233 | 5.499903e-225 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194530 | MtrunA17_Chr2g0285421 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 0.0 | 501 |
| Msa0194530 | MtrunA17_Chr8g0376721 | 65.726 | 248 | 82 | 3 | 1 | 246 | 2 | 248 | 2.54e-118 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATCAGATGTTAGAAAA+TGG | 0.212688 | 2_1:+10735370 | Msa0194530:CDS |
| TAGAAGCATCCATGGAAATA+TGG | 0.347628 | 2_1:+10734100 | Msa0194530:CDS |
| ATGGCAGAAGCAATCTATTA+AGG | 0.348198 | 2_1:+10734731 | Msa0194530:CDS |
| AAAATAGAAGGCATGACTTC+AGG | 0.371700 | 2_1:+10735139 | Msa0194530:CDS |
| AATATACAAACAAAAGGATA+TGG | 0.372931 | 2_1:+10733929 | Msa0194530:exon |
| ACATGAATGCACACAACTAT+TGG | 0.377348 | 2_1:-10735187 | None:intergenic |
| ATTATAGATGATCTTGTTCA+TGG | 0.379410 | 2_1:+10734020 | Msa0194530:CDS |
| TTTCATGTAATCAGATCATA+TGG | 0.381243 | 2_1:+10734700 | Msa0194530:intron |
| TTCAAAGTAGTGTATGTTAG+TGG | 0.388260 | 2_1:+10735316 | Msa0194530:CDS |
| ACCAAGGGTTTCAGTAGTTA+AGG | 0.397101 | 2_1:-10734057 | None:intergenic |
| ATTCTCCAGCATATGCTTCA+AGG | 0.397395 | 2_1:-10734982 | None:intergenic |
| TCATCTATAATCACAATTGT+TGG | 0.398129 | 2_1:-10734008 | None:intergenic |
| ATCATCAGATGTTAGAAAAT+GGG | 0.425313 | 2_1:+10735371 | Msa0194530:CDS |
| TTAATTCTGACCATAGGAAA+TGG | 0.426007 | 2_1:+10735245 | Msa0194530:CDS |
| TCACGCTTTGGGAAAATAGA+AGG | 0.429485 | 2_1:+10735127 | Msa0194530:CDS |
| CGGCGTAAGAAAGGTCATTA+AGG | 0.433721 | 2_1:-10735087 | None:intergenic |
| TCAGCTGCAAAATTCTCAAC+TGG | 0.441332 | 2_1:+10735019 | Msa0194530:CDS |
| ACTTCAGGTCTTTGCTTGAA+AGG | 0.470876 | 2_1:+10735154 | Msa0194530:CDS |
| GAGCTAACACGGCGTAAGAA+AGG | 0.484665 | 2_1:-10735096 | None:intergenic |
| AGTTTCCTTGAAGCATATGC+TGG | 0.496553 | 2_1:+10734977 | Msa0194530:CDS |
| ATTAAGAATATACAAACAAA+AGG | 0.502484 | 2_1:+10733923 | Msa0194530:five_prime_UTR |
| TCCTTAACTACTGAAACCCT+TGG | 0.503695 | 2_1:+10734056 | Msa0194530:CDS |
| GTCATCTCTACTATTCGTGC+CGG | 0.513748 | 2_1:-10735065 | None:intergenic |
| TGTAATCAGATCATATGGTA+TGG | 0.530296 | 2_1:+10734705 | Msa0194530:intron |
| AGGAATTTACCATATTTCCA+TGG | 0.534844 | 2_1:-10734109 | None:intergenic |
| AGATGTTAGAAAATGGGAAA+GGG | 0.535212 | 2_1:+10735377 | Msa0194530:CDS |
| AAGGCATCATCCATTTCCTA+TGG | 0.542944 | 2_1:-10735255 | None:intergenic |
| TCTATATTTAGAAGCATCCA+TGG | 0.553025 | 2_1:+10734092 | Msa0194530:CDS |
| CAGATGTTAGAAAATGGGAA+AGG | 0.557087 | 2_1:+10735376 | Msa0194530:CDS |
| ATATTATCTATCAACTCAGC+CGG | 0.573023 | 2_1:+10735046 | Msa0194530:CDS |
| GGATACTTAATTCTGACCAT+AGG | 0.582839 | 2_1:+10735239 | Msa0194530:CDS |
| AGAGCTTTGAACACAACCAA+GGG | 0.600437 | 2_1:-10734072 | None:intergenic |
| AGATCATATGGTATGGAGCA+TGG | 0.601542 | 2_1:+10734712 | Msa0194530:intron |
| AAAGGATATGGCATGTTCTG+TGG | 0.607383 | 2_1:+10733941 | Msa0194530:exon |
| ACAGAAATCAATGTTAACCA+AGG | 0.624182 | 2_1:+10734925 | Msa0194530:intron |
| TAGAGCTTTGAACACAACCA+AGG | 0.633504 | 2_1:-10734073 | None:intergenic |
| GTTAACCAAGGTATCAACCA+TGG | 0.651380 | 2_1:+10734937 | Msa0194530:CDS |
| TATGCTGGAGAATCAAGAGA+TGG | 0.654209 | 2_1:+10734992 | Msa0194530:CDS |
| TGACCTGAAAAGAGCTAACA+CGG | 0.676515 | 2_1:-10735107 | None:intergenic |
| TAGTTGTGTGCATTCATGTG+TGG | 0.691763 | 2_1:+10735191 | Msa0194530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTAGAATAAATTAAAA+TGG | - | chr2_1:10734886-10734905 | None:intergenic | 10.0% |
| !! | TGTATTAGAATAAATTAAAA+TGG | - | chr2_1:10734886-10734905 | None:intergenic | 10.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | + | chr2_1:10733923-10733942 | Msa0194530:five_prime_UTR | 15.0% |
| !! | AGTAAAATTGAATTGAAAAT+TGG | - | chr2_1:10734153-10734172 | None:intergenic | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | + | chr2_1:10734337-10734356 | Msa0194530:intron | 15.0% |
| !!! | ACAATTTTTAAATTCAAGTT+AGG | - | chr2_1:10734549-10734568 | None:intergenic | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | - | chr2_1:10734882-10734901 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | - | chr2_1:10734883-10734902 | None:intergenic | 15.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | + | chr2_1:10733923-10733942 | Msa0194530:five_prime_UTR | 15.0% |
| !! | AGTAAAATTGAATTGAAAAT+TGG | - | chr2_1:10734153-10734172 | None:intergenic | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | + | chr2_1:10734337-10734356 | Msa0194530:intron | 15.0% |
| !!! | ACAATTTTTAAATTCAAGTT+AGG | - | chr2_1:10734549-10734568 | None:intergenic | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | - | chr2_1:10734882-10734901 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | - | chr2_1:10734883-10734902 | None:intergenic | 15.0% |
| !! | AATATACAAACAAAAGGATA+TGG | + | chr2_1:10733929-10733948 | Msa0194530:exon | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | + | chr2_1:10734493-10734512 | Msa0194530:intron | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | + | chr2_1:10734502-10734521 | Msa0194530:intron | 20.0% |
| !! | AATATACAAACAAAAGGATA+TGG | + | chr2_1:10733929-10733948 | Msa0194530:exon | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | + | chr2_1:10734493-10734512 | Msa0194530:intron | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | + | chr2_1:10734502-10734521 | Msa0194530:intron | 20.0% |
| ! | TCATCTATAATCACAATTGT+TGG | - | chr2_1:10734011-10734030 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | + | chr2_1:10734020-10734039 | Msa0194530:CDS | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | - | chr2_1:10734269-10734288 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | + | chr2_1:10734452-10734471 | Msa0194530:intron | 25.0% |
| !! | TCATGTTTGGATTCAATTTT+GGG | + | chr2_1:10734453-10734472 | Msa0194530:intron | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | + | chr2_1:10734700-10734719 | Msa0194530:intron | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | - | chr2_1:10734957-10734976 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | + | chr2_1:10735371-10735390 | Msa0194530:CDS | 25.0% |
| ! | TCATCTATAATCACAATTGT+TGG | - | chr2_1:10734011-10734030 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | + | chr2_1:10734020-10734039 | Msa0194530:CDS | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | - | chr2_1:10734269-10734288 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | + | chr2_1:10734452-10734471 | Msa0194530:intron | 25.0% |
| !! | TCATGTTTGGATTCAATTTT+GGG | + | chr2_1:10734453-10734472 | Msa0194530:intron | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | + | chr2_1:10734700-10734719 | Msa0194530:intron | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | - | chr2_1:10734957-10734976 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | + | chr2_1:10735371-10735390 | Msa0194530:CDS | 25.0% |
| ! | GGCTTTTAACAACAAGAATT+TGG | + | chr2_1:10733962-10733981 | Msa0194530:CDS | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | + | chr2_1:10734092-10734111 | Msa0194530:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | - | chr2_1:10734112-10734131 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | - | chr2_1:10734229-10734248 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | - | chr2_1:10734230-10734249 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | - | chr2_1:10734278-10734297 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | + | chr2_1:10734284-10734303 | Msa0194530:intron | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | + | chr2_1:10734376-10734395 | Msa0194530:intron | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | + | chr2_1:10734705-10734724 | Msa0194530:intron | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | - | chr2_1:10734801-10734820 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | - | chr2_1:10734867-10734886 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | + | chr2_1:10734925-10734944 | Msa0194530:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | + | chr2_1:10735046-10735065 | Msa0194530:CDS | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | + | chr2_1:10735218-10735237 | Msa0194530:CDS | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | + | chr2_1:10735245-10735264 | Msa0194530:CDS | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | - | chr2_1:10735277-10735296 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | + | chr2_1:10735316-10735335 | Msa0194530:CDS | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | + | chr2_1:10735370-10735389 | Msa0194530:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | + | chr2_1:10735377-10735396 | Msa0194530:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | - | chr2_1:10735471-10735490 | None:intergenic | 30.0% | |
| ! | GGCTTTTAACAACAAGAATT+TGG | + | chr2_1:10733962-10733981 | Msa0194530:CDS | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | + | chr2_1:10734092-10734111 | Msa0194530:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | - | chr2_1:10734112-10734131 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | - | chr2_1:10734229-10734248 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | - | chr2_1:10734230-10734249 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | - | chr2_1:10734278-10734297 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | + | chr2_1:10734284-10734303 | Msa0194530:intron | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | + | chr2_1:10734376-10734395 | Msa0194530:intron | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | + | chr2_1:10734705-10734724 | Msa0194530:intron | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | - | chr2_1:10734801-10734820 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | - | chr2_1:10734867-10734886 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | + | chr2_1:10734925-10734944 | Msa0194530:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | + | chr2_1:10735046-10735065 | Msa0194530:CDS | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | + | chr2_1:10735218-10735237 | Msa0194530:CDS | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | + | chr2_1:10735245-10735264 | Msa0194530:CDS | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | - | chr2_1:10735277-10735296 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | + | chr2_1:10735316-10735335 | Msa0194530:CDS | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | + | chr2_1:10735370-10735389 | Msa0194530:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | + | chr2_1:10735377-10735396 | Msa0194530:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | - | chr2_1:10735471-10735490 | None:intergenic | 30.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | + | chr2_1:10734100-10734119 | Msa0194530:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | - | chr2_1:10734132-10734151 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | - | chr2_1:10734446-10734465 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | - | chr2_1:10734653-10734672 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | + | chr2_1:10734731-10734750 | Msa0194530:CDS | 35.0% | |
| ! | AAAATAGAAGGCATGACTTC+AGG | + | chr2_1:10735139-10735158 | Msa0194530:CDS | 35.0% |
| ACATGAATGCACACAACTAT+TGG | - | chr2_1:10735190-10735209 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | + | chr2_1:10735239-10735258 | Msa0194530:CDS | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | + | chr2_1:10735376-10735395 | Msa0194530:CDS | 35.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | + | chr2_1:10734100-10734119 | Msa0194530:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | - | chr2_1:10734132-10734151 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | - | chr2_1:10734446-10734465 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | - | chr2_1:10734653-10734672 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | + | chr2_1:10734731-10734750 | Msa0194530:CDS | 35.0% | |
| ! | AAAATAGAAGGCATGACTTC+AGG | + | chr2_1:10735139-10735158 | Msa0194530:CDS | 35.0% |
| ACATGAATGCACACAACTAT+TGG | - | chr2_1:10735190-10735209 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | + | chr2_1:10735239-10735258 | Msa0194530:CDS | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | + | chr2_1:10735376-10735395 | Msa0194530:CDS | 35.0% | |
| AAAGGATATGGCATGTTCTG+TGG | + | chr2_1:10733941-10733960 | Msa0194530:exon | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | + | chr2_1:10734056-10734075 | Msa0194530:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | - | chr2_1:10734060-10734079 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | - | chr2_1:10734075-10734094 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | - | chr2_1:10734076-10734095 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | + | chr2_1:10734291-10734310 | Msa0194530:intron | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | - | chr2_1:10734412-10734431 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | - | chr2_1:10734580-10734599 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | + | chr2_1:10734712-10734731 | Msa0194530:intron | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | + | chr2_1:10734937-10734956 | Msa0194530:CDS | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | - | chr2_1:10734945-10734964 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | + | chr2_1:10734977-10734996 | Msa0194530:CDS | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | - | chr2_1:10734985-10735004 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr2_1:10734992-10735011 | Msa0194530:CDS | 40.0% | |
| TCAGCTGCAAAATTCTCAAC+TGG | + | chr2_1:10735019-10735038 | Msa0194530:CDS | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | - | chr2_1:10735110-10735129 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | + | chr2_1:10735127-10735146 | Msa0194530:CDS | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | + | chr2_1:10735154-10735173 | Msa0194530:CDS | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | + | chr2_1:10735191-10735210 | Msa0194530:CDS | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | - | chr2_1:10735258-10735277 | None:intergenic | 40.0% |
| AAAGGATATGGCATGTTCTG+TGG | + | chr2_1:10733941-10733960 | Msa0194530:exon | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | + | chr2_1:10734056-10734075 | Msa0194530:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | - | chr2_1:10734060-10734079 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | - | chr2_1:10734075-10734094 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | - | chr2_1:10734076-10734095 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | + | chr2_1:10734291-10734310 | Msa0194530:intron | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | - | chr2_1:10734412-10734431 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | - | chr2_1:10734580-10734599 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | + | chr2_1:10734712-10734731 | Msa0194530:intron | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | + | chr2_1:10734937-10734956 | Msa0194530:CDS | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | - | chr2_1:10734945-10734964 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | + | chr2_1:10734977-10734996 | Msa0194530:CDS | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | - | chr2_1:10734985-10735004 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | + | chr2_1:10734992-10735011 | Msa0194530:CDS | 40.0% | |
| TCAGCTGCAAAATTCTCAAC+TGG | + | chr2_1:10735019-10735038 | Msa0194530:CDS | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | - | chr2_1:10735110-10735129 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | + | chr2_1:10735127-10735146 | Msa0194530:CDS | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | + | chr2_1:10735154-10735173 | Msa0194530:CDS | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | + | chr2_1:10735191-10735210 | Msa0194530:CDS | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | - | chr2_1:10735258-10735277 | None:intergenic | 40.0% |
| CATGAACTACCATGGAGCAA+TGG | - | chr2_1:10734438-10734457 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | + | chr2_1:10734440-10734459 | Msa0194530:intron | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | - | chr2_1:10735068-10735087 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | - | chr2_1:10735090-10735109 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | + | chr2_1:10735116-10735135 | Msa0194530:CDS | 45.0% |
| CATGAACTACCATGGAGCAA+TGG | - | chr2_1:10734438-10734457 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | + | chr2_1:10734440-10734459 | Msa0194530:intron | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | - | chr2_1:10735068-10735087 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | - | chr2_1:10735090-10735109 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | + | chr2_1:10735116-10735135 | Msa0194530:CDS | 45.0% |
| CTTCAGATGCCATTGCTCCA+TGG | + | chr2_1:10734426-10734445 | Msa0194530:intron | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | - | chr2_1:10735099-10735118 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | + | chr2_1:10735104-10735123 | Msa0194530:CDS | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | + | chr2_1:10735115-10735134 | Msa0194530:CDS | 50.0% |
| CTTCAGATGCCATTGCTCCA+TGG | + | chr2_1:10734426-10734445 | Msa0194530:intron | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | - | chr2_1:10735099-10735118 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | + | chr2_1:10735104-10735123 | Msa0194530:CDS | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | + | chr2_1:10735115-10735134 | Msa0194530:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10733903 | 10735563 | 10733903 | ID=Msa0194530;Name=Msa0194530 |
| chr2_1 | mRNA | 10733903 | 10735563 | 10733903 | ID=Msa0194530-mRNA-1;Parent=Msa0194530;Name=Msa0194530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=45|1|1|1|1|1|3|134|246 |
| chr2_1 | exon | 10733903 | 10734121 | 10733903 | ID=Msa0194530-mRNA-1:exon:4807;Parent=Msa0194530-mRNA-1 |
| chr2_1 | exon | 10734714 | 10734779 | 10734714 | ID=Msa0194530-mRNA-1:exon:4808;Parent=Msa0194530-mRNA-1 |
| chr2_1 | exon | 10734929 | 10735563 | 10734929 | ID=Msa0194530-mRNA-1:exon:4809;Parent=Msa0194530-mRNA-1 |
| chr2_1 | five_prime_UTR | 10733903 | 10733947 | 10733903 | ID=Msa0194530-mRNA-1:five_prime_utr;Parent=Msa0194530-mRNA-1 |
| chr2_1 | CDS | 10733948 | 10734121 | 10733948 | ID=Msa0194530-mRNA-1:cds;Parent=Msa0194530-mRNA-1 |
| chr2_1 | CDS | 10734714 | 10734779 | 10734714 | ID=Msa0194530-mRNA-1:cds;Parent=Msa0194530-mRNA-1 |
| chr2_1 | CDS | 10734929 | 10735429 | 10734929 | ID=Msa0194530-mRNA-1:cds;Parent=Msa0194530-mRNA-1 |
| chr2_1 | three_prime_UTR | 10735430 | 10735563 | 10735430 | ID=Msa0194530-mRNA-1:three_prime_utr;Parent=Msa0194530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
