AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249760 MtrunA17_Chr2g0296021 99.095 221 2 0 1 221 1 221 6.11e-167 458
Msa0249760 MtrunA17_Chr1g0169861 67.580 219 71 0 1 219 51 269 1.12e-115 331
Msa0249760 MtrunA17_Chr4g0010271 71.233 219 63 0 1 219 1 219 4.05e-113 322
Msa0249760 MtrunA17_Chr7g0237561 70.455 220 65 0 1 220 1 220 1.83e-109 313
Msa0249760 MtrunA17_Chr4g0043521 67.526 194 63 0 2 195 4 197 5.82e-102 294
Msa0249760 MtrunA17_Chr2g0291651 64.948 194 68 0 2 195 6 199 8.81e-99 286
Msa0249760 MtrunA17_Chr7g0237521 63.590 195 71 0 1 195 1 195 1.66e-94 275
Msa0249760 MtrunA17_Chr1g0210521 51.261 238 97 1 1 219 1 238 1.21e-90 266
Msa0249760 MtrunA17_Chr1g0169851 57.823 147 47 1 57 188 8 154 6.42e-54 170
Msa0249760 MtrunA17_Chr4g0010211 68.519 108 34 0 64 171 3 110 1.99e-49 157
Msa0249760 MtrunA17_Chr5g0441741 35.545 211 133 3 7 216 4 212 1.59e-40 138
Msa0249760 MtrunA17_Chr4g0026121 32.394 213 141 3 5 216 2 212 1.84e-40 137
Msa0249760 MtrunA17_Chr4g0064371 28.372 215 147 3 7 216 4 216 9.53e-33 118
Msa0249760 MtrunA17_Chr3g0126921 20.628 223 158 7 8 219 15 229 9.82e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249760 AT4G15780.1 88.827 179 19 1 1 178 1 179 1.48e-119 337
Msa0249760 AT1G04760.2 67.727 220 71 0 1 220 1 220 1.58e-110 316
Msa0249760 AT1G04760.1 67.727 220 71 0 1 220 1 220 1.58e-110 316
Msa0249760 AT2G33120.1 70.909 220 64 0 1 220 1 220 2.95e-110 315
Msa0249760 AT2G32670.1 70.000 220 66 0 1 220 66 285 7.35e-110 317
Msa0249760 AT1G04750.1 69.406 219 67 0 1 219 1 219 4.20e-108 310
Msa0249760 AT2G33120.2 68.722 227 63 1 1 219 1 227 1.98e-107 308
Msa0249760 AT3G54300.3 51.667 240 97 2 1 221 1 240 6.53e-92 270
Msa0249760 AT3G54300.2 51.667 240 97 2 1 221 1 240 6.53e-92 270
Msa0249760 AT3G54300.1 51.667 240 97 2 1 221 1 240 6.53e-92 270
Msa0249760 AT2G33110.1 59.361 219 85 1 1 219 1 215 2.53e-85 252
Msa0249760 AT2G33110.2 64.103 156 56 0 1 156 1 156 1.11e-71 216
Msa0249760 AT1G04750.2 68.085 141 45 0 79 219 1 141 4.18e-59 183
Msa0249760 AT1G04750.4 68.085 141 45 0 79 219 1 141 4.18e-59 183
Msa0249760 AT1G04750.3 68.085 141 45 0 79 219 1 141 4.18e-59 183
Msa0249760 AT5G22360.1 33.645 214 138 3 5 216 2 213 5.90e-45 149
Msa0249760 AT5G11150.1 33.645 214 138 3 5 216 2 213 1.95e-42 143
Msa0249760 AT5G11150.2 33.645 214 138 3 5 216 2 213 2.03e-42 143
Msa0249760 AT4G32150.1 34.737 190 121 3 5 193 2 189 1.72e-38 133
Msa0249760 AT2G25340.1 32.632 190 125 3 5 193 2 189 6.58e-33 118
Msa0249760 AT2G33120.3 72.093 86 24 0 134 219 52 137 1.18e-30 110
Msa0249760 AT3G24890.2 42.268 97 42 2 114 200 15 107 9.52e-19 79.3

Find 53 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGTCTGAACAAGGAATT+TGG 0.190475 2_2:+37441122 Msa0249760:CDS
TCAGAACATGAAAATTAAAT+TGG 0.225912 2_2:+37442376 Msa0249760:CDS
AAAATTAAATTGGTTGTTCT+TGG 0.225914 2_2:+37442386 Msa0249760:CDS
AAATTCCTTGTTCAGACTTT+TGG 0.253010 2_2:-37441120 None:intergenic
CTGCTTGCTAACAGATTCTT+TGG 0.273100 2_2:-37441018 None:intergenic
GATAAAGATATGAATGTTAT+TGG 0.317568 2_2:+37442805 Msa0249760:three_prime_UTR
GATATGAATGTTATTGGTAT+TGG 0.323778 2_2:+37442811 Msa0249760:three_prime_UTR
TAATTGAAAGCTTACTAATC+AGG 0.341503 2_2:+37442479 Msa0249760:three_prime_UTR
ACTGTAGGTGAACTTGTTAT+TGG 0.347549 2_2:-37439224 None:intergenic
TTCATGTGCTCTTTCATAAT+CGG 0.353938 2_2:-37441239 None:intergenic
ATTGGTAATTGTTAAATAGA+AGG 0.356866 2_2:+37442829 Msa0249760:three_prime_UTR
AAAGTTTCCTACCTTGTTGC+TGG 0.359079 2_2:+37442780 Msa0249760:three_prime_UTR
TTTCTTGTCGAAGATGGTTA+TGG 0.385122 2_2:+37439268 Msa0249760:CDS
AACTAAGAAACTGCCCCTCC+TGG 0.411382 2_2:-37442752 None:intergenic
AGGAGGGGCAGTTTCTTAGT+TGG 0.429047 2_2:+37442754 Msa0249760:three_prime_UTR
AGTCAGCTTTGACACGTTCA+AGG 0.435569 2_2:-37441055 None:intergenic
GTTATCTGGCTCTCTATTTG+TGG 0.442264 2_2:+37442431 Msa0249760:CDS
AAAGTCTGAACAAGGAATTT+GGG 0.465281 2_2:+37441123 Msa0249760:CDS
GTGAACTTGTTATTGGAAGA+AGG 0.469932 2_2:-37439217 None:intergenic
ATCTGGCTCTCTATTTGTGG+TGG 0.485999 2_2:+37442434 Msa0249760:CDS
AGACACTGAGCTGCAATGGC+AGG 0.504015 2_2:-37439184 None:intergenic
CTGAAGACACTGAGCTGCAA+TGG 0.506758 2_2:-37439188 None:intergenic
ATCTTCGACAAGAAAATTGA+AGG 0.507938 2_2:-37439260 None:intergenic
GTTTCCTACCTTGTTGCTGG+TGG 0.517120 2_2:+37442783 Msa0249760:three_prime_UTR
CACAGGTCCGTCGGAAGATG+TGG 0.530944 2_2:+37442351 Msa0249760:CDS
ATATACAGCTTTGTAGCTCG+TGG 0.541984 2_2:+37439118 Msa0249760:CDS
GCTGACTTTAAGAAAAGATA+CGG 0.549060 2_2:+37441071 Msa0249760:CDS
GCTGAGTACACCGAGTTCAC+TGG 0.552986 2_2:+37439154 Msa0249760:CDS
AATTGTTAAATAGAAGGAAA+GGG 0.554591 2_2:+37442835 Msa0249760:three_prime_UTR
TAATTGTTAAATAGAAGGAA+AGG 0.556270 2_2:+37442834 Msa0249760:three_prime_UTR
ACTAAGAAACTGCCCCTCCT+GGG 0.557639 2_2:-37442751 None:intergenic
TGAAAAGCTATTAAAAGTGA+AGG 0.564756 2_2:+37441289 Msa0249760:CDS
CAAGAAAATTGAAGGTGTGA+TGG 0.566358 2_2:-37439252 None:intergenic
CAGATCAAACAGTCAATCAC+AGG 0.575000 2_2:-37442871 None:intergenic
GACACGTTCAAGGAAAGCAA+TGG 0.576248 2_2:-37441045 None:intergenic
GCTCAAGATTTCAGAAAGCA+AGG 0.582915 2_2:+37442326 Msa0249760:CDS
AGGAAAGTTACCAGTGAACT+CGG 0.587842 2_2:-37439164 None:intergenic
AGAAGAAAATCAACCCAGGA+GGG 0.590084 2_2:+37442738 Msa0249760:three_prime_UTR
TTTCAGAAAGCAAGGAACAC+AGG 0.591739 2_2:+37442334 Msa0249760:CDS
AGCAAGGAACACAGGTCCGT+CGG 0.592470 2_2:+37442342 Msa0249760:CDS
TTTAAGAAAAGATACGGTGG+TGG 0.612427 2_2:+37441077 Msa0249760:CDS
GAAGAAAATCAACCCAGGAG+GGG 0.614982 2_2:+37442739 Msa0249760:three_prime_UTR
ATCTTTATCCACCAGCAACA+AGG 0.624615 2_2:-37442791 None:intergenic
TATTGCCAAAAGTCTGAACA+AGG 0.635316 2_2:+37441115 Msa0249760:CDS
CTTTGTAGCTCGTGGAACGA+TGG 0.636038 2_2:+37439126 Msa0249760:CDS
CATGTTAGAAAATATAGACA+AGG 0.648118 2_2:+37441337 Msa0249760:CDS
GCTCTGTAACTGAGTTAACT+CGG 0.648403 2_2:-37439074 None:intergenic
GGTGTGATGGTCACAACTGT+AGG 0.651595 2_2:-37439239 None:intergenic
TTATCCACCAGCAACAAGGT+AGG 0.655353 2_2:-37442787 None:intergenic
TCTGATACCACATCTTCCGA+CGG 0.674197 2_2:-37442358 None:intergenic
TAGAAGAAAATCAACCCAGG+AGG 0.696402 2_2:+37442737 Msa0249760:three_prime_UTR
GACTTTAAGAAAAGATACGG+TGG 0.697543 2_2:+37441074 Msa0249760:CDS
ACATAGAAGAAAATCAACCC+AGG 0.700486 2_2:+37442734 Msa0249760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATATTAAATT+TGG + chr2_2:37439850-37439869 Msa0249760:intron 0.0%
!!! TATTTTTTTATATTAAATTT+GGG + chr2_2:37439851-37439870 Msa0249760:intron 0.0%
!!! TTATTTTTTTATATTAAATT+TGG + chr2_2:37439850-37439869 Msa0249760:intron 0.0%
!!! TATTTTTTTATATTAAATTT+GGG + chr2_2:37439851-37439870 Msa0249760:intron 0.0%
!!! TGTAATTAATTTTCAATAAA+CGG + chr2_2:37438959-37438978 Msa0249760:five_prime_UTR 10.0%
!! AAAAATAATTCTTAGAATTT+CGG - chr2_2:37439838-37439857 None:intergenic 10.0%
!! GTATAAAATGTTTAATAATA+TGG + chr2_2:37441201-37441220 Msa0249760:intron 10.0%
!!! TGTAATTAATTTTCAATAAA+CGG + chr2_2:37438959-37438978 Msa0249760:five_prime_UTR 10.0%
!! AAAAATAATTCTTAGAATTT+CGG - chr2_2:37439838-37439857 None:intergenic 10.0%
!! GTATAAAATGTTTAATAATA+TGG + chr2_2:37441201-37441220 Msa0249760:intron 10.0%
!! CAAATATAGACAATAATTAA+TGG - chr2_2:37440381-37440400 None:intergenic 15.0%
!! CATTAATTATTGTCTATATT+TGG + chr2_2:37440379-37440398 Msa0249760:intron 15.0%
!!! TTTTAGAAAAAGATAAACTT+TGG + chr2_2:37440443-37440462 Msa0249760:intron 15.0%
!! ATAAAAGCTTATTATTAGTA+AGG + chr2_2:37440624-37440643 Msa0249760:intron 15.0%
!! CAAATATAGACAATAATTAA+TGG - chr2_2:37440381-37440400 None:intergenic 15.0%
!! CATTAATTATTGTCTATATT+TGG + chr2_2:37440379-37440398 Msa0249760:intron 15.0%
!!! TTTTAGAAAAAGATAAACTT+TGG + chr2_2:37440443-37440462 Msa0249760:intron 15.0%
!! ATAAAAGCTTATTATTAGTA+AGG + chr2_2:37440624-37440643 Msa0249760:intron 15.0%
!! TATAGAAATTGGAAAAAAGT+TGG + chr2_2:37438995-37439014 Msa0249760:five_prime_UTR 20.0%
!! ATAGAAATTGGAAAAAAGTT+GGG + chr2_2:37438996-37439015 Msa0249760:five_prime_UTR 20.0%
!! TTTATTGAGTTCTCTAATTA+AGG + chr2_2:37439547-37439566 Msa0249760:intron 20.0%
!!! ATTAAGGTAAATGATTTTTG+TGG + chr2_2:37439581-37439600 Msa0249760:intron 20.0%
!!! TTTTATATTAAATTTGGGGA+AGG + chr2_2:37439856-37439875 Msa0249760:intron 20.0%
!! TTTATATTAAATTTGGGGAA+GGG + chr2_2:37439857-37439876 Msa0249760:intron 20.0%
!! ATTCAAAAACCGTATTAAAA+TGG - chr2_2:37439916-37439935 None:intergenic 20.0%
!!! ATTTTAATACGGTTTTTGAA+TGG + chr2_2:37439915-37439934 Msa0249760:intron 20.0%
!!! AAGTATTTGTTTTTGGATTT+TGG + chr2_2:37440014-37440033 Msa0249760:intron 20.0%
!!! ATTAGTTATGCATTCTTTTT+AGG + chr2_2:37440055-37440074 Msa0249760:intron 20.0%
!! TGTAATTAAAGAACATTGAA+AGG + chr2_2:37440330-37440349 Msa0249760:intron 20.0%
!! ATTATTGTCTATATTTGGAT+TGG + chr2_2:37440384-37440403 Msa0249760:intron 20.0%
!!! ATCTTTTTCTAAAATCACAA+TGG - chr2_2:37440437-37440456 None:intergenic 20.0%
!!! ATAAGCTTTTATATGTTTGT+AGG - chr2_2:37440616-37440635 None:intergenic 20.0%
!!! TTTAAAATCTAAGCAAACAA+CGG - chr2_2:37440915-37440934 None:intergenic 20.0%
!!! CCATTTTTTCAAATAATTAC+TGG - chr2_2:37441774-37441793 None:intergenic 20.0%
!! CCAGTAATTATTTGAAAAAA+TGG + chr2_2:37441771-37441790 Msa0249760:intron 20.0%
!! CTTAAATAGAGCTTAAAATA+AGG - chr2_2:37442095-37442114 None:intergenic 20.0%
!!! CTTTAATCATTTATGTTTTC+AGG + chr2_2:37442164-37442183 Msa0249760:intron 20.0%
!!! GAAAAGATTTTGTAATTTTC+AGG + chr2_2:37442304-37442323 Msa0249760:intron 20.0%
!! TCAGAACATGAAAATTAAAT+TGG + chr2_2:37442376-37442395 Msa0249760:CDS 20.0%
!! AAAATTAAATTGGTTGTTCT+TGG + chr2_2:37442386-37442405 Msa0249760:CDS 20.0%
!!! ACATCTAATCATATTTTACA+AGG + chr2_2:37442558-37442577 Msa0249760:three_prime_UTR 20.0%
!!! TAAAATTTTTGTATACTGTC+AGG + chr2_2:37442675-37442694 Msa0249760:three_prime_UTR 20.0%
!! GATAAAGATATGAATGTTAT+TGG + chr2_2:37442805-37442824 Msa0249760:three_prime_UTR 20.0%
!!! ATTGGTAATTGTTAAATAGA+AGG + chr2_2:37442829-37442848 Msa0249760:three_prime_UTR 20.0%
!! TAATTGTTAAATAGAAGGAA+AGG + chr2_2:37442834-37442853 Msa0249760:three_prime_UTR 20.0%
!! AATTGTTAAATAGAAGGAAA+GGG + chr2_2:37442835-37442854 Msa0249760:three_prime_UTR 20.0%
!! TATAGAAATTGGAAAAAAGT+TGG + chr2_2:37438995-37439014 Msa0249760:five_prime_UTR 20.0%
!! ATAGAAATTGGAAAAAAGTT+GGG + chr2_2:37438996-37439015 Msa0249760:five_prime_UTR 20.0%
!! TTTATTGAGTTCTCTAATTA+AGG + chr2_2:37439547-37439566 Msa0249760:intron 20.0%
!!! ATTAAGGTAAATGATTTTTG+TGG + chr2_2:37439581-37439600 Msa0249760:intron 20.0%
!!! TTTTATATTAAATTTGGGGA+AGG + chr2_2:37439856-37439875 Msa0249760:intron 20.0%
!! TTTATATTAAATTTGGGGAA+GGG + chr2_2:37439857-37439876 Msa0249760:intron 20.0%
!! ATTCAAAAACCGTATTAAAA+TGG - chr2_2:37439916-37439935 None:intergenic 20.0%
!!! ATTTTAATACGGTTTTTGAA+TGG + chr2_2:37439915-37439934 Msa0249760:intron 20.0%
!!! AAGTATTTGTTTTTGGATTT+TGG + chr2_2:37440014-37440033 Msa0249760:intron 20.0%
!!! ATTAGTTATGCATTCTTTTT+AGG + chr2_2:37440055-37440074 Msa0249760:intron 20.0%
!! TGTAATTAAAGAACATTGAA+AGG + chr2_2:37440330-37440349 Msa0249760:intron 20.0%
!! ATTATTGTCTATATTTGGAT+TGG + chr2_2:37440384-37440403 Msa0249760:intron 20.0%
!!! ATCTTTTTCTAAAATCACAA+TGG - chr2_2:37440437-37440456 None:intergenic 20.0%
!!! ATAAGCTTTTATATGTTTGT+AGG - chr2_2:37440616-37440635 None:intergenic 20.0%
!!! TTTAAAATCTAAGCAAACAA+CGG - chr2_2:37440915-37440934 None:intergenic 20.0%
!!! CCATTTTTTCAAATAATTAC+TGG - chr2_2:37441774-37441793 None:intergenic 20.0%
!! CCAGTAATTATTTGAAAAAA+TGG + chr2_2:37441771-37441790 Msa0249760:intron 20.0%
!! CTTAAATAGAGCTTAAAATA+AGG - chr2_2:37442095-37442114 None:intergenic 20.0%
!!! CTTTAATCATTTATGTTTTC+AGG + chr2_2:37442164-37442183 Msa0249760:intron 20.0%
!!! GAAAAGATTTTGTAATTTTC+AGG + chr2_2:37442304-37442323 Msa0249760:intron 20.0%
!! TCAGAACATGAAAATTAAAT+TGG + chr2_2:37442376-37442395 Msa0249760:CDS 20.0%
!! AAAATTAAATTGGTTGTTCT+TGG + chr2_2:37442386-37442405 Msa0249760:CDS 20.0%
!!! ACATCTAATCATATTTTACA+AGG + chr2_2:37442558-37442577 Msa0249760:three_prime_UTR 20.0%
!!! TAAAATTTTTGTATACTGTC+AGG + chr2_2:37442675-37442694 Msa0249760:three_prime_UTR 20.0%
!! GATAAAGATATGAATGTTAT+TGG + chr2_2:37442805-37442824 Msa0249760:three_prime_UTR 20.0%
!!! ATTGGTAATTGTTAAATAGA+AGG + chr2_2:37442829-37442848 Msa0249760:three_prime_UTR 20.0%
!! TAATTGTTAAATAGAAGGAA+AGG + chr2_2:37442834-37442853 Msa0249760:three_prime_UTR 20.0%
!! AATTGTTAAATAGAAGGAAA+GGG + chr2_2:37442835-37442854 Msa0249760:three_prime_UTR 20.0%
!! AATCTGAATTGTGTGTTTTT+AGG + chr2_2:37439382-37439401 Msa0249760:intron 25.0%
!!! GCTTAAAGTTTTGATCTTTT+TGG + chr2_2:37439425-37439444 Msa0249760:intron 25.0%
!! TGTGGAATGTTGTTATATTT+TGG + chr2_2:37439476-37439495 Msa0249760:intron 25.0%
!!! TTTTGGTGATTGAAGTAAAT+AGG + chr2_2:37439493-37439512 Msa0249760:intron 25.0%
!!! TAAGGTTTGTTAGTCAATTA+AGG + chr2_2:37439565-37439584 Msa0249760:intron 25.0%
! TGTCATTAGATGATTAAATC+CGG + chr2_2:37439621-37439640 Msa0249760:intron 25.0%
!!! CACTAATGACCATTTTAATA+CGG + chr2_2:37439904-37439923 Msa0249760:intron 25.0%
! TAAAGGATTGACAAAATGAT+CGG - chr2_2:37440143-37440162 None:intergenic 25.0%
!!! TAGTTTTTGAGTTGTGATTA+GGG + chr2_2:37440224-37440243 Msa0249760:intron 25.0%
!! AAAGAACATTGAAAGGATTT+TGG + chr2_2:37440337-37440356 Msa0249760:intron 25.0%
!!! AAAGGATTTTGGAATGATTA+CGG + chr2_2:37440348-37440367 Msa0249760:intron 25.0%
!! TTGCTTAGATTTTAAACATC+AGG + chr2_2:37440919-37440938 Msa0249760:intron 25.0%
!!! TAAAGTTTGTTGACATCTTT+AGG + chr2_2:37441162-37441181 Msa0249760:intron 25.0%
!! TAATAGCTTTTCAATCTCTT+CGG - chr2_2:37441282-37441301 None:intergenic 25.0%
! TGAAAAGCTATTAAAAGTGA+AGG + chr2_2:37441289-37441308 Msa0249760:CDS 25.0%
! CATGTTAGAAAATATAGACA+AGG + chr2_2:37441337-37441356 Msa0249760:CDS 25.0%
!!! AAAATGGATTGTAAGTTAGT+AGG - chr2_2:37441452-37441471 None:intergenic 25.0%
!!! TTTTAGAGAAAACGTGAAAA+TGG - chr2_2:37441468-37441487 None:intergenic 25.0%
!!! TCACGTTTTCTCTAAAAATA+TGG + chr2_2:37441471-37441490 Msa0249760:intron 25.0%
!!! CACGTTTTCTCTAAAAATAT+GGG + chr2_2:37441472-37441491 Msa0249760:intron 25.0%
!! GAAGTATTAAGAATTTGAGA+GGG - chr2_2:37441605-37441624 None:intergenic 25.0%
!! TGAAGTATTAAGAATTTGAG+AGG - chr2_2:37441606-37441625 None:intergenic 25.0%
! AAATGTTAAGAACAATGTGA+AGG + chr2_2:37441644-37441663 Msa0249760:intron 25.0%
! ACAACAGTGATTAAATGATT+AGG - chr2_2:37441958-37441977 None:intergenic 25.0%
!! ATTTTAAGCTCTATTTAAGC+TGG + chr2_2:37442096-37442115 Msa0249760:intron 25.0%
! TAATTGAAAGCTTACTAATC+AGG + chr2_2:37442479-37442498 Msa0249760:three_prime_UTR 25.0%
! GAAGATGGTAAAAATATGAT+TGG + chr2_2:37442644-37442663 Msa0249760:three_prime_UTR 25.0%
! GATATGAATGTTATTGGTAT+TGG + chr2_2:37442811-37442830 Msa0249760:three_prime_UTR 25.0%
!! AATCTGAATTGTGTGTTTTT+AGG + chr2_2:37439382-37439401 Msa0249760:intron 25.0%
!!! GCTTAAAGTTTTGATCTTTT+TGG + chr2_2:37439425-37439444 Msa0249760:intron 25.0%
!! TGTGGAATGTTGTTATATTT+TGG + chr2_2:37439476-37439495 Msa0249760:intron 25.0%
!!! TTTTGGTGATTGAAGTAAAT+AGG + chr2_2:37439493-37439512 Msa0249760:intron 25.0%
!!! TAAGGTTTGTTAGTCAATTA+AGG + chr2_2:37439565-37439584 Msa0249760:intron 25.0%
! TGTCATTAGATGATTAAATC+CGG + chr2_2:37439621-37439640 Msa0249760:intron 25.0%
!!! CACTAATGACCATTTTAATA+CGG + chr2_2:37439904-37439923 Msa0249760:intron 25.0%
! TAAAGGATTGACAAAATGAT+CGG - chr2_2:37440143-37440162 None:intergenic 25.0%
!!! TAGTTTTTGAGTTGTGATTA+GGG + chr2_2:37440224-37440243 Msa0249760:intron 25.0%
!! AAAGAACATTGAAAGGATTT+TGG + chr2_2:37440337-37440356 Msa0249760:intron 25.0%
!!! AAAGGATTTTGGAATGATTA+CGG + chr2_2:37440348-37440367 Msa0249760:intron 25.0%
!! TTGCTTAGATTTTAAACATC+AGG + chr2_2:37440919-37440938 Msa0249760:intron 25.0%
!!! TAAAGTTTGTTGACATCTTT+AGG + chr2_2:37441162-37441181 Msa0249760:intron 25.0%
!! TAATAGCTTTTCAATCTCTT+CGG - chr2_2:37441282-37441301 None:intergenic 25.0%
! TGAAAAGCTATTAAAAGTGA+AGG + chr2_2:37441289-37441308 Msa0249760:CDS 25.0%
! CATGTTAGAAAATATAGACA+AGG + chr2_2:37441337-37441356 Msa0249760:CDS 25.0%
!!! AAAATGGATTGTAAGTTAGT+AGG - chr2_2:37441452-37441471 None:intergenic 25.0%
!!! TTTTAGAGAAAACGTGAAAA+TGG - chr2_2:37441468-37441487 None:intergenic 25.0%
!!! TCACGTTTTCTCTAAAAATA+TGG + chr2_2:37441471-37441490 Msa0249760:intron 25.0%
!!! CACGTTTTCTCTAAAAATAT+GGG + chr2_2:37441472-37441491 Msa0249760:intron 25.0%
!! GAAGTATTAAGAATTTGAGA+GGG - chr2_2:37441605-37441624 None:intergenic 25.0%
!! TGAAGTATTAAGAATTTGAG+AGG - chr2_2:37441606-37441625 None:intergenic 25.0%
! AAATGTTAAGAACAATGTGA+AGG + chr2_2:37441644-37441663 Msa0249760:intron 25.0%
! ACAACAGTGATTAAATGATT+AGG - chr2_2:37441958-37441977 None:intergenic 25.0%
!! ATTTTAAGCTCTATTTAAGC+TGG + chr2_2:37442096-37442115 Msa0249760:intron 25.0%
! TAATTGAAAGCTTACTAATC+AGG + chr2_2:37442479-37442498 Msa0249760:three_prime_UTR 25.0%
! GAAGATGGTAAAAATATGAT+TGG + chr2_2:37442644-37442663 Msa0249760:three_prime_UTR 25.0%
! GATATGAATGTTATTGGTAT+TGG + chr2_2:37442811-37442830 Msa0249760:three_prime_UTR 25.0%
! CAAAAAGAGGGTATAGAAAT+TGG + chr2_2:37438984-37439003 Msa0249760:five_prime_UTR 30.0%
ATCTTCGACAAGAAAATTGA+AGG - chr2_2:37439263-37439282 None:intergenic 30.0%
! TTCAATTTTCTTGTCGAAGA+TGG + chr2_2:37439262-37439281 Msa0249760:CDS 30.0%
!!! AATTGTGTGTTTTTAGGTGA+TGG + chr2_2:37439388-37439407 Msa0249760:intron 30.0%
!!! GGTTTTTGAGTTGATTTTAG+TGG + chr2_2:37439446-37439465 Msa0249760:intron 30.0%
!!! TTTTGAGTTGATTTTAGTGG+TGG + chr2_2:37439449-37439468 Msa0249760:intron 30.0%
!!! TTTGAGTTGATTTTAGTGGT+GGG + chr2_2:37439450-37439469 Msa0249760:intron 30.0%
CCTAACTCAACTTATAAAAC+CGG - chr2_2:37439810-37439829 None:intergenic 30.0%
TAATTCTTAGAATTTCGGCT+GGG - chr2_2:37439833-37439852 None:intergenic 30.0%
ATAATTCTTAGAATTTCGGC+TGG - chr2_2:37439834-37439853 None:intergenic 30.0%
AAAAACAAATACTTCTAGCC+TGG - chr2_2:37440008-37440027 None:intergenic 30.0%
!!! AGGCTAGAAGTATTTGTTTT+TGG + chr2_2:37440007-37440026 Msa0249760:intron 30.0%
TCAATAATCAGGGATATTGA+TGG + chr2_2:37440112-37440131 Msa0249760:intron 30.0%
CAATAATCAGGGATATTGAT+GGG + chr2_2:37440113-37440132 Msa0249760:intron 30.0%
ATGCAAACATTGTTCAAACA+AGG + chr2_2:37440172-37440191 Msa0249760:intron 30.0%
TGCAAACATTGTTCAAACAA+GGG + chr2_2:37440173-37440192 Msa0249760:intron 30.0%
!!! GTAGTTTTTGAGTTGTGATT+AGG + chr2_2:37440223-37440242 Msa0249760:intron 30.0%
!! TCCATTTTTCCAAAAGGTTT+CGG + chr2_2:37440581-37440600 Msa0249760:intron 30.0%
! TGTTTATTTCCGAAACCTTT+TGG - chr2_2:37440593-37440612 None:intergenic 30.0%
TGTTATATTTAGTGAGAGCA+TGG - chr2_2:37440845-37440864 None:intergenic 30.0%
! GCTGACTTTAAGAAAAGATA+CGG + chr2_2:37441071-37441090 Msa0249760:CDS 30.0%
! AAATTCCTTGTTCAGACTTT+TGG - chr2_2:37441123-37441142 None:intergenic 30.0%
AAAAGTCTGAACAAGGAATT+TGG + chr2_2:37441122-37441141 Msa0249760:CDS 30.0%
AAAGTCTGAACAAGGAATTT+GGG + chr2_2:37441123-37441142 Msa0249760:CDS 30.0%
TTCATGTGCTCTTTCATAAT+CGG - chr2_2:37441242-37441261 None:intergenic 30.0%
!!! AGACAAGGTACTGTTTTTTT+AGG + chr2_2:37441352-37441371 Msa0249760:intron 30.0%
TAACTGTGGTAGAAAATGAT+GGG - chr2_2:37441413-37441432 None:intergenic 30.0%
ATAACTGTGGTAGAAAATGA+TGG - chr2_2:37441414-37441433 None:intergenic 30.0%
TTCTACCACAGTTATCATTA+TGG + chr2_2:37441419-37441438 Msa0249760:intron 30.0%
! TTTCTCTAAAAATATGGGAG+TGG + chr2_2:37441477-37441496 Msa0249760:intron 30.0%
AACAATGTGAAGGACATAAT+TGG + chr2_2:37441654-37441673 Msa0249760:intron 30.0%
! AGTTACTCAAAGTTTCAAGT+GGG - chr2_2:37442000-37442019 None:intergenic 30.0%
AGACAATGCAAGAAATTCAT+AGG - chr2_2:37442032-37442051 None:intergenic 30.0%
!!! TCTTGGAATTCTGTTGTTTT+TGG + chr2_2:37442403-37442422 Msa0249760:CDS 30.0%
!!! AATTCTGTTGTTTTTGGTTC+TGG + chr2_2:37442409-37442428 Msa0249760:CDS 30.0%
!!! TTCATAATTTTTTCCTGACG+TGG + chr2_2:37442593-37442612 Msa0249760:intron 30.0%
! CAAAAAGAGGGTATAGAAAT+TGG + chr2_2:37438984-37439003 Msa0249760:five_prime_UTR 30.0%
ATCTTCGACAAGAAAATTGA+AGG - chr2_2:37439263-37439282 None:intergenic 30.0%
! TTCAATTTTCTTGTCGAAGA+TGG + chr2_2:37439262-37439281 Msa0249760:CDS 30.0%
!!! AATTGTGTGTTTTTAGGTGA+TGG + chr2_2:37439388-37439407 Msa0249760:intron 30.0%
!!! GGTTTTTGAGTTGATTTTAG+TGG + chr2_2:37439446-37439465 Msa0249760:intron 30.0%
!!! TTTTGAGTTGATTTTAGTGG+TGG + chr2_2:37439449-37439468 Msa0249760:intron 30.0%
!!! TTTGAGTTGATTTTAGTGGT+GGG + chr2_2:37439450-37439469 Msa0249760:intron 30.0%
CCTAACTCAACTTATAAAAC+CGG - chr2_2:37439810-37439829 None:intergenic 30.0%
TAATTCTTAGAATTTCGGCT+GGG - chr2_2:37439833-37439852 None:intergenic 30.0%
ATAATTCTTAGAATTTCGGC+TGG - chr2_2:37439834-37439853 None:intergenic 30.0%
AAAAACAAATACTTCTAGCC+TGG - chr2_2:37440008-37440027 None:intergenic 30.0%
!!! AGGCTAGAAGTATTTGTTTT+TGG + chr2_2:37440007-37440026 Msa0249760:intron 30.0%
TCAATAATCAGGGATATTGA+TGG + chr2_2:37440112-37440131 Msa0249760:intron 30.0%
CAATAATCAGGGATATTGAT+GGG + chr2_2:37440113-37440132 Msa0249760:intron 30.0%
ATGCAAACATTGTTCAAACA+AGG + chr2_2:37440172-37440191 Msa0249760:intron 30.0%
TGCAAACATTGTTCAAACAA+GGG + chr2_2:37440173-37440192 Msa0249760:intron 30.0%
!!! GTAGTTTTTGAGTTGTGATT+AGG + chr2_2:37440223-37440242 Msa0249760:intron 30.0%
!! TCCATTTTTCCAAAAGGTTT+CGG + chr2_2:37440581-37440600 Msa0249760:intron 30.0%
! TGTTTATTTCCGAAACCTTT+TGG - chr2_2:37440593-37440612 None:intergenic 30.0%
TGTTATATTTAGTGAGAGCA+TGG - chr2_2:37440845-37440864 None:intergenic 30.0%
! GCTGACTTTAAGAAAAGATA+CGG + chr2_2:37441071-37441090 Msa0249760:CDS 30.0%
! AAATTCCTTGTTCAGACTTT+TGG - chr2_2:37441123-37441142 None:intergenic 30.0%
AAAAGTCTGAACAAGGAATT+TGG + chr2_2:37441122-37441141 Msa0249760:CDS 30.0%
AAAGTCTGAACAAGGAATTT+GGG + chr2_2:37441123-37441142 Msa0249760:CDS 30.0%
TTCATGTGCTCTTTCATAAT+CGG - chr2_2:37441242-37441261 None:intergenic 30.0%
!!! AGACAAGGTACTGTTTTTTT+AGG + chr2_2:37441352-37441371 Msa0249760:intron 30.0%
TAACTGTGGTAGAAAATGAT+GGG - chr2_2:37441413-37441432 None:intergenic 30.0%
ATAACTGTGGTAGAAAATGA+TGG - chr2_2:37441414-37441433 None:intergenic 30.0%
TTCTACCACAGTTATCATTA+TGG + chr2_2:37441419-37441438 Msa0249760:intron 30.0%
! TTTCTCTAAAAATATGGGAG+TGG + chr2_2:37441477-37441496 Msa0249760:intron 30.0%
AACAATGTGAAGGACATAAT+TGG + chr2_2:37441654-37441673 Msa0249760:intron 30.0%
! AGTTACTCAAAGTTTCAAGT+GGG - chr2_2:37442000-37442019 None:intergenic 30.0%
AGACAATGCAAGAAATTCAT+AGG - chr2_2:37442032-37442051 None:intergenic 30.0%
!!! TCTTGGAATTCTGTTGTTTT+TGG + chr2_2:37442403-37442422 Msa0249760:CDS 30.0%
!!! AATTCTGTTGTTTTTGGTTC+TGG + chr2_2:37442409-37442428 Msa0249760:CDS 30.0%
!!! TTCATAATTTTTTCCTGACG+TGG + chr2_2:37442593-37442612 Msa0249760:intron 30.0%
TCAATAAACGGCACAAAAAG+AGG + chr2_2:37438971-37438990 Msa0249760:five_prime_UTR 35.0%
CAATAAACGGCACAAAAAGA+GGG + chr2_2:37438972-37438991 Msa0249760:five_prime_UTR 35.0%
GAAATTGGAAAAAAGTTGGG+CGG + chr2_2:37438999-37439018 Msa0249760:five_prime_UTR 35.0%
!! GTGAACTTGTTATTGGAAGA+AGG - chr2_2:37439220-37439239 None:intergenic 35.0%
!! ACTGTAGGTGAACTTGTTAT+TGG - chr2_2:37439227-37439246 None:intergenic 35.0%
! CAAGAAAATTGAAGGTGTGA+TGG - chr2_2:37439255-37439274 None:intergenic 35.0%
TTTCTTGTCGAAGATGGTTA+TGG + chr2_2:37439268-37439287 Msa0249760:CDS 35.0%
TGTTATTAGCTGCCTAATTG+CGG + chr2_2:37439651-37439670 Msa0249760:intron 35.0%
TCTCACATTGCTTAGAGATA+TGG + chr2_2:37439741-37439760 Msa0249760:intron 35.0%
!! ACTTATAAAACCGGCTTGTA+AGG - chr2_2:37439801-37439820 None:intergenic 35.0%
!! CCGGTTTTATAAGTTGAGTT+AGG + chr2_2:37439807-37439826 Msa0249760:intron 35.0%
GATTTGAACTCAATACCTTG+AGG + chr2_2:37439937-37439956 Msa0249760:intron 35.0%
GTTTGCATGACTATCACTAA+AGG - chr2_2:37440160-37440179 None:intergenic 35.0%
TGATTAGGGTGCAATAGAAA+TGG + chr2_2:37440238-37440257 Msa0249760:intron 35.0%
TTGGAGCTTCAACAAAATCA+CGG + chr2_2:37440462-37440481 Msa0249760:intron 35.0%
AAGTTGACTATGTGCATGTT+TGG - chr2_2:37440521-37440540 None:intergenic 35.0%
!! TACAGCTCCATTTTTCCAAA+AGG + chr2_2:37440575-37440594 Msa0249760:intron 35.0%
!! TCCGAAACCTTTTGGAAAAA+TGG - chr2_2:37440585-37440604 None:intergenic 35.0%
! ATATTTAGTGAGAGCATGGA+AGG - chr2_2:37440841-37440860 None:intergenic 35.0%
GCTGCAATTTATAGAAAGCA+CGG - chr2_2:37440984-37441003 None:intergenic 35.0%
! GACTTTAAGAAAAGATACGG+TGG + chr2_2:37441074-37441093 Msa0249760:CDS 35.0%
TTTAAGAAAAGATACGGTGG+TGG + chr2_2:37441077-37441096 Msa0249760:CDS 35.0%
TATTGCCAAAAGTCTGAACA+AGG + chr2_2:37441115-37441134 Msa0249760:CDS 35.0%
!!! GGTACTGTTTTTTTAGGAAC+AGG + chr2_2:37441358-37441377 Msa0249760:intron 35.0%
!!! GTTTTTTTAGGAACAGGACT+TGG + chr2_2:37441364-37441383 Msa0249760:intron 35.0%
! GTAGAAAATGATGGGATATC+AGG - chr2_2:37441405-37441424 None:intergenic 35.0%
AGGATCCATAATGATAACTG+TGG - chr2_2:37441427-37441446 None:intergenic 35.0%
AACATTGCAATATGTAGCAC+TGG - chr2_2:37441887-37441906 None:intergenic 35.0%
CAGTTACTCAAAGTTTCAAG+TGG - chr2_2:37442001-37442020 None:intergenic 35.0%
!! TGTTTTCAGGCTATTGATAG+AGG + chr2_2:37442177-37442196 Msa0249760:intron 35.0%
AAAACAATGCTGTCTAACCT+TGG - chr2_2:37442261-37442280 None:intergenic 35.0%
!!! TGTTTTTGGTTCTGGTTATC+TGG + chr2_2:37442417-37442436 Msa0249760:CDS 35.0%
ACATAGAAGAAAATCAACCC+AGG + chr2_2:37442734-37442753 Msa0249760:three_prime_UTR 35.0%
TCAATAAACGGCACAAAAAG+AGG + chr2_2:37438971-37438990 Msa0249760:five_prime_UTR 35.0%
CAATAAACGGCACAAAAAGA+GGG + chr2_2:37438972-37438991 Msa0249760:five_prime_UTR 35.0%
GAAATTGGAAAAAAGTTGGG+CGG + chr2_2:37438999-37439018 Msa0249760:five_prime_UTR 35.0%
!! GTGAACTTGTTATTGGAAGA+AGG - chr2_2:37439220-37439239 None:intergenic 35.0%
!! ACTGTAGGTGAACTTGTTAT+TGG - chr2_2:37439227-37439246 None:intergenic 35.0%
! CAAGAAAATTGAAGGTGTGA+TGG - chr2_2:37439255-37439274 None:intergenic 35.0%
TTTCTTGTCGAAGATGGTTA+TGG + chr2_2:37439268-37439287 Msa0249760:CDS 35.0%
TGTTATTAGCTGCCTAATTG+CGG + chr2_2:37439651-37439670 Msa0249760:intron 35.0%
TCTCACATTGCTTAGAGATA+TGG + chr2_2:37439741-37439760 Msa0249760:intron 35.0%
!! ACTTATAAAACCGGCTTGTA+AGG - chr2_2:37439801-37439820 None:intergenic 35.0%
!! CCGGTTTTATAAGTTGAGTT+AGG + chr2_2:37439807-37439826 Msa0249760:intron 35.0%
GATTTGAACTCAATACCTTG+AGG + chr2_2:37439937-37439956 Msa0249760:intron 35.0%
GTTTGCATGACTATCACTAA+AGG - chr2_2:37440160-37440179 None:intergenic 35.0%
TGATTAGGGTGCAATAGAAA+TGG + chr2_2:37440238-37440257 Msa0249760:intron 35.0%
TTGGAGCTTCAACAAAATCA+CGG + chr2_2:37440462-37440481 Msa0249760:intron 35.0%
AAGTTGACTATGTGCATGTT+TGG - chr2_2:37440521-37440540 None:intergenic 35.0%
!! TACAGCTCCATTTTTCCAAA+AGG + chr2_2:37440575-37440594 Msa0249760:intron 35.0%
!! TCCGAAACCTTTTGGAAAAA+TGG - chr2_2:37440585-37440604 None:intergenic 35.0%
! ATATTTAGTGAGAGCATGGA+AGG - chr2_2:37440841-37440860 None:intergenic 35.0%
GCTGCAATTTATAGAAAGCA+CGG - chr2_2:37440984-37441003 None:intergenic 35.0%
! GACTTTAAGAAAAGATACGG+TGG + chr2_2:37441074-37441093 Msa0249760:CDS 35.0%
TTTAAGAAAAGATACGGTGG+TGG + chr2_2:37441077-37441096 Msa0249760:CDS 35.0%
TATTGCCAAAAGTCTGAACA+AGG + chr2_2:37441115-37441134 Msa0249760:CDS 35.0%
!!! GGTACTGTTTTTTTAGGAAC+AGG + chr2_2:37441358-37441377 Msa0249760:intron 35.0%
!!! GTTTTTTTAGGAACAGGACT+TGG + chr2_2:37441364-37441383 Msa0249760:intron 35.0%
! GTAGAAAATGATGGGATATC+AGG - chr2_2:37441405-37441424 None:intergenic 35.0%
AGGATCCATAATGATAACTG+TGG - chr2_2:37441427-37441446 None:intergenic 35.0%
AACATTGCAATATGTAGCAC+TGG - chr2_2:37441887-37441906 None:intergenic 35.0%
CAGTTACTCAAAGTTTCAAG+TGG - chr2_2:37442001-37442020 None:intergenic 35.0%
!! TGTTTTCAGGCTATTGATAG+AGG + chr2_2:37442177-37442196 Msa0249760:intron 35.0%
AAAACAATGCTGTCTAACCT+TGG - chr2_2:37442261-37442280 None:intergenic 35.0%
!!! TGTTTTTGGTTCTGGTTATC+TGG + chr2_2:37442417-37442436 Msa0249760:CDS 35.0%
ACATAGAAGAAAATCAACCC+AGG + chr2_2:37442734-37442753 Msa0249760:three_prime_UTR 35.0%
GCTCTGTAACTGAGTTAACT+CGG - chr2_2:37439077-37439096 None:intergenic 40.0%
! ATATACAGCTTTGTAGCTCG+TGG + chr2_2:37439118-37439137 Msa0249760:CDS 40.0%
AGGAAAGTTACCAGTGAACT+CGG - chr2_2:37439167-37439186 None:intergenic 40.0%
TTGTGTTTGTGTGTGTTGCA+TGG + chr2_2:37439317-37439336 Msa0249760:intron 40.0%
!!! GATTTTAGTGGTGGGTTTTG+TGG + chr2_2:37439458-37439477 Msa0249760:intron 40.0%
CAGCTAATAACACTTGTAGC+CGG - chr2_2:37439643-37439662 None:intergenic 40.0%
!! TCAACACAATGAAGTGTTGG+AGG - chr2_2:37439700-37439719 None:intergenic 40.0%
CACTCAACACAATGAAGTGT+TGG - chr2_2:37439703-37439722 None:intergenic 40.0%
TTCATTGTGTTGAGTGCGAA+GGG + chr2_2:37439707-37439726 Msa0249760:intron 40.0%
!! AAAACCGGCTTGTAAGGTAA+GGG - chr2_2:37439795-37439814 None:intergenic 40.0%
!! TAAAACCGGCTTGTAAGGTA+AGG - chr2_2:37439796-37439815 None:intergenic 40.0%
TGAACTCAATACCTTGAGGT+AGG + chr2_2:37439941-37439960 Msa0249760:intron 40.0%
TGACTTTGTAACCTACCTCA+AGG - chr2_2:37439955-37439974 None:intergenic 40.0%
! TCAAATGTCACTTCATGACC+AGG + chr2_2:37439987-37440006 Msa0249760:intron 40.0%
! AGCCTTGTCTGTCAATAATC+AGG + chr2_2:37440101-37440120 Msa0249760:intron 40.0%
GCCTTGTCTGTCAATAATCA+GGG + chr2_2:37440102-37440121 Msa0249760:intron 40.0%
TCCCTGATTATTGACAGACA+AGG - chr2_2:37440106-37440125 None:intergenic 40.0%
AAGGGTTAATCTTGTGTCTG+TGG + chr2_2:37440191-37440210 Msa0249760:intron 40.0%
TAGGGTGCAATAGAAATGGA+TGG + chr2_2:37440242-37440261 Msa0249760:intron 40.0%
AATGGATGGTCATTGATCAG+TGG + chr2_2:37440256-37440275 Msa0249760:intron 40.0%
!! ATTTGGATTGGCAGTGAGTT+TGG + chr2_2:37440396-37440415 Msa0249760:intron 40.0%
GAGCTGTAGAAGTAGAAAGT+TGG - chr2_2:37440563-37440582 None:intergenic 40.0%
! ACTCTCTATAAAGGCGTATC+TGG - chr2_2:37440763-37440782 None:intergenic 40.0%
!! ACGCCTTTATAGAGAGTATC+AGG + chr2_2:37440766-37440785 Msa0249760:intron 40.0%
!! CGCCTTTATAGAGAGTATCA+GGG + chr2_2:37440767-37440786 Msa0249760:intron 40.0%
TGCCCTGATACTCTCTATAA+AGG - chr2_2:37440772-37440791 None:intergenic 40.0%
! CTGCTTGCTAACAGATTCTT+TGG - chr2_2:37441021-37441040 None:intergenic 40.0%
GGATTGTAAGTTAGTAGGAC+AGG - chr2_2:37441447-37441466 None:intergenic 40.0%
CTAAAAATATGGGAGTGGAG+TGG + chr2_2:37441482-37441501 Msa0249760:intron 40.0%
! GGAGTGGATTTGATTCTGAT+AGG + chr2_2:37441498-37441517 Msa0249760:intron 40.0%
GCTCAAGATTTCAGAAAGCA+AGG + chr2_2:37442326-37442345 Msa0249760:CDS 40.0%
TTTCAGAAAGCAAGGAACAC+AGG + chr2_2:37442334-37442353 Msa0249760:CDS 40.0%
!! GTTATCTGGCTCTCTATTTG+TGG + chr2_2:37442431-37442450 Msa0249760:CDS 40.0%
! ACACTTCGTAAGTTTTCGCA+CGG + chr2_2:37442620-37442639 Msa0249760:intron 40.0%
TAGAAGAAAATCAACCCAGG+AGG + chr2_2:37442737-37442756 Msa0249760:three_prime_UTR 40.0%
AGAAGAAAATCAACCCAGGA+GGG + chr2_2:37442738-37442757 Msa0249760:three_prime_UTR 40.0%
AAAGTTTCCTACCTTGTTGC+TGG + chr2_2:37442780-37442799 Msa0249760:three_prime_UTR 40.0%
ATCTTTATCCACCAGCAACA+AGG - chr2_2:37442794-37442813 None:intergenic 40.0%
CAGATCAAACAGTCAATCAC+AGG - chr2_2:37442874-37442893 None:intergenic 40.0%
GCTCTGTAACTGAGTTAACT+CGG - chr2_2:37439077-37439096 None:intergenic 40.0%
! ATATACAGCTTTGTAGCTCG+TGG + chr2_2:37439118-37439137 Msa0249760:CDS 40.0%
AGGAAAGTTACCAGTGAACT+CGG - chr2_2:37439167-37439186 None:intergenic 40.0%
TTGTGTTTGTGTGTGTTGCA+TGG + chr2_2:37439317-37439336 Msa0249760:intron 40.0%
!!! GATTTTAGTGGTGGGTTTTG+TGG + chr2_2:37439458-37439477 Msa0249760:intron 40.0%
CAGCTAATAACACTTGTAGC+CGG - chr2_2:37439643-37439662 None:intergenic 40.0%
!! TCAACACAATGAAGTGTTGG+AGG - chr2_2:37439700-37439719 None:intergenic 40.0%
CACTCAACACAATGAAGTGT+TGG - chr2_2:37439703-37439722 None:intergenic 40.0%
TTCATTGTGTTGAGTGCGAA+GGG + chr2_2:37439707-37439726 Msa0249760:intron 40.0%
!! AAAACCGGCTTGTAAGGTAA+GGG - chr2_2:37439795-37439814 None:intergenic 40.0%
!! TAAAACCGGCTTGTAAGGTA+AGG - chr2_2:37439796-37439815 None:intergenic 40.0%
TGAACTCAATACCTTGAGGT+AGG + chr2_2:37439941-37439960 Msa0249760:intron 40.0%
TGACTTTGTAACCTACCTCA+AGG - chr2_2:37439955-37439974 None:intergenic 40.0%
! TCAAATGTCACTTCATGACC+AGG + chr2_2:37439987-37440006 Msa0249760:intron 40.0%
! AGCCTTGTCTGTCAATAATC+AGG + chr2_2:37440101-37440120 Msa0249760:intron 40.0%
GCCTTGTCTGTCAATAATCA+GGG + chr2_2:37440102-37440121 Msa0249760:intron 40.0%
TCCCTGATTATTGACAGACA+AGG - chr2_2:37440106-37440125 None:intergenic 40.0%
AAGGGTTAATCTTGTGTCTG+TGG + chr2_2:37440191-37440210 Msa0249760:intron 40.0%
TAGGGTGCAATAGAAATGGA+TGG + chr2_2:37440242-37440261 Msa0249760:intron 40.0%
AATGGATGGTCATTGATCAG+TGG + chr2_2:37440256-37440275 Msa0249760:intron 40.0%
!! ATTTGGATTGGCAGTGAGTT+TGG + chr2_2:37440396-37440415 Msa0249760:intron 40.0%
GAGCTGTAGAAGTAGAAAGT+TGG - chr2_2:37440563-37440582 None:intergenic 40.0%
! ACTCTCTATAAAGGCGTATC+TGG - chr2_2:37440763-37440782 None:intergenic 40.0%
!! ACGCCTTTATAGAGAGTATC+AGG + chr2_2:37440766-37440785 Msa0249760:intron 40.0%
!! CGCCTTTATAGAGAGTATCA+GGG + chr2_2:37440767-37440786 Msa0249760:intron 40.0%
TGCCCTGATACTCTCTATAA+AGG - chr2_2:37440772-37440791 None:intergenic 40.0%
! CTGCTTGCTAACAGATTCTT+TGG - chr2_2:37441021-37441040 None:intergenic 40.0%
GGATTGTAAGTTAGTAGGAC+AGG - chr2_2:37441447-37441466 None:intergenic 40.0%
CTAAAAATATGGGAGTGGAG+TGG + chr2_2:37441482-37441501 Msa0249760:intron 40.0%
! GGAGTGGATTTGATTCTGAT+AGG + chr2_2:37441498-37441517 Msa0249760:intron 40.0%
GCTCAAGATTTCAGAAAGCA+AGG + chr2_2:37442326-37442345 Msa0249760:CDS 40.0%
TTTCAGAAAGCAAGGAACAC+AGG + chr2_2:37442334-37442353 Msa0249760:CDS 40.0%
!! GTTATCTGGCTCTCTATTTG+TGG + chr2_2:37442431-37442450 Msa0249760:CDS 40.0%
! ACACTTCGTAAGTTTTCGCA+CGG + chr2_2:37442620-37442639 Msa0249760:intron 40.0%
TAGAAGAAAATCAACCCAGG+AGG + chr2_2:37442737-37442756 Msa0249760:three_prime_UTR 40.0%
AGAAGAAAATCAACCCAGGA+GGG + chr2_2:37442738-37442757 Msa0249760:three_prime_UTR 40.0%
AAAGTTTCCTACCTTGTTGC+TGG + chr2_2:37442780-37442799 Msa0249760:three_prime_UTR 40.0%
ATCTTTATCCACCAGCAACA+AGG - chr2_2:37442794-37442813 None:intergenic 40.0%
CAGATCAAACAGTCAATCAC+AGG - chr2_2:37442874-37442893 None:intergenic 40.0%
CTTCATTGTGTTGAGTGCGA+AGG + chr2_2:37439706-37439725 Msa0249760:intron 45.0%
TCATTGTGTTGAGTGCGAAG+GGG + chr2_2:37439708-37439727 Msa0249760:intron 45.0%
TGACAGACAAGGCTACAAGA+TGG - chr2_2:37440095-37440114 None:intergenic 45.0%
! CAGTGAGTTTGGTGGAATCA+CGG + chr2_2:37440407-37440426 Msa0249760:intron 45.0%
GTATCTGGTGAGAATGTGAG+AGG - chr2_2:37440748-37440767 None:intergenic 45.0%
GACACGTTCAAGGAAAGCAA+TGG - chr2_2:37441048-37441067 None:intergenic 45.0%
! AGTCAGCTTTGACACGTTCA+AGG - chr2_2:37441058-37441077 None:intergenic 45.0%
TCATCGACACTGCTCGAAAA+TGG - chr2_2:37441562-37441581 None:intergenic 45.0%
!! GAAGCACTGACACAGACATT+GGG + chr2_2:37441741-37441760 Msa0249760:intron 45.0%
! CTTCAAATTGAAGGCATGGC+TGG - chr2_2:37441862-37441881 None:intergenic 45.0%
GGCACTTCAAATTGAAGGCA+TGG - chr2_2:37441866-37441885 None:intergenic 45.0%
! GCACTGGCACTTCAAATTGA+AGG - chr2_2:37441871-37441890 None:intergenic 45.0%
AACTGAGCAGAGCTTTGCTT+TGG - chr2_2:37442071-37442090 None:intergenic 45.0%
TCTGATACCACATCTTCCGA+CGG - chr2_2:37442361-37442380 None:intergenic 45.0%
!! ATCTGGCTCTCTATTTGTGG+TGG + chr2_2:37442434-37442453 Msa0249760:CDS 45.0%
! AAGTTTTCGCACGGTGAAGA+TGG + chr2_2:37442629-37442648 Msa0249760:intron 45.0%
GAAGAAAATCAACCCAGGAG+GGG + chr2_2:37442739-37442758 Msa0249760:three_prime_UTR 45.0%
TTATCCACCAGCAACAAGGT+AGG - chr2_2:37442790-37442809 None:intergenic 45.0%
CTTCATTGTGTTGAGTGCGA+AGG + chr2_2:37439706-37439725 Msa0249760:intron 45.0%
TCATTGTGTTGAGTGCGAAG+GGG + chr2_2:37439708-37439727 Msa0249760:intron 45.0%
TGACAGACAAGGCTACAAGA+TGG - chr2_2:37440095-37440114 None:intergenic 45.0%
! CAGTGAGTTTGGTGGAATCA+CGG + chr2_2:37440407-37440426 Msa0249760:intron 45.0%
GTATCTGGTGAGAATGTGAG+AGG - chr2_2:37440748-37440767 None:intergenic 45.0%
GACACGTTCAAGGAAAGCAA+TGG - chr2_2:37441048-37441067 None:intergenic 45.0%
! AGTCAGCTTTGACACGTTCA+AGG - chr2_2:37441058-37441077 None:intergenic 45.0%
TCATCGACACTGCTCGAAAA+TGG - chr2_2:37441562-37441581 None:intergenic 45.0%
!! GAAGCACTGACACAGACATT+GGG + chr2_2:37441741-37441760 Msa0249760:intron 45.0%
! CTTCAAATTGAAGGCATGGC+TGG - chr2_2:37441862-37441881 None:intergenic 45.0%
GGCACTTCAAATTGAAGGCA+TGG - chr2_2:37441866-37441885 None:intergenic 45.0%
! GCACTGGCACTTCAAATTGA+AGG - chr2_2:37441871-37441890 None:intergenic 45.0%
AACTGAGCAGAGCTTTGCTT+TGG - chr2_2:37442071-37442090 None:intergenic 45.0%
TCTGATACCACATCTTCCGA+CGG - chr2_2:37442361-37442380 None:intergenic 45.0%
!! ATCTGGCTCTCTATTTGTGG+TGG + chr2_2:37442434-37442453 Msa0249760:CDS 45.0%
! AAGTTTTCGCACGGTGAAGA+TGG + chr2_2:37442629-37442648 Msa0249760:intron 45.0%
GAAGAAAATCAACCCAGGAG+GGG + chr2_2:37442739-37442758 Msa0249760:three_prime_UTR 45.0%
TTATCCACCAGCAACAAGGT+AGG - chr2_2:37442790-37442809 None:intergenic 45.0%
!!! ATTTTTTTATATTAAATTTG+GGG + chr2_2:37439852-37439871 Msa0249760:intron 5.0%
!! TATAAAATGTTTAATAATAT+GGG + chr2_2:37441202-37441221 Msa0249760:intron 5.0%
!!! ATTTTTTTATATTAAATTTG+GGG + chr2_2:37439852-37439871 Msa0249760:intron 5.0%
!! TATAAAATGTTTAATAATAT+GGG + chr2_2:37441202-37441221 Msa0249760:intron 5.0%
CTTTGTAGCTCGTGGAACGA+TGG + chr2_2:37439126-37439145 Msa0249760:CDS 50.0%
CTGAAGACACTGAGCTGCAA+TGG - chr2_2:37439191-37439210 None:intergenic 50.0%
GGTGTGATGGTCACAACTGT+AGG - chr2_2:37439242-37439261 None:intergenic 50.0%
! AGTGTTGGAGGCTGCAATGA+AGG - chr2_2:37439688-37439707 None:intergenic 50.0%
CATTGTGTTGAGTGCGAAGG+GGG + chr2_2:37439709-37439728 Msa0249760:intron 50.0%
GCTACCCTTACCTTACAAGC+CGG + chr2_2:37439788-37439807 Msa0249760:intron 50.0%
GGATGGTCATTGATCAGTGG+AGG + chr2_2:37440259-37440278 Msa0249760:intron 50.0%
!! TGGATTGGCAGTGAGTTTGG+TGG + chr2_2:37440399-37440418 Msa0249760:intron 50.0%
CAAAACTGCCAGTGTGAGGA+AGG - chr2_2:37441706-37441725 None:intergenic 50.0%
CAGACAAAACTGCCAGTGTG+AGG - chr2_2:37441710-37441729 None:intergenic 50.0%
TGTCTGTGTCAGTGCTTCGT+AGG - chr2_2:37441739-37441758 None:intergenic 50.0%
!! CGAAGCACTGACACAGACAT+TGG + chr2_2:37441740-37441759 Msa0249760:intron 50.0%
!! TGGCACTGACATGTGTGGTT+GGG - chr2_2:37441807-37441826 None:intergenic 50.0%
!! ATGGCACTGACATGTGTGGT+TGG - chr2_2:37441808-37441827 None:intergenic 50.0%
!! CAACATGGCACTGACATGTG+TGG - chr2_2:37441812-37441831 None:intergenic 50.0%
CACACATGTCAGTGCCATGT+TGG + chr2_2:37441810-37441829 Msa0249760:intron 50.0%
! GTCAGTGCCATGTTGGTGTT+TGG + chr2_2:37441817-37441836 Msa0249760:intron 50.0%
!! GTTGGTGCCAAACACCAACA+TGG - chr2_2:37441827-37441846 None:intergenic 50.0%
! GCGCACAAGTAAGTTGACCA+AGG + chr2_2:37442241-37442260 Msa0249760:intron 50.0%
ACGAAGTGTGATTCCACGTC+AGG - chr2_2:37442609-37442628 None:intergenic 50.0%
ACTAAGAAACTGCCCCTCCT+GGG - chr2_2:37442754-37442773 None:intergenic 50.0%
AACTAAGAAACTGCCCCTCC+TGG - chr2_2:37442755-37442774 None:intergenic 50.0%
AGGAGGGGCAGTTTCTTAGT+TGG + chr2_2:37442754-37442773 Msa0249760:three_prime_UTR 50.0%
GTTTCCTACCTTGTTGCTGG+TGG + chr2_2:37442783-37442802 Msa0249760:three_prime_UTR 50.0%
CTTTGTAGCTCGTGGAACGA+TGG + chr2_2:37439126-37439145 Msa0249760:CDS 50.0%
CTGAAGACACTGAGCTGCAA+TGG - chr2_2:37439191-37439210 None:intergenic 50.0%
GGTGTGATGGTCACAACTGT+AGG - chr2_2:37439242-37439261 None:intergenic 50.0%
! AGTGTTGGAGGCTGCAATGA+AGG - chr2_2:37439688-37439707 None:intergenic 50.0%
CATTGTGTTGAGTGCGAAGG+GGG + chr2_2:37439709-37439728 Msa0249760:intron 50.0%
GCTACCCTTACCTTACAAGC+CGG + chr2_2:37439788-37439807 Msa0249760:intron 50.0%
GGATGGTCATTGATCAGTGG+AGG + chr2_2:37440259-37440278 Msa0249760:intron 50.0%
!! TGGATTGGCAGTGAGTTTGG+TGG + chr2_2:37440399-37440418 Msa0249760:intron 50.0%
CAAAACTGCCAGTGTGAGGA+AGG - chr2_2:37441706-37441725 None:intergenic 50.0%
CAGACAAAACTGCCAGTGTG+AGG - chr2_2:37441710-37441729 None:intergenic 50.0%
TGTCTGTGTCAGTGCTTCGT+AGG - chr2_2:37441739-37441758 None:intergenic 50.0%
!! CGAAGCACTGACACAGACAT+TGG + chr2_2:37441740-37441759 Msa0249760:intron 50.0%
!! TGGCACTGACATGTGTGGTT+GGG - chr2_2:37441807-37441826 None:intergenic 50.0%
!! ATGGCACTGACATGTGTGGT+TGG - chr2_2:37441808-37441827 None:intergenic 50.0%
!! CAACATGGCACTGACATGTG+TGG - chr2_2:37441812-37441831 None:intergenic 50.0%
CACACATGTCAGTGCCATGT+TGG + chr2_2:37441810-37441829 Msa0249760:intron 50.0%
! GTCAGTGCCATGTTGGTGTT+TGG + chr2_2:37441817-37441836 Msa0249760:intron 50.0%
!! GTTGGTGCCAAACACCAACA+TGG - chr2_2:37441827-37441846 None:intergenic 50.0%
! GCGCACAAGTAAGTTGACCA+AGG + chr2_2:37442241-37442260 Msa0249760:intron 50.0%
ACGAAGTGTGATTCCACGTC+AGG - chr2_2:37442609-37442628 None:intergenic 50.0%
ACTAAGAAACTGCCCCTCCT+GGG - chr2_2:37442754-37442773 None:intergenic 50.0%
AACTAAGAAACTGCCCCTCC+TGG - chr2_2:37442755-37442774 None:intergenic 50.0%
AGGAGGGGCAGTTTCTTAGT+TGG + chr2_2:37442754-37442773 Msa0249760:three_prime_UTR 50.0%
GTTTCCTACCTTGTTGCTGG+TGG + chr2_2:37442783-37442802 Msa0249760:three_prime_UTR 50.0%
GCTGAGTACACCGAGTTCAC+TGG + chr2_2:37439154-37439173 Msa0249760:CDS 55.0%
AGACACTGAGCTGCAATGGC+AGG - chr2_2:37439187-37439206 None:intergenic 55.0%
AGCTGCCTAATTGCGGCGTT+TGG + chr2_2:37439658-37439677 Msa0249760:intron 55.0%
GCTGCCTAATTGCGGCGTTT+GGG + chr2_2:37439659-37439678 Msa0249760:intron 55.0%
GCAACCCAAACGCCGCAATT+AGG - chr2_2:37439666-37439685 None:intergenic 55.0%
TCCTTGCTCCTTCCTCACAC+TGG + chr2_2:37441695-37441714 Msa0249760:intron 55.0%
AGCAAGGAACACAGGTCCGT+CGG + chr2_2:37442342-37442361 Msa0249760:CDS 55.0%
GCTGAGTACACCGAGTTCAC+TGG + chr2_2:37439154-37439173 Msa0249760:CDS 55.0%
AGACACTGAGCTGCAATGGC+AGG - chr2_2:37439187-37439206 None:intergenic 55.0%
AGCTGCCTAATTGCGGCGTT+TGG + chr2_2:37439658-37439677 Msa0249760:intron 55.0%
GCTGCCTAATTGCGGCGTTT+GGG + chr2_2:37439659-37439678 Msa0249760:intron 55.0%
GCAACCCAAACGCCGCAATT+AGG - chr2_2:37439666-37439685 None:intergenic 55.0%
TCCTTGCTCCTTCCTCACAC+TGG + chr2_2:37441695-37441714 Msa0249760:intron 55.0%
AGCAAGGAACACAGGTCCGT+CGG + chr2_2:37442342-37442361 Msa0249760:CDS 55.0%
TGTGTTGAGTGCGAAGGGGG+TGG + chr2_2:37439712-37439731 Msa0249760:intron 60.0%
GCCAGTGTGAGGAAGGAGCA+AGG - chr2_2:37441699-37441718 None:intergenic 60.0%
GGCTGGTGTCTGACACGTGT+TGG - chr2_2:37441845-37441864 None:intergenic 60.0%
CACAGGTCCGTCGGAAGATG+TGG + chr2_2:37442351-37442370 Msa0249760:CDS 60.0%
TGTGTTGAGTGCGAAGGGGG+TGG + chr2_2:37439712-37439731 Msa0249760:intron 60.0%
GCCAGTGTGAGGAAGGAGCA+AGG - chr2_2:37441699-37441718 None:intergenic 60.0%
GGCTGGTGTCTGACACGTGT+TGG - chr2_2:37441845-37441864 None:intergenic 60.0%
CACAGGTCCGTCGGAAGATG+TGG + chr2_2:37442351-37442370 Msa0249760:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 37438874 37442956 37438874 ID=Msa0249760;Name=Msa0249760
chr2_2 mRNA 37438874 37442956 37438874 ID=Msa0249760-mRNA-1;Parent=Msa0249760;Name=Msa0249760-mRNA-1;_AED=0.20;_eAED=0.20;_QI=226|1|1|1|0.8|0.66|6|450|221
chr2_2 exon 37438874 37439289 37438874 ID=Msa0249760-mRNA-1:exon:11790;Parent=Msa0249760-mRNA-1
chr2_2 exon 37441003 37441144 37441003 ID=Msa0249760-mRNA-1:exon:11791;Parent=Msa0249760-mRNA-1
chr2_2 exon 37441238 37441358 37441238 ID=Msa0249760-mRNA-1:exon:11792;Parent=Msa0249760-mRNA-1
chr2_2 exon 37442186 37442248 37442186 ID=Msa0249760-mRNA-1:exon:11793;Parent=Msa0249760-mRNA-1
chr2_2 exon 37442326 37442599 37442326 ID=Msa0249760-mRNA-1:exon:11794;Parent=Msa0249760-mRNA-1
chr2_2 exon 37442631 37442956 37442631 ID=Msa0249760-mRNA-1:exon:11795;Parent=Msa0249760-mRNA-1
chr2_2 five_prime_UTR 37438874 37439099 37438874 ID=Msa0249760-mRNA-1:five_prime_utr;Parent=Msa0249760-mRNA-1
chr2_2 CDS 37439100 37439289 37439100 ID=Msa0249760-mRNA-1:cds;Parent=Msa0249760-mRNA-1
chr2_2 CDS 37441003 37441144 37441003 ID=Msa0249760-mRNA-1:cds;Parent=Msa0249760-mRNA-1
chr2_2 CDS 37441238 37441358 37441238 ID=Msa0249760-mRNA-1:cds;Parent=Msa0249760-mRNA-1
chr2_2 CDS 37442186 37442248 37442186 ID=Msa0249760-mRNA-1:cds;Parent=Msa0249760-mRNA-1
chr2_2 CDS 37442326 37442475 37442326 ID=Msa0249760-mRNA-1:cds;Parent=Msa0249760-mRNA-1
chr2_2 three_prime_UTR 37442476 37442599 37442476 ID=Msa0249760-mRNA-1:three_prime_utr;Parent=Msa0249760-mRNA-1
chr2_2 three_prime_UTR 37442631 37442956 37442631 ID=Msa0249760-mRNA-1:three_prime_utr;Parent=Msa0249760-mRNA-1
Gene Sequence

>Msa0249760

ATGAGTCAAGAATCGTTCATATACAGCTTTGTAGCTCGTGGAACGATGGTGTTAGCTGAGTACACCGAGTTCACTGGTAACTTTCCTGCCATTGCAGCTCAGTGTCTTCAGAAACTACCTTCTTCCAATAACAAGTTCACCTACAGTTGTGACCATCACACCTTCAATTTTCTTGTCGAAGATGGTTATGCTTATTGTGTTGTTGCCAAAGAATCTGTTAGCAAGCAGATCTCCATTGCTTTCCTTGAACGTGTCAAAGCTGACTTTAAGAAAAGATACGGTGGTGGAAAAGCAGATACAGCTATTGCCAAAAGTCTGAACAAGGAATTTGGACCGATTATGAAAGAGCACATGAAGTATATCATTGATCATGCCGAAGAGATTGAAAAGCTATTAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGCATCATGTTAGAAAATATAGACAAGGCTATTGATAGAGGAGAAAATTTAACTGTTCTTTCAGACAAGACTGAGACATTGCGCGCACAAGCTCAAGATTTCAGAAAGCAAGGAACACAGGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTCTGTTGTTTTTGGTTCTGGTTATCTGGCTCTCTATTTGTGGTGGATTTAACTGTTCAAATTAG
Protein sequence

>Msa0249760

MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYSCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPIMKEHMKYIIDHAEEIEKLLKVKAQVSEVKSIMLENIDKAIDRGENLTVLSDKTETLRAQAQDFRKQGTQVRRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFNCSN*