AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865570 MtrunA17_Chr5g0448531 98.758 161 2 0 3 163 1 161 6.01e-117 327
Msa0865570 MtrunA17_Chr5g0440601 78.906 128 27 0 36 163 11 138 1.20e-74 219
Msa0865570 MtrunA17_Chr1g0156591 54.286 140 64 0 4 143 2 141 1.88e-52 163
Msa0865570 MtrunA17_Chr7g0263061 43.478 138 78 0 4 141 3 140 7.70e-40 131
Msa0865570 MtrunA17_Chr8g0389621 43.478 138 78 0 4 141 3 140 7.70e-40 131
Msa0865570 MtrunA17_Chr8g0373311 36.810 163 93 2 4 161 2 159 2.74e-31 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865570 AT2G17380.1 91.304 161 14 0 3 163 1 161 1.32e-110 311
Msa0865570 AT4G35410.2 90.625 160 15 0 3 162 1 160 2.98e-108 305
Msa0865570 AT4G35410.1 90.816 98 9 0 3 100 1 98 7.68e-65 194
Msa0865570 AT1G47830.1 52.857 140 66 0 4 143 2 141 2.09e-51 161
Msa0865570 AT2G19790.1 42.754 138 79 0 4 141 3 140 7.47e-39 129
Msa0865570 AT3G50860.1 36.943 157 88 2 4 155 2 152 6.73e-30 107
Msa0865570 AT3G50860.2 37.410 139 82 1 4 137 2 140 9.92e-30 106

Find 43 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATAAAGTTGTTTATAAA+AGG 0.214674 5_4:-66297523 Msa0865570:intron
TTATATGCGTTGCAATTCTA+TGG 0.222882 5_4:-66296311 Msa0865570:three_prime_UTR
GAGATTCTTGATCGGTATTT+TGG 0.252220 5_4:-66297319 Msa0865570:CDS
AATTTCATCAAGTATATAAT+AGG 0.297509 5_4:+66296761 None:intergenic
TCTAATTGCTGGCGAGCTTC+AGG 0.306112 5_4:-66296739 Msa0865570:CDS
CATTGTCTTTCAGGATTCAT+TGG 0.310542 5_4:-66296604 Msa0865570:intron
ATCGCACAAGCTACTAAATA+AGG 0.320939 5_4:-66296540 Msa0865570:exon
CTTCTTTCCTTCTGAGTGTA+AGG 0.334840 5_4:+66297781 None:intergenic
CTTGATGAAATTCTAATTGC+TGG 0.336106 5_4:-66296750 Msa0865570:CDS
GATCTATTTGCTTGAGGATC+AGG 0.339130 5_4:-66296221 Msa0865570:three_prime_UTR
CAATTTGCAGGTCTGTGAAT+TGG 0.375542 5_4:-66297189 Msa0865570:intron
TTGAGCAATGGAGAAATGTT+TGG 0.395006 5_4:-66296438 Msa0865570:three_prime_UTR
CTCTACAAAATTACAGAGCT+TGG 0.403422 5_4:+66297553 None:intergenic
GCTTTGAGATTGAATTTCAT+TGG 0.424235 5_4:-66296177 Msa0865570:three_prime_UTR
GGAAGGTTAGGCTCACAAAA+TGG 0.441892 5_4:-66297810 Msa0865570:CDS
ATATCCGCTGTTGTAATTGT+TGG 0.443732 5_4:-66296465 Msa0865570:three_prime_UTR
TTGCTGTTATATATTTGTAC+TGG 0.444135 5_4:-66296501 Msa0865570:three_prime_UTR
TGATGATGCTGACAACGAAT+TGG 0.451575 5_4:-66297371 Msa0865570:CDS
CAGCGGATATCCTTACTTGA+TGG 0.456039 5_4:+66296478 None:intergenic
CTTGATATTCAACTTCCATA+AGG 0.468058 5_4:-66297165 Msa0865570:intron
GATAATATTACTCAAGGAAC+TGG 0.478446 5_4:+66296560 None:intergenic
TTAGTCGTCAAGGGAAGGTT+AGG 0.481414 5_4:-66297822 Msa0865570:CDS
TTTGTACTGGCCATCAAGTA+AGG 0.483903 5_4:-66296488 Msa0865570:three_prime_UTR
CACTCAGAAGGAAAGAAGTA+AGG 0.487202 5_4:-66297776 Msa0865570:intron
TCTACAAAATTACAGAGCTT+GGG 0.509679 5_4:+66297554 None:intergenic
ATGCGTTGCAATTCTATGGA+TGG 0.526403 5_4:-66296307 Msa0865570:three_prime_UTR
GTGCTTCTCATTAGTCGTCA+AGG 0.528040 5_4:-66297832 Msa0865570:CDS
TATAACAGCAATCGCAACAT+TGG 0.536629 5_4:+66296513 None:intergenic
TGCTCGGTTGATAGCTGCAC+AGG 0.540072 5_4:-66296697 Msa0865570:intron
TGTCTTTCAGGATTCATTGG+TGG 0.541167 5_4:-66296601 Msa0865570:intron
TGCTTCTCATTAGTCGTCAA+GGG 0.558103 5_4:-66297831 Msa0865570:CDS
AATTACAGAGCTTGGGAGCA+CGG 0.567062 5_4:+66297561 None:intergenic
GAATCACTCCACTGAGCTCA+CGG 0.569834 5_4:+66297588 None:intergenic
GGTGTTGATCTATTTGCTTG+AGG 0.579282 5_4:-66296227 Msa0865570:three_prime_UTR
TCTCATTAGTCGTCAAGGGA+AGG 0.585870 5_4:-66297827 Msa0865570:CDS
TTGTGCGATAATATTACTCA+AGG 0.602166 5_4:+66296554 None:intergenic
ATTGGTGGAGACTGCTAAGG+AGG 0.602252 5_4:-66296586 Msa0865570:CDS
GTATTCACCTTACACTCAGA+AGG 0.607833 5_4:-66297788 Msa0865570:CDS
TTCATTGGTGGAGACTGCTA+AGG 0.613718 5_4:-66296589 Msa0865570:CDS
ATTCAACTTAACAATAAACA+TGG 0.633889 5_4:+66296377 None:intergenic
AAGGTAATCCGTGAGCTCAG+TGG 0.653418 5_4:-66297596 Msa0865570:CDS
GCACAAGCTACTAAATAAGG+AGG 0.668635 5_4:-66296537 Msa0865570:exon
AATGCCAACAATTACAACAG+CGG 0.693532 5_4:+66296461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr5_4:66298903-66298922 Msa0865570:intron 0.0%
!!! AAATTGAATGTATTTTTATA+CGG - chr5_4:66297005-66297024 Msa0865570:intron 10.0%
!!! TAAATAAACTTTTGTTGAAA+TGG - chr5_4:66296137-66296156 Msa0865570:three_prime_UTR 15.0%
!! AATGAATATTTATAGAGATA+AGG - chr5_4:66296171-66296190 Msa0865570:three_prime_UTR 15.0%
!! ATGAATATTTATAGAGATAA+GGG - chr5_4:66296172-66296191 Msa0865570:three_prime_UTR 15.0%
!!! GTAAAAAAATTAGTCTTTTT+TGG + chr5_4:66296723-66296742 None:intergenic 15.0%
!! AATAAATCTTAAAAGCTATA+AGG + chr5_4:66296752-66296771 None:intergenic 15.0%
!!! TCTTTAAAAACTTAAATGTA+TGG + chr5_4:66296903-66296922 None:intergenic 15.0%
!! GATATAAAGTTGTTTATAAA+AGG - chr5_4:66297631-66297650 Msa0865570:intron 15.0%
!! ATATTATATCCTTAAGAAAA+GGG + chr5_4:66297900-66297919 None:intergenic 15.0%
!! TATATTATATCCTTAAGAAA+AGG + chr5_4:66297901-66297920 None:intergenic 15.0%
!! TATATCCATAATTCAAAATA+AGG - chr5_4:66298034-66298053 Msa0865570:intron 15.0%
!! GAAATATATTACATTAAACT+TGG + chr5_4:66298208-66298227 None:intergenic 15.0%
!! AATTTCATCAAGTATATAAT+AGG + chr5_4:66298396-66298415 None:intergenic 15.0%
!! TGAATATTTATAGAGATAAG+GGG - chr5_4:66296173-66296192 Msa0865570:three_prime_UTR 20.0%
!! GTATCTCATAAAATATACAT+TGG - chr5_4:66296195-66296214 Msa0865570:three_prime_UTR 20.0%
!!! TATCTCTTTTTTTTTTCTTC+TGG + chr5_4:66296263-66296282 None:intergenic 20.0%
!!! GAACTTTTAAATGAAATGAA+TGG - chr5_4:66297211-66297230 Msa0865570:intron 20.0%
!!! TTTTAAATGAAATGAATGGT+AGG - chr5_4:66297215-66297234 Msa0865570:intron 20.0%
!! ATTATCTGTATGTATTAACA+TGG - chr5_4:66297446-66297465 Msa0865570:intron 20.0%
!! TATTTCCATAATTCAAAACA+AGG - chr5_4:66298222-66298241 Msa0865570:intron 20.0%
!! ATTCAACTTAACAATAAACA+TGG + chr5_4:66298780-66298799 None:intergenic 20.0%
! TCTCATAAAATATACATTGG+AGG - chr5_4:66296198-66296217 Msa0865570:three_prime_UTR 25.0%
! CTCATAAAATATACATTGGA+GGG - chr5_4:66296199-66296218 Msa0865570:three_prime_UTR 25.0%
! TCATAAAATATACATTGGAG+GGG - chr5_4:66296200-66296219 Msa0865570:three_prime_UTR 25.0%
! ATTCCAAGTACAAAAATACA+AGG + chr5_4:66297139-66297158 None:intergenic 25.0%
! TAGAAATCCTAATAACAACT+GGG + chr5_4:66297254-66297273 None:intergenic 25.0%
! TTAGAAATCCTAATAACAAC+TGG + chr5_4:66297255-66297274 None:intergenic 25.0%
! TAATAAAGAGAATAAGCGAT+AGG + chr5_4:66297414-66297433 None:intergenic 25.0%
! ATCGCTTATTCTCTTTATTA+TGG - chr5_4:66297414-66297433 Msa0865570:intron 25.0%
! AGATGTAAATACACATATCA+AGG + chr5_4:66297523-66297542 None:intergenic 25.0%
!!! ATCTCATGTTTTTATTGACA+AGG - chr5_4:66297539-66297558 Msa0865570:CDS 25.0%
!! TGAAATGATTCATCATTTTG+TGG - chr5_4:66297813-66297832 Msa0865570:CDS 25.0%
! GATATATATCGCATTAAACT+TGG + chr5_4:66298020-66298039 None:intergenic 25.0%
! GATTATTAATAGGAGTTACA+GGG + chr5_4:66298071-66298090 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG - chr5_4:66298077-66298096 Msa0865570:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG + chr5_4:66298081-66298100 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG - chr5_4:66298080-66298099 Msa0865570:intron 25.0%
! GATTATTAATAGGAGTTACA+GGG + chr5_4:66298071-66298090 None:intergenic 25.0%
! TCCTATTAATAATCCTTTCA+TGG - chr5_4:66298077-66298096 Msa0865570:intron 25.0%
! ACCATGAAAGGATTATTAAT+AGG + chr5_4:66298081-66298100 None:intergenic 25.0%
! TATTAATAATCCTTTCATGG+TGG - chr5_4:66298080-66298099 Msa0865570:intron 25.0%
! CATGATTAAAAACAAAGAAC+AGG + chr5_4:66298368-66298387 None:intergenic 25.0%
!!! CTGTTCTTTGTTTTTAATCA+TGG - chr5_4:66298366-66298385 Msa0865570:intron 25.0%
!!! TCTTTGTTTTTAATCATGGA+AGG - chr5_4:66298370-66298389 Msa0865570:intron 25.0%
! AAGACAATGTCATACAAATT+TGG + chr5_4:66298539-66298558 None:intergenic 25.0%
!! TTGCTGTTATATATTTGTAC+TGG - chr5_4:66298653-66298672 Msa0865570:intron 25.0%
CATAAAATATACATTGGAGG+GGG - chr5_4:66296201-66296220 Msa0865570:three_prime_UTR 30.0%
GTGTTAAAATGAAAAAGGGA+GGG - chr5_4:66296223-66296242 Msa0865570:three_prime_UTR 30.0%
TTCGCCAAAATCAAAATCAA+TGG - chr5_4:66296444-66296463 Msa0865570:three_prime_UTR 30.0%
!!! CTGACCATTGATTTTGATTT+TGG + chr5_4:66296451-66296470 None:intergenic 30.0%
TAGAAGAAGAAGAAGAAGAA+AGG + chr5_4:66296482-66296501 None:intergenic 30.0%
! GTTTTCGTAATTCGTAAATC+AGG - chr5_4:66296616-66296635 Msa0865570:intron 30.0%
! TAAATCAGGATGGATAGTTT+TGG - chr5_4:66296630-66296649 Msa0865570:intron 30.0%
TTCTATTCAACTAAAACACG+AGG + chr5_4:66296810-66296829 None:intergenic 30.0%
CTGATTCCATAAATGATTCA+TGG - chr5_4:66296869-66296888 Msa0865570:intron 30.0%
!! AAAAGAATGCTGTTTCATCA+TGG + chr5_4:66297072-66297091 None:intergenic 30.0%
! AACAGCATTCTTTTGTGTTT+TGG - chr5_4:66297078-66297097 Msa0865570:intron 30.0%
! ACAGCATTCTTTTGTGTTTT+GGG - chr5_4:66297079-66297098 Msa0865570:intron 30.0%
!! TCACCTTGTATTTTTGTACT+TGG - chr5_4:66297133-66297152 Msa0865570:intron 30.0%
! TGATTGAATTCTGAAAGTCT+AGG - chr5_4:66297189-66297208 Msa0865570:intron 30.0%
CACAAAGTGTATCTACATTT+AGG + chr5_4:66297305-66297324 None:intergenic 30.0%
! TATTAACATGGTGATAGTGA+TGG - chr5_4:66297458-66297477 Msa0865570:intron 30.0%
TCTACAAAATTACAGAGCTT+GGG + chr5_4:66297603-66297622 None:intergenic 30.0%
AGCAGATATTCATTATACCA+TGG + chr5_4:66297729-66297748 None:intergenic 30.0%
! ATTTTGTGGAGATTCTTGAT+CGG - chr5_4:66297827-66297846 Msa0865570:CDS 30.0%
CTTGATATTCAACTTCCATA+AGG - chr5_4:66297989-66298008 Msa0865570:intron 30.0%
TTAAACTTGGACATACCTTA+TGG + chr5_4:66298007-66298026 None:intergenic 30.0%
!!! GTAGGCCTTATTTTGAATTA+TGG + chr5_4:66298042-66298061 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG + chr5_4:66298072-66298091 None:intergenic 30.0%
GAATATAAAGACAGGTGATA+TGG + chr5_4:66298135-66298154 None:intergenic 30.0%
ACTAGACTGAATATAAAGAC+AGG + chr5_4:66298143-66298162 None:intergenic 30.0%
GGATTATTAATAGGAGTTAC+AGG + chr5_4:66298072-66298091 None:intergenic 30.0%
ACTAGACCAATAATAATGAC+AGG + chr5_4:66298331-66298350 None:intergenic 30.0%
CTTGATGAAATTCTAATTGC+TGG - chr5_4:66298404-66298423 Msa0865570:intron 30.0%
! TATCAATGGTCTTTCTCTTT+TGG - chr5_4:66298480-66298499 Msa0865570:intron 30.0%
! ATCAATGGTCTTTCTCTTTT+GGG - chr5_4:66298481-66298500 Msa0865570:intron 30.0%
TTTGTATGACATTGTCTTTC+AGG - chr5_4:66298541-66298560 Msa0865570:intron 30.0%
GATAATATTACTCAAGGAAC+TGG + chr5_4:66298597-66298616 None:intergenic 30.0%
TTGTGCGATAATATTACTCA+AGG + chr5_4:66298603-66298622 None:intergenic 30.0%
TTATATGCGTTGCAATTCTA+TGG - chr5_4:66298843-66298862 Msa0865570:intron 30.0%
!! GCTTTGAGATTGAATTTCAT+TGG - chr5_4:66298977-66298996 Msa0865570:intron 30.0%
!! AGGGGGTGTTAAAATGAAAA+AGG - chr5_4:66296218-66296237 Msa0865570:three_prime_UTR 35.0%
!! GGGGGTGTTAAAATGAAAAA+GGG - chr5_4:66296219-66296238 Msa0865570:three_prime_UTR 35.0%
GGTGTTAAAATGAAAAAGGG+AGG - chr5_4:66296222-66296241 Msa0865570:three_prime_UTR 35.0%
ACAAGAGATGATGAAGATCT+GGG + chr5_4:66296321-66296340 None:intergenic 35.0%
TCGTAATTCGTAAATCAGGA+TGG - chr5_4:66296620-66296639 Msa0865570:intron 35.0%
ATTTATGGAATCAGCAGTGT+TGG + chr5_4:66296863-66296882 None:intergenic 35.0%
TCCATAAATGATTCATGGCT+TGG - chr5_4:66296874-66296893 Msa0865570:intron 35.0%
GTGTATCTACATTTAGGAAG+AGG + chr5_4:66297299-66297318 None:intergenic 35.0%
AGGATGTTTATCATGCAATG+TGG + chr5_4:66297503-66297522 None:intergenic 35.0%
CTCTACAAAATTACAGAGCT+TGG + chr5_4:66297604-66297623 None:intergenic 35.0%
! AGCTCTGTAATTTTGTAGAG+TGG - chr5_4:66297604-66297623 Msa0865570:intron 35.0%
! TGTAATTTTGTAGAGTGGAG+AGG - chr5_4:66297609-66297628 Msa0865570:intron 35.0%
!! CAGCTTTATAGTCTTTTGCA+AGG - chr5_4:66297672-66297691 Msa0865570:intron 35.0%
GCTTGATGTTTAATTGACCA+TGG - chr5_4:66297709-66297728 Msa0865570:intron 35.0%
! GAGATTCTTGATCGGTATTT+TGG - chr5_4:66297835-66297854 Msa0865570:CDS 35.0%
! TTGAAGAGTCCCTTTTCTTA+AGG - chr5_4:66297888-66297907 Msa0865570:intron 35.0%
GTGTCACACTAACTTGATAA+TGG - chr5_4:66297934-66297953 Msa0865570:intron 35.0%
AAACAAAGAACAGGTCAGAA+GGG + chr5_4:66298171-66298190 None:intergenic 35.0%
CATGATCACAAACAAAGAAC+AGG + chr5_4:66298180-66298199 None:intergenic 35.0%
! CTGTTCTTTGTTTGTGATCA+TGG - chr5_4:66298178-66298197 Msa0865570:intron 35.0%
! TCTTTGTTTGTGATCATGGA+AGG - chr5_4:66298182-66298201 Msa0865570:intron 35.0%
!!! GTAGGCCTTGTTTTGAATTA+TGG + chr5_4:66298230-66298249 None:intergenic 35.0%
AATAATAATGACAGGCGATG+TGG + chr5_4:66298323-66298342 None:intergenic 35.0%
ACATCGCCTGTCATTATTAT+TGG - chr5_4:66298322-66298341 Msa0865570:intron 35.0%
CATTGTCTTTCAGGATTCAT+TGG - chr5_4:66298550-66298569 Msa0865570:intron 35.0%
ATCGCACAAGCTACTAAATA+AGG - chr5_4:66298614-66298633 Msa0865570:intron 35.0%
TATAACAGCAATCGCAACAT+TGG + chr5_4:66298644-66298663 None:intergenic 35.0%
ATATCCGCTGTTGTAATTGT+TGG - chr5_4:66298689-66298708 Msa0865570:intron 35.0%
AATGCCAACAATTACAACAG+CGG + chr5_4:66298696-66298715 None:intergenic 35.0%
! ATTGTTGGCATTTTGAGCAA+TGG - chr5_4:66298704-66298723 Msa0865570:intron 35.0%
TTGAGCAATGGAGAAATGTT+TGG - chr5_4:66298716-66298735 Msa0865570:intron 35.0%
GACAAGAGATGATGAAGATC+TGG + chr5_4:66296322-66296341 None:intergenic 40.0%
GAGGAGTGAGTAAAATTGAG+AGG + chr5_4:66296791-66296810 None:intergenic 40.0%
!! ATCAGCAGTGTTGGCTAATT+GGG + chr5_4:66296854-66296873 None:intergenic 40.0%
!! AATCAGCAGTGTTGGCTAAT+TGG + chr5_4:66296855-66296874 None:intergenic 40.0%
GCCAAGCCATGAATCATTTA+TGG + chr5_4:66296878-66296897 None:intergenic 40.0%
! TATACGGTGTCAACTTTGTG+TGG - chr5_4:66297021-66297040 Msa0865570:intron 40.0%
TGCTTCTCATTAGTCGTCAA+GGG - chr5_4:66297323-66297342 Msa0865570:CDS 40.0%
GTATTCACCTTACACTCAGA+AGG - chr5_4:66297366-66297385 Msa0865570:CDS 40.0%
CTTCTTTCCTTCTGAGTGTA+AGG + chr5_4:66297376-66297395 None:intergenic 40.0%
CACTCAGAAGGAAAGAAGTA+AGG - chr5_4:66297378-66297397 Msa0865570:CDS 40.0%
TTGCAAGGCAATCTTCTGTT+TGG - chr5_4:66297687-66297706 Msa0865570:intron 40.0%
! TGATGATGCTGACAACGAAT+TGG - chr5_4:66297783-66297802 Msa0865570:CDS 40.0%
ATGGTCACTTGTCAATTTGC+AGG - chr5_4:66297953-66297972 Msa0865570:intron 40.0%
CAATTTGCAGGTCTGTGAAT+TGG - chr5_4:66297965-66297984 Msa0865570:intron 40.0%
GGAGTTACAGGGAAATAAGT+AGG + chr5_4:66298060-66298079 None:intergenic 40.0%
GGTGATATGGTCAACAATCA+AGG + chr5_4:66298122-66298141 None:intergenic 40.0%
CAAACAAAGAACAGGTCAGA+AGG + chr5_4:66298172-66298191 None:intergenic 40.0%
GGAGTTACAGGGAATTAAGT+AGG + chr5_4:66298248-66298267 None:intergenic 40.0%
TAATTGAGGCTCATTCAGTG+TGG + chr5_4:66298296-66298315 None:intergenic 40.0%
CGAGCAAAAAAACTGTTGCT+CGG - chr5_4:66298441-66298460 Msa0865570:intron 40.0%
TGTCTTTCAGGATTCATTGG+TGG - chr5_4:66298553-66298572 Msa0865570:intron 40.0%
GCACAAGCTACTAAATAAGG+AGG - chr5_4:66298617-66298636 Msa0865570:intron 40.0%
! TTTGTACTGGCCATCAAGTA+AGG - chr5_4:66298666-66298685 Msa0865570:intron 40.0%
ATGCGTTGCAATTCTATGGA+TGG - chr5_4:66298847-66298866 Msa0865570:intron 40.0%
!! GGTGTTGATCTATTTGCTTG+AGG - chr5_4:66298927-66298946 Msa0865570:intron 40.0%
GATCTATTTGCTTGAGGATC+AGG - chr5_4:66298933-66298952 Msa0865570:intron 40.0%
GTTTCTTTCTGGACTCACTG+TGG + chr5_4:66296291-66296310 None:intergenic 45.0%
GAGATGATGAAGATCTGGGT+CGG + chr5_4:66296317-66296336 None:intergenic 45.0%
GTGATGCGATCAAGTCTGTT+TGG - chr5_4:66296652-66296671 Msa0865570:intron 45.0%
CCTAATAACAACTGGGAGAG+AGG + chr5_4:66297247-66297266 None:intergenic 45.0%
! CCTCTCTCCCAGTTGTTATT+AGG - chr5_4:66297244-66297263 Msa0865570:intron 45.0%
GTGCTTCTCATTAGTCGTCA+AGG - chr5_4:66297322-66297341 Msa0865570:CDS 45.0%
TCTCATTAGTCGTCAAGGGA+AGG - chr5_4:66297327-66297346 Msa0865570:CDS 45.0%
TTAGTCGTCAAGGGAAGGTT+AGG - chr5_4:66297332-66297351 Msa0865570:CDS 45.0%
GGAAGGTTAGGCTCACAAAA+TGG - chr5_4:66297344-66297363 Msa0865570:CDS 45.0%
AATTACAGAGCTTGGGAGCA+CGG + chr5_4:66297596-66297615 None:intergenic 45.0%
CAATCAAGGCTCATTCAGTG+TGG + chr5_4:66298108-66298127 None:intergenic 45.0%
GGCGATGTGGTCAATAATTG+AGG + chr5_4:66298310-66298329 None:intergenic 45.0%
GATAGCTGCACAGGTATCAA+TGG - chr5_4:66298466-66298485 Msa0865570:intron 45.0%
TTCATTGGTGGAGACTGCTA+AGG - chr5_4:66298565-66298584 Msa0865570:intron 45.0%
CAGCGGATATCCTTACTTGA+TGG + chr5_4:66298679-66298698 None:intergenic 45.0%
!! TAATAATAATAATAATAATC+AGG + chr5_4:66298902-66298921 None:intergenic 5.0%
TGGGTCGGTCAGTTTCTTTC+TGG + chr5_4:66296302-66296321 None:intergenic 50.0%
AAGGTAATCCGTGAGCTCAG+TGG - chr5_4:66297558-66297577 Msa0865570:CDS 50.0%
GAATCACTCCACTGAGCTCA+CGG + chr5_4:66297569-66297588 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG + chr5_4:66298093-66298112 None:intergenic 50.0%
CAGTGTGGATCCACCATGAA+AGG + chr5_4:66298093-66298112 None:intergenic 50.0%
TCTAATTGCTGGCGAGCTTC+AGG - chr5_4:66298415-66298434 Msa0865570:intron 50.0%
ATTGGTGGAGACTGCTAAGG+AGG - chr5_4:66298568-66298587 Msa0865570:intron 50.0%
!! TGCTCGGTTGATAGCTGCAC+AGG - chr5_4:66298457-66298476 Msa0865570:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 66296111 66299065 66296111 ID=Msa0865570;Name=Msa0865570
chr5_4 mRNA 66296111 66299065 66296111 ID=Msa0865570-mRNA-1;Parent=Msa0865570;Name=Msa0865570-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.83|0.85|0.85|0.83|0.85|7|431|163
chr5_4 exon 66296111 66296613 66296111 ID=Msa0865570-mRNA-1:exon:20998;Parent=Msa0865570-mRNA-1
chr5_4 exon 66296698 66296784 66296698 ID=Msa0865570-mRNA-1:exon:20997;Parent=Msa0865570-mRNA-1
chr5_4 exon 66297166 66297201 66297166 ID=Msa0865570-mRNA-1:exon:20996;Parent=Msa0865570-mRNA-1
chr5_4 exon 66297315 66297423 66297315 ID=Msa0865570-mRNA-1:exon:20995;Parent=Msa0865570-mRNA-1
chr5_4 exon 66297524 66297615 66297524 ID=Msa0865570-mRNA-1:exon:20994;Parent=Msa0865570-mRNA-1
chr5_4 exon 66297777 66297863 66297777 ID=Msa0865570-mRNA-1:exon:20993;Parent=Msa0865570-mRNA-1
chr5_4 exon 66299057 66299065 66299057 ID=Msa0865570-mRNA-1:exon:20992;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66299057 66299065 66299057 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66297777 66297863 66297777 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66297524 66297615 66297524 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66297315 66297423 66297315 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66297166 66297201 66297166 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66296698 66296784 66296698 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 CDS 66296542 66296613 66296542 ID=Msa0865570-mRNA-1:cds;Parent=Msa0865570-mRNA-1
chr5_4 three_prime_UTR 66296111 66296541 66296111 ID=Msa0865570-mRNA-1:three_prime_utr;Parent=Msa0865570-mRNA-1
Gene Sequence

>Msa0865570

ATGAACTTTATACACTTTGTGCTTCTCATTAGTCGTCAAGGGAAGGTTAGGCTCACAAAATGGTATTCACCTTACACTCAGAAGGAAAGAAGTAAGGTAATCCGTGAGCTCAGTGGAGTGATTCTTAGCCGTGCTCCCAAGCTCTGTAATTTTGTAGAGTGGAGAGGATATAAAGTTGTTTATAAAAGATATGCTAGTCTATATTTCTGTATGTGTATTGATGATGCTGACAACGAATTGGAAGTACTTGAAATGATTCATCATTTTGTGGAGATTCTTGATCGGTATTTTGGCAGTGTCTGTGAATTGGACTTGATATTCAACTTCCATAAGGCCTATTATATACTTGATGAAATTCTAATTGCTGGCGAGCTTCAGGAGTCGAGCAAAAAAACTGTTGCTCGGTTGATAGCTGCACAGGATTCATTGGTGGAGACTGCTAAGGAGGAAGCCAGTTCCTTGAGTAATATTATCGCACAAGCTACTAAATAA

Protein sequence

>Msa0865570

MNFIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGYKVVYKRYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATK*