AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1011510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011510 MtrunA17_Chr7g0223171 96.364 55 2 0 1 55 1 55 5.71e-34 109
Msa1011510 MtrunA17_Chr8g0376211 84.314 51 8 0 1 51 1 51 1.47e-28 95.9
Msa1011510 MtrunA17_Chr8g0376251 84.314 51 8 0 1 51 1 51 1.47e-28 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1011510 AT1G06515.1 63.636 55 16 1 1 51 1 55 4.75e-19 72.4
Msa1011510 AT1G06515.2 63.636 55 16 1 1 51 1 55 4.75e-19 72.4
Msa1011510 AT2G30942.1 60.000 55 18 1 1 51 1 55 1.74e-17 68.2

Find 31 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAAGCTGTCAAAATAAT+TGG 0.107007 7_1:-15869044 Msa1011510:three_prime_UTR
CTTAACTATTACAGATATTT+TGG 0.137656 7_1:-15870084 Msa1011510:intron
CACCTTTACAATGTTACTTT+TGG 0.153503 7_1:-15870413 Msa1011510:CDS
ACAGATCATTCAACATTTAT+TGG 0.178417 7_1:-15873009 Msa1011510:five_prime_UTR
ATATTCCTACATAGCGATTA+TGG 0.187438 7_1:+15868842 None:intergenic
TGAACTACCTCTTGAAGAAT+TGG 0.287014 7_1:+15870024 None:intergenic
CATCTTGTAGCAGTTTGATA+TGG 0.328300 7_1:-15869083 Msa1011510:three_prime_UTR
TTAAAGCTGTCAAAATAATT+GGG 0.384078 7_1:-15869043 Msa1011510:three_prime_UTR
GGCTTTATATGCTGGATTGG+TGG 0.387109 7_1:-15870391 Msa1011510:CDS
CAGTTGTGGAAGTCATGAAT+TGG 0.399034 7_1:-15870451 Msa1011510:exon
CTTGCCCATAATCGCTATGT+AGG 0.421168 7_1:-15868847 Msa1011510:three_prime_UTR
TATTCCTACATAGCGATTAT+GGG 0.422622 7_1:+15868843 None:intergenic
TTGGGCTTTATATGCTGGAT+TGG 0.428670 7_1:-15870394 Msa1011510:CDS
AAAAGTTGAATGTGGAAGGT+TGG 0.434716 7_1:-15868788 Msa1011510:three_prime_UTR
GCTTTATATGCTGGATTGGT+GGG 0.445941 7_1:-15870390 Msa1011510:CDS
CATGAATTGGGTTCAGCAAA+AGG 0.457099 7_1:-15870438 Msa1011510:CDS
AAATCTCATGCGATCGCACC+AGG 0.500256 7_1:-15872979 Msa1011510:intron
GAACTACCTCTTGAAGAATT+GGG 0.501709 7_1:+15870025 None:intergenic
ATTTAAATGCCACATATCTC+CGG 0.509605 7_1:-15869214 Msa1011510:exon
CCAATGTAGTTCTTCACTTG+AGG 0.512429 7_1:-15869161 Msa1011510:three_prime_UTR
GCTTTAAGAAACTCTCAAGT+TGG 0.513976 7_1:+15869059 None:intergenic
TATTTAAATAAGATTCATGA+TGG 0.523065 7_1:+15869000 None:intergenic
GCCCAAAAGTAACATTGTAA+AGG 0.523226 7_1:+15870411 None:intergenic
AGTTGTGGAAGTCATGAATT+GGG 0.531926 7_1:-15870450 Msa1011510:exon
ATTTAAATTAGTTGCAGCAG+TGG 0.537538 7_1:-15869138 Msa1011510:three_prime_UTR
TTGCTTCTACCGGAGATATG+TGG 0.545157 7_1:+15869205 None:intergenic
AGTTGCAGCAGTGGTGTGTA+TGG 0.547025 7_1:-15869129 Msa1011510:three_prime_UTR
CAAAAGTAACATTGTAAAGG+TGG 0.589878 7_1:+15870414 None:intergenic
ACATTACCCAATTCTTCAAG+AGG 0.594314 7_1:-15870031 Msa1011510:intron
CCTCAAGTGAAGAACTACAT+TGG 0.594443 7_1:+15869161 None:intergenic
GAAAATGAATCTACTTGACA+CGG 0.655414 7_1:+15868869 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTCTTTTATGTTATT+TGG - chr7_1:15869287-15869306 Msa1011510:intron 10.0%
!! TATAGGATAATAAATTATTA+AGG + chr7_1:15872428-15872447 None:intergenic 10.0%
!!! AATATTTTTGACATTATTAT+TGG - chr7_1:15872960-15872979 Msa1011510:intron 10.0%
!! GAAAGAAAAATTAATTTAAG+AGG + chr7_1:15869020-15869039 None:intergenic 15.0%
!!! ATAGTTTTTGTAATTTAAGT+TGG - chr7_1:15870055-15870074 Msa1011510:CDS 15.0%
!!! TAGTTTTTGTAATTTAAGTT+GGG - chr7_1:15870056-15870075 Msa1011510:CDS 15.0%
!! TAAAATACAAATACTTAATG+AGG + chr7_1:15870352-15870371 None:intergenic 15.0%
!!! TTGTGTAATCTTTAATTTTT+AGG - chr7_1:15871240-15871259 Msa1011510:intron 15.0%
!!! ACTGCAAAAAATATATTTTT+GGG + chr7_1:15871474-15871493 None:intergenic 15.0%
!!! AACTGCAAAAAATATATTTT+TGG + chr7_1:15871475-15871494 None:intergenic 15.0%
!! TATTTAAATAAGATTCATGA+TGG + chr7_1:15872944-15872963 None:intergenic 15.0%
!!! ATTATTTGTTGTTTTGTTGA+TGG + chr7_1:15868783-15868802 None:intergenic 20.0%
!! AATGTTTGTTTGATACAAAA+TGG - chr7_1:15869175-15869194 Msa1011510:three_prime_UTR 20.0%
!! GAAAACTTTGATTCTTAAAA+AGG + chr7_1:15869379-15869398 None:intergenic 20.0%
!! ACAAATTACAGAATGAAAAA+TGG - chr7_1:15869556-15869575 Msa1011510:intron 20.0%
!!! TTTAAAACTATTGTTTTTGC+AGG + chr7_1:15869700-15869719 None:intergenic 20.0%
!! GAAAATATCACATCTAATAA+GGG + chr7_1:15869945-15869964 None:intergenic 20.0%
!! AGAAAATATCACATCTAATA+AGG + chr7_1:15869946-15869965 None:intergenic 20.0%
!!! ATTAGATGTGATATTTTCTT+AGG - chr7_1:15869947-15869966 Msa1011510:intron 20.0%
!! GAGTAATGAACATAATTAAA+AGG + chr7_1:15870211-15870230 None:intergenic 20.0%
!!! TTACTCTTTGATTTTGTAAT+TGG - chr7_1:15870225-15870244 Msa1011510:intron 20.0%
!!! TTTTGCATTTCTATATATAC+TGG - chr7_1:15871410-15871429 Msa1011510:intron 20.0%
!!! CTGCAAAAAATATATTTTTG+GGG + chr7_1:15871473-15871492 None:intergenic 20.0%
!!! AAATATATTTTTTGCAGTTG+TGG - chr7_1:15871476-15871495 Msa1011510:intron 20.0%
!!! TGGTTAAAGAAATAGTTTTA+AGG + chr7_1:15871659-15871678 None:intergenic 20.0%
!! ACCATGATAGTTATTTATAT+AGG - chr7_1:15871675-15871694 Msa1011510:intron 20.0%
!! CCATGATAGTTATTTATATA+GGG - chr7_1:15871676-15871695 Msa1011510:intron 20.0%
!! CAAAATATCTGTAATAGTTA+AGG + chr7_1:15871859-15871878 None:intergenic 20.0%
!!! CTTAACTATTACAGATATTT+TGG - chr7_1:15871857-15871876 Msa1011510:intron 20.0%
!!! GAAGAGTTCTAATTTTATAT+AGG + chr7_1:15871950-15871969 None:intergenic 20.0%
!! AGTCAATACATAAATGTAAA+TGG + chr7_1:15872003-15872022 None:intergenic 20.0%
!!! TCGTTTTCTTAAATTATTAC+CGG - chr7_1:15872554-15872573 Msa1011510:intron 20.0%
!! AATAATACACACTTTAGATA+GGG + chr7_1:15872681-15872700 None:intergenic 20.0%
!! AAATAATACACACTTTAGAT+AGG + chr7_1:15872682-15872701 None:intergenic 20.0%
!! TTAAAGCTGTCAAAATAATT+GGG - chr7_1:15872898-15872917 Msa1011510:intron 20.0%
!!! AATCTTTCTTTTTCACTTCA+CGG - chr7_1:15868850-15868869 Msa1011510:three_prime_UTR 25.0%
! ACAGATCATTCAACATTTAT+TGG - chr7_1:15868932-15868951 Msa1011510:three_prime_UTR 25.0%
! AAAATTAAAGTAATCGCAGT+GGG + chr7_1:15869259-15869278 None:intergenic 25.0%
! AAAAATTAAAGTAATCGCAG+TGG + chr7_1:15869260-15869279 None:intergenic 25.0%
!!! GTTAAACATTTTAACCTTCA+AGG + chr7_1:15869357-15869376 None:intergenic 25.0%
! TATAAGTGTGTATGAAATGA+AGG - chr7_1:15869653-15869672 Msa1011510:intron 25.0%
!!! TTGTAATTGTTTCTACTAAC+TGG + chr7_1:15870022-15870041 None:intergenic 25.0%
! ATTAAGACTTCTTTCTGAAT+TGG - chr7_1:15870165-15870184 Msa1011510:intron 25.0%
! AATATGACATGTCTTTAAGT+CGG - chr7_1:15870453-15870472 Msa1011510:intron 25.0%
!! GAATGTATTGTTTTCAGATT+CGG + chr7_1:15870524-15870543 None:intergenic 25.0%
! TTTAACATAACTAGCGTATT+TGG - chr7_1:15870608-15870627 Msa1011510:intron 25.0%
! CAGTTTCAACAATTCTTTAT+TGG + chr7_1:15870682-15870701 None:intergenic 25.0%
! TGCTATTGAGAATTCAAATT+AGG - chr7_1:15870900-15870919 Msa1011510:intron 25.0%
!!! ACCTTTACAATGTTACTTTT+GGG - chr7_1:15871529-15871548 Msa1011510:intron 25.0%
! TGTAGAAGAAAGTGAAATAA+AGG + chr7_1:15871596-15871615 None:intergenic 25.0%
! CCCTATATAAATAACTATCA+TGG + chr7_1:15871679-15871698 None:intergenic 25.0%
!!! TGCTACTTCTAAGATTATAA+AGG + chr7_1:15872156-15872175 None:intergenic 25.0%
! ATTAAAAACTCGAGCTTAAT+TGG + chr7_1:15872180-15872199 None:intergenic 25.0%
! CTTCATTTACATTTACATAC+AGG + chr7_1:15872259-15872278 None:intergenic 25.0%
! ATAATACACACTTTAGATAG+GGG + chr7_1:15872680-15872699 None:intergenic 25.0%
! GTGTGTATTATTTAAATGTC+AGG - chr7_1:15872689-15872708 Msa1011510:intron 25.0%
! CTTAAAGCTGTCAAAATAAT+TGG - chr7_1:15872897-15872916 Msa1011510:intron 25.0%
!!! AAGCTACAGTTCATATTTTT+TGG - chr7_1:15873125-15873144 Msa1011510:five_prime_UTR 25.0%
! TGGTTTAAAAAAGTTGAATG+TGG - chr7_1:15873145-15873164 Msa1011510:five_prime_UTR 25.0%
! TTAAAAAAGTTGAATGTGGA+AGG - chr7_1:15873149-15873168 Msa1011510:five_prime_UTR 25.0%
!! ATCTTTCTTTTTCACTTCAC+GGG - chr7_1:15868851-15868870 Msa1011510:three_prime_UTR 30.0%
!! ATCAACTGATTTTCTAACGA+AGG - chr7_1:15869124-15869143 Msa1011510:three_prime_UTR 30.0%
!! TCAACTGATTTTCTAACGAA+GGG - chr7_1:15869125-15869144 Msa1011510:three_prime_UTR 30.0%
TCAAAATGTTCTAACCTTGA+AGG - chr7_1:15869340-15869359 Msa1011510:intron 30.0%
!! AAACAGAAGTGTTTGTATGT+GGG - chr7_1:15869593-15869612 Msa1011510:intron 30.0%
! GAAATGAAGGCATATATGTT+TGG - chr7_1:15869666-15869685 Msa1011510:intron 30.0%
TGTCTTAATAAGTGCATGTT+TGG + chr7_1:15869829-15869848 None:intergenic 30.0%
AGAAAATGATACGTTTCTGT+CGG - chr7_1:15869917-15869936 Msa1011510:intron 30.0%
GAAACAATTACAAGCATCAA+AGG - chr7_1:15870029-15870048 Msa1011510:intron 30.0%
TGAATTGGTATTAACTTAGC+TGG - chr7_1:15870180-15870199 Msa1011510:intron 30.0%
AAAACATTATTCCACTCGTT+AGG + chr7_1:15870321-15870340 None:intergenic 30.0%
TAATAGCGATTCATATACTC+CGG - chr7_1:15870370-15870389 Msa1011510:intron 30.0%
ATATGACATGTCTTTAAGTC+GGG - chr7_1:15870454-15870473 Msa1011510:intron 30.0%
AACAATACATTCAAGAGCTT+AGG - chr7_1:15870532-15870551 Msa1011510:intron 30.0%
GATCCATAATTTGATTGAAG+CGG - chr7_1:15870656-15870675 Msa1011510:intron 30.0%
! ACATCAAATGTGCTTAGTTT+TGG - chr7_1:15870829-15870848 Msa1011510:intron 30.0%
!!! ATGGTTTTTTTCCATTAGTC+AGG + chr7_1:15871074-15871093 None:intergenic 30.0%
TGACGAATGAGGAATAATTA+TGG + chr7_1:15871093-15871112 None:intergenic 30.0%
TTGTATCCATCATTAATGCA+TGG - chr7_1:15871292-15871311 Msa1011510:intron 30.0%
CAAAAGTAACATTGTAAAGG+TGG + chr7_1:15871530-15871549 None:intergenic 30.0%
!!! CACCTTTACAATGTTACTTT+TGG - chr7_1:15871528-15871547 Msa1011510:intron 30.0%
!!! TAGTTTTAAGGTAACTACGA+AGG + chr7_1:15871647-15871666 None:intergenic 30.0%
TGTTTGTGCTAAATAGGTAT+AGG + chr7_1:15872445-15872464 None:intergenic 30.0%
! TTGAAGTGTTTGTGCTAAAT+AGG + chr7_1:15872451-15872470 None:intergenic 30.0%
AGCACAAACACTTCAATTAA+AGG - chr7_1:15872455-15872474 Msa1011510:intron 30.0%
ATTTAAATGCCACATATCTC+CGG - chr7_1:15872727-15872746 Msa1011510:intron 30.0%
! GAAAATGATTTTGCTTCTAC+CGG + chr7_1:15872749-15872768 None:intergenic 30.0%
ATTTAAATTAGTTGCAGCAG+TGG - chr7_1:15872803-15872822 Msa1011510:intron 30.0%
GAAAATGAATCTACTTGACA+CGG + chr7_1:15873075-15873094 None:intergenic 30.0%
TATTCCTACATAGCGATTAT+GGG + chr7_1:15873101-15873120 None:intergenic 30.0%
ATATTCCTACATAGCGATTA+TGG + chr7_1:15873102-15873121 None:intergenic 30.0%
!! TCTTTCTTTTTCACTTCACG+GGG - chr7_1:15868852-15868871 Msa1011510:three_prime_UTR 35.0%
CCATATGATTGTTTCAGTCA+GGG + chr7_1:15869460-15869479 None:intergenic 35.0%
ATCCTCCAATATCTAGGAAA+GGG + chr7_1:15869527-15869546 None:intergenic 35.0%
AATCCTCCAATATCTAGGAA+AGG + chr7_1:15869528-15869547 None:intergenic 35.0%
GTCTTAATCCTCCAATATCT+AGG + chr7_1:15869533-15869552 None:intergenic 35.0%
!! GAAACAGAAGTGTTTGTATG+TGG - chr7_1:15869592-15869611 Msa1011510:intron 35.0%
AACCCAACGTAAACAATGAT+TGG - chr7_1:15869718-15869737 Msa1011510:intron 35.0%
CTCCAATCATTGTTTACGTT+GGG + chr7_1:15869723-15869742 None:intergenic 35.0%
ACTGAACGAAAGGTCAAAAT+AGG + chr7_1:15869802-15869821 None:intergenic 35.0%
TAGCTGGTTACATGGATAAT+GGG + chr7_1:15869878-15869897 None:intergenic 35.0%
TTCTTTACTAGCTGGTTACA+TGG + chr7_1:15869886-15869905 None:intergenic 35.0%
TTCAACGTTTCTTTACTAGC+TGG + chr7_1:15869894-15869913 None:intergenic 35.0%
TATTATCTCCAAAGTTGTCC+TGG - chr7_1:15870112-15870131 Msa1011510:intron 35.0%
TAGGCATAAGCTGTAAAGTA+TGG + chr7_1:15870302-15870321 None:intergenic 35.0%
ACATTCAAGAGCTTAGGATT+TGG - chr7_1:15870538-15870557 Msa1011510:intron 35.0%
!! GAGCAATGATTTGTTTGTGT+TGG - chr7_1:15870701-15870720 Msa1011510:intron 35.0%
CAATGCCACATCAAATAAGA+GGG + chr7_1:15870727-15870746 None:intergenic 35.0%
ACAATGCCACATCAAATAAG+AGG + chr7_1:15870728-15870747 None:intergenic 35.0%
AATTATTCCTCATTCGTCAG+TGG - chr7_1:15871094-15871113 Msa1011510:intron 35.0%
ATTATTCCTCATTCGTCAGT+GGG - chr7_1:15871095-15871114 Msa1011510:intron 35.0%
AGTTGTGGAAGTCATGAATT+GGG - chr7_1:15871491-15871510 Msa1011510:intron 35.0%
GCCCAAAAGTAACATTGTAA+AGG + chr7_1:15871533-15871552 None:intergenic 35.0%
!! TACTTTTGGGCTTTATATGC+TGG - chr7_1:15871542-15871561 Msa1011510:intron 35.0%
ACGAAGGTAAAGACATCTTA+AGG + chr7_1:15871631-15871650 None:intergenic 35.0%
! TGCTAATGTGTTTTGTAGTG+CGG - chr7_1:15871886-15871905 Msa1011510:intron 35.0%
ACATTACCCAATTCTTCAAG+AGG - chr7_1:15871910-15871929 Msa1011510:intron 35.0%
GAACTACCTCTTGAAGAATT+GGG + chr7_1:15871919-15871938 None:intergenic 35.0%
TGAACTACCTCTTGAAGAAT+TGG + chr7_1:15871920-15871939 None:intergenic 35.0%
TTACATTTACATACAGGCTG+AGG + chr7_1:15872253-15872272 None:intergenic 35.0%
ACAATGTTGAAGTGAAGACT+CGG + chr7_1:15872361-15872380 None:intergenic 35.0%
! AATATCATGCTGGTCTAGTA+TGG + chr7_1:15872393-15872412 None:intergenic 35.0%
ATACTAGACCAGCATGATAT+TGG - chr7_1:15872392-15872411 Msa1011510:intron 35.0%
TACTAGACCAGCATGATATT+GGG - chr7_1:15872393-15872412 Msa1011510:intron 35.0%
AAAAGATCCCAATATCATGC+TGG + chr7_1:15872403-15872422 None:intergenic 35.0%
!! ACTTCAATTAAAGGCATCTC+TGG - chr7_1:15872464-15872483 Msa1011510:intron 35.0%
GTTATGTGTCATGTAAGTGT+CGG + chr7_1:15872510-15872529 None:intergenic 35.0%
ACACTTTAGATAGGGGAAAA+AGG + chr7_1:15872673-15872692 None:intergenic 35.0%
CATCTTGTAGCAGTTTGATA+TGG - chr7_1:15872858-15872877 Msa1011510:intron 35.0%
!! GCTTTAAGAAACTCTCAAGT+TGG + chr7_1:15872885-15872904 None:intergenic 35.0%
AAAAGTTGAATGTGGAAGGT+TGG - chr7_1:15873153-15873172 Msa1011510:five_prime_UTR 35.0%
GATACAAAATGGTCGCATAG+CGG - chr7_1:15869186-15869205 Msa1011510:three_prime_UTR 40.0%
CCCTGACTGAAACAATCATA+TGG - chr7_1:15869457-15869476 Msa1011510:intron 40.0%
GCCATATGATTGTTTCAGTC+AGG + chr7_1:15869461-15869480 None:intergenic 40.0%
TCCTCCAATATCTAGGAAAG+GGG + chr7_1:15869526-15869545 None:intergenic 40.0%
CCTCCAATCATTGTTTACGT+TGG + chr7_1:15869724-15869743 None:intergenic 40.0%
CCAACGTAAACAATGATTGG+AGG - chr7_1:15869721-15869740 Msa1011510:intron 40.0%
!! ACATGGATAATGGGAGAATG+AGG + chr7_1:15869869-15869888 None:intergenic 40.0%
CTAGCTGGTTACATGGATAA+TGG + chr7_1:15869879-15869898 None:intergenic 40.0%
TACACAATCCAGGACAACTT+TGG + chr7_1:15870123-15870142 None:intergenic 40.0%
AGCGATCTTATACACAATCC+AGG + chr7_1:15870133-15870152 None:intergenic 40.0%
TTTCAGATTCGGATGCATGA+TGG + chr7_1:15870513-15870532 None:intergenic 40.0%
TGGTTTATGTCAAATCAGCG+AGG - chr7_1:15870628-15870647 Msa1011510:intron 40.0%
TGGCCGCTTCAATCAAATTA+TGG + chr7_1:15870662-15870681 None:intergenic 40.0%
AGTGTGAGGAAAACAATGTC+TGG - chr7_1:15870863-15870882 Msa1011510:intron 40.0%
! TGATTTGCGATTCACTTAGC+TGG - chr7_1:15870932-15870951 Msa1011510:intron 40.0%
CAGGCATAAGCTGTAAAGTA+TGG + chr7_1:15871055-15871074 None:intergenic 40.0%
TACAGCTTATGCCTGACTAA+TGG - chr7_1:15871060-15871079 Msa1011510:intron 40.0%
AGTCTACCACAGATGGTTAT+TGG - chr7_1:15871168-15871187 Msa1011510:intron 40.0%
CTCAAGCCATGCATTAATGA+TGG + chr7_1:15871301-15871320 None:intergenic 40.0%
CAGTTGTGGAAGTCATGAAT+TGG - chr7_1:15871490-15871509 Msa1011510:intron 40.0%
CATGAATTGGGTTCAGCAAA+AGG - chr7_1:15871503-15871522 Msa1011510:intron 40.0%
! TTGGGCTTTATATGCTGGAT+TGG - chr7_1:15871547-15871566 Msa1011510:intron 40.0%
!! GCTTTATATGCTGGATTGGT+GGG - chr7_1:15871551-15871570 Msa1011510:intron 40.0%
CGTGAAAAACTCGAGCAATA+AGG - chr7_1:15872083-15872102 Msa1011510:intron 40.0%
CAACACTAATACGTAGACAC+CGG + chr7_1:15872576-15872595 None:intergenic 40.0%
CCTCAAGTGAAGAACTACAT+TGG + chr7_1:15872783-15872802 None:intergenic 40.0%
CCAATGTAGTTCTTCACTTG+AGG - chr7_1:15872780-15872799 Msa1011510:intron 40.0%
GCGTTAGACTCCGAATCTAA+AGG - chr7_1:15869219-15869238 Msa1011510:exon 45.0%
ACTCCGAATCTAAAGGTCGT+GGG - chr7_1:15869226-15869245 Msa1011510:exon 45.0%
GAACCCACGACCTTTAGATT+CGG + chr7_1:15869232-15869251 None:intergenic 45.0%
! GGAAAGGGGCTCTAGTAATT+TGG + chr7_1:15869512-15869531 None:intergenic 45.0%
AGAGCCCCTTTCCTAGATAT+TGG - chr7_1:15869519-15869538 Msa1011510:intron 45.0%
GTTTGGATGCACTGAACGAA+AGG + chr7_1:15869812-15869831 None:intergenic 45.0%
ATTTAAGCGAGCTGCAGCTT+AGG + chr7_1:15870267-15870286 None:intergenic 45.0%
TACAGCTTATGCCTAACGAG+TGG - chr7_1:15870307-15870326 Msa1011510:intron 45.0%
AGTCTGCCACAGATGGTTAT+TGG - chr7_1:15870409-15870428 Msa1011510:CDS 45.0%
GACACACCAATAACCATCTG+TGG + chr7_1:15870418-15870437 None:intergenic 45.0%
! GTTGGCCCTCTTATTTGATG+TGG - chr7_1:15870719-15870738 Msa1011510:intron 45.0%
TGATGTGGCATTGTCTTGAC+TGG - chr7_1:15870734-15870753 Msa1011510:intron 45.0%
!! TGGAGTTCAAGTTGAGTGTG+AGG - chr7_1:15870849-15870868 Msa1011510:intron 45.0%
CAAATACCCACTGACGAATG+AGG + chr7_1:15871104-15871123 None:intergenic 45.0%
GGCAATAGTCTCGGAGTATA+TGG + chr7_1:15871142-15871161 None:intergenic 45.0%
ACTTGCTCAGGCAATAGTCT+CGG + chr7_1:15871151-15871170 None:intergenic 45.0%
GACACACCAATAACCATCTG+TGG + chr7_1:15870418-15870437 None:intergenic 45.0%
! GGCTTTATATGCTGGATTGG+TGG - chr7_1:15871550-15871569 Msa1011510:intron 45.0%
! TGCTCGAGTTTTTCACGAAG+AGG + chr7_1:15872080-15872099 None:intergenic 45.0%
GTTGTGTTCGTTCAGACTGT+CGG - chr7_1:15872592-15872611 Msa1011510:intron 45.0%
TTGCTTCTACCGGAGATATG+TGG + chr7_1:15872739-15872758 None:intergenic 45.0%
CTTGCCCATAATCGCTATGT+AGG - chr7_1:15873094-15873113 Msa1011510:five_prime_UTR 45.0%
AAATCTCATGCGATCGCACC+AGG - chr7_1:15868962-15868981 Msa1011510:three_prime_UTR 50.0%
! AAAATGGTCGCATAGCGGAG+TGG - chr7_1:15869191-15869210 Msa1011510:three_prime_UTR 50.0%
GACTCCGAATCTAAAGGTCG+TGG - chr7_1:15869225-15869244 Msa1011510:exon 50.0%
GCCCCTTTCCTAGATATTGG+AGG - chr7_1:15869522-15869541 Msa1011510:intron 50.0%
! ACTTGCTAAGGCAACAGAGC+CGG + chr7_1:15870392-15870411 None:intergenic 50.0%
!! CATCTGTGGCAGACTTGCTA+AGG + chr7_1:15870404-15870423 None:intergenic 50.0%
CTTAGCAAGTCTGCCACAGA+TGG - chr7_1:15870402-15870421 Msa1011510:CDS 50.0%
! CATCTGTGGTAGACTTGCTC+AGG + chr7_1:15871163-15871182 None:intergenic 50.0%
CTGAGCAAGTCTACCACAGA+TGG - chr7_1:15871161-15871180 Msa1011510:intron 50.0%
AGTTGCAGCAGTGGTGTGTA+TGG - chr7_1:15872812-15872831 Msa1011510:intron 50.0%
CGCGTGCGTGCGTGCGTACC+TGG + chr7_1:15868983-15869002 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 15868778 15873185 15868778 ID=Msa1011510;Name=Msa1011510
chr7_1 mRNA 15868778 15873185 15868778 ID=Msa1011510-mRNA-1;Parent=Msa1011510;Name=Msa1011510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=217|1|1|1|0|0|4|453|55
chr7_1 exon 15868778 15869252 15868778 ID=Msa1011510-mRNA-1:exon:4079;Parent=Msa1011510-mRNA-1
chr7_1 exon 15870032 15870092 15870032 ID=Msa1011510-mRNA-1:exon:4078;Parent=Msa1011510-mRNA-1
chr7_1 exon 15870375 15870470 15870375 ID=Msa1011510-mRNA-1:exon:4077;Parent=Msa1011510-mRNA-1
chr7_1 exon 15872980 15873185 15872980 ID=Msa1011510-mRNA-1:exon:4076;Parent=Msa1011510-mRNA-1
chr7_1 five_prime_UTR 15872980 15873185 15872980 ID=Msa1011510-mRNA-1:five_prime_utr;Parent=Msa1011510-mRNA-1
chr7_1 five_prime_UTR 15870460 15870470 15870460 ID=Msa1011510-mRNA-1:five_prime_utr;Parent=Msa1011510-mRNA-1
chr7_1 CDS 15870375 15870459 15870375 ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1 CDS 15870032 15870092 15870032 ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1 CDS 15869231 15869252 15869231 ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1 three_prime_UTR 15868778 15869230 15868778 ID=Msa1011510-mRNA-1:three_prime_utr;Parent=Msa1011510-mRNA-1
Gene Sequence

>Msa1011510

ATGAATTGGGTTCAGCAAAAGGTCCACCTTTACAATGTTACTTTTGGGCTTTATATGCTGGATTGGTGGGAGCGTTGTTCATTCAATATTTTGGTGATTGTGCTAATGTGTTTTGTAGTGCGGTACATTACCCAATTCTTCAAGAGGTATATATTGTGTATTATTTAA
Protein sequence

>Msa1011510

MNWVQQKVHLYNVTFGLYMLDWWERCSFNILVIVLMCFVVRYITQFFKRYILCII*