AlfalfaGEDB | Msa1011510

M. sativa cultivar zhongmu-4 / Msa1011510

KEGG: -
GO: -
PFAM: PF11779.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011510	RHN44783.1	96.364	55	2	0	1	55	1	55	6.21e-30	109

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011510	A0A396GWA0	96.364	55	2	0	1	55	1	55	2.96e-30	109

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0020390	Msa1011510	0.812578	3.950822e-51	-8.615850e-47
Msa0023440	Msa1011510	0.823769	1.158910e-53	-8.615850e-47
Msa0031820	Msa1011510	0.819808	9.562463e-53	-8.615850e-47
Msa0033880	Msa1011510	0.816333	5.838416e-52	-8.615850e-47
Msa0055100	Msa1011510	0.819417	1.174433e-52	-8.615850e-47
Msa0061970	Msa1011510	0.800557	1.363137e-48	-8.615850e-47
Msa0074750	Msa1011510	0.812399	4.322575e-51	-8.615850e-47
Msa0077900	Msa1011510	0.807670	4.512377e-50	-8.615850e-47
Msa0081650	Msa1011510	0.828245	1.000731e-54	-8.615850e-47
Msa0085370	Msa1011510	0.831377	1.727797e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011510	MtrunA17_Chr7g0223171	96.364	55	2	1	55	1	55	5.71e-34	109
Msa1011510	MtrunA17_Chr8g0376211	84.314	51	8	1	51	1	51	1.47e-28	95.9
Msa1011510	MtrunA17_Chr8g0376251	84.314	51	8	1	51	1	51	1.47e-28	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011510	AT1G06515.1	63.636	55	16	1	1	51	1	55	4.75e-19	72.4
Msa1011510	AT1G06515.2	63.636	55	16	1	1	51	1	55	4.75e-19	72.4
Msa1011510	AT2G30942.1	60.000	55	18	1	1	51	1	55	1.74e-17	68.2

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Find 31 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGAATGTGGAAGGT+TGG	0.434716	7_1:-15868788	Msa1011510:three_prime_UTR
AAATCTCATGCGATCGCACC+AGG	0.500256	7_1:-15872979	Msa1011510:intron
ACAGATCATTCAACATTTAT+TGG	0.178417	7_1:-15873009	Msa1011510:five_prime_UTR
ACATTACCCAATTCTTCAAG+AGG	0.594314	7_1:-15870031	Msa1011510:intron
AGTTGCAGCAGTGGTGTGTA+TGG	0.547025	7_1:-15869129	Msa1011510:three_prime_UTR
AGTTGTGGAAGTCATGAATT+GGG	0.531926	7_1:-15870450	Msa1011510:exon
ATATTCCTACATAGCGATTA+TGG	0.187438	7_1:+15868842	None:intergenic
ATTTAAATGCCACATATCTC+CGG	0.509605	7_1:-15869214	Msa1011510:exon
ATTTAAATTAGTTGCAGCAG+TGG	0.537538	7_1:-15869138	Msa1011510:three_prime_UTR
CAAAAGTAACATTGTAAAGG+TGG	0.589878	7_1:+15870414	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAATGTTCTAACCTTGA+AGG	-	chr7_1:15869340-15869359	Msa1011510:intron	30.0%
TGTCTTAATAAGTGCATGTT+TGG	+	chr7_1:15869829-15869848	None:intergenic	30.0%
AGAAAATGATACGTTTCTGT+CGG	-	chr7_1:15869917-15869936	Msa1011510:intron	30.0%
GAAACAATTACAAGCATCAA+AGG	-	chr7_1:15870029-15870048	Msa1011510:intron	30.0%
TGAATTGGTATTAACTTAGC+TGG	-	chr7_1:15870180-15870199	Msa1011510:intron	30.0%
AAAACATTATTCCACTCGTT+AGG	+	chr7_1:15870321-15870340	None:intergenic	30.0%
TAATAGCGATTCATATACTC+CGG	-	chr7_1:15870370-15870389	Msa1011510:intron	30.0%
ATATGACATGTCTTTAAGTC+GGG	-	chr7_1:15870454-15870473	Msa1011510:intron	30.0%
AACAATACATTCAAGAGCTT+AGG	-	chr7_1:15870532-15870551	Msa1011510:intron	30.0%
GATCCATAATTTGATTGAAG+CGG	-	chr7_1:15870656-15870675	Msa1011510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	15868778	15873185	15868778	ID=Msa1011510;Name=Msa1011510
chr7_1	mRNA	15868778	15873185	15868778	ID=Msa1011510-mRNA-1;Parent=Msa1011510;Name=Msa1011510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=217\|1\|1\|1\|0\|0\|4\|453\|55
chr7_1	exon	15868778	15869252	15868778	ID=Msa1011510-mRNA-1:exon:4079;Parent=Msa1011510-mRNA-1
chr7_1	exon	15870032	15870092	15870032	ID=Msa1011510-mRNA-1:exon:4078;Parent=Msa1011510-mRNA-1
chr7_1	exon	15870375	15870470	15870375	ID=Msa1011510-mRNA-1:exon:4077;Parent=Msa1011510-mRNA-1
chr7_1	exon	15872980	15873185	15872980	ID=Msa1011510-mRNA-1:exon:4076;Parent=Msa1011510-mRNA-1
chr7_1	five_prime_UTR	15872980	15873185	15872980	ID=Msa1011510-mRNA-1:five_prime_utr;Parent=Msa1011510-mRNA-1
chr7_1	five_prime_UTR	15870460	15870470	15870460	ID=Msa1011510-mRNA-1:five_prime_utr;Parent=Msa1011510-mRNA-1
chr7_1	CDS	15870375	15870459	15870375	ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1	CDS	15870032	15870092	15870032	ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1	CDS	15869231	15869252	15869231	ID=Msa1011510-mRNA-1:cds;Parent=Msa1011510-mRNA-1
chr7_1	three_prime_UTR	15868778	15869230	15868778	ID=Msa1011510-mRNA-1:three_prime_utr;Parent=Msa1011510-mRNA-1

Gene Sequence	>Msa1011510 ATGAATTGGGTTCAGCAAAAGGTCCACCTTTACAATGTTACTTTTGGGCTTTATATGCTGGATTGGTGGGAGCGTTGTTCATTCAATATTTTGGTGATTGTGCTAATGTGTTTTGTAGTGCGGTACATTACCCAATTCTTCAAGAGGTATATATTGTGTATTATTTAA
Protein sequence	>Msa1011510 MNWVQQKVHLYNVTFGLYMLDWWERCSFNILVIVLMCFVVRYITQFFKRYILCII*