Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268140 | XP_003593866.1 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 7.73e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268140 | G7IP32 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 3.69e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041840 | Msa0268140 | 0.805462 | 1.319810e-49 | -8.615850e-47 |
| Msa0187920 | Msa0268140 | 0.996330 | 3.573607e-226 | -8.615850e-47 |
| Msa0194530 | Msa0268140 | 0.996078 | 3.756333e-223 | -8.615850e-47 |
| Msa0244770 | Msa0268140 | 0.976751 | 1.984604e-142 | -8.615850e-47 |
| Msa0268140 | Msa0276430 | 0.839559 | 1.474024e-57 | -8.615850e-47 |
| Msa0268140 | Msa0299000 | 0.999317 | 8.365252e-303 | -8.615850e-47 |
| Msa0268140 | Msa0314770 | 0.848134 | 7.436264e-60 | -8.615850e-47 |
| Msa0268140 | Msa0965780 | 0.809478 | 1.855051e-50 | -8.615850e-47 |
| Msa0268140 | Msa1000800 | 0.829312 | 5.524043e-55 | -8.615850e-47 |
| Msa0268140 | Msa1023300 | 0.819918 | 9.024252e-53 | -8.615850e-47 |
| Msa0268140 | Msa1023310 | 0.813855 | 2.071578e-51 | -8.615850e-47 |
| Msa0268140 | Msa1062020 | 0.828413 | 9.117657e-55 | -8.615850e-47 |
| Msa0268140 | Msa1062040 | 0.822150 | 2.762656e-53 | -8.615850e-47 |
| Msa0268140 | Msa1150800 | 0.842587 | 2.360290e-58 | -8.615850e-47 |
| Msa0268140 | Msa1150810 | 0.821702 | 3.507827e-53 | -8.615850e-47 |
| Msa0268140 | Msa1182430 | 0.833966 | 3.936861e-56 | -8.615850e-47 |
| Msa0268140 | Msa1347330 | 0.837176 | 6.066048e-57 | -8.615850e-47 |
| Msa0268140 | Msa1448700 | 0.999582 | 0.000000e+00 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268140 | MtrunA17_Chr2g0285421 | 97.561 | 246 | 6 | 0 | 1 | 246 | 1 | 246 | 0.0 | 501 |
| Msa0268140 | MtrunA17_Chr8g0376721 | 65.726 | 248 | 82 | 3 | 1 | 246 | 2 | 248 | 2.54e-118 | 338 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATCAGATGTTAGAAAA+TGG | 0.212688 | 2_2:-70082758 | Msa0268140:CDS |
| TAGAAGCATCCATGGAAATA+TGG | 0.347628 | 2_2:-70084028 | Msa0268140:intron |
| ATGGCAGAAGCAATCTATTA+AGG | 0.348198 | 2_2:-70083397 | Msa0268140:CDS |
| AAAATAGAAGGCATGACTTC+AGG | 0.371700 | 2_2:-70082989 | Msa0268140:CDS |
| AATATACAAACAAAAGGATA+TGG | 0.372931 | 2_2:-70084199 | Msa0268140:exon |
| ACATGAATGCACACAACTAT+TGG | 0.377348 | 2_2:+70082941 | None:intergenic |
| ATTATAGATGATCTTGTTCA+TGG | 0.379410 | 2_2:-70084108 | Msa0268140:CDS |
| TTTCATGTAATCAGATCATA+TGG | 0.381243 | 2_2:-70083428 | Msa0268140:intron |
| TTCAAAGTAGTGTATGTTAG+TGG | 0.388260 | 2_2:-70082812 | Msa0268140:CDS |
| ACCAAGGGTTTCAGTAGTTA+AGG | 0.397101 | 2_2:+70084071 | None:intergenic |
| ATTCTCCAGCATATGCTTCA+AGG | 0.397395 | 2_2:+70083146 | None:intergenic |
| TCATCTATAATCACAATTGT+TGG | 0.398129 | 2_2:+70084120 | None:intergenic |
| ATCATCAGATGTTAGAAAAT+GGG | 0.425313 | 2_2:-70082757 | Msa0268140:CDS |
| TTAATTCTGACCATAGGAAA+TGG | 0.426007 | 2_2:-70082883 | Msa0268140:CDS |
| TCACGCTTTGGGAAAATAGA+AGG | 0.429485 | 2_2:-70083001 | Msa0268140:CDS |
| CGGCGTAAGAAAGGTCATTA+AGG | 0.433721 | 2_2:+70083041 | None:intergenic |
| TCAGCTGCAAAATTCTCAAC+TGG | 0.441332 | 2_2:-70083109 | Msa0268140:CDS |
| ACTTCAGGTCTTTGCTTGAA+AGG | 0.470876 | 2_2:-70082974 | Msa0268140:CDS |
| GAGCTAACACGGCGTAAGAA+AGG | 0.484665 | 2_2:+70083032 | None:intergenic |
| AGTTTCCTTGAAGCATATGC+TGG | 0.496553 | 2_2:-70083151 | Msa0268140:CDS |
| ATTAAGAATATACAAACAAA+AGG | 0.502484 | 2_2:-70084205 | Msa0268140:five_prime_UTR |
| TCCTTAACTACTGAAACCCT+TGG | 0.503695 | 2_2:-70084072 | Msa0268140:CDS |
| GTCATCTCTACTATTCGTGC+CGG | 0.513748 | 2_2:+70083063 | None:intergenic |
| TGTAATCAGATCATATGGTA+TGG | 0.530296 | 2_2:-70083423 | Msa0268140:intron |
| AGGAATTTACCATATTTCCA+TGG | 0.534844 | 2_2:+70084019 | None:intergenic |
| AGATGTTAGAAAATGGGAAA+GGG | 0.535212 | 2_2:-70082751 | Msa0268140:CDS |
| AAGGCATCATCCATTTCCTA+TGG | 0.542944 | 2_2:+70082873 | None:intergenic |
| TCTATATTTAGAAGCATCCA+TGG | 0.553025 | 2_2:-70084036 | Msa0268140:CDS |
| CAGATGTTAGAAAATGGGAA+AGG | 0.557087 | 2_2:-70082752 | Msa0268140:CDS |
| ATATTATCTATCAACTCAGC+CGG | 0.573023 | 2_2:-70083082 | Msa0268140:CDS |
| GGATACTTAATTCTGACCAT+AGG | 0.582839 | 2_2:-70082889 | Msa0268140:CDS |
| AGAGCTTTGAACACAACCAA+GGG | 0.600437 | 2_2:+70084056 | None:intergenic |
| AGATCATATGGTATGGAGCA+TGG | 0.601542 | 2_2:-70083416 | Msa0268140:CDS |
| AAAGGATATGGCATGTTCTG+TGG | 0.607383 | 2_2:-70084187 | Msa0268140:exon |
| ACAGAAATCAATGTTAACCA+AGG | 0.624182 | 2_2:-70083203 | Msa0268140:intron |
| TAGAGCTTTGAACACAACCA+AGG | 0.633504 | 2_2:+70084055 | None:intergenic |
| GTTAACCAAGGTATCAACCA+TGG | 0.651380 | 2_2:-70083191 | Msa0268140:CDS |
| TATGCTGGAGAATCAAGAGA+TGG | 0.654209 | 2_2:-70083136 | Msa0268140:CDS |
| TGACCTGAAAAGAGCTAACA+CGG | 0.676515 | 2_2:+70083021 | None:intergenic |
| TAGTTGTGTGCATTCATGTG+TGG | 0.691763 | 2_2:-70082937 | Msa0268140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATTAGAATAAATTAAAA+TGG | + | chr2_2:70083570-70083589 | None:intergenic | 10.0% |
| !! | TGTATTAGAATAAATTAAAA+TGG | + | chr2_2:70083570-70083589 | None:intergenic | 10.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | - | chr2_2:70082607-70082626 | Msa0268140:three_prime_UTR | 15.0% |
| !! | AGTAAAATTGAATTGAAAAT+TGG | + | chr2_2:70082837-70082856 | None:intergenic | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | - | chr2_2:70083021-70083040 | Msa0268140:CDS | 15.0% |
| !!! | ACAATTTTTAAATTCAAGTT+AGG | + | chr2_2:70083233-70083252 | None:intergenic | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | + | chr2_2:70083566-70083585 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | + | chr2_2:70083567-70083586 | None:intergenic | 15.0% |
| !! | ATTAAGAATATACAAACAAA+AGG | - | chr2_2:70082607-70082626 | Msa0268140:three_prime_UTR | 15.0% |
| !! | AGTAAAATTGAATTGAAAAT+TGG | + | chr2_2:70082837-70082856 | None:intergenic | 15.0% |
| !! | CATATAATATCATCTTTATT+TGG | - | chr2_2:70083021-70083040 | Msa0268140:CDS | 15.0% |
| !!! | ACAATTTTTAAATTCAAGTT+AGG | + | chr2_2:70083233-70083252 | None:intergenic | 15.0% |
| !! | TTAGAATAAATTAAAATGGA+GGG | + | chr2_2:70083566-70083585 | None:intergenic | 15.0% |
| !! | ATTAGAATAAATTAAAATGG+AGG | + | chr2_2:70083567-70083586 | None:intergenic | 15.0% |
| !! | AATATACAAACAAAAGGATA+TGG | - | chr2_2:70082613-70082632 | Msa0268140:three_prime_UTR | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | - | chr2_2:70083177-70083196 | Msa0268140:CDS | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | - | chr2_2:70083186-70083205 | Msa0268140:CDS | 20.0% |
| !! | AATATACAAACAAAAGGATA+TGG | - | chr2_2:70082613-70082632 | Msa0268140:three_prime_UTR | 20.0% |
| !!! | TGAAGACTAAAAAATGATTT+TGG | - | chr2_2:70083177-70083196 | Msa0268140:CDS | 20.0% |
| !!! | AAAAATGATTTTGGTATGTT+TGG | - | chr2_2:70083186-70083205 | Msa0268140:CDS | 20.0% |
| ! | TCATCTATAATCACAATTGT+TGG | + | chr2_2:70082695-70082714 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | - | chr2_2:70082704-70082723 | Msa0268140:exon | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | + | chr2_2:70082953-70082972 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | - | chr2_2:70083136-70083155 | Msa0268140:CDS | 25.0% |
| !! | TCATGTTTGGATTCAATTTT+GGG | - | chr2_2:70083137-70083156 | Msa0268140:CDS | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | - | chr2_2:70083384-70083403 | Msa0268140:CDS | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | + | chr2_2:70083641-70083660 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | - | chr2_2:70084055-70084074 | Msa0268140:CDS | 25.0% |
| ! | TCATCTATAATCACAATTGT+TGG | + | chr2_2:70082695-70082714 | None:intergenic | 25.0% |
| ! | ATTATAGATGATCTTGTTCA+TGG | - | chr2_2:70082704-70082723 | Msa0268140:exon | 25.0% |
| ! | TAAATTCACAATGGAAGAAA+TGG | + | chr2_2:70082953-70082972 | None:intergenic | 25.0% |
| !! | TTCATGTTTGGATTCAATTT+TGG | - | chr2_2:70083136-70083155 | Msa0268140:CDS | 25.0% |
| !! | TCATGTTTGGATTCAATTTT+GGG | - | chr2_2:70083137-70083156 | Msa0268140:CDS | 25.0% |
| ! | TTTCATGTAATCAGATCATA+TGG | - | chr2_2:70083384-70083403 | Msa0268140:CDS | 25.0% |
| !! | ATGTTCAATTAATTTTGCCA+TGG | + | chr2_2:70083641-70083660 | None:intergenic | 25.0% |
| ! | ATCATCAGATGTTAGAAAAT+GGG | - | chr2_2:70084055-70084074 | Msa0268140:CDS | 25.0% |
| ! | GGCTTTTAACAACAAGAATT+TGG | - | chr2_2:70082646-70082665 | Msa0268140:three_prime_UTR | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | - | chr2_2:70082776-70082795 | Msa0268140:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | + | chr2_2:70082796-70082815 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | + | chr2_2:70082913-70082932 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | + | chr2_2:70082914-70082933 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | + | chr2_2:70082962-70082981 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | - | chr2_2:70082968-70082987 | Msa0268140:CDS | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | - | chr2_2:70083060-70083079 | Msa0268140:CDS | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | - | chr2_2:70083389-70083408 | Msa0268140:CDS | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | + | chr2_2:70083485-70083504 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | + | chr2_2:70083551-70083570 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | - | chr2_2:70083609-70083628 | Msa0268140:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | - | chr2_2:70083730-70083749 | Msa0268140:intron | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | - | chr2_2:70083902-70083921 | Msa0268140:intron | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | - | chr2_2:70083929-70083948 | Msa0268140:intron | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | + | chr2_2:70083961-70083980 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | - | chr2_2:70084000-70084019 | Msa0268140:intron | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | - | chr2_2:70084054-70084073 | Msa0268140:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | - | chr2_2:70084061-70084080 | Msa0268140:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | + | chr2_2:70084155-70084174 | None:intergenic | 30.0% | |
| ! | GGCTTTTAACAACAAGAATT+TGG | - | chr2_2:70082646-70082665 | Msa0268140:three_prime_UTR | 30.0% |
| !! | TCTATATTTAGAAGCATCCA+TGG | - | chr2_2:70082776-70082795 | Msa0268140:CDS | 30.0% |
| AGGAATTTACCATATTTCCA+TGG | + | chr2_2:70082796-70082815 | None:intergenic | 30.0% | |
| CAGCAAAGTTTCAAACAAAA+GGG | + | chr2_2:70082913-70082932 | None:intergenic | 30.0% | |
| TCAGCAAAGTTTCAAACAAA+AGG | + | chr2_2:70082914-70082933 | None:intergenic | 30.0% | |
| TTTGCAGCATAAATTCACAA+TGG | + | chr2_2:70082962-70082981 | None:intergenic | 30.0% | |
| ! | ATTTATGCTGCAAATTTGCT+TGG | - | chr2_2:70082968-70082987 | Msa0268140:CDS | 30.0% |
| !! | TCATCAAAAGTTTAGTTTGC+TGG | - | chr2_2:70083060-70083079 | Msa0268140:CDS | 30.0% |
| TGTAATCAGATCATATGGTA+TGG | - | chr2_2:70083389-70083408 | Msa0268140:CDS | 30.0% | |
| ATGCATACAAAACATCTGAA+AGG | + | chr2_2:70083485-70083504 | None:intergenic | 30.0% | |
| ATGGAGGGAAATAATTGATT+TGG | + | chr2_2:70083551-70083570 | None:intergenic | 30.0% | |
| ACAGAAATCAATGTTAACCA+AGG | - | chr2_2:70083609-70083628 | Msa0268140:intron | 30.0% | |
| ATATTATCTATCAACTCAGC+CGG | - | chr2_2:70083730-70083749 | Msa0268140:intron | 30.0% | |
| !! | CTCTTCATTTTTGTTACTCA+TGG | - | chr2_2:70083902-70083921 | Msa0268140:intron | 30.0% |
| TTAATTCTGACCATAGGAAA+TGG | - | chr2_2:70083929-70083948 | Msa0268140:intron | 30.0% | |
| !!! | ATCGCGAATTTTTCAAGATA+AGG | + | chr2_2:70083961-70083980 | None:intergenic | 30.0% |
| TTCAAAGTAGTGTATGTTAG+TGG | - | chr2_2:70084000-70084019 | Msa0268140:intron | 30.0% | |
| CATCATCAGATGTTAGAAAA+TGG | - | chr2_2:70084054-70084073 | Msa0268140:CDS | 30.0% | |
| AGATGTTAGAAAATGGGAAA+GGG | - | chr2_2:70084061-70084080 | Msa0268140:CDS | 30.0% | |
| AGTGAAAAATAACTTAGCAG+AGG | + | chr2_2:70084155-70084174 | None:intergenic | 30.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | - | chr2_2:70082784-70082803 | Msa0268140:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | + | chr2_2:70082816-70082835 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | + | chr2_2:70083130-70083149 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | + | chr2_2:70083337-70083356 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | - | chr2_2:70083415-70083434 | Msa0268140:CDS | 35.0% | |
| ! | AAAATAGAAGGCATGACTTC+AGG | - | chr2_2:70083823-70083842 | Msa0268140:intron | 35.0% |
| ACATGAATGCACACAACTAT+TGG | + | chr2_2:70083874-70083893 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | - | chr2_2:70083923-70083942 | Msa0268140:intron | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | - | chr2_2:70084060-70084079 | Msa0268140:CDS | 35.0% | |
| !! | TAGAAGCATCCATGGAAATA+TGG | - | chr2_2:70082784-70082803 | Msa0268140:CDS | 35.0% |
| GGAAATCAGAGAAAGAAAAC+AGG | + | chr2_2:70082816-70082835 | None:intergenic | 35.0% | |
| AATCCAAACATGAACTACCA+TGG | + | chr2_2:70083130-70083149 | None:intergenic | 35.0% | |
| !! | ACAATGCGTGTTTGTTTCTA+CGG | + | chr2_2:70083337-70083356 | None:intergenic | 35.0% |
| ATGGCAGAAGCAATCTATTA+AGG | - | chr2_2:70083415-70083434 | Msa0268140:CDS | 35.0% | |
| ! | AAAATAGAAGGCATGACTTC+AGG | - | chr2_2:70083823-70083842 | Msa0268140:intron | 35.0% |
| ACATGAATGCACACAACTAT+TGG | + | chr2_2:70083874-70083893 | None:intergenic | 35.0% | |
| GGATACTTAATTCTGACCAT+AGG | - | chr2_2:70083923-70083942 | Msa0268140:intron | 35.0% | |
| CAGATGTTAGAAAATGGGAA+AGG | - | chr2_2:70084060-70084079 | Msa0268140:CDS | 35.0% | |
| AAAGGATATGGCATGTTCTG+TGG | - | chr2_2:70082625-70082644 | Msa0268140:three_prime_UTR | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | - | chr2_2:70082740-70082759 | Msa0268140:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | + | chr2_2:70082744-70082763 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | + | chr2_2:70082759-70082778 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | + | chr2_2:70082760-70082779 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | - | chr2_2:70082975-70082994 | Msa0268140:CDS | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | + | chr2_2:70083096-70083115 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | + | chr2_2:70083264-70083283 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | - | chr2_2:70083396-70083415 | Msa0268140:CDS | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | - | chr2_2:70083621-70083640 | Msa0268140:intron | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | + | chr2_2:70083629-70083648 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | - | chr2_2:70083661-70083680 | Msa0268140:intron | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | + | chr2_2:70083669-70083688 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | - | chr2_2:70083676-70083695 | Msa0268140:intron | 40.0% | |
| TCAGCTGCAAAATTCTCAAC+TGG | - | chr2_2:70083703-70083722 | Msa0268140:intron | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | + | chr2_2:70083794-70083813 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | - | chr2_2:70083811-70083830 | Msa0268140:intron | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | - | chr2_2:70083838-70083857 | Msa0268140:intron | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | - | chr2_2:70083875-70083894 | Msa0268140:intron | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | + | chr2_2:70083942-70083961 | None:intergenic | 40.0% |
| AAAGGATATGGCATGTTCTG+TGG | - | chr2_2:70082625-70082644 | Msa0268140:three_prime_UTR | 40.0% | |
| TCCTTAACTACTGAAACCCT+TGG | - | chr2_2:70082740-70082759 | Msa0268140:CDS | 40.0% | |
| ACCAAGGGTTTCAGTAGTTA+AGG | + | chr2_2:70082744-70082763 | None:intergenic | 40.0% | |
| !! | AGAGCTTTGAACACAACCAA+GGG | + | chr2_2:70082759-70082778 | None:intergenic | 40.0% |
| !! | TAGAGCTTTGAACACAACCA+AGG | + | chr2_2:70082760-70082779 | None:intergenic | 40.0% |
| ! | CTGCAAATTTGCTTGGAAGT+TGG | - | chr2_2:70082975-70082994 | Msa0268140:CDS | 40.0% |
| ! | CTGAAGTTGTCATTTGCTGA+AGG | + | chr2_2:70083096-70083115 | None:intergenic | 40.0% |
| ! | TGTGTAAAGCTCACGTTTTG+AGG | + | chr2_2:70083264-70083283 | None:intergenic | 40.0% |
| AGATCATATGGTATGGAGCA+TGG | - | chr2_2:70083396-70083415 | Msa0268140:CDS | 40.0% | |
| ! | GTTAACCAAGGTATCAACCA+TGG | - | chr2_2:70083621-70083640 | Msa0268140:intron | 40.0% |
| !! | TTTTGCCATGGTTGATACCT+TGG | + | chr2_2:70083629-70083648 | None:intergenic | 40.0% |
| AGTTTCCTTGAAGCATATGC+TGG | - | chr2_2:70083661-70083680 | Msa0268140:intron | 40.0% | |
| ATTCTCCAGCATATGCTTCA+AGG | + | chr2_2:70083669-70083688 | None:intergenic | 40.0% | |
| TATGCTGGAGAATCAAGAGA+TGG | - | chr2_2:70083676-70083695 | Msa0268140:intron | 40.0% | |
| TCAGCTGCAAAATTCTCAAC+TGG | - | chr2_2:70083703-70083722 | Msa0268140:intron | 40.0% | |
| TGACCTGAAAAGAGCTAACA+CGG | + | chr2_2:70083794-70083813 | None:intergenic | 40.0% | |
| !! | TCACGCTTTGGGAAAATAGA+AGG | - | chr2_2:70083811-70083830 | Msa0268140:intron | 40.0% |
| ACTTCAGGTCTTTGCTTGAA+AGG | - | chr2_2:70083838-70083857 | Msa0268140:intron | 40.0% | |
| TAGTTGTGTGCATTCATGTG+TGG | - | chr2_2:70083875-70083894 | Msa0268140:intron | 40.0% | |
| ! | AAGGCATCATCCATTTCCTA+TGG | + | chr2_2:70083942-70083961 | None:intergenic | 40.0% |
| CATGAACTACCATGGAGCAA+TGG | + | chr2_2:70083122-70083141 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | - | chr2_2:70083124-70083143 | Msa0268140:CDS | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | + | chr2_2:70083752-70083771 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | + | chr2_2:70083774-70083793 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | - | chr2_2:70083800-70083819 | Msa0268140:intron | 45.0% |
| CATGAACTACCATGGAGCAA+TGG | + | chr2_2:70083122-70083141 | None:intergenic | 45.0% | |
| GCTCCATGGTAGTTCATGTT+TGG | - | chr2_2:70083124-70083143 | Msa0268140:CDS | 45.0% | |
| GTCATCTCTACTATTCGTGC+CGG | + | chr2_2:70083752-70083771 | None:intergenic | 45.0% | |
| CGGCGTAAGAAAGGTCATTA+AGG | + | chr2_2:70083774-70083793 | None:intergenic | 45.0% | |
| !!! | CTCTTTTCAGGTCACGCTTT+GGG | - | chr2_2:70083800-70083819 | Msa0268140:intron | 45.0% |
| CTTCAGATGCCATTGCTCCA+TGG | - | chr2_2:70083110-70083129 | Msa0268140:CDS | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | + | chr2_2:70083783-70083802 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | - | chr2_2:70083788-70083807 | Msa0268140:intron | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | - | chr2_2:70083799-70083818 | Msa0268140:intron | 50.0% |
| CTTCAGATGCCATTGCTCCA+TGG | - | chr2_2:70083110-70083129 | Msa0268140:CDS | 50.0% | |
| GAGCTAACACGGCGTAAGAA+AGG | + | chr2_2:70083783-70083802 | None:intergenic | 50.0% | |
| !! | ACGCCGTGTTAGCTCTTTTC+AGG | - | chr2_2:70083788-70083807 | Msa0268140:intron | 50.0% |
| !!! | GCTCTTTTCAGGTCACGCTT+TGG | - | chr2_2:70083799-70083818 | Msa0268140:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70082587 | 70084247 | 70082587 | ID=Msa0268140;Name=Msa0268140 |
| chr2_2 | mRNA | 70082587 | 70084247 | 70082587 | ID=Msa0268140-mRNA-1;Parent=Msa0268140;Name=Msa0268140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=45|1|1|1|1|1|3|134|246 |
| chr2_2 | exon | 70082587 | 70083221 | 70082587 | ID=Msa0268140-mRNA-1:exon:22459;Parent=Msa0268140-mRNA-1 |
| chr2_2 | exon | 70083371 | 70083436 | 70083371 | ID=Msa0268140-mRNA-1:exon:22458;Parent=Msa0268140-mRNA-1 |
| chr2_2 | exon | 70084029 | 70084247 | 70084029 | ID=Msa0268140-mRNA-1:exon:22457;Parent=Msa0268140-mRNA-1 |
| chr2_2 | five_prime_UTR | 70084203 | 70084247 | 70084203 | ID=Msa0268140-mRNA-1:five_prime_utr;Parent=Msa0268140-mRNA-1 |
| chr2_2 | CDS | 70084029 | 70084202 | 70084029 | ID=Msa0268140-mRNA-1:cds;Parent=Msa0268140-mRNA-1 |
| chr2_2 | CDS | 70083371 | 70083436 | 70083371 | ID=Msa0268140-mRNA-1:cds;Parent=Msa0268140-mRNA-1 |
| chr2_2 | CDS | 70082721 | 70083221 | 70082721 | ID=Msa0268140-mRNA-1:cds;Parent=Msa0268140-mRNA-1 |
| chr2_2 | three_prime_UTR | 70082587 | 70082720 | 70082587 | ID=Msa0268140-mRNA-1:three_prime_utr;Parent=Msa0268140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
